Query 047053
Match_columns 192
No_of_seqs 118 out of 952
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 100.0 1.7E-27 3.6E-32 187.1 17.3 117 38-159 2-123 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.9 1.1E-22 2.5E-27 160.8 16.0 118 38-160 5-127 (151)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 2.3E-17 5E-22 124.1 17.1 138 39-184 3-140 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 6.6E-16 1.4E-20 116.2 20.3 137 36-184 1-139 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 2.4E-14 5.2E-19 109.6 16.7 137 40-185 2-144 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.6 2E-13 4.3E-18 102.4 16.1 136 40-185 2-140 (140)
7 cd07819 SRPBCC_2 Ligand-bindin 99.5 2.5E-12 5.4E-17 97.1 16.8 136 37-182 2-139 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.5 1.2E-12 2.5E-17 100.0 14.6 138 40-185 2-142 (142)
9 cd08862 SRPBCC_Smu440-like Lig 99.5 3.8E-12 8.2E-17 96.0 16.4 135 39-185 3-138 (138)
10 cd07818 SRPBCC_1 Ligand-bindin 99.5 8.5E-12 1.8E-16 96.1 16.9 139 37-185 2-150 (150)
11 cd07822 SRPBCC_4 Ligand-bindin 99.4 2.4E-11 5.3E-16 91.2 15.8 138 39-184 2-141 (141)
12 cd07817 SRPBCC_8 Ligand-bindin 99.4 2.7E-11 5.8E-16 91.5 14.5 134 39-185 2-139 (139)
13 cd07813 COQ10p_like Coenzyme Q 99.3 2.7E-11 5.8E-16 92.5 13.1 135 41-185 3-137 (138)
14 cd08860 TcmN_ARO-CYC_like N-te 99.3 4.4E-11 9.6E-16 93.8 14.4 140 39-187 3-146 (146)
15 cd07814 SRPBCC_CalC_Aha1-like 99.3 7.8E-11 1.7E-15 88.8 14.6 137 39-185 2-139 (139)
16 cd07812 SRPBCC START/RHO_alpha 99.3 3.6E-10 7.9E-15 82.2 15.9 134 40-181 2-139 (141)
17 cd07825 SRPBCC_7 Ligand-bindin 99.3 1.6E-10 3.4E-15 88.3 14.1 139 39-184 2-144 (144)
18 cd07824 SRPBCC_6 Ligand-bindin 99.2 2E-09 4.3E-14 83.3 15.3 105 41-156 5-112 (146)
19 cd05018 CoxG Carbon monoxide d 99.1 2.3E-09 5.1E-14 81.1 13.2 136 39-183 3-143 (144)
20 cd07820 SRPBCC_3 Ligand-bindin 99.1 1.4E-08 3E-13 77.7 15.3 108 40-157 2-113 (137)
21 PF03364 Polyketide_cyc: Polyk 99.0 1.1E-08 2.5E-13 76.8 12.8 128 45-180 1-130 (130)
22 PRK10724 hypothetical protein; 98.8 1.9E-07 4.1E-12 74.4 13.8 139 38-187 16-155 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 98.8 1.8E-07 3.9E-12 72.3 12.2 135 41-184 3-145 (146)
24 cd08898 SRPBCC_CalC_Aha1-like_ 98.7 5.9E-07 1.3E-11 68.3 13.7 134 39-184 3-144 (145)
25 cd08899 SRPBCC_CalC_Aha1-like_ 98.7 6.1E-07 1.3E-11 70.5 12.7 128 37-186 11-138 (157)
26 cd08894 SRPBCC_CalC_Aha1-like_ 98.6 3E-06 6.6E-11 65.0 14.4 134 39-185 2-139 (139)
27 cd08893 SRPBCC_CalC_Aha1-like_ 98.5 7.2E-06 1.6E-10 61.4 14.4 130 40-185 3-136 (136)
28 cd07826 SRPBCC_CalC_Aha1-like_ 98.4 1.4E-05 3.1E-10 61.7 14.1 137 39-184 2-141 (142)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.4 2.7E-05 5.9E-10 59.8 15.5 136 39-185 2-143 (143)
30 cd08896 SRPBCC_CalC_Aha1-like_ 98.4 1.5E-05 3.3E-10 61.6 13.5 134 40-184 3-145 (146)
31 COG3427 Carbon monoxide dehydr 98.3 1.1E-05 2.4E-10 63.6 11.8 104 42-155 6-112 (146)
32 cd08895 SRPBCC_CalC_Aha1-like_ 98.3 7.5E-05 1.6E-09 57.6 15.8 133 39-184 2-145 (146)
33 cd08876 START_1 Uncharacterize 98.3 0.00012 2.7E-09 58.9 17.1 142 37-183 41-194 (195)
34 cd08897 SRPBCC_CalC_Aha1-like_ 98.3 6.5E-05 1.4E-09 57.1 14.2 128 39-185 2-133 (133)
35 COG5637 Predicted integral mem 98.2 6E-05 1.3E-09 61.4 12.6 139 37-189 70-214 (217)
36 cd08891 SRPBCC_CalC Ligand-bin 98.1 0.00029 6.3E-09 54.5 14.3 132 40-185 3-149 (149)
37 cd08901 SRPBCC_CalC_Aha1-like_ 98.0 0.00019 4.1E-09 54.8 12.9 129 39-185 2-132 (136)
38 cd08892 SRPBCC_Aha1 Putative h 97.9 0.00087 1.9E-08 50.6 14.4 123 39-184 2-125 (126)
39 PF06240 COXG: Carbon monoxide 97.8 0.00027 5.9E-09 54.6 10.5 104 42-155 2-108 (140)
40 PF08327 AHSA1: Activator of H 97.8 0.00048 1E-08 50.7 10.8 120 46-184 1-124 (124)
41 COG3832 Uncharacterized conser 97.6 0.0029 6.2E-08 49.6 13.1 93 37-135 8-104 (149)
42 COG2867 Oligoketide cyclase/li 97.2 0.0049 1.1E-07 48.6 10.0 135 40-188 5-140 (146)
43 PTZ00220 Activator of HSP-90 A 96.9 0.018 3.8E-07 44.1 10.6 91 45-152 1-93 (132)
44 COG4276 Uncharacterized conser 96.9 0.085 1.8E-06 41.3 14.0 109 41-158 6-120 (153)
45 PF08982 DUF1857: Domain of un 96.6 0.038 8.1E-07 43.8 10.7 61 47-114 18-79 (149)
46 cd08868 START_STARD1_3_like Ch 96.3 0.38 8.2E-06 39.3 15.1 159 23-186 35-208 (208)
47 cd08905 START_STARD1-like Chol 96.1 0.42 9E-06 39.4 14.5 140 41-184 53-207 (209)
48 PF10698 DUF2505: Protein of u 95.9 0.56 1.2E-05 36.9 13.9 131 40-181 2-153 (159)
49 cd08863 SRPBCC_DUF1857 DUF1857 95.8 0.67 1.5E-05 36.4 15.4 79 27-118 3-82 (141)
50 cd08877 START_2 Uncharacterize 95.7 0.96 2.1E-05 37.1 15.7 154 24-185 33-214 (215)
51 cd08906 START_STARD3-like Chol 95.4 1.3 2.8E-05 36.6 16.0 148 33-185 47-208 (209)
52 cd08874 START_STARD9-like C-te 95.3 1.4 3E-05 36.6 15.3 120 33-156 43-176 (205)
53 cd08871 START_STARD10-like Lip 95.1 1.6 3.5E-05 35.9 17.1 139 43-186 53-203 (222)
54 cd08873 START_STARD14_15-like 94.4 0.78 1.7E-05 39.0 11.1 109 41-155 81-204 (235)
55 cd08911 START_STARD7-like Lipi 94.0 2.9 6.2E-05 34.3 15.6 150 33-185 42-206 (207)
56 cd08903 START_STARD5-like Lipi 93.9 3.1 6.7E-05 34.2 15.6 139 41-185 50-207 (208)
57 cd08869 START_RhoGAP C-termina 93.5 3.5 7.6E-05 33.5 14.4 134 41-183 48-194 (197)
58 cd00177 START Lipid-binding ST 92.5 4 8.7E-05 31.7 16.3 125 27-156 29-165 (193)
59 KOG3177 Oligoketide cyclase/li 91.1 3 6.4E-05 35.0 9.8 146 33-188 65-213 (227)
60 cd08913 START_STARD14-like Lip 88.5 14 0.00031 31.3 15.5 109 41-155 85-209 (240)
61 cd08908 START_STARD12-like C-t 88.0 14 0.00031 30.6 14.6 137 36-184 53-202 (204)
62 cd08914 START_STARD15-like Lip 87.5 12 0.00026 31.9 11.2 37 41-77 82-118 (236)
63 cd08870 START_STARD2_7-like Li 83.9 22 0.00047 29.0 17.6 137 43-183 56-206 (209)
64 smart00234 START in StAR and p 83.1 22 0.00047 28.3 15.6 140 41-186 49-203 (206)
65 cd08910 START_STARD2-like Lipi 82.6 25 0.00055 28.8 13.7 136 42-184 54-205 (207)
66 cd08867 START_STARD4_5_6-like 79.1 32 0.0007 27.8 15.8 138 40-182 49-204 (206)
67 PF05586 Ant_C: Anthrax recept 77.9 0.94 2E-05 32.9 0.6 55 21-90 36-91 (95)
68 cd08904 START_STARD6-like Lipi 75.7 44 0.00096 27.6 15.8 138 41-182 50-202 (204)
69 KOG2936 Uncharacterized conser 69.4 36 0.00078 30.0 8.4 117 37-173 173-290 (301)
70 PF01852 START: START domain; 58.8 88 0.0019 24.6 15.7 139 41-187 50-204 (206)
71 cd08909 START_STARD13-like C-t 37.2 2.4E+02 0.0052 23.3 13.7 138 35-185 52-204 (205)
72 PF10313 DUF2415: Uncharacteri 23.9 1.8E+02 0.004 18.1 3.9 11 82-92 1-11 (43)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.96 E-value=1.7e-27 Score=187.08 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=104.2
Q ss_pred eEEEEEEEcCChhhHhhhhcCCCC--CCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053 38 TSLITQKINTPLSFVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR 115 (192)
Q Consensus 38 ~~~v~~~I~apa~~VW~~v~df~~--~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ 115 (192)
+...+++|+|||++||+++++|.+ ++.|+|.|++|++++|+|++||||.|+|.+|.+..+++|||+.+|+++|+|+|+
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~ 81 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYT 81 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEE
Confidence 356788999999999999999995 578999999999999998999999999988765568999999999999999999
Q ss_pred EEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC
Q 047053 116 VLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN 159 (192)
Q Consensus 116 ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~ 159 (192)
+++|++ +|++|+++|+|.|. +++ +|.+.|+++|++.++.
