Query 047051
Match_columns 164
No_of_seqs 107 out of 954
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.8E-40 3.9E-45 249.0 19.9 150 1-156 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.3E-35 5E-40 220.3 20.3 146 4-155 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 4.3E-18 9.3E-23 122.7 17.3 138 5-153 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 1.1E-14 2.3E-19 104.9 20.6 107 4-124 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 1.2E-14 2.6E-19 106.2 17.7 137 7-154 2-143 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.6 9.2E-14 2E-18 101.3 16.0 139 6-153 1-140 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 9.2E-13 2E-17 95.1 18.3 112 4-126 2-114 (140)
8 cd08865 SRPBCC_10 Ligand-bindi 99.5 9.1E-13 2E-17 94.6 16.5 136 6-153 1-138 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.5 7.3E-13 1.6E-17 96.5 15.1 134 6-154 1-136 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 5.7E-12 1.2E-16 90.9 16.5 135 5-153 2-136 (138)
11 cd08860 TcmN_ARO-CYC_like N-te 99.5 1.4E-11 3.1E-16 91.7 17.3 138 5-152 2-141 (146)
12 cd07822 SRPBCC_4 Ligand-bindin 99.5 1.8E-11 3.8E-16 88.1 17.2 138 6-152 2-139 (141)
13 cd07812 SRPBCC START/RHO_alpha 99.4 3.8E-11 8.3E-16 84.1 15.9 135 7-151 2-139 (141)
14 cd07814 SRPBCC_CalC_Aha1-like 99.3 6.5E-11 1.4E-15 85.3 14.5 136 6-153 2-137 (139)
15 cd07825 SRPBCC_7 Ligand-bindin 99.3 5.2E-11 1.1E-15 86.9 14.0 140 6-153 2-143 (144)
16 cd07818 SRPBCC_1 Ligand-bindin 99.3 1.3E-10 2.9E-15 85.4 16.1 140 4-153 2-148 (150)
17 cd05018 CoxG Carbon monoxide d 99.3 2E-10 4.3E-15 83.2 16.2 139 5-152 2-142 (144)
18 cd07817 SRPBCC_8 Ligand-bindin 99.3 1.6E-10 3.4E-15 83.4 14.3 107 5-126 1-107 (139)
19 PF03364 Polyketide_cyc: Polyk 99.3 3.6E-10 7.9E-15 81.1 15.6 125 12-149 1-129 (130)
20 cd07824 SRPBCC_6 Ligand-bindin 99.3 1.1E-09 2.4E-14 80.7 16.8 109 6-126 3-113 (146)
21 cd07820 SRPBCC_3 Ligand-bindin 99.2 2.9E-10 6.3E-15 83.0 13.2 109 6-125 1-112 (137)
22 PRK10724 hypothetical protein; 99.2 8.2E-10 1.8E-14 83.4 15.7 133 5-152 16-150 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 99.1 3.4E-09 7.4E-14 78.1 14.7 139 7-153 2-144 (146)
24 COG3427 Carbon monoxide dehydr 99.0 1.6E-08 3.4E-13 75.2 13.3 140 5-155 2-145 (146)
25 cd08898 SRPBCC_CalC_Aha1-like_ 98.8 1.5E-07 3.3E-12 68.3 12.3 139 5-155 2-145 (145)
26 PF06240 COXG: Carbon monoxide 98.8 5.5E-07 1.2E-11 66.3 15.4 136 9-153 2-139 (140)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.7 4.7E-07 1E-11 67.7 13.1 131 3-158 10-140 (157)
28 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 2.5E-06 5.4E-11 62.7 14.7 140 6-155 2-142 (142)
29 COG5637 Predicted integral mem 98.6 3.8E-07 8.2E-12 69.8 8.8 109 4-127 70-179 (217)
30 cd08900 SRPBCC_CalC_Aha1-like_ 98.5 2.3E-05 5E-10 57.4 17.2 137 6-154 2-142 (143)
31 cd08893 SRPBCC_CalC_Aha1-like_ 98.5 3.7E-06 8E-11 60.2 12.7 134 5-154 1-135 (136)
32 cd08895 SRPBCC_CalC_Aha1-like_ 98.5 1.8E-05 4E-10 58.1 16.6 137 5-154 1-145 (146)
33 cd08876 START_1 Uncharacterize 98.5 3.1E-05 6.6E-10 59.5 18.1 145 4-153 41-194 (195)
34 cd08894 SRPBCC_CalC_Aha1-like_ 98.5 7.5E-06 1.6E-10 59.8 13.6 134 6-154 2-138 (139)
35 cd08897 SRPBCC_CalC_Aha1-like_ 98.5 9.5E-06 2.1E-10 58.7 13.5 129 5-154 1-132 (133)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.4 2.2E-05 4.8E-10 57.7 14.5 134 6-155 2-146 (146)
37 COG2867 Oligoketide cyclase/li 98.4 1.3E-05 2.8E-10 59.5 11.6 111 5-126 3-113 (146)
38 COG3832 Uncharacterized conser 98.3 7.9E-05 1.7E-09 55.5 14.8 140 3-154 7-148 (149)
39 cd08891 SRPBCC_CalC Ligand-bin 98.3 7.5E-05 1.6E-09 55.0 14.4 138 6-154 2-148 (149)
40 PF08327 AHSA1: Activator of H 98.3 9.6E-05 2.1E-09 52.0 14.2 122 13-153 1-123 (124)
41 cd08901 SRPBCC_CalC_Aha1-like_ 98.1 0.0001 2.2E-09 53.6 11.2 129 6-156 2-133 (136)
42 cd08892 SRPBCC_Aha1 Putative h 98.1 0.00039 8.3E-09 50.0 14.1 122 6-153 2-124 (126)
43 cd08863 SRPBCC_DUF1857 DUF1857 97.7 0.0047 1E-07 45.9 15.2 121 6-148 2-130 (141)
44 PTZ00220 Activator of HSP-90 A 97.6 0.0017 3.6E-08 47.3 11.6 123 12-153 1-126 (132)
45 cd08873 START_STARD14_15-like 97.5 0.025 5.3E-07 45.5 17.0 148 4-156 77-235 (235)
46 PF08982 DUF1857: Domain of un 97.3 0.034 7.5E-07 41.6 14.9 70 6-85 2-79 (149)
47 cd08874 START_STARD9-like C-te 97.2 0.063 1.4E-06 42.2 16.7 125 5-132 46-183 (205)
48 cd08905 START_STARD1-like Chol 97.2 0.029 6.3E-07 44.0 14.7 146 5-154 50-207 (209)
49 COG4276 Uncharacterized conser 96.9 0.094 2E-06 38.7 14.9 140 4-152 2-145 (153)
50 cd08913 START_STARD14-like Lip 96.8 0.15 3.2E-06 41.1 15.5 145 5-156 82-240 (240)
51 PF10698 DUF2505: Protein of u 96.7 0.09 1.9E-06 39.4 13.0 110 6-125 1-128 (159)
52 cd08877 START_2 Uncharacterize 96.7 0.22 4.7E-06 38.9 15.3 146 3-154 45-213 (215)
53 cd08868 START_STARD1_3_like Ch 96.2 0.41 8.8E-06 37.2 16.0 146 6-155 50-207 (208)
54 cd08870 START_STARD2_7-like Li 96.1 0.47 1E-05 37.0 16.4 145 4-154 50-207 (209)
55 cd08906 START_STARD3-like Chol 95.8 0.69 1.5E-05 36.3 17.0 143 5-154 50-207 (209)
56 cd08914 START_STARD15-like Lip 95.5 1.1 2.3E-05 36.1 15.5 117 4-124 78-205 (236)
57 cd08903 START_STARD5-like Lipi 95.4 0.94 2E-05 35.4 16.1 143 6-154 48-206 (208)
58 cd00177 START Lipid-binding ST 95.4 0.76 1.6E-05 34.2 16.6 144 4-152 39-191 (193)
59 cd08871 START_STARD10-like Lip 95.3 1.1 2.4E-05 35.1 16.8 151 5-160 48-207 (222)
60 smart00234 START in StAR and p 92.4 3.8 8.3E-05 31.2 17.6 147 4-154 45-201 (206)
61 cd08869 START_RhoGAP C-termina 92.0 4.7 0.0001 31.1 14.2 119 5-128 45-171 (197)
62 cd08911 START_STARD7-like Lipi 91.5 5.5 0.00012 31.0 16.9 145 5-154 46-205 (207)
63 cd08910 START_STARD2-like Lipi 88.6 9.9 0.00021 29.6 14.3 141 5-153 50-204 (207)
64 cd08867 START_STARD4_5_6-like 88.3 10 0.00022 29.3 16.9 141 5-153 47-205 (206)
65 cd08872 START_STARD11-like Cer 86.2 16 0.00034 29.2 14.3 141 5-156 53-227 (235)
66 cd08908 START_STARD12-like C-t 78.6 30 0.00065 27.1 12.8 117 4-126 52-176 (204)
67 KOG3177 Oligoketide cyclase/li 72.1 27 0.00058 27.8 7.4 105 10-126 74-182 (227)
68 PF01852 START: START domain; 65.7 55 0.0012 24.6 19.2 149 3-158 45-205 (206)
69 cd08904 START_STARD6-like Lipi 59.0 85 0.0018 24.5 15.4 141 5-153 47-203 (204)
70 PF11485 DUF3211: Protein of u 56.8 15 0.00033 27.0 3.3 39 6-47 3-41 (136)
71 PF11687 DUF3284: Domain of un 41.6 1.2E+02 0.0027 21.3 10.7 99 8-126 3-104 (120)
72 PRK06628 lipid A biosynthesis 39.1 62 0.0013 26.3 4.7 44 117-160 238-281 (290)
73 KOG2936 Uncharacterized conser 35.7 2.1E+02 0.0044 24.0 7.1 99 5-125 174-275 (301)
74 PF11248 DUF3046: Protein of u 31.8 35 0.00076 21.8 1.6 16 13-28 43-58 (63)
75 PRK06553 lipid A biosynthesis 31.4 90 0.002 25.6 4.5 45 117-161 257-301 (308)
76 PRK14681 hypothetical protein; 27.9 2.2E+02 0.0048 21.4 5.7 69 83-158 60-128 (158)
77 PF02021 UPF0102: Uncharacteri 27.9 1.9E+02 0.0042 19.4 6.1 65 85-157 15-79 (93)
78 cd08885 RHO_alpha_C_1 C-termin 26.6 2.7E+02 0.0058 20.6 7.4 44 80-124 81-124 (190)
79 PRK05645 lipid A biosynthesis 26.5 1.5E+02 0.0032 24.1 4.9 41 117-161 238-278 (295)
80 PRK08419 lipid A biosynthesis 26.3 1.6E+02 0.0034 23.9 5.0 23 138-160 259-281 (298)
81 TIGR02208 lipid_A_msbB lipid A 25.7 1.5E+02 0.0034 24.1 4.9 39 118-160 249-287 (305)
82 PF13410 GST_C_2: Glutathione 25.0 1.5E+02 0.0033 17.8 3.8 23 135-157 4-26 (69)
83 TIGR02777 LigD_PE_dom DNA liga 22.8 96 0.0021 23.4 2.8 58 52-126 50-110 (156)
84 TIGR02207 lipid_A_htrB lipid A 22.6 1.7E+02 0.0037 23.8 4.6 40 117-160 245-284 (303)
85 PRK14680 hypothetical protein; 22.2 3E+02 0.0064 20.0 5.3 67 84-158 24-90 (134)
86 PRK14688 hypothetical protein; 22.1 2.8E+02 0.0062 19.7 5.1 66 84-157 24-89 (121)
87 PRK08706 lipid A biosynthesis 22.0 1.9E+02 0.004 23.4 4.7 40 117-160 232-271 (289)
88 PRK08733 lipid A biosynthesis 21.7 2E+02 0.0043 23.5 4.8 40 117-160 248-287 (306)
89 PF10737 GerPC: Spore germinat 21.6 78 0.0017 24.4 2.2 63 83-154 29-93 (176)
90 PF03279 Lip_A_acyltrans: Bact 21.1 2.5E+02 0.0053 22.6 5.3 41 116-160 246-286 (295)
91 cd08902 START_STARD4-like Lipi 20.5 4.3E+02 0.0093 20.8 13.1 139 6-153 49-201 (202)
92 KOG3294 WW domain binding prot 20.4 3.9E+02 0.0085 21.8 6.0 48 96-154 90-137 (261)
93 PRK06860 lipid A biosynthesis 20.0 2.3E+02 0.005 23.2 4.9 40 117-160 251-290 (309)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.8e-40 Score=249.02 Aligned_cols=150 Identities=37% Similarity=0.691 Sum_probs=138.8
Q ss_pred CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcc-cEEEEEeecCCcceeEEEEEEEEeeCC
Q 047051 1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVG-TIKKFNFTEAVKEFRYVKDRVEIMDNE 79 (164)
Q Consensus 1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G-~vR~~~~~~g~~~~~~~kErl~~~D~~ 79 (164)
|++++++.|+++++||+++|+++ ++.++++|+++|++|++++++||||++| |||.|+|.++ ++..++|||++.+|++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~-~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~-~~~~~~Kekve~~D~~ 78 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAF-KSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPG-GPFKYVKEKVEAIDEE 78 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHH-TTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETT-SSEEEEEEEEEEEETT
T ss_pred CCcEEEEEEEEecCCHHHHHHHH-hcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCC-CCcceeEEEEEeecCC
Confidence 99999999999999999999998 5677899999999999999999999887 9999999988 6789999999999999
Q ss_pred CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051 80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN 156 (164)
Q Consensus 80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 156 (164)
+++++|+++||+++ ..+.+|..++++.|.++|+|+++|+++|++.++..++|+.. .+++.+|+|++|+||++|
T Consensus 79 ~~~~~y~viEGd~l-~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~---~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 79 NKTITYTVIEGDVL-GDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKY---LDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TTEEEEEEEEETTG-TTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEecccc-ccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHH---HHHHHHHHHHHHHHHhcC
Confidence 99999999999987 57899999999999999899999999999999888778766 677999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.3e-35 Score=220.29 Aligned_cols=146 Identities=36% Similarity=0.676 Sum_probs=129.9
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccc-cccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMP-KALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV 82 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p-~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~ 82 (164)
++++++++|++|||+||+++ +||.+.+| .|+| +|++|++++|+|++||+|.|+|.+| ++.+.++|||+.+|+++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~-~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~-~~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAF-VLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPG-GKVKYVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHH-hcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCC-CcceEEEEEEEEEcccccE
Confidence 47899999999999999996 89984344 5666 7999999999999999999999988 4667899999999999999
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA 155 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 155 (164)
++|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|+.+ ++.+..+++.++.|++.
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEI---KAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHH---HhHHHHHHHHHHHHHhc
Confidence 99999999986337999999999999988899999999999999988888877 67788888999888865
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.81 E-value=4.3e-18 Score=122.72 Aligned_cols=138 Identities=22% Similarity=0.377 Sum_probs=114.1
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
.++.+++|++|+++||+++ .|+.+ +++|.|. ++++++.++..++|+++.+.+..| ..+++++..+|+.+++++
T Consensus 2 ~i~~~~~i~a~~~~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g----~~~~~~i~~~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALL-SDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG----GTVRERLLALDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHH-hCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC----CEEEEEehhcCccCCEEE
Confidence 4678999999999999997 79997 8999997 778888765446899999988765 368999999999878899
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL 153 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (164)
|++.+++. ++.++.++++|+|.++|+|.++|+..|++.+. .+.+.....+.+.+...++.|++++
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 75 YRIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998743 67889999999999887899999999999865 3344322456777888888888876
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.70 E-value=1.1e-14 Score=104.89 Aligned_cols=107 Identities=23% Similarity=0.397 Sum_probs=88.2
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF 83 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 83 (164)
.+++.++.|++|+++||+++ .|+.+ +++|.|+ +.++++.++ +++|..+.++.... ..+++++..+|++.+.+
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~-~~~~~~~~~~~~g~----~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLL-SDPEN-WPRWWPG-VKSVELLSG-GGPGTERTVRVAGR----GTVREEITEYDPEPRRI 73 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHH-TTTTG-GGGTSTT-EEEEEEEEE-CSTEEEEEEEECSC----SEEEEEEEEEETTTTEE
T ss_pred EEEEEEEEECCCHHHHHHHH-hChhh-hhhhhhc-eEEEEEccc-cccceeEEEEeccc----cceeEEEEEecCCCcEE
Confidence 46888999999999999996 89997 8999996 889998653 34566566665431 36999999999889999
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEE
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYES 124 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~ 124 (164)
.|++. . .++.++.++++|+|.++| |.+.|+.+|++
T Consensus 74 ~~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 99996 2 367899999999999875 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.67 E-value=1.2e-14 Score=106.25 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=96.9
Q ss_pred EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCC---cceeEEEEEEEEeeCCCcEE
Q 047051 7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV---KEFRYVKDRVEIMDNENHVF 83 (164)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~---~~~~~~kErl~~~D~~~~~~ 83 (164)
+.++.|++|+++||+++ .|+++ +|+|+|+ +++++++++.+ .+.........+. .-...+..++...++..+.+
T Consensus 2 ~~~~~i~a~~~~Vw~~l-~D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 77 (144)
T cd08866 2 VARVRVPAPPETVWAVL-TDYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPREL 77 (144)
T ss_pred eEEEEECCCHHHHHHHH-hChhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceE
Confidence 57899999999999996 89997 8999997 88999887643 1211111100000 00023455666667667899
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCC-CceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHHh
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSD-GDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFLL 154 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~d-g~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~ 154 (164)
+|++++|+ +..+.++++++|.++ |+|+++|+.++++... ++....+ ..++.+..++++|.+.+.
T Consensus 78 ~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 78 DFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998774 678999999999988 6899999999999762 2222233 366677788888877653
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.60 E-value=9.2e-14 Score=101.32 Aligned_cols=139 Identities=18% Similarity=0.188 Sum_probs=96.0
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY 85 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 85 (164)
+++++.|++|+++||+++ .|+.+ +|+|+|. .+++.++++++...++.+....+.... .+ +....+|++.+.+.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l-~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLL-ADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVH-TW-TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHH-HhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEE-EE-EEEEEEcCCCCEEEE
Confidence 368899999999999996 89997 9999996 455555543322245555554221222 23 334457887888999
Q ss_pred EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 047051 86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFL 153 (164)
Q Consensus 86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l 153 (164)
..+++.. .+..+.++++|+|.++++|.|+|+.+|++........... +.+.+.+..++++|.+++
T Consensus 75 ~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 75 RQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred EEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence 9987643 5789999999999987789999999999986433222222 234445666777766654
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=9.2e-13 Score=95.13 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=82.0
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV 82 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~ 82 (164)
.+++.++.|++|+++||+++ .|+.+ +|+|+|. +.+++++++ +++.+....+++..+ +-...+.-+++ .++ .+.
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~ 75 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVL-ADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAY-GIKDTYALEYT-WDG-AGS 75 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHH-hChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeee-eEEEEEEEEEE-EcC-CCc
Confidence 47899999999999999996 89997 9999997 889998654 333333344555433 11111222222 233 677
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG 126 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~ 126 (164)
++|+..++. +...+.++++|+|.++ +|.++|+.++++..
T Consensus 76 i~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 76 VSWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred EEEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 999998775 4678899999999987 79999999999865
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=9.1e-13 Score=94.57 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=94.3
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++++.|++|+++||+++ .|+.+ +++|.|+ +.+++.+.+. .++|+...+....+ +..-.++++++.+|+ .+.++
T Consensus 1 ~~~~~~i~ap~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~-g~~~~~~~~v~~~~p-~~~~~ 75 (140)
T cd08865 1 VEESIVIERPVEEVFAYL-ADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFL-GRRIELTYEITEYEP-GRRVV 75 (140)
T ss_pred CceEEEEcCCHHHHHHHH-HCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEec-CceEEEEEEEEEecC-CcEEE
Confidence 367899999999999997 89997 8999997 6778876433 36788888876533 222357899998885 46788
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL 153 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 153 (164)
|...++. + .+..++++.|.++ +|.++|+.+|+...-........+ ..+..+..+++++.+++
T Consensus 76 ~~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 76 FRGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EEecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 9876542 2 4689999999876 699999999997321111111111 23444556666665554
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.53 E-value=7.3e-13 Score=96.54 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=97.5
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY 85 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 85 (164)
++.++.|++|++.||+++ .|+.+ +|+|+|+ +.+++++++++ -+....+...-+ +-...+..++. +++ .+++++
T Consensus 1 ~~~s~~i~ap~~~v~~~i-~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~i~~ 73 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLV-ADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFG-GIRESFTSRVT-LVP-PESIEA 73 (138)
T ss_pred CeEEEEcCCCHHHHHHHH-HHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeec-cccEEEEEEEE-ecC-CCEEEE
Confidence 367899999999999996 89997 9999997 88999988654 234444555422 21234555655 666 667889
Q ss_pred EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHHHHHHh
Q 047051 86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAAERFLL 154 (164)
Q Consensus 86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~ie~~l~ 154 (164)
..++| +++.+.+++++.|.++|+|.++|..+|++.+. -+..+ . .+.+....+++++++.+.
T Consensus 74 ~~~~g-----~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~---l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 74 ELVDG-----PFKHLEGEWRFKPLGENACKVEFDLEFEFKSR---LLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred EecCC-----ChhhceeEEEEEECCCCCEEEEEEEEEEECCH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877 46789999999999988999999999999852 22222 2 245566677777766543
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.48 E-value=5.7e-12 Score=90.86 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=92.1
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++.++.|++|+++||+++ .|+.+ +|+|+|+ +.+++...+..++|+...++...+ ..+..++..+++.+ +++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~----~~~~~~i~~~~p~~-~~~ 73 (138)
T cd08862 2 KFEATIVIDAPPERVWAVL-TDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL----VRSTFTVTELRPGH-SFT 73 (138)
T ss_pred EEEEEEEEcCCHHHHHHHH-Hhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC----CceEEEEEEecCCC-EEE
Confidence 5788999999999999996 89997 8999997 788888654326777666655433 24677888888655 577
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL 153 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (164)
|+... + ...+..++.|++.++++|.+.|+.+|.........+...+.+...+...++.|.+.+
T Consensus 74 ~~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 136 (138)
T cd08862 74 WTGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAA 136 (138)
T ss_pred EEecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 77532 1 235568999999876789999999887542111111111234455556666665543
No 11
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.45 E-value=1.4e-11 Score=91.73 Aligned_cols=138 Identities=11% Similarity=0.114 Sum_probs=90.3
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF 83 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 83 (164)
..+++++|++||+.||+++ .|..+ +|.|+|. +.++++++.++ +.|..-.+....+ +....+.-+.. +|...+++
T Consensus 2 ~~~~si~i~a~~~~v~~lv-aDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~-g~~~~w~s~~~-~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMT-NDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDAN-GTVWSWVSERT-LDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHH-Hhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccC-CEEEEEEEEEE-ecCCCcEE
Confidence 4679999999999999996 89997 9999997 77889887543 4442211222112 22233433323 78888888
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHH
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERF 152 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~ 152 (164)
.++-. .++ |+....++++|+|.++| |.+++..+|+..++......-+ +.....+...++.|.+.
T Consensus 77 ~~~~~-~~~---p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~ 141 (146)
T cd08860 77 RARRV-ETG---PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKK 141 (146)
T ss_pred EEEEe-cCC---CcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHH
Confidence 77411 122 68999999999999764 9999999999886554333223 22333344444444433
No 12
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.45 E-value=1.8e-11 Score=88.07 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=92.1
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY 85 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 85 (164)
++.++.|++|+++||+++ .|+.+ +|+|+|. +..++... .++|+...+.+..+.+....+.+++..+|+. +++.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVL-TDFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHH-hcccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 678999999999999997 79996 8999986 55554321 4567777777653212224578888988875 46889
Q ss_pred EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 047051 86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERF 152 (164)
Q Consensus 86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~ 152 (164)
+...++. ..-....++.|+|.++++|++.|+..|............-..+.+.+..+++.|.++
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 139 (141)
T cd07822 76 RGGLPFP---GLLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKAR 139 (141)
T ss_pred EecCCCC---cEeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHh
Confidence 9866653 233567899999987778999999888654221111110112344455555555544
No 13
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=3.8e-11 Score=84.05 Aligned_cols=135 Identities=19% Similarity=0.301 Sum_probs=95.9
Q ss_pred EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051 7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY 85 (164)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 85 (164)
+.++.|++|+++||+.+ .|+.+ +++|.|+ +.++++.++. ...|....+.+..+ .....+.++..+++ ...++|
T Consensus 2 ~~~~~i~a~~~~v~~~l-~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~-~~~~~~ 75 (141)
T cd07812 2 EASIEIPAPPEAVWDLL-SDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG--RRLTLTSEVTEVDP-PRPGRF 75 (141)
T ss_pred cEEEEeCCCHHHHHHHH-hChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC--ccccceEEEEEecC-CCceEE
Confidence 57889999999999997 79996 8999997 7888876543 35666666665422 22357888887777 567889
Q ss_pred EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC--CChHHHHHHHHHHHHHHHHHHH
Q 047051 86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL--LSEEDVRNIKQGILTMVKAAER 151 (164)
Q Consensus 86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~ie~ 151 (164)
+...++. + ..+..++++.+.++++|.+.|+.++.+..... ..+...+...+.+..+++.++.
T Consensus 76 ~~~~~~~---~-~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 76 RVTGGGG---G-VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred EEecCCC---C-cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 9887664 2 68899999999987589999999999986442 2222112234444555555544
No 14
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.35 E-value=6.5e-11 Score=85.27 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=93.4
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY 85 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 85 (164)
++.++.|++|+++||+++ .|+.+ +|+|.|+ +..++.....| |+.+.+....+ +....+..++..+|+. +.+.|
T Consensus 2 i~~s~~I~a~~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~-g~~~~~~~~i~~~~~~-~~i~~ 74 (139)
T cd07814 2 ITIEREFDAPPELVWRAL-TDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPD-GEEGWVSGEVLEVEPP-RRLVF 74 (139)
T ss_pred eEEEEEecCCHHHHHHHc-CCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCC-CCEEeccEEEEEEcCC-CeEEE
Confidence 678899999999999997 79996 8999985 22333211223 66665544332 2224578889988866 56999
Q ss_pred EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051 86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL 153 (164)
Q Consensus 86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (164)
+...++. .+......+++|.|.+ ++|.++|+.++.+.... .+.....+......++..|.+++
T Consensus 75 ~~~~~~~--~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 75 TWAFSDE--TPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred EecccCC--CCCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 9877643 1345678899999998 47999999999986421 22223345566667777777665
No 15
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.35 E-value=5.2e-11 Score=86.87 Aligned_cols=140 Identities=8% Similarity=0.050 Sum_probs=93.2
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC--CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD--GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF 83 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd--g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 83 (164)
++.++.|++|+++||+++ .|+.+ +|+|.|..... ....++ -++|+...+......++. .+..+++.+++..+ +
T Consensus 2 i~~~~~i~ap~e~Vw~~l-~d~~~-~~~W~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~g~~~-~~~~~v~~~~p~~~-l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVL-ADPRR-HPEIDGSGTVR-EAIDGPRILAVGDVFRMAMRLDGGPY-RITNHVVAFEENRL-I 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHH-hCccc-cceeCCCCccc-cccCCCccCCCCCEEEEEEEcCCCce-EEEEEEEEECCCCE-E
Confidence 678899999999999997 89996 89999852222 222333 267887777765421333 46677887777665 8
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL 153 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 153 (164)
+|+..-.+. +......++++++.++|+|+++++.+|...+....-+.............+..|++++
T Consensus 77 ~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 898531111 2345667899999988889999999988764211111101123556778888888876
No 16
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.34 E-value=1.3e-10 Score=85.38 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=91.2
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCccee--eEEE--ecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCC
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVIS--SIDL--LEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNE 79 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~--s~e~--~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~ 79 (164)
-+++.++.|++|+++||+++ .|+.+ +|+|.|.... .++. .+++.++|+...++...+.+ ....++..+++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i-~D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~v~~~~p- 75 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYV-NDLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG---EGEMEITESVP- 75 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHH-hCccc-CcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc---ceEEEEEecCC-
Confidence 36889999999999999996 89997 9999995321 1221 12334678877776554211 34456676665
Q ss_pred CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCC--ChHHH-HHHHHHHHHHHHHHHHHH
Q 047051 80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLL--SEEDV-RNIKQGILTMVKAAERFL 153 (164)
Q Consensus 80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~k~ie~~l 153 (164)
.+++.|++..++++ + ..+.++++|+|.+ +||.++|+.+|+....... ..... ..+++.+...+.++.+++
T Consensus 76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 76 NERIEYELRFIKPF--E-ATNDVEFTLEPVG-GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred CcEEEEEEEecCCc--c-ccceEEEEEEEcC-CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 55699999765432 1 3778999999995 5799999999997642210 00111 123445555566665554
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.33 E-value=2e-10 Score=83.19 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=86.2
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++.++.+++|+++||+++ .|+.+ +++|+|+ +++++.+++++ ......+.+... +..-..+-++..+|+. +.+.
T Consensus 2 ~~~~~~~i~a~~e~v~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 75 (144)
T cd05018 2 KISGEFRIPAPPEEVWAAL-NDPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPV-KGTFKGKVELSDLDPP-ESYT 75 (144)
T ss_pred eeeeEEEecCCHHHHHHHh-cCHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccE-EEEEEEEEEEEecCCC-cEEE
Confidence 4788999999999999997 89996 8999997 77777654321 111111222111 1011124455544544 5677
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCC-ChHHH-HHHHHHHHHHHHHHHHH
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLL-SEEDV-RNIKQGILTMVKAAERF 152 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~k~ie~~ 152 (164)
++....+. .....+.++++++|. +++|.++|+.+|++.+.... ....+ +...+.+..+++.+.++
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 76 ITGEGKGG--AGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EEEEEcCC--CceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 77654332 135689999999998 66899999999998753211 22222 23444555666665554
No 18
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=1.6e-10 Score=83.39 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=78.5
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++.++.|++|+++||+++ .|+.+ +|+|.|+ +++++++.+. +....+.+..| .. ..+..++...++.. .+.
T Consensus 1 ~v~~~i~I~ap~e~V~~~~-~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g-~~-~~~~~~v~~~~~~~-~i~ 71 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFW-RDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAG-LS-VEWDAEITEQVPNE-RIA 71 (139)
T ss_pred CeeEEEEeCCCHHHHHHHH-hChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCC-Cc-EEEEEEEeccCCCC-EEE
Confidence 3678999999999999997 89997 9999997 7888876441 22222333324 22 35666666555544 588
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG 126 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~ 126 (164)
|....|. + .+.+++.|+|.++++|.++++..|++..