T Consensus 82 vveg~~~~~~~~~y~~t~~v~~~---~~~--~t~v~Wt~~ye~~~~~ 123 (148)
T cd07816 82 VIEGDVLKDGYKSYKVEIKFVPK---GDG--GCVVKWTIEYEKKGDA 123 (148)
T ss_pred EEecccccCceEEEEEEEEEEEC---CCC--CEEEEEEEEEEECCCC
Confidence 999987 59999999999998 343 4999999999876653
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.90 E-value=1.1e-22 Score=160.84 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=99.9
Q ss_pred eEEEEEEEcCChhhHhhhhcCCCC-CCccCc-ccceeEeecCCCCCC-eEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053 38 TSLITQKINTPLSFVWPFVRDFTN-PDKYKN-FIRSCTMKVGAGEVG-SVRDVNIISGPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 38 ~~~v~~~I~apa~~VW~~v~df~~-~~~w~p-~v~s~~~~eGdG~vG-~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
+.+.++++++||+++|++++...+ +++..| .|+++++++|||++| +||.|+|..|.|..++|||++.+|+++++++|
T Consensus 5 ~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y 84 (151)
T PF00407_consen 5 KLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITY 84 (151)
T ss_dssp EEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEE
Confidence 456778999999999999997444 455555 899999999998777 99999999888878999999999999999999
Q ss_pred EEEeCCC--CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCC
Q 047053 115 RVLGGDH--RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS 160 (192)
Q Consensus 115 ~ileg~~--p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~ 160 (192)
+++||++ .+++|..++++.|. ++| +|.+.|+.+|++..+..
T Consensus 85 ~viEGd~l~~~~~~~~~~~~~~~---~~g--~~v~k~t~~Ye~~~~~~ 127 (151)
T PF00407_consen 85 TVIEGDVLGDYKSFKSTIQKIPK---GDG--GCVVKWTIEYEKKGEDV 127 (151)
T ss_dssp EEEEETTGTTTEEEEEEEEEEEE---TTS--CEEEEEEEEEEESSTSC
T ss_pred EEEeccccccEEEEEEEEEecCC---CCC--ceEEEEEEEEEecCCCC
Confidence 9999996 88999999999988 444 49999999998765554
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.78 E-value=2.3e-17 Score=124.13 Aligned_cols=138 Identities=30% Similarity=0.456 Sum_probs=118.2
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
...+.+|++|+++||+++.|+.++..|.|.+.++++.++..++|+++.+.+..| ..++++++.+|+.++.+.|++.+
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~~~ 79 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYRIVE 79 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEEecC
Confidence 456789999999999999999999999999999988766436899999998766 57889999999876899999999
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
|+.++.++.+++++.|. ++| +|.+.|+..++++.+.....+..++...+..+|++|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 80 GPLPVKNYVATIRVTPE---GDG--GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred CCCCcccceEEEEEEEC---CCC--ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 87888999999999998 343 49999999999875554566778889999999999998864
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.75 E-value=6.6e-16 Score=116.24 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=112.4
Q ss_pred ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053 36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR 115 (192)
Q Consensus 36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ 115 (192)
+++.++++.|++|+++||+++.|+.++..|.|.+.++++.+++ ++|..+.+... |. ..+.++++.++++++.+.|+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~-g~--~~~~~~i~~~~~~~~~~~~~ 76 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGG-GPGTERTVRVA-GR--GTVREEITEYDPEPRRITWR 76 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEEC-STEEEEEEEEC-SC--SEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcccc-ccceeEEEEec-cc--cceeEEEEEecCCCcEEEEE
Confidence 4678899999999999999999999999999999999987633 35666777754 32 47899999999889999999
Q ss_pred EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI-PEGNS-DDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~-~~g~~-~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
+. ..++.++..+++|.|. ++| |.|.|...+++ ..+.. ...+..+++..++..|++|++.+|
T Consensus 77 ~~--~~~~~~~~~~~~~~~~---~~g---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 77 FV--PSGFTNGTGRWRFEPV---GDG---TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EE--SSSSCEEEEEEEEEEE---TTT---EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE--ecceeEEEEEEEEEEc---CCC---EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 97 5688899999999998 454 99999999885 33332 455778889999999999999987
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.64 E-value=2.4e-14 Score=109.56 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=105.2
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC-CC-----CeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EV-----GSVRDVNIISGPPATTSTERLEMLDDENHILS 113 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG-~v-----G~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~ 113 (192)
..++.|++|+++||+++.|+.+.+.|.|.+.+|+++++.+ +. |..+.+.. ... ..+..++.+.++.++.++
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~~i~ 78 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFF--KFE-ARVVLELREREEFPRELD 78 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEee--eee-EEEEEEEEEecCCCceEE
Confidence 3578999999999999999999999999999999886643 11 11111111 011 234556777776688999
Q ss_pred EEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 114 Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
|++++| ++..|.++.++.|. +++| +|.+.|...+++..+.....+..+++..+...|++|++.+|.
T Consensus 79 ~~~~~g--~~~~~~g~w~~~~~--~~~~--~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 79 FEMVEG--DFKRFEGSWRLEPL--ADGG--GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EEEcCC--chhceEEEEEEEEC--CCCC--eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999988 57899999999998 3313 499999999998766666777788889999999999999874
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=2e-13 Score=102.41 Aligned_cols=136 Identities=14% Similarity=0.038 Sum_probs=103.3
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-CCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-GEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
+.++.|++|+++||+++.|+.++..|.|.+.+++...+. .++|+...+....+.....++++++.+|+ ++.+.|....
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~~~~ 80 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFRGSS 80 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEEecC
Confidence 457899999999999999999999999999888876543 37898888866432112357899999986 7889999877
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG--NSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g--~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
+++ .+..++++.+. ++ +|.+.|+..++.... .....+...+...+...|++||+.+|.
T Consensus 81 ~~~---~~~~~~~~~~~---~~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 81 GPF---PYEDTYTFEPV---GG---GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred CCc---ceEEEEEEEEc---CC---ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 633 47899999987 44 399999998886321 112335556677788899999998873
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.51 E-value=2.5e-12 Score=97.10 Aligned_cols=136 Identities=10% Similarity=0.008 Sum_probs=94.4
Q ss_pred eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCCCCceeEEEEEEEec-CCceEEE
Q 047053 37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPATTSTERLEMLDD-ENHILSF 114 (192)
Q Consensus 37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~p~~~vkErL~~iD~-~~~~~~Y 114 (192)
.+.+.++.|+||+++||+++.|+.+++.|.|.+.+++++++ +++.+...++.+..+ + ...+-+..++. ..+.++|
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~ 78 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY-G--IKDTYALEYTWDGAGSVSW 78 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeee-e--EEEEEEEEEEEcCCCcEEE
Confidence 45677899999999999999999999999999999998654 333333344444322 1 11122223322 2578999
Q ss_pred EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053 115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182 (192)
Q Consensus 115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ 182 (192)
+..++. +...+.+++++.|. ++| |.|.|+..+++.-+.....+..+........+++|++.