T Consensus 72 ~~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 72 WRSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred EEECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 9875542 3 5679999999887789999999999875
No 19
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.29 E-value=3.6e-10 Score=81.12 Aligned_cols=125 Identities=20% Similarity=0.355 Sum_probs=84.0
Q ss_pred ecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEEecc
Q 047051 12 SPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGG 91 (164)
Q Consensus 12 i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~eg~ 91 (164)
|++|+++||+++ .|+.+ +|+|+|. ++++++++.++. +..-.+....+..+ ..+..++. .+...+ +.+..++|
T Consensus 1 V~ap~~~V~~~i-~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~g- 72 (130)
T PF03364_consen 1 VNAPPEEVWSVI-TDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIK-RSWTSRVT-EDPPER-IRFEQISG- 72 (130)
T ss_dssp ESS-HHHHHHHH-TTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTC-EEEEEEEE-EECTTT-EEEESSET-
T ss_pred CCCCHHHHHHHH-HHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEE-EEEEEEEE-EEEeee-eeeeecCC-
Confidence 689999999996 89997 9999997 889999886543 33334555544233 45677776 344444 77777777
Q ss_pred ccccceeEEEEEEEEeeCCC--CceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHH
Q 047051 92 ILGFKVNSYVADVTFTSSSD--GDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAA 149 (164)
Q Consensus 92 ~~~~~~~~y~~ti~v~~~~d--g~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~i 149 (164)
+++.+.+++++.|.++ |+|.++++.+|+...... .+..+ . ...+....++++|
T Consensus 73 ----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 73 ----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGP-LPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp ----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcH-hHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999985 367777777777754333 34333 2 2344445555554
No 20
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=1.1e-09 Score=80.71 Aligned_cols=109 Identities=18% Similarity=0.338 Sum_probs=76.4
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEec-CC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLE-GD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF 83 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~e-Gd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 83 (164)
++.+..|++|+++||+++ .|+.+ +|+|.|+ +.++++++ +. .++|+.-++......+....+.-++...+ ..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~-tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVL-VDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHH-hChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEE
Confidence 567789999999999996 89996 9999996 88888876 23 36676644443221111123455555544 45568
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG 126 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~ 126 (164)
+|+. +|+. . ...+++|+|.++ ||.++++.+++..+
T Consensus 79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 8875 5542 2 368899999765 69999999999754
No 21
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.25 E-value=2.9e-10 Score=83.01 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=84.8
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-C--CcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-G--GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV 82 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g--~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~ 82 (164)
++.++.|++|+++||+.+ .|+.+ +|+|+|+ +.++++++.+ | .+|+.-.+.+.....+. .++-+++.+++. +.
T Consensus 1 ~~~s~~I~ap~e~V~~~~-~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p~-~~ 75 (137)
T cd07820 1 LERSTVIPAPIEEVFDFH-SRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEPP-RR 75 (137)
T ss_pred CeEEEEcCCCHHHHHHHH-cCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcCC-Ce
Confidence 467899999999999996 89997 9999997 7788887433 2 55788778777552233 467777766654 45
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEc
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESL 125 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~ 125 (164)
+++....| ++.++..+..++|.++ +|.++++++|+..
T Consensus 76 f~~~~~~G-----~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 76 FVDEQVSG-----PFRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEEEeccC-----CchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 88887766 4567888999999876 6999999999984
No 22
>PRK10724 hypothetical protein; Provisional
Probab=99.24 E-value=8.2e-10 Score=83.42 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=93.6
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++.++.+++|++++|+++ .|..+ +|+|+|. .+++++++.++. +.+..++.+-+ +-...+..|.. +++.+ ++.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv-~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~-g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLV-NDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKA-GISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred eEEEEEEecCCHHHHHHHH-HHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeC-CccEEEEEEEE-ecCCC-EEE
Confidence 5778899999999999995 89996 9999997 667788765432 23444444422 22245666666 45544 799
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHHHHH
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAAERF 152 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~ie~~ 152 (164)
+++++| |++.+.+.|+|.|.++++|.|++..+|+... +-.+.+ + -..+.+..|.+++++.
T Consensus 89 ~~~~~G-----pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s---~l~~~~~~~~~~~~~~~mv~AF~~R 150 (158)
T PRK10724 89 MQLVDG-----PFKKLIGGWKFTPLSQEACRIEFHLDFEFTN---KLIELAFGRVFKELASNMVQAFTVR 150 (158)
T ss_pred EEecCC-----ChhhccceEEEEECCCCCEEEEEEEEEEEch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 4789999999999987789999999999775 222222 1 1334445566566553
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.14 E-value=3.4e-09 Score=78.09 Aligned_cols=139 Identities=13% Similarity=0.151 Sum_probs=81.6
Q ss_pred EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEE--EEEEEEeeCCCcEEE
Q 047051 7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYV--KDRVEIMDNENHVFR 84 (164)
Q Consensus 7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~--kErl~~~D~~~~~~~ 84 (164)
+.++.+++|+++||+++ .|+.+ ++.|+|+ +++++.+ |++.. .-.+++.-+..+ ..+ +=++..++...+.++
T Consensus 2 ~~~~~v~a~pe~vw~~l-~D~~~-~~~~~pg-~~~~~~~-~~~~~--~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 2 ENEFTVPAPPDRVWALL-LDIER-VAPCLPG-ASLTEVE-GDDEY--KGTVKVKLGPIS-ASFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CceEEecCCHHHHHHHh-cCHHH-HHhcCCC-ceecccc-CCCeE--EEEEEEEEccEE-EEEEEEEEEEeccCCCcEEE
Confidence 57889999999999997 89996 8999997 7777653 32221 122333322011 112 124555554677787
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHH-HHHHHHHHHHHHHHHHH
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVR-NIKQGILTMVKAAERFL 153 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~k~ie~~l 153 (164)
++.-..+.....--....++++.|. +++|.+.|+.+++..+... +....++ ..++.+..+++.+.+.+
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 7754321110111256778888884 4689999999998776321 1112222 23444555555555543
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.01 E-value=1.6e-08 Score=75.19 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=95.7
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCC--cceeEEEEEEEEeeCCCcE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV--KEFRYVKDRVEIMDNENHV 82 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~--~~~~~~kErl~~~D~~~~~ 82 (164)
.++.+..|++|+++||+.| .|+.. +-..+|+ ++|++. +||. ..-.+.+.-|. +.+ .-+=++..+|+..++
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L-~dpe~-~a~ciPG-~qs~e~-~g~e---~~~~v~l~ig~l~~~~-~g~~~~~~v~~~~~~ 73 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFL-NDPEQ-VAACIPG-VQSVET-NGDE---YTAKVKLKIGPLKGTF-SGRVRFVNVDEPPRS 73 (146)
T ss_pred cccceEEecCCHHHHHHHh-cCHHH-HHhhcCC-cceeee-cCCe---EEEEEEEeecceeEEE-EEEEEEccccCCCcE
Confidence 3678899999999999997 79995 7899998 999987 5662 12222232221 111 234456666788888
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCC-CCChHHHH-HHHHHHHHHHHHHHHHHhh
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS-LLSEEDVR-NIKQGILTMVKAAERFLLA 155 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~k~ie~~l~~ 155 (164)
++.+--+|.. ..+-+..+.+.++|.+++ |++.|.++-+..+.. .+-+..++ .+++....+++.|..+|.+
T Consensus 74 ~~i~g~G~~~--~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 74 ITINGSGGGA--AGFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred EEEEeecccc--cceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777655333 467788999999999886 999999998877522 12223332 3556667777777777643
No 25
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.81 E-value=1.5e-07 Score=68.29 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=82.3
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++.++.|++|+++||+++ .|+.. +++|.|... .....|.+..| .+.+.+. ......-++..+++..+ +.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~-td~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~--~~~~~~~~i~~~~p~~~-l~ 71 (145)
T cd08898 2 RIERTILIDAPRERVWRAL-TDPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGY--EHGVFPVTVVEVDPPRR-FS 71 (145)
T ss_pred eeEEEEEecCCHHHHHHHh-cChhh-hhhcccccC--CCcccCCccee---EEecCCC--CccceEEEEEEeCCCcE-EE
Confidence 5789999999999999997 79995 899988532 11111222222 3334322 11134456666666554 77
Q ss_pred EEEEeccc---c-ccceeEEEEEEEEeeCCCCceeEEEEEE-EEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051 85 YSIVEGGI---L-GFKVNSYVADVTFTSSSDGDCFAKLKIE-YESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA 155 (164)
Q Consensus 85 Y~i~eg~~---~-~~~~~~y~~ti~v~~~~dg~s~v~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 155 (164)
|+...... . .........+++|++.++ +|.++++.. |...++.. .........+....++..|++||.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~~~~~~-~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDALPAER-RAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred EEecCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCCCChHH-HHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 87643320 0 001234568899999864 699999887 43221000 0112233556777888888888753
No 26
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.81 E-value=5.5e-07 Score=66.27 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=79.1
Q ss_pred EEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEE
Q 047051 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIV 88 (164)
Q Consensus 9 e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~ 88 (164)
+.+|++|+++||+.| .|+.+ +-+.+|+ +++.+.+. +.--+.++ +.+.+=.+.+ ..+=++..+|+.++.. .++-
T Consensus 2 s~~v~a~~~~vw~~l-~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~~-v~vG~i~~~~-~g~~~~~~~~~~~~~~-~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFL-SDPEN-LARCIPG-VESIEKVG-DEYKGKVK-VKVGPIKGTF-DGEVRITEIDPPESYT-LEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHH-T-HHH-HHHHSTT-EEEEEEEC-TEEEEEEE-EESCCCEEEE-EEEEEEEEEETTTEEE-EEEE
T ss_pred cEEecCCHHHHHHHh-cCHHH-HHhhCCC-cEEeeecC-cEEEEEEE-EEeccEEEEE-EEEEEEEEcCCCcceE-eeee
Confidence 678999999999997 89996 7899998 88888754 31111111 2221111112 2344566677777653 4443
Q ss_pred eccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHH-HHHHHHHHHHHHHHHHH
Q 047051 89 EGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVR-NIKQGILTMVKAAERFL 153 (164)
Q Consensus 89 eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~k~ie~~l 153 (164)
..+.. .-.+..+.+++...++++|.+.|+++++..+-.. .....++ .+++.+..+++.++..|
T Consensus 75 g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 75 GRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33322 2345566777777666669999999999876211 2222232 24445566666666544
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=4.7e-07 Score=67.75 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=89.1
Q ss_pred cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051 3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV 82 (164)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~ 82 (164)
..++..+..|++|+++||+++ .|+.+ +++|.|.. ..+-.+|....+.+... +. ....-++..+|+.. .
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~-~~-~~~~~~v~e~~p~~-~ 77 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAAL-TDPER-LARWFAPG-------TGDLRVGGRVEFVMDDE-EG-PNATGTILACEPPR-L 77 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHH-cCHHH-HHhhcCCC-------CCCcccCceEEEEecCC-CC-CccceEEEEEcCCc-E
Confidence 356889999999999999997 79995 89999842 12223455555555431 11 24567777777664 5
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ 158 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 158 (164)
+.|+...++ .....++.|++.+ ++|.++.+.++.+.. +......+....++..+.+|+-+.+-
T Consensus 78 l~~~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~~------~~~~~~~~GW~~~L~~Lk~~~e~~~~ 140 (157)
T cd08899 78 LAFTWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDER------FGAGAVGAGWHLCLDVLEAALEGGPP 140 (157)
T ss_pred EEEEecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCch------hhhhhhcccHHHHHHHHHHHHcCCCC
Confidence 788875433 2335678888875 579998888886543 12233466778888999998887663
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.65 E-value=2.5e-06 Score=62.68 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=80.7
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
++.+..+++|+++||+++ .|+.. +.+|++..--.+...+.|-.+|..-.+.+. ++ +....+.=++..+|+..+ +.
T Consensus 2 l~i~r~~~ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~-g~~~~~~g~~~ei~p~~~-l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAH-TDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPD-GEEMGFHGVYHEVTPPER-IV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHh-CCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCC-CCEecceEEEEEEcCCCE-EE
Confidence 566779999999999997 79994 777765421122222334334433344443 22 222223445666776544 55
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA 155 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 155 (164)
|+-.-.+. +-.....++.+.+.+ ++|+++.+..|.... .........+.++...++.+|++||.+
T Consensus 78 ~t~~~~~~---~~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~--~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 78 QTEEFEGL---PDGVALETVTFTELG-GRTRLTATSRYPSKE--ARDGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred EEeEecCC---CCCceEEEEEEEECC-CCEEEEEEEEeCCHH--HHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 55322221 113456788999886 579999886653211 000011123567888999999999863
No 29
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.59 E-value=3.8e-07 Score=69.75 Aligned_cols=109 Identities=14% Similarity=0.221 Sum_probs=86.5
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcE
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHV 82 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~ 82 (164)
..++++++|+.|++.||..+ +|+.+ +|.|+.+ +.|+++.+.+- -+|+.. ++...+ .++-+|+ -|..+..
T Consensus 70 i~v~~~V~I~kPae~vy~~W-~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v-~Wea~it-~d~~~e~ 139 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYW-RDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEV-EWEAEIT-KDIPGER 139 (217)
T ss_pred eEEEEEEEeCChHHHHHHHH-Hhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceE-EEeehhh-ccCCCcE
Confidence 46889999999999999998 89998 9999986 99999976541 345554 342343 5788888 6888999
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCC
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGD 127 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~ 127 (164)
+.|+=++|.- +.| ++.++|.+..+..|.|+.+++|.+-++
T Consensus 140 I~W~Sl~Ga~----v~N-sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 140 IQWESLPGAR----VEN-SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred EeeecCCCCc----CCC-CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 9999888853 233 577999999877889999999998763
No 30
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.54 E-value=2.3e-05 Score=57.36 Aligned_cols=137 Identities=18% Similarity=0.111 Sum_probs=79.4
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcc-eeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQV-ISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHVF 83 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~-v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~~ 83 (164)
+..+..+++|+++||+++ .|.. .+.+|+.+. --.+...+.|-.+|..-.+.+. .+ +......=++..+|+.++ +
T Consensus 2 ~~i~r~~~ap~e~Vw~a~-tdp~-~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~-g~~~~~~g~~~~~~p~~~-l 77 (143)
T cd08900 2 FTLERTYPAPPERVFAAW-SDPA-ARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKG-GPEITVEARYHDIVPDER-I 77 (143)
T ss_pred EEEEEEeCCCHHHHHHHh-cCHH-HHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCC-CCEEeeeEEEEEecCCce-E
Confidence 456678999999999997 7999 478887430 1112222233223333333332 22 222233445666776555 6
Q ss_pred EEEEE--eccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051 84 RYSIV--EGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 84 ~Y~i~--eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (164)
.|+-. .++. +......++.|.+.+ ++|.++.+...-...+. +......+.-..++..|+++|.
T Consensus 78 ~~t~~~~~~~~---~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 78 VYTYTMHIGGT---LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEEeeccCCc---cccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 66642 2221 222345788888886 57999998876433211 1233346677888888888874
No 31
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.54 E-value=3.7e-06 Score=60.20 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=81.7
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++.++.|++|+++||+++ .|+.. ++.|.++.. + +++-.+|..-.+...+. .. ..+.=++..+++ .+.++
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~-td~~~-~~~W~~~~~--~---~~~~~~G~~~~~~~~~~-~~-~~~~~~v~~~~~-~~~l~ 70 (136)
T cd08893 1 KFVYVTYIRATPEKVWQAL-TDPEF-TRQYWGGTT--V---ESDWKVGSAFEYRRGDD-GT-VDVEGEVLESDP-PRRLV 70 (136)
T ss_pred CeEEEEEecCCHHHHHHHH-cCchh-hhheecccc--c---ccCCcCCCeEEEEeCCC-cc-cccceEEEEecC-CCeEE
Confidence 4678999999999999997 89995 899987622 1 23323343323333321 11 124455666664 44477
Q ss_pred EEEEecccc-ccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051 85 YSIVEGGIL-GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 85 Y~i~eg~~~-~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (164)
|+...+... ..+-.....++.+++.++ +|+++.+.+..+.+ ++......+....+++.|+++|-
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 71 HTWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence 776433221 012335677888888765 68777776654322 12234556778888999988874
No 32
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.54 E-value=1.8e-05 Score=58.15 Aligned_cols=137 Identities=13% Similarity=0.069 Sum_probs=79.8
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccC-cceeeEEEecCCCCcccEEEE--EeecC-----CcceeEEEEEEEEe
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALP-QVISSIDLLEGDGGVGTIKKF--NFTEA-----VKEFRYVKDRVEIM 76 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P-~~v~s~e~~eGdg~~G~vR~~--~~~~g-----~~~~~~~kErl~~~ 76 (164)
++..+..|++|+++||+++ .|+.. +.+|.+ .-+ .+...+.+-.+|-.-.+ ++.++ .+......=++..+
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~-td~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAF-LDPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHH-cCHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 3566778999999999997 79995 788765 222 11111222122222222 22220 01112334467777
Q ss_pred eCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051 77 DNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 77 D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (164)
++.++ +.|+..-.+.. .+ .....++.+++.+ ++|.++++...-+.. +......+.-..++..|++||-
T Consensus 78 ~p~~~-i~~~~~~~~~~-~~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~------~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNER-IVYTDVFDDPS-LS-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG------IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCE-EEEEEEecCCC-CC-ceEEEEEEEEecC-CCEEEEEEEeCCCch------hhhhHHHHHHHHHHHHHHHHhc
Confidence 77765 77775322221 12 2446888998886 579999888743221 1122346788889999999875
No 33
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.52 E-value=3.1e-05 Score=59.50 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=89.3
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC--CcceeEEEEEEEEeeCCCc
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA--VKEFRYVKDRVEIMDNENH 81 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g--~~~~~~~kErl~~~D~~~~ 81 (164)
..+..+..+++|++++|+++ .|.+. .|+|.|. +.++++++..+.-..+-.+.+... ..+...+..+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi-~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALL-RDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHH-hhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 56788889999999999996 79995 8999996 888898885432112223333211 1111233322222332233
Q ss_pred EEEEEEEeccc--c-cc---ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051 82 VFRYSIVEGGI--L-GF---KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL 153 (164)
Q Consensus 82 ~~~Y~i~eg~~--~-~~---~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 153 (164)
.+...+...+. . .. ....+.+.+.++|.++++|.+.+...+++.+. ++.-.+. .+.+....+++++++.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333321 1 00 15677888999999988999999999999752 3333233 35556678888877654
No 34
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.50 E-value=7.5e-06 Score=59.75 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=76.6
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccC-cceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALP-QVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHVF 83 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P-~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~~ 83 (164)
+..+..+++|+++||+++ .|+.. +.+|++ ..+.. ...+.|..+|..-.+.+. ++ +..-...=++..+++..+ +
T Consensus 2 l~~~r~i~ap~e~Vw~a~-t~p~~-l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~e~~p~~~-l 76 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAW-TDPEH-LAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPD-GTDYPNRIVFLEIEPPER-I 76 (139)
T ss_pred EEEEEEeCCCHHHHHHHh-CCHHH-HhhccCcCCCcc-eEEEEEecCCCEEEEEEECCC-CCEecceEEEEEEcCCCE-E
Confidence 566789999999999997 79984 777763 32221 111223223333233332 22 211112346677777665 7
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHHh
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~ 154 (164)
.|+...++ + ....++.|+|.+ ++|.++.+..|..... -.... ..+.+....++..|++||.
T Consensus 77 ~~t~~~~~----~--~~~v~~~~~~~~-~gT~ltl~~~~~~~~~---~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 77 VYDHGSGP----P--RFRLTVTFEEQG-GKTRLTWRQVFPTAAE---RCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEEeccCC----C--cEEEEEEEEECC-CCEEEEEEEEcCCHHH---HHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 78764331 1 245788999876 6799998876532110 00011 1245567788888888763
No 35
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.48 E-value=9.5e-06 Score=58.75 Aligned_cols=129 Identities=14% Similarity=0.192 Sum_probs=76.6
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCccee-eEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCCc
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVIS-SIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNENH 81 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~-s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~~ 81 (164)
++..++.+++|+++||+++ .|... +.+|+++.-. .+...+.|-.+|..-.+.+. +| +....+.=++..+++.++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~-td~e~-~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g-~~~~~~~g~~~ei~p~~~ 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAW-TTPEH-ITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDG-SMGFDFEGTYTEVEPHKL 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHh-CCHHH-HhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCC-CcccccceEEEEECCCCE
Confidence 4677889999999999997 79994 8888543100 01111233334444333332 22 111123445555666555
Q ss_pred EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051 82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (164)
+.|+..++ ...++.++|.+ ++|.++.+ +.+.+. +......+.-..++..|++||.
T Consensus 78 -l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~-----~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 78 -IEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENE-----NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred -EEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCC-----CcHHHHHHHHHHHHHHHHHHhh
Confidence 78886321 25789999976 57988875 433221 1123456788889999999884
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.42 E-value=2.2e-05 Score=57.68 Aligned_cols=134 Identities=12% Similarity=0.026 Sum_probs=76.3
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcc---eeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCc
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQV---ISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENH 81 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~---v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~ 81 (164)
+..+..+++|+++||+++ .|+.. +.+|++.. +..++ .|-.+|..-.+.+. ++ +..-...=++..+|+.++
T Consensus 2 l~i~r~i~a~~e~Vw~a~-t~pe~-~~~W~~p~~~~~~~~~---~d~~~GG~~~~~~~~~~-g~~~~~~g~v~~i~p~~~ 75 (146)
T cd08896 2 LVLSRTIDAPRELVWRAW-TEPEL-LKQWFCPKPWTTEVAE---LDLRPGGAFRTVMRGPD-GEEFPNPGCFLEVVPGER 75 (146)
T ss_pred eEEEEEeCCCHHHHHHHc-CCHHH-HhccCCCCCccceEEE---EEeecCcEEEEEEECCC-CCEecceEEEEEEeCCCE
Confidence 456789999999999997 79984 77776421 22222 22222222233332 22 221223456777887765
Q ss_pred EEEEE--EEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-----HHHHHHHHHHHHHHHHHh
Q 047051 82 VFRYS--IVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-----NIKQGILTMVKAAERFLL 154 (164)
Q Consensus 82 ~~~Y~--i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k~ie~~l~ 154 (164)
+.|+ +.++... ..-.....++.|++.+ ++|+++.+..+. .++..+ .+.+....++..|++||.
T Consensus 76 -l~~t~~~~~~~~~-~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~-------~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 76 -LVFTDALTPGWRP-AEKPFMTAIITFEDEG-GGTRYTARARHW-------TEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred -EEEEEeecCCcCC-CCCCcEEEEEEEEecC-CcEEEEEEEEeC-------CHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 6666 3222111 0111146789999875 579998875542 122221 135778889999999875
Q ss_pred h
Q 047051 155 A 155 (164)
Q Consensus 155 ~ 155 (164)
+
T Consensus 146 ~ 146 (146)
T cd08896 146 S 146 (146)
T ss_pred C
Confidence 3
No 37
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.35 E-value=1.3e-05 Score=59.46 Aligned_cols=111 Identities=16% Similarity=0.259 Sum_probs=82.6
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
+++++.-++.+|++++++ |.|... +|+++|. -.+..+.+.++ ...+-.++.+=. +=-++..-|.. +++..+.+.
T Consensus 3 ~~~~s~lv~y~a~~mF~L-V~dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k-~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 3 QIERTALVPYSASQMFDL-VNDVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFK-GIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred eeEeeeeccCCHHHHHHH-HHHHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhh-heeeeeeeeee-ecCchhhhh
Confidence 578889999999999999 589996 9999997 44556667664 234555555422 11134444544 566666777
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG 126 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~ 126 (164)
-++++| |++...++|+++|.++++|.|+..++|+..+
T Consensus 77 ~~l~~G-----PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 77 MKLIDG-----PFKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhcC-----ChhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 777777 6788999999999888899999999999886
No 38
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=7.9e-05 Score=55.49 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=79.4
Q ss_pred cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051 3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV 82 (164)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~ 82 (164)
..+++.+..|++|+++||+++ .|.. ++.+|+.+-=.+.++.-| .+....+...++ +.....-+...+++..|
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~-Tdpe-~l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g--~~~~~~~~~~~v~p~~r- 78 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEAL-TDPE-LLARWFMPGGAEFDARTG---GGERVRFRGPDG--PVHSFEGEYLEVVPPER- 78 (149)
T ss_pred CceEEEEEeecCCHHHHHHHh-cCHH-HHHhhcCCCCCccceecC---CceEEeeecCCC--CeeecceEEEEEcCCcE-
Confidence 457888999999999999997 7999 688887521001111111 122334444433 22345666777777665
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH--HHHHHHHHHHHHHHHHh
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN--IKQGILTMVKAAERFLL 154 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~ie~~l~ 154 (164)
|.|+-.-.+.- .+...-..++++++..+|+ .++..........+..+..+. +.+....++..++++|.
T Consensus 79 Iv~tw~~~~~~-~~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 79 IVFTWDFDEDG-EPFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEeccCCCC-CcccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 56665433321 1334556788888876653 222223322222122222222 26678888888888774
No 39
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.27 E-value=7.5e-05 Score=55.04 Aligned_cols=138 Identities=8% Similarity=-0.026 Sum_probs=76.3
Q ss_pred EEEEEEecCCHHHHHHHHhcCccccccccc-Ccc------eeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeC
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKAL-PQV------ISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDN 78 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~-P~~------v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~ 78 (164)
++.++.|+||+++||+++ .| . +.+|+ |.. ...|++.-..| |..+ +...+| . ....=++..+++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~-t~-~--l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~g--~-~~~~g~v~~v~p 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVF-TE-G--FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGEDG--T-ECEWGTVLAWEP 71 (149)
T ss_pred eEEEEEecCCHHHHHHHH-Hh-c--hhhccCCCcccccCCCccEEEcccCC--cEEE-EecCCC--c-EeceEEEEEEcC
Confidence 678999999999999997 67 3 44554 431 13444411223 3333 222223 2 223446666777
Q ss_pred CCcEEEEEEE-eccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHHHHHHHHHHHHHHHHHHHh
Q 047051 79 ENHVFRYSIV-EGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVRNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 79 ~~~~~~Y~i~-eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (164)
.++ ++|+-. ..+....+-..-..++.|++.++++|+++.+.......... ..........+.-..++.+|+++|-
T Consensus 72 ~~~-l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 72 PSR-LVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred CCE-EEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 665 667643 11111001012368899999874679999888875443110 1111112245566778888888874
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.26 E-value=9.6e-05 Score=52.00 Aligned_cols=122 Identities=14% Similarity=0.207 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEEeccc
Q 047051 13 PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGI 92 (164)
Q Consensus 13 ~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~eg~~ 92 (164)
+||+++||+++ .|... +.+|.+......+. ..| |..+... .+| ..-...=++..+++..+ +.|+.--++.
T Consensus 1 ~ap~e~Vw~a~-t~~~~-~~~W~~~~~~~~~~--~~G--g~~~~~~-~~g--~~~~~~~~v~~~~p~~~-i~~~~~~~~~ 70 (124)
T PF08327_consen 1 DAPPERVWEAL-TDPEG-LAQWFTTSEAEMDF--RPG--GSFRFMD-PDG--GEFGFDGTVLEVEPPER-IVFTWRMPDD 70 (124)
T ss_dssp SSSHHHHHHHH-HSHHH-HHHHSEEEEEEEEC--STT--EEEEEEE-TTS--EEEEEEEEEEEEETTTE-EEEEEEEETS
T ss_pred CcCHHHHHHHH-CCHhH-HhhccCCCcceeee--ecC--CEEEEEe-cCC--CCceeeEEEEEEeCCEE-EEEEEEccCC
Confidence 68999999997 79984 88893221222222 223 4444422 333 22234445787888776 7788543332
Q ss_pred cccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH-HHHHHHHHHHHHHHHH
Q 047051 93 LGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN-IKQGILTMVKAAERFL 153 (164)
Q Consensus 93 ~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 153 (164)
. +-.....++.|++ .+++|.++.+.+-.+ ..+.... ..+....++.+|++||
T Consensus 71 ~--~~~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 71 P--DGPESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S--SCEEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred C--CCCceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2346678899999 566898888883332 2232333 6778888889988887
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.06 E-value=0.0001 Score=53.65 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=77.3
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY 85 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 85 (164)
...++.+++|+++||+++ .|+.. +.+|.+. -.+.++..| |.+ .+.+... ++ .+.=++..+++. +.+.|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~-t~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~-~~--~~~g~~~~~~p~-~~l~~ 69 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAF-VDPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMY-GA--SVPVNVLEIEPN-KRIVI 69 (136)
T ss_pred eeEEEEecCCHHHHHHHh-cCHHH-hcccccc-CCCccccCC----CEE-EEEEEcc-CC--ceEEEEEEEcCC-CEEEE
Confidence 467899999999999997 79985 7776443 223333222 333 4545432 11 123355667655 44778
Q ss_pred EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH---HHHHHHHHHHHHHHHHHHhhC
Q 047051 86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV---RNIKQGILTMVKAAERFLLAN 156 (164)
Q Consensus 86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~ie~~l~~~ 156 (164)
+-..++ + .-..+++|++.++|+|.+..+...-+.. .++.. ..+.+....++..+++||...
T Consensus 70 ~w~~~~----~--~s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 70 EWGDPG----E--PTTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred EecCCC----C--CEEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 764321 1 2347889999875689988886643321 12111 113356678888898888654
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.06 E-value=0.00039 Score=49.99 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY 85 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 85 (164)
++.+..+++|+++||+++ .|... +.+|+.. ..+.+... | |..+ +.+| .+.=++..+++..+ ++|
T Consensus 2 i~~~r~i~ap~e~Vw~A~-T~~e~-l~~W~~~-~~~~d~~~--G--G~~~---~~~g-----~~~g~~~~i~p~~~-l~~ 65 (126)
T cd08892 2 ISLTETFQVPAEELYEAL-TDEER-VQAFTRS-PAKVDAKV--G--GKFS---LFGG-----NITGEFVELVPGKK-IVQ 65 (126)
T ss_pred eEEEEEECCCHHHHHHHH-CCHHH-HHhhcCC-CceecCCC--C--CEEE---EeCC-----ceEEEEEEEcCCCE-EEE
Confidence 567889999999999997 79984 7888753 33443322 2 3333 3334 13335666765544 555
Q ss_pred EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHH-HHHHHHHHH
Q 047051 86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILT-MVKAAERFL 153 (164)
Q Consensus 86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l 153 (164)
+---.+.. .. ..-..++.+++. +++|.++.+....+.. ......+.-.. ++..|.++|
T Consensus 66 ~w~~~~~~-~~-~~s~v~~~l~~~-~~gT~ltl~~~g~~~~-------~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 66 KWRFKSWP-EG-HYSTVTLTFTEK-DDETELKLTQTGVPAG-------EEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEEcCCCC-CC-CcEEEEEEEEEC-CCCEEEEEEEECCCCc-------hHHHHHhhHHHHHHHHHHHHh
Confidence 54322210 11 234578888887 4579888777755432 12223455553 667777765
No 43
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.74 E-value=0.0047 Score=45.85 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=72.0
Q ss_pred EEEEEEecCC-------HHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeC
Q 047051 6 IVGEYKSPIA-------VERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDN 78 (164)
Q Consensus 6 ~~~e~~i~ap-------a~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~ 78 (164)
+++.++||-| .+++|+-|.....+ -..++|+ +.+|++++.++. -..|.++|++. .++|++. +++
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~-----~v~e~vt-~~~ 72 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA-----KIRETVT-LEP 72 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc-----eEEEEEE-ecC
Confidence 4566677654 46999988766665 2346775 899999986642 45699999876 7999998 554
Q ss_pred CCcEEEEEEEe-ccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHH
Q 047051 79 ENHVFRYSIVE-GGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKA 148 (164)
Q Consensus 79 ~~~~~~Y~i~e-g~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 148 (164)
.. ++.|.+-. |+ +.++.++...+| -+-.+..|+.......+++ .++..+...++.+.