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~---~~~---t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 79 TLVEGE-GNRSQEGSYTLTPK---GDG---TRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEeccc-ceeEEEEEEEEEEC---CCC---EEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 999874 67889999999998 443 99999998886444444444455555566666666654
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.50 E-value=1.2e-12 Score=99.97 Aligned_cols=138 Identities=14% Similarity=0.031 Sum_probs=101.4
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEee-cCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNII-SGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
+.+++|++|+++||+++.|+.+.+.|+|. .+++.+++.++...++.+... .|. ..-.+....+|+.++++.|..++
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~~~ 78 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVFRQEE 78 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEEEEee
Confidence 45789999999999999999999999998 555544433212245545443 232 22224455678878899999998
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE--GNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~--g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
++.++..+.++..|.|. +++ +|.|.|..++++.. +.....+..++...+...|++||+.+|+
T Consensus 79 ~~~~~~~~~g~w~~~~~---~~~--~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 79 PPPPVASMSGEWRFEPL---GGG--GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CCCChhhheeEEEEEEC---CCC--cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 76688999999999998 433 49999999887653 3344556667777789999999999985
No 9
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.49 E-value=3.8e-12 Score=96.05 Aligned_cols=135 Identities=16% Similarity=0.024 Sum_probs=102.1
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
.+.++.|+||+++||+++.|+.+++.|.|.+.++++..+.+++|+..+++...+ ..+..++.++++ +++|+|+...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p-~~~~~~~~~~ 78 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRP-GHSFTWTGPA 78 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecC-CCEEEEEecC
Confidence 467789999999999999999999999999999988754326787766665432 356788999986 5678887653
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG-NSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g-~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
+...+..++++.+. +++ +|.+.+..++..+.+ .....+...++..+...|++||+.+|.
T Consensus 79 ---~~~~~~~~~~~~~~---~~~--~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 79 ---PGISAVHRHEFEAK---PDG--GVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred ---CCEEEEEEEEEEEc---CCC--cEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 23466789999887 323 499999988875432 223456677788899999999998873
No 10
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.46 E-value=8.5e-12 Score=96.15 Aligned_cols=139 Identities=13% Similarity=0.035 Sum_probs=101.7
Q ss_pred eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeE---e--ecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCce
Q 047053 37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCT---M--KVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHI 111 (192)
Q Consensus 37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~---~--~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~ 111 (192)
.+.+.++.|++|+++||+++.|+.++..|.|.+..++ . ..+..++|+...+....+. .....++.++++ +++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~~~ 78 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-NER 78 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-CcE
Confidence 5678889999999999999999999999999655432 1 1123368988777665421 233567788876 778
Q ss_pred EEEEEEeCCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 112 LSFRVLGGDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS----DDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 112 ~~Y~ileg~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~----~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
+.|++..++ ++ ..+.+++++.|. ++ +|.+.|+.+++.+.+.. ...+..+++..+..+|++||+.+|+
T Consensus 79 i~~~~~~~~-~~~~~~~~~~~~~~~---~~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 79 IEYELRFIK-PFEATNDVEFTLEPV---GG---GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEEEEecC-CccccceEEEEEEEc---CC---ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 999998532 34 478899999998 44 39999999998764322 1334456677788888999998874
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.40 E-value=2.4e-11 Score=91.25 Aligned_cols=138 Identities=14% Similarity=0.045 Sum_probs=95.4
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecC-CCCceeEEEEEEEecCCceEEEEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISG-PPATTSTERLEMLDDENHILSFRVL 117 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G-~p~~~vkErL~~iD~~~~~~~Y~il 117 (192)
...++.|++|+++||+++.|+.++..|.|.+..+.... .++|....+.+..+ .....+.++++++|+ ++++.|+..
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~~ 78 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRGG 78 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEec
Confidence 45678999999999999999999999999876654431 34677777766532 122467888999997 778999998
Q ss_pred eCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 118 GGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN-SDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 118 eg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~-~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
.++.....+..++.|.|. +++ +|.+.|...+....+. ........++..++..++.|+..+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~---~~~--~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 79 LPFPGLLDGEHSFELEPL---GDG--GTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred CCCCcEeeEEEEEEEEEc---CCC--cEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 876554567789999987 333 4888888766532211 1122334445556666666666654
No 12
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=2.7e-11 Score=91.47 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=97.8
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
++.+++|++|++.||+++.|+.+.+.|.|.+.++++..|. +.-..+....|.. .....++..+++ ++.+.|....
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~~ 76 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSVE 76 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEECC
Confidence 3457899999999999999999999999999999887442 2222233332432 345566666666 5569999877
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSD----DDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~----~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
|. + .+.+++.+.+. +++ +|.+.+...++++.+... ..+..+++..+...|++||+.||.
T Consensus 77 ~~--~-~~~~~~~f~~~---~~~--~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE~ 139 (139)
T cd07817 77 GA--D-PNAGSVRFRPA---PGR--GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVET 139 (139)
T ss_pred CC--C-CcceEEEEEEC---CCC--CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhhC
Confidence 64 3 67899999987 333 499999999998754432 234556677788999999999873
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.35 E-value=2.7e-11 Score=92.53 Aligned_cols=135 Identities=10% Similarity=0.070 Sum_probs=101.8
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCC
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD 120 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~ 120 (192)
-+++|++|++.||+++.|+.+.+.|.|.+.+++++++.+ .+...++...-+.-...+..++. +++ ++++++..++|
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g- 78 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDG- 78 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCC-
Confidence 467899999999999999999999999999999987654 23334444432211123445554 666 67899999988
Q ss_pred CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 121 HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 121 ~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
+++.+.++.++.|. ++| +|.|.|...+++.-+.....+..+++......|+++++.++.
T Consensus 79 -~~~~~~g~w~~~p~---~~~--~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 79 -PFKHLEGEWRFKPL---GEN--ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred -ChhhceeEEEEEEC---CCC--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999998 434 499999999998654444556677788888888888888764
No 14
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.34 E-value=4.4e-11 Score=93.84 Aligned_cols=140 Identities=15% Similarity=0.105 Sum_probs=100.7
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC-CCCeEEEEEe-ecCCCCceeEEEEEEEecCCceEEEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVRDVNI-ISGPPATTSTERLEMLDDENHILSFRV 116 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG-~vG~VR~~~~-~~G~p~~~vkErL~~iD~~~~~~~Y~i 116 (192)
.+.+++|++||+.||+++.|+.+.+.|.|.+.+++++++++ ++|+--.+.+ .+|.+..+..|+ .+|+..+++.+.-
T Consensus 3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~~~~ 80 (146)
T cd08860 3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTVRARR 80 (146)
T ss_pred ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEEEEEE
Confidence 45678999999999999999999999999999999876533 4553222223 234322333333 2677777777741
Q ss_pred EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053 117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE--GNSDDDTRLFVGTVVKLNLARLADLAMASF 187 (192)
Q Consensus 117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~--g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~ 187 (192)
. ...|+....++.+|.|. ++| |.|.+..+|+... +.....+...++..+...|++||+.||+.|
T Consensus 81 ~-~~~p~~~m~~~W~f~~~---~~g---T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 81 V-ETGPFAYMNIRWEYTEV---PEG---TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred e-cCCCcceeeeeEEEEEC---CCC---EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 1 22479999999999998 444 9999999887653 233344667778889999999999999854
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.33 E-value=7.8e-11 Score=88.76 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=97.0
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
...+++|+||++.||+++.|+.+++.|.|.+..+......| |+.+.+....++-...+..+++++|+ ++.+.|+...
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~-~~~i~~~~~~ 78 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEP-PRRLVFTWAF 78 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcC-CCeEEEEecc
Confidence 35678999999999999999999999988633332221223 77776544321111356888999997 6789999998
Q ss_pred CCC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 119 GDH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 119 g~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
++. +...+..++++.|. ++ +|.+.|+..+.++.+. .......+...+...|++||+.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~---~~---~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 79 SDETPGPETTVTVTLEET---GG---GTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred cCCCCCCceEEEEEEEEC---CC---CEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 754 56678999999998 44 3999999887764321 2234444566678888999998873
No 16
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=3.6e-10 Score=82.21 Aligned_cols=134 Identities=18% Similarity=0.075 Sum_probs=97.8
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-CCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-GEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
..++.|++|+++||+++.|+.++..|.|.+.++++..+. +..|....+.+..+. ......++..+++ +..++|.+..
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~ 79 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTG 79 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEec
Confidence 356899999999999999999999999999999887653 367777766654121 1356788888887 7789999998
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN---SDDDTRLFVGTVVKLNLARLAD 181 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~---~~~~~~~~l~~~~~~~L~~L~~ 181 (192)
++.. ..+..++++.+. +++ +|.+.|..+++++.+. ....+..+++..+...+++|++
T Consensus 80 ~~~~-~~~~~~~~~~~~---~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 80 GGGG-VDGTGEWRLEPE---GDG--GTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred CCCC-cceeEEEEEEEC---CCC--cEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 7655 689999999998 331 3999999998876544 2233444455545555555543
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=1.6e-10 Score=88.35 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=93.3
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC--CCCCeEEEEEeec-CCCCceeEEEEEEEecCCceEEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA--GEVGSVRDVNIIS-GPPATTSTERLEMLDDENHILSFR 115 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd--G~vG~VR~~~~~~-G~p~~~vkErL~~iD~~~~~~~Y~ 115 (192)
.++++.|+||+++||+++.|+.++..|.|.........++ -++|....+.+.. |.+ ..+..+++++++ +++++|+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~l~~~ 79 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEE-NRLIAWR 79 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECC-CCEEEEE
Confidence 4678999999999999999999999998742222222332 2688888777653 333 356677888987 6779998
Q ss_pred EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q 047053 116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDD-DTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~-~~~~~l~~~~~~~L~~L~~~ae 184 (192)
..-...+......++.+.+. ++| +|.+.+...|......... .+......-++..|++|++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~---~~g--~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 80 PGPAGQEPGGHRWRWELEPI---GPG--RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred ccCCCCCCCceeEEEEEEEC---CCC--cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 65222334456678889987 334 4999988887754321110 0112235557788888888775
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.17 E-value=2e-09 Score=83.33 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=76.4
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeec-C-CCCCCeEEEEEeecCCCC-ceeEEEEEEEecCCceEEEEEE
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-G-AGEVGSVRDVNIISGPPA-TTSTERLEMLDDENHILSFRVL 117 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~e-G-dG~vG~VR~~~~~~G~p~-~~vkErL~~iD~~~~~~~Y~il 117 (192)
-+..|++|+++||+++.|+..+..|.|.+.++++.+ | +.++|+.-++......+. ..+.-++.++++ ++.+.|..