T Consensus 73 ~~-~v~f~~~~~g~---------~l~~~iee~~~g--~L~lrf~ye~~~p~~~~~e-~~~~~~~~~~a~~~ 130 (141)
T cd08863 73 PS-RVHFLQADAGG---------TLTNTIEEPEDG--ALYLRFVYETTLPEVAEEE-AKAYQEIVKQAYKE 130 (141)
T ss_pred Cc-EEEEEecCCCC---------eEEEEeccCCCC--cEEEEEEEEecCCCcCchH-HHHHHHHHHHHHHH
Confidence 44 47788765 22 123333322233 3556667776643322232 32334444444443
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.64 E-value=0.0017 Score=47.28 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=66.2
Q ss_pred ecCCHHHHHHHHhcCcccccccc-cCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEEec
Q 047051 12 SPIAVERLWKALICDAHNFMPKA-LPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90 (164)
Q Consensus 12 i~apa~~vW~~~~~d~~~~~p~~-~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~eg 90 (164)
+++|+++||+++ .|+. .+.+| .+. ...++... | |.-+.+ .+ .+.=+...+|+..+ +.|+---.
T Consensus 1 f~ap~e~Vw~A~-Tdp~-~l~~w~~~~-~~~~d~~~--G--G~f~~~---~~-----~~~G~~~ev~pp~r-lv~tw~~~ 64 (132)
T PTZ00220 1 FYVPPEVLYNAF-LDAY-TLTRLSLGS-PAEMDAKV--G--GKFSLF---NG-----SVEGEFTELEKPKK-IVQKWRFR 64 (132)
T ss_pred CCCCHHHHHHHH-cCHH-HHHHHhcCC-CccccCCc--C--CEEEEe---cC-----ceEEEEEEEcCCCE-EEEEEecC
Confidence 579999999997 7998 47777 432 21222211 2 333322 23 12235555666664 44443212
Q ss_pred cccccceeEEEEEEEEeeCCCCceeEEEEEE-EEEcCCCCCChHHHHHHHHHHHH-HHHHHHHHH
Q 047051 91 GILGFKVNSYVADVTFTSSSDGDCFAKLKIE-YESLGDSLLSEEDVRNIKQGILT-MVKAAERFL 153 (164)
Q Consensus 91 ~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l 153 (164)
+.. .... -..++.+++.++|+|.++.+.. +......... .......+.-.. ++..|+++|
T Consensus 65 ~~~-~~~~-s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~-~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 65 DWE-EDVY-SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNG-GCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCC-CCCc-eEEEEEEEeCCCCcEEEEEEEecCccccccCCC-chhhHHHhChHHHHHHHHHHHh
Confidence 111 1111 3588899997667899998888 4332211100 001223556666 588888876
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.47 E-value=0.025 Score=45.48 Aligned_cols=148 Identities=14% Similarity=0.052 Sum_probs=89.9
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec--CCcceeEEEEEEEE--eeC
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE--AVKEFRYVKDRVEI--MDN 78 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~--g~~~~~~~kErl~~--~D~ 78 (164)
..+..+..+++|++++|.++ .|..+ .++|.++ ..++++++.-+ ..+-++ +.++. -..+-..+.-+-.. .++
T Consensus 77 l~fk~e~~vd~s~~~v~dlL-~D~~~-R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLL-SDPFK-RPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred eEEEEEEEecCCHHHHHHHH-hCcch-hhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCC
Confidence 35778889999999999997 79996 8999986 88999887322 223233 33321 11122233322221 222
Q ss_pred CC-cEEEEEEEecc--ccc---cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 047051 79 EN-HVFRYSIVEGG--ILG---FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERF 152 (164)
Q Consensus 79 ~~-~~~~Y~i~eg~--~~~---~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~ 152 (164)
.. .++..+-+.-+ +.. .-...+.+-+.+.|.++++|.+.+....+|.--.=.. ..+.-.-..+...|.+-++|
T Consensus 153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd08873 153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVT-CNLAGLSALYCRTFHCCEQF 231 (235)
T ss_pred CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceee-ecchhhhHHHHHHHHHHHHH
Confidence 22 33333333311 100 1356788999999999889999999998886311111 11222345677888888888
Q ss_pred HhhC
Q 047051 153 LLAN 156 (164)
Q Consensus 153 l~~~ 156 (164)
|..|
T Consensus 232 ~~~~ 235 (235)
T cd08873 232 LVTN 235 (235)
T ss_pred hccC
Confidence 8764
No 46
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=97.28 E-value=0.034 Score=41.61 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=41.7
Q ss_pred EEEEEEecCCHH--------HHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEee
Q 047051 6 IVGEYKSPIAVE--------RLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMD 77 (164)
Q Consensus 6 ~~~e~~i~apa~--------~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D 77 (164)
++++++||-|.+ +||+-|.....+ -..++| .+.+|++++-. +..-.|.++|++ ..++|++. +.
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~-----~~v~E~v~-~~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFGG-----ATVRERVT-LY 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEETT-----EEEEEEEE-EE
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEECC-----cEEEEEEE-Ee
Confidence 567777776655 699988655554 234677 48999998754 336789999933 37999998 55
Q ss_pred CCCcEEEE
Q 047051 78 NENHVFRY 85 (164)
Q Consensus 78 ~~~~~~~Y 85 (164)
+.. ++.|
T Consensus 73 ~~~-~V~f 79 (149)
T PF08982_consen 73 PPE-RVDF 79 (149)
T ss_dssp TTT-EEEE
T ss_pred CCc-EEEE
Confidence 444 4667
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.24 E-value=0.063 Score=42.19 Aligned_cols=125 Identities=11% Similarity=0.059 Sum_probs=76.6
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec--CC-cceeEEEEEEEEeeCCC
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE--AV-KEFRYVKDRVEIMDNEN 80 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~--g~-~~~~~~kErl~~~D~~~ 80 (164)
.+..+..+++|++++|+++ .|..+ .++|.+ .++++++++.-+ ...-++..+-.+ .. .+-..+.-+-...+...
T Consensus 46 ~~~ge~~v~as~~~v~~ll-~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAV-KDPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred eEEEEEEEcCCHHHHHHHH-hCcch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 4567889999999999997 79996 899998 499999987432 222233322111 20 11123333322223333
Q ss_pred cEEEEEEEecccc---c---cceeEEEEEEEEeeC---CCCceeEEEEEEEEEcCCCCCCh
Q 047051 81 HVFRYSIVEGGIL---G---FKVNSYVADVTFTSS---SDGDCFAKLKIEYESLGDSLLSE 132 (164)
Q Consensus 81 ~~~~Y~i~eg~~~---~---~~~~~y~~ti~v~~~---~dg~s~v~w~~~~~~~~~~~~~~ 132 (164)
..+.-+-+.-+.. . .-...+.+-+.++|. ++|.|.+......+|.+++.|..
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~ 183 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ 183 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence 3332332222111 0 134567888999998 77789999999999996565443
No 48
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.22 E-value=0.029 Score=44.00 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=86.7
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec-C--CcceeEEEEEEEEeeCCC
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE-A--VKEFRYVKDRVEIMDNEN 80 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~-g--~~~~~~~kErl~~~D~~~ 80 (164)
.+..+..+++|+++++..+..|..+ .++|.+. +.++++++--+ .--.++.+..+. + +.+-..+.-|....+..+
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 4677889999999999554468885 8999986 77877776422 111123322221 1 112233333333334444
Q ss_pred cEEEEEEEeccccc-----cceeEEEEEEEEeeCCC--CceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHH
Q 047051 81 HVFRYSIVEGGILG-----FKVNSYVADVTFTSSSD--GDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERF 152 (164)
Q Consensus 81 ~~~~Y~i~eg~~~~-----~~~~~y~~ti~v~~~~d--g~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~ 152 (164)
..+.....+-+.+. .-...+.+-+.+.|.++ ++|.+.|.+-.+|++. +|.--+ ..+.+.....++.+.++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CCHHHHHHHhHHhHHHHHHHHHHH
Confidence 33222222222210 12456678888999865 7899999999999974 233223 34566777888888877
Q ss_pred Hh
Q 047051 153 LL 154 (164)
Q Consensus 153 l~ 154 (164)
+.
T Consensus 206 ~~ 207 (209)
T cd08905 206 MA 207 (209)
T ss_pred Hh
Confidence 75
No 49
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.094 Score=38.68 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=86.1
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEee-cCCcceeEEEEEEEE--eeCC
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFT-EAVKEFRYVKDRVEI--MDNE 79 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~-~g~~~~~~~kErl~~--~D~~ 79 (164)
+++.+...|++|.+.||+.. ...++ +..+-|..+ +-.-+|+. +.|+--.+.+. -|.++.-.++-|++. .|+.
T Consensus 2 ~tF~~~~~i~aP~E~VWafh-srpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFH-SRPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhh-cCccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 46778889999999999996 67785 667777543 22223432 33433333222 232333578888887 6665
Q ss_pred CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 047051 80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERF 152 (164)
Q Consensus 80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~ 152 (164)
.+ ++=..+.|+. |.-+..-+-++.+.++ +|++.=++.|+...+....-=..+-..-....||+.-+..
T Consensus 78 ~~-FtDv~i~gPf---p~~~WrHtH~F~~egg-~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~ 145 (153)
T COG4276 78 SR-FTDVCITGPF---PALNWRHTHNFVDEGG-GTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHST 145 (153)
T ss_pred ce-eeeeeecCCc---cceeeEEEeeeecCCC-cEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHH
Confidence 54 5555666664 3336888889988764 7999999999987653322211221233445666654443
No 50
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.81 E-value=0.15 Score=41.12 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=82.9
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeecC---CcceeEEEEEEEEeeCCC
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTEA---VKEFRYVKDRVEIMDNEN 80 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~g---~~~~~~~kErl~~~D~~~ 80 (164)
.+..+..+++|+++++.++ .|..+ .++|.++ +.++++++.-+ .- .+..++.++- ..+-..+.-+-...+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL-~D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLL-SDLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHH-hChhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 4667889999999999997 79996 8999986 88999886422 21 2444443321 111122222211122222
Q ss_pred c---EEEEEEEecccc--c---cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-H-HHHHHHHHHHHHH
Q 047051 81 H---VFRYSIVEGGIL--G---FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-N-IKQGILTMVKAAE 150 (164)
Q Consensus 81 ~---~~~Y~i~eg~~~--~---~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~k~ie 150 (164)
. .+..+.+.-+-. . .-..++.+-+.+.|.+++.|.+.+...-+| | .++.-... . ....+...+.+-.
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G-~LP~~~~N~~~~~~p~~~~~~~~~ 234 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--G-VLPYISTDIAGLSSEFYSTFSACS 234 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--c-cccHHHhhhhhhccchhHHHHHHH
Confidence 2 133333332221 0 125567788999999888999988776665 3 33332121 1 2224556666666
Q ss_pred HHHhhC
Q 047051 151 RFLLAN 156 (164)
Q Consensus 151 ~~l~~~ 156 (164)
+||+++
T Consensus 235 ~~~~~~ 240 (240)
T cd08913 235 QFLLDN 240 (240)
T ss_pred HHhhcC
Confidence 666653
No 51
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.74 E-value=0.09 Score=39.40 Aligned_cols=110 Identities=16% Similarity=0.249 Sum_probs=64.1
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccC---c---ceeeEEEecCCCCcccEEE-EEeec-CC--------cceeEE
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALP---Q---VISSIDLLEGDGGVGTIKK-FNFTE-AV--------KEFRYV 69 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P---~---~v~s~e~~eGdg~~G~vR~-~~~~~-g~--------~~~~~~ 69 (164)
++++.++++|+|+||++| .|.. .+..-+. . -+.+++. +|+| . +++. -.++. .. +..-.+
T Consensus 1 f~~~~~~~~~~~~v~~~~-~d~~-y~~~r~~~~g~~~~~~~~~~~-~~~g-~-~v~~~~~v~~~~lP~~~~k~v~~~l~v 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAF-TDED-YWEARCAALGADNAEVESFEV-DGDG-V-RVTVRQTVPADKLPSAARKFVGGDLRV 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHH-cCHH-HHHHHHHHcCCCCceEEEEEE-cCCe-E-EEEEEEecChhhCCHHHHHhcCCCeEE
Confidence 367889999999999997 6876 3333221 1 2334433 3443 1 1111 11211 11 111112
Q ss_pred --EEEEEEeeCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEc
Q 047051 70 --KDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESL 125 (164)
Q Consensus 70 --kErl~~~D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~ 125 (164)
.|+-...++..++.+|++--.+ .| -+..+++.+.|.+ ++|++.++.+.+..
T Consensus 76 ~~~e~w~~~~~g~~~g~~~~~~~G---~P-~~~~G~~~L~~~~-~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 76 TRTETWTPLDDGRRTGTFTVSIPG---AP-VSISGTMRLRPDG-GGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEEecCCCCeEEEEEEEEecC---ce-EEEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence 2333333778888888864322 24 3789999999954 47999999998875
No 52
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.66 E-value=0.22 Score=38.94 Aligned_cols=146 Identities=11% Similarity=0.038 Sum_probs=84.2
Q ss_pred cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee---cCCcceeEEE--EEEEEee
Q 047051 3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT---EAVKEFRYVK--DRVEIMD 77 (164)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~---~g~~~~~~~k--Erl~~~D 77 (164)
..++..+..+++|++.+..++ .|.+ ..++|.|... +.+.++..+.--.+-.+.+. +-+.. ..+- -.++.++
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl-~d~~-~~~~W~p~~~-~~~~l~~~~~~~~v~y~~~~~PwPv~~R-D~v~~~~~~~~~~ 120 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALL-NEVE-LYKTWVPFCI-RSKKVKQLGRADKVCYLRVDLPWPLSNR-EAVFRGFGVDRLE 120 (215)
T ss_pred EEEEEEEEEecCChhHeEEEE-ehhh-hHhhhcccce-eeEEEeecCCceEEEEEEEeCceEecce-EEEEEEEEEeeec
Confidence 356778889999999999996 7998 6999999754 44444433211122222221 11111 1111 1122232
Q ss_pred CCCcEEEE--EEEecc----------cccc-----ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHH
Q 047051 78 NENHVFRY--SIVEGG----------ILGF-----KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIK 139 (164)
Q Consensus 78 ~~~~~~~Y--~i~eg~----------~~~~-----~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~ 139 (164)
++..+.. +-+..+ .... ....+.+-+.++|.++++|.+++....+|.+.- +|.-.+. .++
T Consensus 121 -~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k 198 (215)
T cd08877 121 -ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVAR 198 (215)
T ss_pred -cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHH
Confidence 3333322 211110 1101 246778889999999999999999998887642 3332232 366
Q ss_pred HHHHHHHHHHHHHHh
Q 047051 140 QGILTMVKAAERFLL 154 (164)
Q Consensus 140 ~~~~~~~k~ie~~l~ 154 (164)
+....++.+|.+.+.
T Consensus 199 ~~~~~~~~~l~k~~~ 213 (215)
T cd08877 199 KFAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHHh
Confidence 677788888877654
No 53
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.22 E-value=0.41 Score=37.20 Aligned_cols=146 Identities=10% Similarity=0.028 Sum_probs=82.2
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeec--C-CcceeEEEEEEEEeeCCCc
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTE--A-VKEFRYVKDRVEIMDNENH 81 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~--g-~~~~~~~kErl~~~D~~~~ 81 (164)
+..+..+++|+++++..+..|.+. .++|.+. +..+++++.- +.---+....... . ..+-..+--|....++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 667889999999999754468885 8999986 6677776542 2111122222111 1 0111223223322334333
Q ss_pred EEEEEEEecccc--c---cceeEEEEEEEEeeCCC--CceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 047051 82 VFRYSIVEGGIL--G---FKVNSYVADVTFTSSSD--GDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFL 153 (164)
Q Consensus 82 ~~~Y~i~eg~~~--~---~~~~~y~~ti~v~~~~d--g~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l 153 (164)
.+...-++-+.. . .-...+.+.+.++|.++ ++|.+.|....+|.+.. |.- -+ ..+......+++.+.+++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~-lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQY-LVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cce-eeehhhHHHHHHHHHHHHHHH
Confidence 333332331111 0 12345567788898864 57999999999998632 121 12 234566677888888776
Q ss_pred hh
Q 047051 154 LA 155 (164)
Q Consensus 154 ~~ 155 (164)
.+
T Consensus 206 ~~ 207 (208)
T cd08868 206 AT 207 (208)
T ss_pred hh
Confidence 53
No 54
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.12 E-value=0.47 Score=36.97 Aligned_cols=145 Identities=15% Similarity=0.078 Sum_probs=84.5
Q ss_pred EEEEEEEEe-cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCC--cccEEE-EEee-cCCcceeEEEEEEEEee-
Q 047051 4 GSIVGEYKS-PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG--VGTIKK-FNFT-EAVKEFRYVKDRVEIMD- 77 (164)
Q Consensus 4 ~~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~--~G~vR~-~~~~-~g~~~~~~~kErl~~~D- 77 (164)
..+..+..+ ++|++.+.+++ .|... .++|.+. +.++++++-++. ...++. +.++ +- .+-..+--|..-.|
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~ 125 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFY-WDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPL-SDREYVIARRLWESD 125 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHH-cChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcC-CCceEEEEEEEEEcC
Confidence 346677788 67999999997 79884 8999986 556677664431 222222 1111 11 11133433433344
Q ss_pred CCCcEEEEEEEecccc----ccceeEEEEEEEEeeC--CCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHH
Q 047051 78 NENHVFRYSIVEGGIL----GFKVNSYVADVTFTSS--SDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAE 150 (164)
Q Consensus 78 ~~~~~~~Y~i~eg~~~----~~~~~~y~~ti~v~~~--~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie 150 (164)
+....+..+-+.-+.. ...+..|.+.+.+.|. ++++|.+.++.--+|.+. +|.--+. .+..+.-++++.|.
T Consensus 126 ~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~ 203 (209)
T cd08870 126 DRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLE 203 (209)
T ss_pred CCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHH
Confidence 3333333322222111 0247789999999998 667888888888877442 4443332 35566677778777
Q ss_pred HHHh
Q 047051 151 RFLL 154 (164)
Q Consensus 151 ~~l~ 154 (164)
+.+.
T Consensus 204 ~a~~ 207 (209)
T cd08870 204 NALR 207 (209)
T ss_pred HHHh
Confidence 7664
No 55
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.80 E-value=0.69 Score=36.27 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=79.7
Q ss_pred EEEEEEEecCCHHHHH-HHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec--C-CcceeEEEEEEEEeeCC
Q 047051 5 SIVGEYKSPIAVERLW-KALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE--A-VKEFRYVKDRVEIMDNE 79 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW-~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~--g-~~~~~~~kErl~~~D~~ 79 (164)
.+..+..+++|++++| .++ .|..+ .++|.+. +.++++++.-+ .---++.++.+. + ..+-..+.-|-..-+.+
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll-~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVI-LQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 4678889999999998 565 79996 8999986 77888876422 101112232221 1 11223333343333333
Q ss_pred Cc-EEEEEEEeccccccceeEE-------EEEEEEee-CCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHH
Q 047051 80 NH-VFRYSIVEGGILGFKVNSY-------VADVTFTS-SSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAA 149 (164)
Q Consensus 80 ~~-~~~Y~i~eg~~~~~~~~~y-------~~ti~v~~-~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~i 149 (164)
.. .+..++. -+.+ .+.++| .+-+...+ .++++|.+.|..-.+|.+. +|.--+ ..+.+.....+..+
T Consensus 127 ~~i~~~~sv~-~~~~-P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~--lP~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 127 RYVSAGISTT-HSHK-PPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR--LPRYLIHQSLAATMFEFASHL 202 (209)
T ss_pred cEEEEEEEEe-cCCC-CCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 32 2222222 2211 122222 23333333 5667899999999999973 233222 33566667777777
Q ss_pred HHHHh
Q 047051 150 ERFLL 154 (164)
Q Consensus 150 e~~l~ 154 (164)
.+++.
T Consensus 203 R~~~~ 207 (209)
T cd08906 203 RQRIR 207 (209)
T ss_pred HHHHh
Confidence 77664
No 56
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.46 E-value=1.1 Score=36.13 Aligned_cols=117 Identities=12% Similarity=-0.010 Sum_probs=68.6
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeec--CCcceeEEEEEEEE-ee-CC
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTE--AVKEFRYVKDRVEI-MD-NE 79 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~--g~~~~~~~kErl~~-~D-~~ 79 (164)
..+..+..+++|+++++.+| .|..+ .++|.++ ..++++++.-+.---+..+.-.+ ...+-..+..+-.. .. +.
T Consensus 78 l~fk~e~~vdvs~~~l~~LL-~D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLL-SDFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHH-hChhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 46788889999999999997 79996 8999986 77888876422101255544322 11111222221111 12 22
Q ss_pred C-cEEEEEEEec-ccc-c---cceeE-EEEEEEEeeCCCCceeEEEEEEEEE
Q 047051 80 N-HVFRYSIVEG-GIL-G---FKVNS-YVADVTFTSSSDGDCFAKLKIEYES 124 (164)
Q Consensus 80 ~-~~~~Y~i~eg-~~~-~---~~~~~-y~~ti~v~~~~dg~s~v~w~~~~~~ 124 (164)
+ ..+.-+-+.. -.+ . ..... ..|- .+.|.++++|.+.+....+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2 3332222222 111 0 12344 4444 78999888999999999998
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.45 E-value=0.94 Score=35.39 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=79.5
Q ss_pred EEEEEEecCCHHHHHHHHhcCccc-ccccccCcceeeEEEecC-CCCcccEEEEEee-c-C--CcceeEEEEEE-EEeeC
Q 047051 6 IVGEYKSPIAVERLWKALICDAHN-FMPKALPQVISSIDLLEG-DGGVGTIKKFNFT-E-A--VKEFRYVKDRV-EIMDN 78 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~-~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~-~-g--~~~~~~~kErl-~~~D~ 78 (164)
+..+..++++++++++.+ .|..+ .-++|.+. +.++++++- |+...-++. ..+ . + ..+-..+.-|. ...++
T Consensus 48 ~k~e~~i~~s~~~~~~~l-~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCL-KPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHH-Hhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 678889999999999997 56543 12799985 778888774 222122222 222 1 0 11212222222 22334
Q ss_pred CCcEEEEEEEecccccccee------E--EEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHH
Q 047051 79 ENHVFRYSIVEGGILGFKVN------S--YVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAA 149 (164)
Q Consensus 79 ~~~~~~Y~i~eg~~~~~~~~------~--y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~i 149 (164)
....+.++.++-+.. .+-. . ..+.++..|.++++|.++|.+..+|++.. |.--+ +.+.+.....++.+
T Consensus 125 ~~i~i~~~sv~h~~~-P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~L 201 (208)
T cd08903 125 GTISSNATNVEHPLC-PPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--PQTVVDSFFPASMAEFYNNL 201 (208)
T ss_pred ceEEEeEEeccCCCC-CCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--CHHHHHHHhhHHHHHHHHHH
Confidence 444444434443221 1111 1 23445555556678999999999998533 33223 33556667777888
Q ss_pred HHHHh
Q 047051 150 ERFLL 154 (164)
Q Consensus 150 e~~l~ 154 (164)
.++|.
T Consensus 202 r~~~~ 206 (208)
T cd08903 202 TKAVK 206 (208)
T ss_pred HHHHh
Confidence 77764
No 58
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.42 E-value=0.76 Score=34.17 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=79.9
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC--CcceeEEEEEEEEeeCCCc
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA--VKEFRYVKDRVEIMDNENH 81 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g--~~~~~~~kErl~~~D~~~~ 81 (164)
..+..+..+++|++++|.++ .|... .++|.|. +.++++++-....-.+....+... ..+-..+--+-...+.++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l-~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELL-MDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eeEEEEEEECCCHHHHHHHH-hCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 45667889999999999997 68874 7899985 778888875332123444444322 1111222222222233222
Q ss_pred -EEEEEEEecccc--c-c--ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHH
Q 047051 82 -VFRYSIVEGGIL--G-F--KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERF 152 (164)
Q Consensus 82 -~~~Y~i~eg~~~--~-~--~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~ 152 (164)
.+...=++.+.. . . ....+.+-+.++|.++++|.+.+....++.+.. ++--+. .+.+....+++.+..+
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i--P~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI--PKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc--cHHHHHhhhhhccHHHHHHHHHh
Confidence 222222222101 0 1 122334567789998889999999999998732 232222 2444555555555443
No 59
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.26 E-value=1.1 Score=35.10 Aligned_cols=151 Identities=12% Similarity=0.032 Sum_probs=84.3
Q ss_pred EEEEEEEe-cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCCc
Q 047051 5 SIVGEYKS-PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNENH 81 (164)
Q Consensus 5 ~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~~ 81 (164)
.+..+..+ ++|++.+++++ .|... .++|.+. +..+++++.-+.--.|....+. -...+-..+--|....++...
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l-~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~ 124 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVL-HDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY 124 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHH-HChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence 35556666 79999999997 79874 7899986 5566666542211123233332 111222333333332233222
Q ss_pred EEEEEEEecccc--cc---ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHHhh
Q 047051 82 VFRYSIVEGGIL--GF---KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFLLA 155 (164)
Q Consensus 82 ~~~Y~i~eg~~~--~~---~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~~ 155 (164)
.+...-+.-+.. .. -...+.+-+.++|.++++|.+.|....++.+. +|.--+. .+......+++.|.+.+..
T Consensus 125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred EEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 221111111111 01 12345677888999888999999999998873 3332222 3445566788888877776
Q ss_pred Cchhh
Q 047051 156 NPQCL 160 (164)
Q Consensus 156 ~~~~~ 160 (164)
-++-.
T Consensus 203 y~~~~ 207 (222)
T cd08871 203 YPEWK 207 (222)
T ss_pred HHHHH
Confidence 66543
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=92.43 E-value=3.8 Score=31.19 Aligned_cols=147 Identities=14% Similarity=0.002 Sum_probs=83.0
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC---CcceeEEEEEEEEe-eCC
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA---VKEFRYVKDRVEIM-DNE 79 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g---~~~~~~~kErl~~~-D~~ 79 (164)
..+..+..++++++++...+..|... .++|.+. +.++++++-...-..+..+....- ..+-..+--|-... ++.
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 35677889999999866543478884 8999986 667777763211124444433211 11112222222222 233
Q ss_pred CcEEEEEEEeccccc-----cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051 80 NHVFRYSIVEGGILG-----FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL 153 (164)
Q Consensus 80 ~~~~~Y~i~eg~~~~-----~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 153 (164)
...+..+-++.+... .-...+.+-+.++|.+++.|.+.|....++.+.. |.- -+. .+......+++.+.++|
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i-P~~-lvn~~~~~~~~~~~~~~~~~~ 200 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL-PHW-LVRSLIKSGLAEFAKTWVATL 200 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc-cce-eehhhhhhhHHHHHHHHHHHH
Confidence 334444323222110 0235677889999998888999999999998742 221 122 24445556666666655
Q ss_pred h
Q 047051 154 L 154 (164)
Q Consensus 154 ~ 154 (164)
.
T Consensus 201 ~ 201 (206)
T smart00234 201 Q 201 (206)
T ss_pred H
Confidence 4
No 61
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=91.95 E-value=4.7 Score=31.13 Aligned_cols=119 Identities=10% Similarity=-0.026 Sum_probs=69.0
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCC--
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNEN-- 80 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~-- 80 (164)
.+..+..+++++++++..+ .|. -++|.+. +.++++++--+.-=.|-...++ ....+-..+.-|....+.++
T Consensus 45 ~~K~~~~v~a~~~~v~~~l-~d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRI-LRE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHH-HHH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 4678899999999999986 453 3789986 6677877642210011112221 11122233444333333333
Q ss_pred cEEEEEEEec--cccc--cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCC
Q 047051 81 HVFRYSIVEG--GILG--FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128 (164)
Q Consensus 81 ~~~~Y~i~eg--~~~~--~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~ 128 (164)
..+..+=++- .... .-...+.+-+.++|.++++|.+.|.+..+|.+..
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 3333332321 1100 0134566888899998889999999999998733
No 62
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=91.50 E-value=5.5 Score=30.99 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=82.0
Q ss_pred EEEEEEEe-cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCccc-EEEEEee-c-CCcceeEEEEEEEEeeCCC
Q 047051 5 SIVGEYKS-PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGT-IKKFNFT-E-AVKEFRYVKDRVEIMDNEN 80 (164)
Q Consensus 5 ~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~-vR~~~~~-~-g~~~~~~~kErl~~~D~~~ 80 (164)
.+..+..+ ++|++.+.+++ .|... .++|.+. +.++++++.+...++ +-.+.+. + -...-..+--|....|.++
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQ-LDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 45565666 99999999997 79984 8999986 667788775322122 1122221 1 0011134555555566665
Q ss_pred cEE--EEEEEec-c-ccc---cceeEEEEEEEEeeCC---CCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHH
Q 047051 81 HVF--RYSIVEG-G-ILG---FKVNSYVADVTFTSSS---DGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAA 149 (164)
Q Consensus 81 ~~~--~Y~i~eg-~-~~~---~~~~~y~~ti~v~~~~---dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~i 149 (164)
..+ ...-++- . +.. .-+..|.+.+.+.|.+ +++|.+.++.--+|. ..+|.--+. .+.....++++.|
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l 200 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERL 200 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHH
Confidence 442 1111221 1 100 2467889999999884 457877765554443 344443332 3455666777777
Q ss_pred HHHHh
Q 047051 150 ERFLL 154 (164)
Q Consensus 150 e~~l~ 154 (164)
....+
T Consensus 201 ~~a~~ 205 (207)
T cd08911 201 RNAAL 205 (207)
T ss_pred HHHHh
Confidence 76654
No 63
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=88.63 E-value=9.9 Score=29.60 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=78.2
Q ss_pred EEEEEEEec-CCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee---cCCcceeEE-EEEEEEeeCC
Q 047051 5 SIVGEYKSP-IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT---EAVKEFRYV-KDRVEIMDNE 79 (164)
Q Consensus 5 ~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~---~g~~~~~~~-kErl~~~D~~ 79 (164)
.+..+..++ ++++.+..++ .|... .++|.+.+.+ +.-.+.++. .+-.+.+. +- .+-..+ .-+....|.+
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~~~~-~~~~~~~~~--~i~y~~~k~PwPv-s~RD~V~~r~~~~~~~~ 123 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVY-MDLEY-RKQWDQYVKE-LYEKECDGE--TVIYWEVKYPFPL-SNRDYVYIRQRRDLDVE 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHHHHHh-heeecCCCC--EEEEEEEEcCCCC-CCceEEEEEEeccccCC
Confidence 466677888 7999999997 79885 7899986443 321122231 12223221 11 111222 1122234544
Q ss_pred CcEEEE---EEEeccccc-----cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHH
Q 047051 80 NHVFRY---SIVEGGILG-----FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAE 150 (164)
Q Consensus 80 ~~~~~Y---~i~eg~~~~-----~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie 150 (164)
+..+.. ..++-+... .-+..|.+.+.++|.++++|.+.+..-.+|.+ .+|.--+. .+......+++.|.