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~- 82 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEVRA- 82 (146)
T ss_pred EEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEEEE-
Confidence 356899999999999999999999999999998876 3 336777655443321121 244556667766 77899985
Q ss_pred eCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053 118 GGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP 156 (192)
Q Consensus 118 eg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~ 156 (192)
+|++ . ...+++|.+. ++| |.|.+..+++.+
T Consensus 83 ~g~~--~-~~~~~~~~~~---~~g---t~vt~~~~~~~~ 112 (146)
T cd07824 83 SGDL--E-GVGRWTLAPD---GSG---TVVRYDWEVRTT 112 (146)
T ss_pred EEee--e-EEEEEEEEEc---CCC---EEEEEEEEEEcC
Confidence 5643 2 4788999987 443 999999888764
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.12 E-value=2.3e-09 Score=81.09 Aligned_cols=136 Identities=10% Similarity=-0.062 Sum_probs=88.9
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC-CceeEEEEEEEecCCceEEEEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP-ATTSTERLEMLDDENHILSFRVL 117 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p-~~~vkErL~~iD~~~~~~~Y~il 117 (192)
.+.+..|++|+++||+++.|+.++..|.|.+.+++..++ +.......+.+. +.. .-...-++.++|+ ++.+.+...
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP-NEYEATVKLKVG-PVKGTFKGKVELSDLDP-PESYTITGE 79 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC-CeEEEEEEEEEc-cEEEEEEEEEEEEecCC-CcEEEEEEE
Confidence 346789999999999999999999999999998877643 212211122221 100 1123456666665 467888876
Q ss_pred eC-CCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC---CHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 118 GG-DHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN---SDDDTRLFVGTVVKLNLARLADLA 183 (192)
Q Consensus 118 eg-~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~---~~~~~~~~l~~~~~~~L~~L~~~a 183 (192)
.. ......+.+++.+.|. ++ +|.+.|+..+++.-.. ....+..+++..+..-+++|++.+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~---~~---gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 80 GKGGAGFVKGTARVTLEPD---GG---GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EcCCCceEEEEEEEEEEec---CC---cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 53 2346789999999997 34 3999999998854221 233344455555666666676654
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.06 E-value=1.4e-08 Score=77.73 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=84.0
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-C--CCCeEEEEEeecCC-CCceeEEEEEEEecCCceEEEE
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-G--EVGSVRDVNIISGP-PATTSTERLEMLDDENHILSFR 115 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G--~vG~VR~~~~~~G~-p~~~vkErL~~iD~~~~~~~Y~ 115 (192)
+.+++|++|+++||+++.|..++..|.|.+.++++.+.+ | .+|+.-.+.+..+. +. ..+-+++++++ ++.+++.
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p-~~~f~~~ 79 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEP-PRRFVDE 79 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcC-CCeEEEE
Confidence 357899999999999999999999999998888886432 3 56787777776432 22 34556777876 6779999
Q ss_pred EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC
Q 047053 116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE 157 (192)
Q Consensus 116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~ 157 (192)
.+.| |+..+..+..+.|. ++ +|.+.+..+|++|-
T Consensus 80 ~~~G--~~~~w~h~~~f~~~---~~---gT~vt~~v~~~~p~ 113 (137)
T cd07820 80 QVSG--PFRSWRHTHRFEAI---GG---GTLMTDRVEYRLPL 113 (137)
T ss_pred eccC--CchhCEEEEEEEEC---CC---ceEEEEEEEEeCCc
Confidence 8887 56678888889887 34 39999999999863
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.01 E-value=1.1e-08 Score=76.80 Aligned_cols=128 Identities=17% Similarity=0.251 Sum_probs=84.2
Q ss_pred EcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCCCCcc
Q 047053 45 INTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQ 124 (192)
Q Consensus 45 I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~p~~ 124 (192)
|+||+++||+++.|+.+++.|.|.+.++++++.++. +..-.+....+........++....+ .+ +.+..++| +++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~g--~~~ 75 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPP-ER-IRFEQISG--PFK 75 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECT-TT-EEEESSET--TEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEe-ee-eeeeecCC--Cch
Confidence 689999999999999999999999999999876542 22223444432212344555554433 43 78888877 789
Q ss_pred eeEEEEEEEeeecCCC--CeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047053 125 NYRSVTSVNDFISEET--GEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA 180 (192)
Q Consensus 125 ~y~ati~v~p~~~~~~--g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~ 180 (192)
.+.++.++.+. ++ |...|.+.-.+.++++.+.....+..+++......|++|+
T Consensus 76 ~~~g~W~~~~~---~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 76 SFEGSWRFEPL---GGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEE---TTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEEEC---CCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999998 33 1124555555556655555555555666666666666553
No 22
>PRK10724 hypothetical protein; Provisional
Probab=98.81 E-value=1.9e-07 Score=74.38 Aligned_cols=139 Identities=9% Similarity=0.057 Sum_probs=99.0
Q ss_pred eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEee-cCCCCceeEEEEEEEecCCceEEEEE
Q 047053 38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNII-SGPPATTSTERLEMLDDENHILSFRV 116 (192)
Q Consensus 38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y~i 116 (192)
....++.|++|++++|+++.|..+.+.|.|.+.++++++-++. +.+..++.+ .|. ......|.. +++ ++++.+..
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~-~~~a~l~v~~~g~-~~~f~srv~-~~~-~~~I~~~~ 91 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG-QMTAAVDVSKAGI-SKTFTTRNQ-LTS-NQSILMQL 91 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC-EEEEEEEEeeCCc-cEEEEEEEE-ecC-CCEEEEEe
Confidence 5566789999999999999999999999999999988754321 223333332 122 124444544 454 45899999
Q ss_pred EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053 117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF 187 (192)
Q Consensus 117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~ 187 (192)
++| |++.+.+..++.|. +++ +|.|....+|+.........+..+.+.....-+++..+.|+++.
T Consensus 92 ~~G--pF~~l~g~W~f~p~---~~~--~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~y 155 (158)
T PRK10724 92 VDG--PFKKLIGGWKFTPL---SQE--ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVY 155 (158)
T ss_pred cCC--ChhhccceEEEEEC---CCC--CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 79999999999998 333 39999999998766555555555556666666666666666554
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.77 E-value=1.8e-07 Score=72.33 Aligned_cols=135 Identities=14% Similarity=0.082 Sum_probs=83.6
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCcee--EEEEEEEecCCceEEEEEEe
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTS--TERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~v--kErL~~iD~~~~~~~Y~ile 118 (192)
-+.+|++|+++||+++.|+..+..|.|.+++.+.. |++..+ -+++++-|.-...+ +=++.++++.++++++....
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~-~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVE-GDDEYK--GTVKVKLGPISASFKGTARLLEDDEAARRAVLEATG 79 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCceecccc-CCCeEE--EEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEE
Confidence 35789999999999999999999999998887765 322111 12233222100011 22466666458888887664
Q ss_pred CCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 119 GDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE---GNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 119 g~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~---g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
.+. .--....++++.|. ++ +|.|.|..+++..- ......+....+.++...+++|++.+|
T Consensus 80 ~~~~~~g~~~~~~~~~l~~~---~~---gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 80 KDARGQGTAEATVTLRLSPA---GG---GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred ecCCCcceEEEEEEEEEEec---CC---cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 212 11246667778775 34 49999999766422 122233455556666667777777765
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.72 E-value=5.9e-07 Score=68.27 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=82.8
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
.+.+++|+||+++||+++.|...+..|.+... +....|.+..| .+.+.++ ......=++.++++ ++.+.|+...
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p-~~~l~~~~~~ 76 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDP-PRRFSFRWHP 76 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCC-CccceEEEEEEeCC-CcEEEEEecC
Confidence 45678999999999999999999999987532 22222222223 2334322 11234567888887 7789998754
Q ss_pred CC----C---CcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 119 GD----H---RLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 119 g~----~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
.. . .......++.|.+. ++| |.|.+.-. +........+.............|..|++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~---~~g---T~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 77 PAIDPGEDYSAEPSTLVEFTLEPI---AGG---TLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred CCcccccccCCCCceEEEEEEEec---CCc---EEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 32 1 22345688899887 443 88888765 43221111112333455567788888888776
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=6.1e-07 Score=70.54 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=87.5
Q ss_pred eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEE
Q 047053 37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRV 116 (192)
Q Consensus 37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~i 116 (192)
-+..++.+|++|+++||+++.|+..+..|.+.. . ++-.+|...++.+..... ....-+++++|+ ++.+.|+.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-~-----~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p-~~~l~~~~ 82 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG-T-----GDLRVGGRVEFVMDDEEG-PNATGTILACEP-PRLLAFTW 82 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-C-----CCcccCceEEEEecCCCC-CccceEEEEEcC-CcEEEEEe
Confidence 357788999999999999999999999999832 1 222355555555543101 345678888887 67899988
Q ss_pred EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053 117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186 (192)
Q Consensus 117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~ 186 (192)
..++ .....++.|.+. ++ +|.+.......+.. .....+.......|+.|++.++..
T Consensus 83 ~~~~---~~~~~~~~l~~~---~~---gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 83 GEGG---GESEVRFELAPE---GD---GTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred cCCC---CCceEEEEEEEc---CC---CEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcCC
Confidence 7654 345678888876 34 38877766654322 133344555778899999988864
No 26
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.60 E-value=3e-06 Score=64.96 Aligned_cols=134 Identities=13% Similarity=0.026 Sum_probs=80.6
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCc--ccceeEeecCCCCC-CeEEEEEee-cCCCCceeEEEEEEEecCCceEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKN--FIRSCTMKVGAGEV-GSVRDVNII-SGPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p--~v~s~~~~eGdG~v-G~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
..++..|+||+++||+++.+...+..|++ ... +...+.+..+ |..|..-.. +|.. -...=+++++++ ++++.|
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p-~~~l~~ 78 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVFLEIEP-PERIVY 78 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEE
Confidence 46789999999999999999888888863 221 1111222223 443432222 2321 122346888987 778999
Q ss_pred EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
+...++. ....++.+.|. ++ +|.+.....+..++. ....+...+.......|++|++.+++
T Consensus 79 t~~~~~~---~~~v~~~~~~~---~~---gT~ltl~~~~~~~~~-~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 79 DHGSGPP---RFRLTVTFEEQ---GG---KTRLTWRQVFPTAAE-RCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EeccCCC---cEEEEEEEEEC---CC---CEEEEEEEEcCCHHH-HHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 8855421 35678888887 44 388877765543211 01112333455677888888888764
No 27
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.52 E-value=7.2e-06 Score=61.43 Aligned_cols=130 Identities=14% Similarity=-0.040 Sum_probs=79.9
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeC
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGG 119 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg 119 (192)
+.++.|+||+++||+++.|...+..|.+... + .++-.+|.--.+...+. ....+.=+++++++ ++.+.|+...+
T Consensus 3 ~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~---~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~~-~~~l~~~~~~~ 76 (136)
T cd08893 3 VYVTYIRATPEKVWQALTDPEFTRQYWGGTT-V---ESDWKVGSAFEYRRGDD-GTVDVEGEVLESDP-PRRLVHTWRAV 76 (136)
T ss_pred EEEEEecCCHHHHHHHHcCchhhhheecccc-c---ccCCcCCCeEEEEeCCC-cccccceEEEEecC-CCeEEEEEecC
Confidence 5678999999999999999999999976521 1 22223343323333321 11133455677775 66787777643
Q ss_pred CC----CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 120 DH----RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 120 ~~----p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
.. +-.....++.+.+. +++ |.+....+...+ +. .....+..-+...|++|++.+|.
T Consensus 77 ~~~~~~~~~~~~v~~~l~~~---~~~---t~l~~~~~~~~~-~~---~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 77 WDPEMAAEPPSRVTFEIEPV---GDV---VKLTVTHDGFPP-GS---PTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred CCcccCCCCCEEEEEEEEec---CCc---EEEEEEecCCCC-ch---hHHHhhhcCHHHHHHHHHHHhcC
Confidence 32 23467788888887 343 776666554322 11 23333455567788999998873
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.42 E-value=1.4e-05 Score=61.66 Aligned_cols=137 Identities=10% Similarity=-0.047 Sum_probs=81.7
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCccc-ceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceEEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFI-RSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHILSFR 115 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v-~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~Y~ 115 (192)
.+++.+++||+++||+++.+-..+..|...- -.+...+.|-.+|..-.+.+. +|.. ..+.=++.++++ ++++.|+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~~~ei~p-~~~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGVYHEVTP-PERIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEE
Confidence 4678999999999999999988888886531 122233333333433334343 2221 133456777887 6678777
Q ss_pred EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
---.+.+-.....++.+.+. ++| |.+.....+..++. .+......+..-....|++|++.++
T Consensus 80 ~~~~~~~~~~s~v~~~l~~~---~~g---T~l~l~~~~~~~~~-~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 80 EEFEGLPDGVALETVTFTEL---GGR---TRLTATSRYPSKEA-RDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred eEecCCCCCceEEEEEEEEC---CCC---EEEEEEEEeCCHHH-HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 54332333345778888887 443 88777655543211 1112333455667778888887764
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.41 E-value=2.7e-05 Score=59.80 Aligned_cols=136 Identities=13% Similarity=-0.005 Sum_probs=79.1
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcc--cceeEeecCCCCC-CeEEEEEe-ecCCCCceeEEEEEEEecCCceEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNF--IRSCTMKVGAGEV-GSVRDVNI-ISGPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~--v~s~~~~eGdG~v-G~VR~~~~-~~G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
..++..++||+++||+++.|-..+..|... --.+.....+-.+ |..+.... .+|.. ....=++.++|+ ++++.|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g~~~~~~p-~~~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEARYHDIVP-DERIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeEEEEEecC-CceEEE
Confidence 357889999999999999998888888642 1112222222223 44444322 23321 133446778887 777877
Q ss_pred EEEe--CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 115 RVLG--GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 115 ~ile--g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
+-.. ++.+......++.+.+. ++| |.+.-.......+.. +. ......-....|++|++.+++
T Consensus 80 t~~~~~~~~~~~~s~v~~~l~~~---~~g---T~l~~~~~~~~~~~~--~~-~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 80 TYTMHIGGTLLSASLATVEFAPE---GGG---TRLTLTEQGAFLDGD--DD-PAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEeeccCCccccceEEEEEEEEC---CCC---EEEEEEEEEeccccc--ch-hhhHHHHHHHHHHHHHHHHhC
Confidence 7642 22233345578888887 443 777766543221111 11 222344466678999988774
No 30
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.39 E-value=1.5e-05 Score=61.56 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=76.1
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcc----cceeEeecCCCCCCeEEEEEee-cCCCCceeEEEEEEEecCCceEEE
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNF----IRSCTMKVGAGEVGSVRDVNII-SGPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~----v~s~~~~eGdG~vG~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
.+++.|+||+++||+++.+...+..|++- +..+++.-..| |..+..-.. +|.. -...=++.++|+ ++++.|
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~~~~g~~-~~~~g~v~~i~p-~~~l~~ 78 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPG--GAFRTVMRGPDGEE-FPNPGCFLEVVP-GERLVF 78 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecC--cEEEEEEECCCCCE-ecceEEEEEEeC-CCEEEE
Confidence 57899999999999999998888888642 22222211123 544443212 2321 133456888987 777888
Q ss_pred EEE--eCCCCc-ce-eEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 115 RVL--GGDHRL-QN-YRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 115 ~il--eg~~p~-~~-y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
+-. ++..+. .. -..++.+.+. ++| |.+.....+..++ ..+.....-+..-....|++|++.++
T Consensus 79 t~~~~~~~~~~~~~~~~v~~~~~~~---~~g---T~Ltl~~~~~~~~-~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKPFMTAIITFEDE---GGG---TRYTARARHWTEA-DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCCcEEEEEEEEec---CCc---EEEEEEEEeCCHH-HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 743 221121 11 4578888887 443 7776654443211 01111111124557788888888775
No 31
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.35 E-value=1.1e-05 Score=63.61 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=74.9
Q ss_pred EEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC--ceeEEEEEEEecCCceEEEEEEeC
Q 047053 42 TQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA--TTSTERLEMLDDENHILSFRVLGG 119 (192)
Q Consensus 42 ~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~--~~vkErL~~iD~~~~~~~Y~ileg 119 (192)
+-.|++|+++||+++.|+..+....|.+++.+.. |+. -=+.-++.+ |.-. -..+=++..+|+.+++++...-.|
T Consensus 6 ~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~-g~e-~~~~v~l~i--g~l~~~~~g~~~~~~v~~~~~~~~i~g~G~ 81 (146)
T COG3427 6 TFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN-GDE-YTAKVKLKI--GPLKGTFSGRVRFVNVDEPPRSITINGSGG 81 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec-CCe-EEEEEEEee--cceeEEEEEEEEEccccCCCcEEEEEeecc
Confidence 4678999999999999999999999999998865 542 111111222 2111 123556667778888888888774
Q ss_pred CC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053 120 DH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI 155 (192)
Q Consensus 120 ~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~ 155 (192)
.. .+-+..+.+.+.|. ++| |++.|.+..+.