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG--~IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG--MIPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC--cchHHHHHHHHHHhhHHHHHHHH
Confidence 432211 112111110 13678999999999887789988888888765 33332232 34556667777776
Q ss_pred HHH
Q 047051 151 RFL 153 (164)
Q Consensus 151 ~~l 153 (164)
...
T Consensus 202 ka~ 204 (207)
T cd08910 202 KAC 204 (207)
T ss_pred HHH
Confidence 654
No 64
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=88.28 E-value=10 Score=29.26 Aligned_cols=141 Identities=9% Similarity=-0.047 Sum_probs=78.6
Q ss_pred EEEEEEEecCCHHHHHHHHhcC--cccccccccCcceeeEEEecCCCCcccEEEEEee--c---C-CcceeEE-EEEEEE
Q 047051 5 SIVGEYKSPIAVERLWKALICD--AHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--E---A-VKEFRYV-KDRVEI 75 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d--~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~---g-~~~~~~~-kErl~~ 75 (164)
.+..+..++++++++.+.+ .| ... .++|.+. +.++++++.-+. . .....+. . + ..+-..+ .+....
T Consensus 47 ~~k~~~~i~~~~~~v~~~l-~d~~~~~-r~~Wd~~-~~~~~~le~id~-~-~~i~~~~~p~~~~~~vs~RDfV~~~~~~~ 121 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVI-IPPCGGL-RLKWDKS-LKHYEVLEKISE-D-LCVGRTITPSAAMGLISPRDFVDLVYVKR 121 (206)
T ss_pred EEEEEEEEcCCHHHHHHHH-HhcCccc-ccccccc-ccceEEEEEeCC-C-eEEEEEEccccccCccCCcceEEEEEEEE
Confidence 4778889999999999986 57 553 6899976 778888875321 1 2222221 1 1 1111222 121122
Q ss_pred eeCCCcEEEEEEEeccccccce------eEEEEEEEEeeCC--CCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHH
Q 047051 76 MDNENHVFRYSIVEGGILGFKV------NSYVADVTFTSSS--DGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMV 146 (164)
Q Consensus 76 ~D~~~~~~~Y~i~eg~~~~~~~------~~y~~ti~v~~~~--dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 146 (164)
.++....+...-++-+.. .+. ..+.+-+-+.|.. +++|.+.|.+..++.+.. |.--+ ..+.++....+
T Consensus 122 ~~~~~~~i~~~Sv~hp~~-p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~ 198 (206)
T cd08867 122 YEDNQWSSSGKSVDIPER-PPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFY 198 (206)
T ss_pred eCCCeEEEEEEeccCCCC-CCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHH
Confidence 333333333333322211 122 2333445567654 457999999999998633 33222 24566677777
Q ss_pred HHHHHHH
Q 047051 147 KAAERFL 153 (164)
Q Consensus 147 k~ie~~l 153 (164)
+.+.+++
T Consensus 199 ~~lr~~~ 205 (206)
T cd08867 199 TDLVKGV 205 (206)
T ss_pred HHHHHhc
Confidence 8777765
No 65
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=86.18 E-value=16 Score=29.23 Aligned_cols=141 Identities=9% Similarity=0.039 Sum_probs=78.5
Q ss_pred EEEEEEEec-CCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEe--e---cCCcceeEE-EEEEEEee
Q 047051 5 SIVGEYKSP-IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNF--T---EAVKEFRYV-KDRVEIMD 77 (164)
Q Consensus 5 ~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~--~---~g~~~~~~~-kErl~~~D 77 (164)
.+..+..++ ++++.+..+| .|... .++|... +.+.++++-.. .++ +.+.. . +-+.. ..+ .-++...|
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l-~D~~~-r~~Wd~~-~~~~~vie~l~-~~~-~I~Y~~~k~PwPvs~R-D~V~~~~~~~~~ 126 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYF-FDPDV-RMDWETT-LENFHVVETLS-QDT-LIFHQTHKRVWPAAQR-DALFVSHIRKIP 126 (235)
T ss_pred eEEEEEEECCCCHHHHHHHH-hChhh-HHHHHhh-hheeEEEEecC-CCC-EEEEEEccCCCCCCCc-EEEEEEEEEecC
Confidence 467777888 9999999997 79985 7899975 77878776421 111 22222 1 11111 122 22222233
Q ss_pred CCC--------cEEEEEEEeccccccce-eEEEEE-----------------EEEeeCCCCceeEEEEEEEEEcCCCCCC
Q 047051 78 NEN--------HVFRYSIVEGGILGFKV-NSYVAD-----------------VTFTSSSDGDCFAKLKIEYESLGDSLLS 131 (164)
Q Consensus 78 ~~~--------~~~~Y~i~eg~~~~~~~-~~y~~t-----------------i~v~~~~dg~s~v~w~~~~~~~~~~~~~ 131 (164)
+.. -.+..++.-.... +- ...++. +.++| ++++|.+.+....+|.+.. |
T Consensus 127 d~~~~~~~~~~vii~~Sv~h~~~P--~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~i--P 201 (235)
T cd08872 127 ALEEPNAHDTWIVCNFSVDHDSAP--LNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWA--P 201 (235)
T ss_pred ccccccCCCeEEEEEecccCccCC--CCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCc--c
Confidence 321 2233333222111 11 122222 22334 3568999999999888633 2
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHhhC
Q 047051 132 EEDV-RNIKQGILTMVKAAERFLLAN 156 (164)
Q Consensus 132 ~~~~-~~~~~~~~~~~k~ie~~l~~~ 156 (164)
.--+ ..+...+.++++.+..|++.+
T Consensus 202 ~wvvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 202 ASVLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHh
Confidence 3223 346668889999999999865
No 66
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=78.55 E-value=30 Score=27.12 Aligned_cols=117 Identities=13% Similarity=0.033 Sum_probs=66.9
Q ss_pred EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEE-Eee-cCCcceeEEEEEEEEeeCCC
Q 047051 4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKF-NFT-EAVKEFRYVKDRVEIMDNEN 80 (164)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~-~~~-~g~~~~~~~kErl~~~D~~~ 80 (164)
..+..+++++++++++...+. |- .+.|.+. +.+..+++.-+ .---++.. ..+ +. ..-..+.-|.-..|..+
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~-~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPH-PARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCC-CCcEEEEEEEEEEeCCC
Confidence 457889999999999999974 54 3788886 55556665421 10111111 111 22 22233444344333444
Q ss_pred cEEEEEEE--ecccc---ccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051 81 HVFRYSIV--EGGIL---GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG 126 (164)
Q Consensus 81 ~~~~Y~i~--eg~~~---~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~ 126 (164)
..+.-... +-+.. ......+.+.+.++|.++|+|.+...+..+|.+
T Consensus 126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG 176 (204)
T cd08908 126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRG 176 (204)
T ss_pred CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCC
Confidence 33322221 11111 012445677788999998899999999999987
No 67
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=72.05 E-value=27 Score=27.79 Aligned_cols=105 Identities=9% Similarity=0.138 Sum_probs=66.8
Q ss_pred EEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcEEEEEE
Q 047051 10 YKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHVFRYSI 87 (164)
Q Consensus 10 ~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~~~Y~i 87 (164)
..+..+++.+++++ .|... +.++.| .-++..+..-+ ++ +.+-.+..+ .+.. +...-+++ .++..++.+- .
T Consensus 74 rligysp~~my~vV-S~V~~-Y~~FVP-wC~kS~V~~~~P~~-~~kA~LeVGFk~l~--E~y~S~Vt-~~~p~l~kt~-~ 145 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVV-SNVSE-YHEFVP-WCKKSDVTSRRPSG-PLKADLEVGFKPLD--ERYTSNVT-CVKPHLTKTV-C 145 (227)
T ss_pred hhhCCCHHHHHHHH-HhHHH-hhcccc-ceeccceeecCCCC-CceeeEEecCcccc--hhheeeeE-EecccceEEe-e
Confidence 45788999999995 78885 778887 45555665433 21 334444432 1101 23444544 5566655432 3
Q ss_pred EeccccccceeEEEEEEEEeeCC--CCceeEEEEEEEEEcC
Q 047051 88 VEGGILGFKVNSYVADVTFTSSS--DGDCFAKLKIEYESLG 126 (164)
Q Consensus 88 ~eg~~~~~~~~~y~~ti~v~~~~--dg~s~v~w~~~~~~~~ 126 (164)
-+|. -+......|++.|.. .+.|.+...++|+-..
T Consensus 146 ~d~r----LF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 146 ADGR----LFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred cccc----HHHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 3443 356777889999988 5789999999999875
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=65.68 E-value=55 Score=24.58 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=87.9
Q ss_pred cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC----CcceeEEEEEEEEe-e
Q 047051 3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA----VKEFRYVKDRVEIM-D 77 (164)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g----~~~~~~~kErl~~~-D 77 (164)
...+.....++++++++...+. +-.. .|-+. +.++++++--..-..|..+.+... ..+-..+--|.... .
T Consensus 45 ~~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~ 119 (206)
T PF01852_consen 45 IKMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDE 119 (206)
T ss_dssp CEEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECT
T ss_pred ceEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEec
Confidence 3457788899999998888863 4342 78875 668887764111145555554432 11222332232323 4
Q ss_pred CCCcEEEEEEEeccccc------cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH-HHHHHHHHHHHHH
Q 047051 78 NENHVFRYSIVEGGILG------FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN-IKQGILTMVKAAE 150 (164)
Q Consensus 78 ~~~~~~~Y~i~eg~~~~------~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie 150 (164)
+....+..+=++.+... .-...+.+.+.++|.+++.|.+.+...-++.+.. +.--.+. +......+++.+-
T Consensus 120 ~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i--P~~~~n~~~~~~~~~~~~~~~ 197 (206)
T PF01852_consen 120 DGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI--PSWLVNMVVKSQPPNFLKNLR 197 (206)
T ss_dssp TSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC--hHHHHHHHHHHhHHHHHHHHH
Confidence 44445554433333220 1234666888899999888999999999888732 2322233 4455667777777
Q ss_pred HHHhhCch
Q 047051 151 RFLLANPQ 158 (164)
Q Consensus 151 ~~l~~~~~ 158 (164)
++|...+.
T Consensus 198 ~~~~~~~~ 205 (206)
T PF01852_consen 198 KALKKQKK 205 (206)
T ss_dssp HHHHHCCT
T ss_pred HHHHHhcc
Confidence 77776654
No 69
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=58.98 E-value=85 Score=24.51 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=80.5
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CC-CcccEEEEEeec---C-CcceeEEEEEEE-Eee
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DG-GVGTIKKFNFTE---A-VKEFRYVKDRVE-IMD 77 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg-~~G~vR~~~~~~---g-~~~~~~~kErl~-~~D 77 (164)
-+..+..++++++++|+.+ .+... ..+|-+ .+..++++|- |+ . .|-...+.+ + +++-..+-=|-- .++
T Consensus 47 l~k~egvi~~~~e~v~~~l-~~~e~-r~~Wd~-~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~~r~~ 121 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFM-YQPEH-RIKWDK-SLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHIKRYE 121 (204)
T ss_pred EEEEEEEecCCHHHHHHHH-hccch-hhhhcc-cccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEEEEeC
Confidence 3567889999999999997 57664 678998 4778887763 21 1 122211121 1 122222222221 134
Q ss_pred CCCcEEEEEEEeccccccc------eeEEEEEEEEeeCCCC--ceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHH
Q 047051 78 NENHVFRYSIVEGGILGFK------VNSYVADVTFTSSSDG--DCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKA 148 (164)
Q Consensus 78 ~~~~~~~Y~i~eg~~~~~~------~~~y~~ti~v~~~~dg--~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ 148 (164)
+....+.+.-++-+-. .| -.++.+=+-+.|..++ +|.+.|-+..++++. +|.--+ +.+...+..++..
T Consensus 122 ~~~~ii~~~sv~Hp~~-Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~--lP~~vv~~~~~~~~~~f~~~ 198 (204)
T cd08904 122 GNMNIVSSVSVEYPQC-PPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN--LSRSVIEKTMPTNLVNLILD 198 (204)
T ss_pred CCEEEEEEEecccCCC-CCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC--CCHHHHHHHhHHHHHHHHHH
Confidence 5444444444444321 12 2334455667888654 799999999998852 333323 3455666677776
Q ss_pred HHHHH
Q 047051 149 AERFL 153 (164)
Q Consensus 149 ie~~l 153 (164)
+...|
T Consensus 199 ~~~~~ 203 (204)
T cd08904 199 AKDGI 203 (204)
T ss_pred HHHhc
Confidence 66543
No 70
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=56.78 E-value=15 Score=27.04 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=29.9
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG 47 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG 47 (164)
++.++..+-+.+.+-.+| +|+.-++|+++|. ++++.. ++
T Consensus 3 ~~~~i~t~H~~e~v~~IL-SDP~F~lp~l~p~-ik~v~~-~~ 41 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTIL-SDPEFVLPRLFPP-IKSVKV-EE 41 (136)
T ss_dssp EEEEEE-SS-HHHHHHHH-T-HHHHHHHHSTT-EEEEE--ST
T ss_pred EEEEeccCCChHheEEEe-cCCccEecccCCc-eEEEEe-cC
Confidence 567888899999999997 7999899999995 888884 44
No 71
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=41.60 E-value=1.2e+02 Score=21.33 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=57.0
Q ss_pred EEEEecCCHHHHHHHHhcCcccccccccC---cceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051 8 GEYKSPIAVERLWKALICDAHNFMPKALP---QVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR 84 (164)
Q Consensus 8 ~e~~i~apa~~vW~~~~~d~~~~~p~~~P---~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 84 (164)
.+.++++||+.+++.|. +. ++.++-- ..+..-++ + |.--.-.+..+ ...+=+|+.+....+ |.