T Consensus 82 ~~~g~~~~~~~v~l~~~---g~g---t~v~w~~~~~~ 112 (146)
T COG3427 82 GAAGFADGTVDVQLEPS---GEG---TRVNWFADANV 112 (146)
T ss_pred cccceeeeeeEEEEEEc---CCC---cEEEEEEEccc
Confidence 44 77788899999987 443 99999998664
No 32
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.31 E-value=7.5e-05 Score=57.64 Aligned_cols=133 Identities=14% Similarity=-0.036 Sum_probs=78.1
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCccc-ceeEeecCCCCC-CeEEE-EEeecC------CCCceeEEEEEEEecCC
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFI-RSCTMKVGAGEV-GSVRD-VNIISG------PPATTSTERLEMLDDEN 109 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v-~s~~~~eGdG~v-G~VR~-~~~~~G------~p~~~vkErL~~iD~~~ 109 (192)
..+++.|+||+++||+++.|...+..|.+-- -.+.+...+-.+ |..+. +.+.++ .....+.=+++++++ +
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p-~ 80 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVP-N 80 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcC-C
Confidence 5688999999999999999999988886521 122222222222 33332 222221 111133346888887 6
Q ss_pred ceEEEEEEeC--CCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 110 HILSFRVLGG--DHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 110 ~~~~Y~ileg--~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
+++.|+..-. ..+ .....++.+.+. ++ +|.+.++...-+ .+ ........-....|++|++.++
T Consensus 81 ~~i~~~~~~~~~~~~-~~~~v~~~~~~~---~~---~T~lt~~~~~~~-~~----~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 81 ERIVYTDVFDDPSLS-GEMTMTWTLSPV---SG---GTDVTIVQSGIP-DG----IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred CEEEEEEEecCCCCC-ceEEEEEEEEec---CC---CEEEEEEEeCCC-ch----hhhhHHHHHHHHHHHHHHHHhc
Confidence 6788886422 122 345788888887 44 388888876432 21 1122344446667888887765
No 33
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.28 E-value=0.00012 Score=58.90 Aligned_cols=142 Identities=8% Similarity=-0.016 Sum_probs=90.3
Q ss_pred eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---CceeEEEEEEEecCCceEE
Q 047053 37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTSTERLEMLDDENHILS 113 (192)
Q Consensus 37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~vkErL~~iD~~~~~~~ 113 (192)
...-++..|++|+++||+++.|....+.|-|.+..+++++-.+.--.+-.+.+.-..| ...+..+-...+.++..+.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~ 120 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVT 120 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEE
Confidence 4445667899999999999999999999999999999876533112233333332222 1233332222332234455
Q ss_pred EEEEeCCC--C-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 114 FRVLGGDH--R-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183 (192)
Q Consensus 114 Y~ileg~~--p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a 183 (192)
..+.+.+. | ...+.+.+.+.|. +++ .|.+.+...+++.-......+..+....+...|++|++.|
T Consensus 121 i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~---~~~--~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 121 ITLEAAPEALPEQKGYVRIKTVEGQWTFTPL---GNG--KTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEeecCCccCCCCCCeEEceeceeeEEEEEC---CCC--eEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55544322 3 5677888899998 344 4999998888876555555555566666667777777665
No 34
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.26 E-value=6.5e-05 Score=57.10 Aligned_cols=128 Identities=12% Similarity=0.152 Sum_probs=77.3
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccce--eEeecCCCCCCeEEEEEe--ecCCCCceeEEEEEEEecCCceEEE
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRS--CTMKVGAGEVGSVRDVNI--ISGPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s--~~~~eGdG~vG~VR~~~~--~~G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
..+++.|+||+++||+++.|-..+..|.+.... +...+.|-.+|..-.+.+ .+|.....+.=++.++++ ++++.|
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~~l~~ 80 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HKLIEY 80 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECC-CCEEEE
Confidence 357899999999999999998888889543211 111122323444433333 233211123456778887 788999
Q ss_pred EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
+..++ ...++.+.+. ++| |.+.-+ +...+.. .......-...+|++|++.++.
T Consensus 81 ~~~~~------~~v~~~l~~~---~~g---T~l~l~--~~~~~~~----~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 81 TMEDG------REVEVEFTEE---GDG---TKVVET--FDAENEN----PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EcCCC------CEEEEEEEEC---CCC---EEEEEE--ECCCCCC----cHHHHHHHHHHHHHHHHHHhhC
Confidence 97532 3678888887 443 776644 3332211 1222344458889999988763
No 35
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.16 E-value=6e-05 Score=61.37 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=95.7
Q ss_pred eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec--CCCCceeEEEEEEEecCCceEEE
Q 047053 37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS--GPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~--G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
..++++++|++|++.||...+|+.+++.|.-.+.|+++.+-. . -+|.... |.-+.| +-+|+. |..+.+|.|
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk--r---SrW~~~ap~g~~v~W-ea~it~-d~~~e~I~W 142 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK--R---SRWKANAPLGLEVEW-EAEITK-DIPGERIQW 142 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCC--c---cceeEcCCCCceEEE-eehhhc-cCCCcEEee
Confidence 466788999999999999999999999999999999987432 1 3344432 221223 334553 566889999
Q ss_pred EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHhcccc
Q 047053 115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFV----GTVVKLNLARLADLAMASFKS 189 (192)
Q Consensus 115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l----~~~~~~~L~~L~~~ae~~~~~ 189 (192)
.-++|- --.-.+.++|.+. +++ .|.|.-..+|.+|-+........|+ +.-++.-|++.|...|.+..|
T Consensus 143 ~Sl~Ga--~v~NsG~VrF~~~--pg~---~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~q~s 214 (217)
T COG5637 143 ESLPGA--RVENSGAVRFYDA--PGD---STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENGQPS 214 (217)
T ss_pred ecCCCC--cCCCCccEEeeeC--CCC---ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHccCcc
Confidence 999982 1134567888877 434 3899999999987654433233333 334677788888888775544
No 36
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.05 E-value=0.00029 Score=54.49 Aligned_cols=132 Identities=12% Similarity=-0.031 Sum_probs=74.2
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCc-c-------cceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCce
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKN-F-------IRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHI 111 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p-~-------v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~ 111 (192)
..++.|+||+++||+++.+ .+..|++ . ...|++.-..| |..+. ...+|. ....=++.++++ +++
T Consensus 3 ~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~~-~~~~g~--~~~~g~v~~v~p-~~~ 74 (149)
T cd08891 3 RKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAG--GRWYE-IGEDGT--ECEWGTVLAWEP-PSR 74 (149)
T ss_pred EEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCC--cEEEE-ecCCCc--EeceEEEEEEcC-CCE
Confidence 4678999999999999998 4667754 2 13344422223 54443 222342 223456788887 667
Q ss_pred EEEEEEeCC--CCcc--eeEEEEEEEeeecCC-CCeeEEEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 112 LSFRVLGGD--HRLQ--NYRSVTSVNDFISEE-TGEVYCVVLESYVVDIPEGN--SDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 112 ~~Y~ileg~--~p~~--~y~ati~v~p~~~~~-~g~~~T~v~W~~~~~~~~g~--~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
+.|+-.-++ .+.. .-..++.+.+. + +| |.+.-....-...+. .+.........--...|++|++.+|
T Consensus 75 l~~tw~~~~~~~~~~~~~t~vt~~l~~~---~~~g---T~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 75 LVFTWQINADWRPDPDKASEVEVRFEAV---GAEG---TRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred EEEEeccCCCcCcCCCCceEEEEEEEEC---CCCC---eEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 888765211 1111 34678888887 4 43 777655543322211 1122222233345667888888876
Q ss_pred h
Q 047053 185 A 185 (192)
Q Consensus 185 ~ 185 (192)
+
T Consensus 149 ~ 149 (149)
T cd08891 149 K 149 (149)
T ss_pred C
Confidence 4
No 37
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.04 E-value=0.00019 Score=54.84 Aligned_cols=129 Identities=13% Similarity=0.021 Sum_probs=75.7
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
+..++.|+||+++||+++.+-..+..|++.-...++..| |.+ .+.|....+ .+.=++.++++ ++++.|+...
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~G----g~~-~~~~~~~~~--~~~g~~~~~~p-~~~l~~~w~~ 73 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLEEG----KTV-TWDWEMYGA--SVPVNVLEIEP-NKRIVIEWGD 73 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccccCC----CEE-EEEEEccCC--ceEEEEEEEcC-CCEEEEEecC
Confidence 346789999999999999999999887543233333322 433 344432222 22336777877 7789998754
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRL--FVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~--~l~~~~~~~L~~L~~~ae~ 185 (192)
++ + .-..++.+.+. ++| +|.+.-.-.. .+.. ..+.... ....-....|++|++.+++
T Consensus 74 ~~-~--~s~v~~~l~~~---~~g--gT~ltl~~~~-~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 74 PG-E--PTTVEWTFEEL---DDG--RTFVTITESG-FPGT-DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred CC-C--CEEEEEEEEEC---CCC--cEEEEEEECC-CCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 31 1 24578888887 323 3776544332 2222 1111111 1233467778899888875
No 38
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.92 E-value=0.00087 Score=50.63 Aligned_cols=123 Identities=8% Similarity=0.002 Sum_probs=74.3
Q ss_pred EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
..++..|+||+++||+++.+-..+..|.....+.....| |..+ +.+| .+.=++.++++ +++++|+---
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~G----G~~~---~~~g----~~~g~~~~i~p-~~~l~~~w~~ 69 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAKVG----GKFS---LFGG----NITGEFVELVP-GKKIVQKWRF 69 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCCCC----CEEE---EeCC----ceEEEEEEEcC-CCEEEEEEEc
Confidence 357899999999999999998888888754333333322 4443 3334 12345777876 6678777653
Q ss_pred CCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 119 GDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 119 g~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
.+.+- ..-..++.+.+. ++| |.+.-.-..-+.. .....-+++-...+++|++.++
T Consensus 70 ~~~~~~~~s~v~~~l~~~---~~g---T~ltl~~~g~~~~-----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 70 KSWPEGHYSTVTLTFTEK---DDE---TELKLTQTGVPAG-----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCCCcEEEEEEEEEC---CCC---EEEEEEEECCCCc-----hHHHHHhhHHHHHHHHHHHHhC
Confidence 22221 235577788876 343 7766555433321 1223335555567788887654
No 39
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.83 E-value=0.00027 Score=54.58 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=62.6
Q ss_pred EEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC-C-ceeEEEEEEEecCCceEEEEEEeC
Q 047053 42 TQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP-A-TTSTERLEMLDDENHILSFRVLGG 119 (192)
Q Consensus 42 ~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p-~-~~vkErL~~iD~~~~~~~Y~ileg 119 (192)
+.+|++|+++||+++.|...+....|.+++.+... +.--+.++ +.+ |.- . -..+=++.++|+.++. +..+-..
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~~~~-v~v--G~i~~~~~g~~~~~~~~~~~~~-~~~~~g~ 76 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKGKVK-VKV--GPIKGTFDGEVRITEIDPPESY-TLEFEGR 76 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEEEEE-EES--CCCEEEEEEEEEEEEEETTTEE-EEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEEEEE-EEe--ccEEEEEEEEEEEEEcCCCcce-Eeeeecc
Confidence 46899999999999999999999999999988764 21111111 111 210 0 1334566777775544 3444432
Q ss_pred CC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053 120 DH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI 155 (192)
Q Consensus 120 ~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~ 155 (192)
+. .-.+..+.+++... +++ .|.+.|+++++.
T Consensus 77 g~~~~~~~~~~~~~~~~---~~~--~T~v~~~~~~~~ 108 (140)
T PF06240_consen 77 GRGGGSSASANITLSLE---DDG--GTRVTWSADVEV 108 (140)
T ss_dssp ECTCCEEEEEEEEEEEC---CCT--CEEEEEEEEEEE
T ss_pred CCccceEEEEEEEEEcC---CCC--CcEEEEEEEEEE
Confidence 22 23355566666665 333 299999998774
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.78 E-value=0.00048 Score=50.68 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=70.9
Q ss_pred cCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCCC-Cc
Q 047053 46 NTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDH-RL 123 (192)
Q Consensus 46 ~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~-p~ 123 (192)
+||+++||+++.+...+..|.. ........ .| |.++... .+|.. ....=+++++++ ++++.|+.--++. +-
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~~~~--~G--g~~~~~~-~~g~~-~~~~~~v~~~~p-~~~i~~~~~~~~~~~~ 73 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEMDFR--PG--GSFRFMD-PDGGE-FGFDGTVLEVEP-PERIVFTWRMPDDPDG 73 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEEECS--TT--EEEEEEE-TTSEE-EEEEEEEEEEET-TTEEEEEEEEETSSSC
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCcceeeee--cC--CEEEEEe-cCCCC-ceeeEEEEEEeC-CEEEEEEEEccCCCCC
Confidence 6899999999999888899921 21122221 23 4454422 33311 123334888987 6679998654433 24
Q ss_pred ceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHH
Q 047053 124 QNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLF-VGTVVKLNLARLADLAM 184 (192)
Q Consensus 124 ~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~-l~~~~~~~L~~L~~~ae 184 (192)
.....++.|.+. ++ +|.+.-..+ ++. ...... +.......|.+|++.+|
T Consensus 74 ~~~~v~~~~~~~---~~---~T~l~~~~~~~~~------~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 74 PESRVTFEFEEE---GG---GTRLTLTHSGFPD------DDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEEEE---TT---EEEEEEEEEEEHS------HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEc---CC---cEEEEEEEEcCCc------cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466778888886 34 366554443 221 112221 45557777888888775
No 41
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0029 Score=49.60 Aligned_cols=93 Identities=12% Similarity=0.012 Sum_probs=60.5
Q ss_pred eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeE--eecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053 37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCT--MKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~--~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
-...++..|++|+++||+++.|-..+..|+. -..++ +.-| .|....+...+| +.....-++.++++ ++++.|
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~g---g~~~~~~~~~~g-~~~~~~~~~~~v~p-~~rIv~ 81 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTG---GGERVRFRGPDG-PVHSFEGEYLEVVP-PERIVF 81 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecC---CceEEeeecCCC-CeeecceEEEEEcC-CcEEEE
Confidence 3566889999999999999999999888886 22121 2112 133334444433 22245667778887 666766
Q ss_pred EEEeC--CCCcceeEEEEEEEee
Q 047053 115 RVLGG--DHRLQNYRSVTSVNDF 135 (192)
Q Consensus 115 ~ileg--~~p~~~y~ati~v~p~ 135 (192)
+-.-. +.+...-..++.+++.
T Consensus 82 tw~~~~~~~~~~~~~v~~~l~~~ 104 (149)
T COG3832 82 TWDFDEDGEPFLKSLVTITLTPE 104 (149)
T ss_pred EeccCCCCCcccCceEEEEEEEe
Confidence 66554 3355567788888886
No 42
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.21 E-value=0.0049 Score=48.55 Aligned_cols=135 Identities=12% Similarity=0.129 Sum_probs=90.5
Q ss_pred EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec-CCCCceeEEEEEEEecCCceEEEEEEe
Q 047053 40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS-GPPATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~-G~p~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
+.+..|.-+|+++++++.|....+.+.|.+..+.+.+.++ ...+=.++.+= |. ..+..=|.+ +++..+.+.-.+++
T Consensus 5 ~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~-~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~~~l~~ 81 (146)
T COG2867 5 ERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNE-RELIAELDVGFKGI-RETFTTRVT-LKPTARSIDMKLID 81 (146)
T ss_pred EeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCc-ceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhhhhhhc
Confidence 4567889999999999999999999999999888887754 22333333321 21 123333333 44555577777788
Q ss_pred CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053 119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFK 188 (192)
Q Consensus 119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~ 188 (192)
| |++...++.++.|. +++ .|.|.-..+|+... ....+.++.++......+-+..++-|+
T Consensus 82 G--PFk~L~~~W~F~pl---~~~--~ckV~f~ldfeF~s----~ll~~~~g~~f~~~a~~mv~aF~kRA~ 140 (146)
T COG2867 82 G--PFKYLKGGWQFTPL---SED--ACKVEFFLDFEFKS----RLLGALIGPVFKRLASKMVEAFEKRAK 140 (146)
T ss_pred C--ChhhhcCceEEEEC---CCC--ceEEEEEEEeeehh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 88999999999997 233 49999999988754 334444555666555555555555443
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.91 E-value=0.018 Score=44.09 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=51.6
Q ss_pred EcCChhhHhhhhcCCCCCCccC-cccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCC-CC
Q 047053 45 INTPLSFVWPFVRDFTNPDKYK-NFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD-HR 122 (192)
Q Consensus 45 I~apa~~VW~~v~df~~~~~w~-p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~-~p 122 (192)
++||+++||+++.|-..+..|+ +......+.. | |..|.+ .+ .+.=+..++|+ ++++.|+---.+ .+
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~~~~~d~~~--G--G~f~~~---~~----~~~G~~~ev~p-p~rlv~tw~~~~~~~ 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGSPAEMDAKV--G--GKFSLF---NG----SVEGEFTELEK-PKKIVQKWRFRDWEE 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCCCccccCCc--C--CEEEEe---cC----ceEEEEEEEcC-CCEEEEEEecCCCCC
Confidence 4799999999999988777774 2211222222 2 444433 23 13346677877 666776654222 11
Q ss_pred cceeEEEEEEEeeecCCCCeeEEEEEEEEE
Q 047053 123 LQNYRSVTSVNDFISEETGEVYCVVLESYV 152 (192)
Q Consensus 123 ~~~y~ati~v~p~~~~~~g~~~T~v~W~~~ 152 (192)
-..-..++.+.+. ++| +|.+.-...