T Consensus 3 I~~~l~v~a~~ff~~l~-~s--~~~DI~~~tgk~~~~~~L-~-----G~~Y~K~~~~~----~~~~v~It~~~~~~~-Y~ 68 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI-DS--LLYDIKQATGKKLPVKQL-K-----GFSYQKKFKNK----REAKVKITEYEPNKR-YA 68 (120)
T ss_pred EEEEecCCHHHHHHHHH-HH--HHHHHHHHcCCCCChhhc-C-----CcEEEEEcCCC----CEEEEEEEEEcCCCE-EE
Confidence 45689999999999874 32 2233221 00000011 1 22222233333 134444666655443 55
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG 126 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~ 126 (164)
++..- +...+..+.++.|.++|.|.|..+=++++.+
T Consensus 69 ~~~~s------~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 69 ATFSS------SRGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEEe------cCCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 55532 3457888899999999889999988888664
No 72
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=39.12 E-value=62 Score=26.33 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=28.1
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051 117 KLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 117 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
.+++.+.+..+....++..+...+....+.+.+|+.+..+|+-|
T Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 35566655432221222222345677889999999999999986
No 73
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.66 E-value=2.1e+02 Score=24.03 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCC-CcE
Q 047051 5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNE-NHV 82 (164)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~-~~~ 82 (164)
.++.+-+++++++.++++| .|.. ++..|.- |-..++++ | |. +.+-+| .+.-++..+... .-.
T Consensus 174 di~l~~tfn~~~~eLy~~f-ld~~-rv~~wt~----S~a~l~~~~~--g~---f~lf~G-----nVtg~~~~~e~~K~Iv 237 (301)
T KOG2936|consen 174 DISLSATFNCRVDELYEIF-LDPE-RVKAWTR----SPAELEADPG--GK---FSLFDG-----NVTGEFLELEKNKKIV 237 (301)
T ss_pred cceehhhcCCCHHHHHHHH-hcHH-HHHHhcC----ChhhcccCCC--Cc---eEEecc-----cceeeeeeecCCCeEE
Confidence 4566778999999999998 6888 4656653 11222333 3 33 344455 233333334443 345
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCC-CceeEEEEEEEEEc
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSD-GDCFAKLKIEYESL 125 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~d-g~s~v~w~~~~~~~ 125 (164)
+.|++-.=+ +.+-+||+++.... |.|.+.....=-|.
T Consensus 238 ~kWrl~~Wp------~~~~atI~~~f~~~~~~t~l~~~~kgVP~ 275 (301)
T KOG2936|consen 238 MKWRLKSWP------DGHDATITLTFYESQGETKLQVKQKGVPI 275 (301)
T ss_pred EEEecccCC------CCccceEEEEEecCCCceEEEEEecCCCc
Confidence 577773221 35567777765543 45776665554444
No 74
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.76 E-value=35 Score=21.78 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHhcCcc
Q 047051 13 PIAVERLWKALICDAH 28 (164)
Q Consensus 13 ~apa~~vW~~~~~d~~ 28 (164)
-++|..||.+++.+|+
T Consensus 43 G~dpr~VW~AlC~~~d 58 (63)
T PF11248_consen 43 GVDPRDVWRALCDAFD 58 (63)
T ss_pred CCCHHHHHHHHHHHcC
Confidence 4789999999876665
No 75
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.42 E-value=90 Score=25.60 Aligned_cols=45 Identities=7% Similarity=0.156 Sum_probs=28.3
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhhh
Q 047051 117 KLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161 (164)
Q Consensus 117 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~~ 161 (164)
.+.+.+.+.-+....++.-....+....+.+.+|+.+..+|+-|.
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw~ 301 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQWL 301 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhhc
Confidence 366777654322111111112356788899999999999999863
No 76
>PRK14681 hypothetical protein; Provisional
Probab=27.91 E-value=2.2e+02 Score=21.43 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=43.0
Q ss_pred EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ 158 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 158 (164)
-.|+|++-. +..-.+.|.++...+++++|-..+.+-.......+.+.+. ......+.++.+.||..++.
T Consensus 60 ~Gy~IL~rN-----~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 60 HGWTTLSRN-----WHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCCEEEEEE-----EeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 356777654 3344588888887544588777777765443322233231 23456788888999987763
No 77
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=27.89 E-value=1.9e+02 Score=19.41 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=33.4
Q ss_pred EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCc
Q 047051 85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP 157 (164)
Q Consensus 85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 157 (164)
|+|++-+ +..-.+.|.++... +++.+-..+.+-.......+.+.+. ......+.++...||..+|
T Consensus 15 ~~IL~rN-----~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 15 YRILERN-----WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp -EEEEEE-----EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CEEeeee-----ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 6666653 45556888888776 4566655555544332222222231 2345677888899999998
No 78
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=26.59 E-value=2.7e+02 Score=20.58 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=29.0
Q ss_pred CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEE
Q 047051 80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYES 124 (164)
Q Consensus 80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~ 124 (164)
...+.|.+.-+-.+ ....++...+++.|.+.+.|.++|..-+.+
T Consensus 81 ~~~~~~~iFPN~~i-~~~~~~~~~~~~~P~~~~~t~~~~~~~~~~ 124 (190)
T cd08885 81 RRLVLFAIFPTHLL-ALTPDYVWWLSLLPEGAGRVRVRWGVLVAP 124 (190)
T ss_pred cceEEEEECCcEEE-EecCCeEEEEEEEecCCCeEEEEEEEEEcc
Confidence 34455666544333 334466778899999988999988765543
No 79
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.47 E-value=1.5e+02 Score=24.07 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=27.6
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhhh
Q 047051 117 KLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161 (164)
Q Consensus 117 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~~ 161 (164)
.|++.+++...... ++.. .+....+.+.+|+++..+|+-|.
T Consensus 238 ~y~i~~~~~~~~~~-~~~~---~~~t~~~~~~lE~~Ir~~PeQw~ 278 (295)
T PRK05645 238 GYKVILEAAPEDMY-STDV---EVSAAAMSKVVERYVRAYPSQYM 278 (295)
T ss_pred eEEEEEecCCcCCC-CCCH---HHHHHHHHHHHHHHHHcCcHHhh
Confidence 46666665432211 2223 56778889999999999999863
No 80
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=26.26 E-value=1.6e+02 Score=23.94 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhCchhh
Q 047051 138 IKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 138 ~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
..+..+.+.+.+|+++.++|+-|
T Consensus 259 ~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 259 ILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 36778889999999999999986
No 81
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=25.70 E-value=1.5e+02 Score=24.14 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051 118 LKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 118 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
|++.+.+...... +++. .+....+.+.+|+++..+|+-|
T Consensus 249 ~~i~~~~~~~~~~-~~~~---~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 249 FELTVRPAMATEL-SVDP---EQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred EEEEEecCCCCCC-CCCH---HHHHHHHHHHHHHHHHcCchHH
Confidence 6666665432222 2223 5667888899999999999986
No 82
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=25.02 E-value=1.5e+02 Score=17.77 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCc
Q 047051 135 VRNIKQGILTMVKAAERFLLANP 157 (164)
Q Consensus 135 ~~~~~~~~~~~~k~ie~~l~~~~ 157 (164)
.+..++.+...++.+|.+|..++
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 45567888999999999999887
No 83
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=22.78 E-value=96 Score=23.41 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=34.1
Q ss_pred ccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEEeccccccceeEEEEEEEEeeCC--CCceeEEEE-EEEEEcC
Q 047051 52 GTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSS--DGDCFAKLK-IEYESLG 126 (164)
Q Consensus 52 G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~--dg~s~v~w~-~~~~~~~ 126 (164)
|..+.|.++-| ++. .-.++..++--+.|-+.|.-.||.+ |.+ .+|+++.|- .+|++.+
T Consensus 50 GVL~SWAvPkG-Ps~-dp~~kRLAv~~EDHpl~Y~~FEG~I---------------P~g~YGaG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 50 GVLKSWAVPKG-PSL-DPADKRLAVHVEDHPLDYADFEGTI---------------PKGEYGAGTVIVWDRGTWEPEG 110 (156)
T ss_pred CeEEEeEcCcC-CCC-CcccceeeeEccCccchhccccccc---------------cCCccCCccEEEEeCceEEeCC
Confidence 56788888766 322 1233334455666666666555554 333 247888885 5677764
No 84
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=22.61 E-value=1.7e+02 Score=23.82 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=26.9
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051 117 KLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 117 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
.+++.+++.....+ .++. .+....+.+.+|+++..+|+.|
T Consensus 245 ~~~i~~~~~~~~~~-~~~~---~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDFP-GDDE---IAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCCC-CCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 36666665432212 2223 5667888999999999999986
No 85
>PRK14680 hypothetical protein; Provisional
Probab=22.16 E-value=3e+02 Score=20.04 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=41.6
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ 158 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 158 (164)
.|+|++-+ +..-.+.|.++... ++++|=..+.+-.......+.+.+. ......+.++.+.||..++.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lVFVEVKtR~~~~~g~p~eaV~--~~K~~ri~raA~~yL~~~~~ 90 (134)
T PRK14680 24 GHRILARN-----WRHGGLELDIVCED-GDTIVFVEVKTRAAHGLTSPTDALT--HSKRHRLIRAARAWLAAHDA 90 (134)
T ss_pred CCEEEEee-----cCCCCCeEEEEEEe-CCEEEEEEEEecCCCCCCChHHhCC--HHHHHHHHHHHHHHHHhCCC
Confidence 46777654 33445788888774 4687777777755433222233231 33456788888999987763
No 86
>PRK14688 hypothetical protein; Provisional
Probab=22.15 E-value=2.8e+02 Score=19.74 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=40.2
Q ss_pred EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCc
Q 047051 84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP 157 (164)
Q Consensus 84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 157 (164)
.|+|++-. +..-.+.|.++... ++++|=..+.+-.......+.+.+. ......+.++.+.||..++
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lVFVEVK~R~~~~~g~~~eaV~--~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 24 GYSIIQTN-----CRLPEGEIDIVGQD-GEYLVFIEVRTKRRLGYGLPAESVT--PRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCEEEEEE-----eeCCCCcEeEEEee-CCEEEEEEEEecCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 46676654 34446888888775 4577777777644332222222221 3345677888899998876
No 87
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.97 E-value=1.9e+02 Score=23.39 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=27.2
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051 117 KLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 117 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
.|++.+.+.....+ ++.+ .+..+.+.+.+|+++..+|+-|
T Consensus 232 ~~~i~i~~~~~~~~-~~~~---~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSFP-SEDA---QADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCCC-CCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 35666655432222 2223 5678899999999999999986
No 88
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.70 E-value=2e+02 Score=23.55 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=27.8
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051 117 KLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 117 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
.|.+.+++.....+ ++++ .+....+.+.+|+++..+|+-|
T Consensus 248 ~y~i~i~~~~~~~~-~~~i---~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADFP-SDDV---IADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCCC-CCCH---HHHHHHHHHHHHHHHHcCcHhh
Confidence 46677765432222 2234 5678889999999999999986
No 89
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=21.56 E-value=78 Score=24.37 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=37.1
Q ss_pred EEEEEEeccccccceeEEEEEEEE--eeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051 83 FRYSIVEGGILGFKVNSYVADVTF--TSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 83 ~~Y~i~eg~~~~~~~~~y~~ti~v--~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (164)
+.|+. |.| +++...||+-+ .| ++++++=.|.+.-++.. ..+++ .....+.+..+...+..||-
T Consensus 29 iEYkF---dqL--KVe~LeGTLNIGl~p-~~~~~i~d~~v~~~~~~-~~~~~--~~~~~~~~~~i~~~v~~yL~ 93 (176)
T PF10737_consen 29 IEYKF---DQL--KVETLEGTLNIGLNP-SDGQSIEDFAVNQESPS-IPPPE--QEQSPQLYQNIQQEVHQYLE 93 (176)
T ss_pred eeeeh---hhh--eeecccceeeeccCC-CCcchHhHhhcCCcCCC-CCCcc--cccchHHHHHHHHHHHHHHH
Confidence 45665 544 78888888887 56 56677777777554442 11111 11124456666677777764
No 90
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=21.11 E-value=2.5e+02 Score=22.56 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=29.3
Q ss_pred EEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051 116 AKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 116 v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
..|.+.+++.-.....+ ...+....+.+.+|+.+.++|+-|
T Consensus 246 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE----DIEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc----hHHHHHHHHHHHHHHHHHcChHhh
Confidence 56777777654333222 225678899999999999999985
No 91
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=20.55 E-value=4.3e+02 Score=20.79 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=75.3
Q ss_pred EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC--CCCcccE-EEEEeecC---CcceeEEEEE-EEEeeC
Q 047051 6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG--DGGVGTI-KKFNFTEA---VKEFRYVKDR-VEIMDN 78 (164)
Q Consensus 6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG--dg~~G~v-R~~~~~~g---~~~~~~~kEr-l~~~D~ 78 (164)
+..|..++..++++|..+ .+.. ...+|-|. +++|++++- ++. +| |.++.... +++-..+-=+ .....+
T Consensus 49 ~R~Egvv~~~~~ev~d~v-~~~~-~r~~Wd~~-v~~~~Iie~Id~dt--~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d 123 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHI-RPGP-YRLDWDSL-MTSMDIIEEFEENC--CVMRYTTAGQLLNIISPREFVDFSYTTQYED 123 (202)
T ss_pred EEEEEEecCCHHHHHHHH-hccc-chhcccch-hhheeHhhhhcCCc--EEEEEEcccCCcCccCccceEEEEEEEEeCC
Confidence 566778899999999996 6755 36799985 999999874 321 22 33333322 1111111111 111222
Q ss_pred CCcEEEEEEEeccccccc----eeEEEEEEEEeeCCCC--ceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHH
Q 047051 79 ENHVFRYSIVEGGILGFK----VNSYVADVTFTSSSDG--DCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAER 151 (164)
Q Consensus 79 ~~~~~~Y~i~eg~~~~~~----~~~y~~ti~v~~~~dg--~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~ 151 (164)
.-.+..-++.-... .| -.++-+-+-+.|..++ .|.+.|-+..++++. ++...+ ..+.+.+..++..+.+
T Consensus 124 ~~~s~gvs~~~~~~--ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~--LPqsiIdq~~~~~~~~F~~~Lrk 199 (202)
T cd08902 124 GLLSCGVSIEYEEA--RPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM--LPQSAVDTAMASTLVNFYSDLKK 199 (202)
T ss_pred CeEEEEeeecCCCC--CCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC--ccHHHHHHHhhHHHHHHHHHHHH
Confidence 22222223221111 11 1223334566787665 789999999888853 444434 2355566666666666
Q ss_pred HH
Q 047051 152 FL 153 (164)
Q Consensus 152 ~l 153 (164)
+|
T Consensus 200 ~~ 201 (202)
T cd08902 200 AL 201 (202)
T ss_pred hc
Confidence 54
No 92
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=20.40 E-value=3.9e+02 Score=21.79 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=34.2
Q ss_pred ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051 96 KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL 154 (164)
Q Consensus 96 ~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 154 (164)
.-..++++++=.+.++=.|.++|++.|...+ . .++.+.+++.++..-.
T Consensus 90 ~aNyikGtV~pvpgGg~~g~as~Kl~F~~GG--------~---ieFgq~~l~~~s~a~r 137 (261)
T KOG3294|consen 90 GANYIKGTVQPVPGGGWEGEASFKLTFNEGG--------C---IEFGQLLLQAASRASR 137 (261)
T ss_pred ccceeeeeEeecCCCCccceeEEEEEecCCC--------c---hhHHHHHHHHHHHHHh
Confidence 5567889988877764479999999998665 1 3556666666666543
No 93
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.01 E-value=2.3e+02 Score=23.16 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=26.4
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051 117 KLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL 160 (164)
Q Consensus 117 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 160 (164)
.|.+.+++....... ++. .+....+.+.+|+++..+|+-|
T Consensus 251 ~~~i~~~~~~~~~~~-~d~---~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPPL-DDA---EATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCCC-CCH---HHHHHHHHHHHHHHHHcCchHH
Confidence 466666665332222 222 4566777789999999999986
Done!