T Consensus 69 ~~~s~vt~~~~~~---~~g--~T~lt~~~~ 93 (132)
T PTZ00220 69 DVYSKVTIEFRAV---EED--HTELKLTQT 93 (132)
T ss_pred CCceEEEEEEEeC---CCC--cEEEEEEEe
Confidence 1123578888885 333 377665544
No 44
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.085 Score=41.30 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=76.2
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec---CCCC-ceeEEEEEE--EecCCceEEE
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS---GPPA-TTSTERLEM--LDDENHILSF 114 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~---G~p~-~~vkErL~~--iD~~~~~~~Y 114 (192)
...+|+||.+.||+....-+++....|.-. +.+-+|+ +++..-++.++- |.|. ..-+-|+++ +|+ ..+++=
T Consensus 6 ~~~~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtD 82 (153)
T COG4276 6 YRTTITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTD 82 (153)
T ss_pred EeeEecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeee
Confidence 456899999999999998888777666433 3333442 344445554432 3332 244566777 776 677888
Q ss_pred EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC
Q 047053 115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG 158 (192)
Q Consensus 115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g 158 (192)
..+.||+|.-+..-+=++.+. ++ +|.+.-+.+|++|.+
T Consensus 83 v~i~gPfp~~~WrHtH~F~~e---gg---~TvliD~Vsye~p~g 120 (153)
T COG4276 83 VCITGPFPALNWRHTHNFVDE---GG---GTVLIDSVSYELPAG 120 (153)
T ss_pred eeecCCccceeeEEEeeeecC---CC---cEEEEeeEEeeccCc
Confidence 889998877677778888876 34 399999999998876
No 45
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.62 E-value=0.038 Score=43.77 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=42.3
Q ss_pred CChhhHhhhhc-CCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053 47 TPLSFVWPFVR-DFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 47 apa~~VW~~v~-df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y 114 (192)
-..++||.-+. .-.++..|.|.|.+|++++-. +..-.|.++|+ + ..++|++... + ...+.|
T Consensus 18 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~-~~~~~R~v~fg-~---~~v~E~v~~~-~-~~~V~f 79 (149)
T PF08982_consen 18 LTREQLWRGLVLKARNPQLFVPGIDSCEVLSES-DTVLTREVTFG-G---ATVRERVTLY-P-PERVDF 79 (149)
T ss_dssp --HHHHHHHHHHHHH-GGGT-TT--EEEEEEE--SSEEEEEEEET-T---EEEEEEEEEE-T-TTEEEE
T ss_pred cCHHHHHHHHHHHHhChhhCccccCeEEEEecC-CCeEEEEEEEC-C---cEEEEEEEEe-C-CcEEEE
Confidence 45778999864 566799999999999997543 35788999994 3 5899998754 3 567888
No 46
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.27 E-value=0.38 Score=39.35 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=88.9
Q ss_pred hhhhhhcCCCCCCceeEEEEEEEcCChhhHhh-hhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec-CCC---Cc
Q 047053 23 TIKTYHTFPPSPNTCTSLITQKINTPLSFVWP-FVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS-GPP---AT 96 (192)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~-~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~-G~p---~~ 96 (192)
-++-+-.+-|...+.. -.+..|++|+++|+. ++.|....+.|-+.+..+++++. ++..--+..+.... +.| ..
T Consensus 35 ~i~i~~r~~~~~~~~~-k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RD 113 (208)
T cd08868 35 GDVVYSRNVPGVGKVF-RLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRD 113 (208)
T ss_pred CCEEEEEEcCCCceEE-EEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccc
Confidence 3455555555544433 345788999999986 56788999999999998887655 32111122222111 122 23
Q ss_pred eeEEEEEEEecCCceEEEEEEeCC-C-------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCH-HHHHHH
Q 047053 97 TSTERLEMLDDENHILSFRVLGGD-H-------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSD-DDTRLF 167 (192)
Q Consensus 97 ~vkErL~~iD~~~~~~~Y~ileg~-~-------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~-~~~~~~ 167 (192)
.+--|....++....+...-++.+ . ....+.+-+.+.|. +++...|.+.|....++- |... -.+-.+
T Consensus 114 fV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~---~~~~~~t~v~~~~~~Dp~-G~iP~~lvN~~ 189 (208)
T cd08868 114 FVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL---PNNPNKCNFTWLLNTDLK-GWLPQYLVDQA 189 (208)
T ss_pred eEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEEC---CCCCCceEEEEEEEECCC-CCCcceeeehh
Confidence 443344334443333333333322 1 22456677788887 222236999999988864 3332 222233
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 047053 168 VGTVVKLNLARLADLAMAS 186 (192)
Q Consensus 168 l~~~~~~~L~~L~~~ae~~ 186 (192)
+....-..+++|++.++.|
T Consensus 190 ~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 190 LASVLLDFMKHLRKRIATL 208 (208)
T ss_pred hHHHHHHHHHHHHHHHhhC
Confidence 4444556677888877654
No 47
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.08 E-value=0.42 Score=39.44 Aligned_cols=140 Identities=8% Similarity=0.018 Sum_probs=82.1
Q ss_pred EEEEEcCChhhHh-hhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec-CCC---CceeEEEEEEEecCCceEEE
Q 047053 41 ITQKINTPLSFVW-PFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS-GPP---ATTSTERLEMLDDENHILSF 114 (192)
Q Consensus 41 v~~~I~apa~~VW-~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~-G~p---~~~vkErL~~iD~~~~~~~Y 114 (192)
.+..|++|+++++ .++-|....+.|-+.+.++++++- +...=-++.+...- +.+ ...+.-|....++.+..+..
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~ 132 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAG 132 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEE
Confidence 5679999999999 666789999999999999888654 21111123322111 111 23444444444443433222
Q ss_pred EEEeCC-C-------CcceeEEEEEEEeeecCC-CCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 115 RVLGGD-H-------RLQNYRSVTSVNDFISEE-TGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 115 ~ileg~-~-------p~~~y~ati~v~p~~~~~-~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
...+.+ + ....+.+-+.+.|. ++ .+ .|.+.|..-.||.-..+...+-.++-..-...|.+|++.++
T Consensus 133 ~s~~~~~~P~~~~~VR~~~~~~~w~l~p~--~~~~~--~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 133 MATHFGLMPEQKGFIRAENGPTCIVLRPL--AGDPS--KTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EeecCCCCCCCCCeEEEEeeccEEEEEEC--CCCCC--ceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 222222 1 23456677778887 22 13 59999999999644444444445555555667788887776
No 48
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.87 E-value=0.56 Score=36.93 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=68.2
Q ss_pred EEEEEEcCChhhHhhhhcCCCC----CCccCc---ccceeEeecCCCCCCeEEEE-Eee-cCCCC--------ceeEEEE
Q 047053 40 LITQKINTPLSFVWPFVRDFTN----PDKYKN---FIRSCTMKVGAGEVGSVRDV-NII-SGPPA--------TTSTERL 102 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~df~~----~~~w~p---~v~s~~~~eGdG~vG~VR~~-~~~-~G~p~--------~~vkErL 102 (192)
++++++++|+++||.++.|-.- ...... .+.+++. .|+| -.|+.. .+. +..|. ....+|-
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~ 78 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRT 78 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence 4678999999999999998221 111111 2233322 2343 111111 111 23341 1222333
Q ss_pred EEE---ecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC-CCCCHHHHHHHHHHHHHHHHHH
Q 047053 103 EML---DDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP-EGNSDDDTRLFVGTVVKLNLAR 178 (192)
Q Consensus 103 ~~i---D~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~-~g~~~~~~~~~l~~~~~~~L~~ 178 (192)
+.+ ++..+..+|++.-...|. ...+++.+.|. ++| |.+....++... +-.. ..++.++...+...|+.
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~---~~g---t~~~~~g~v~v~VPlvG-gkiE~~v~~~~~~~~~~ 150 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAPV-SISGTMRLRPD---GGG---TRLTVEGEVKVKVPLVG-GKIEKAVAENLRKLLEA 150 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCceE-EEEEEEEEecC---CCC---EEEEEEEEEEEEEcccc-HHHHHHHHHHHHHHHHH
Confidence 334 556677777765433444 78999999996 443 888888776542 2222 22444444444444444
Q ss_pred HHH
Q 047053 179 LAD 181 (192)
Q Consensus 179 L~~ 181 (192)
..+
T Consensus 151 e~~ 153 (159)
T PF10698_consen 151 EQE 153 (159)
T ss_pred HHH
Confidence 443
No 49
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.84 E-value=0.67 Score=36.42 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=58.1
Q ss_pred hhcCCCCCCceeEEEEEEEcCChhhHhhhh-cCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEE
Q 047053 27 YHTFPPSPNTCTSLITQKINTPLSFVWPFV-RDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEML 105 (192)
Q Consensus 27 ~~~~~~~~~~~~~~v~~~I~apa~~VW~~v-~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~i 105 (192)
.|+=+.||..+.-. -..+++|.-+ ..-..+..+.|.+.+|++++.++ --..|.++|+. ..++|+++.
T Consensus 3 ~~tvpIN~p~~~p~------LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~----~~v~e~vt~- 70 (141)
T cd08863 3 EHTVPINDPGNIPT------LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGP----AKIRETVTL- 70 (141)
T ss_pred cEEEecCCCCCCCc------cCHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECC----ceEEEEEEe-
Confidence 45555566555211 5788999986 46777999999999999986653 25669999974 378999874
Q ss_pred ecCCceEEEEEEe
Q 047053 106 DDENHILSFRVLG 118 (192)
Q Consensus 106 D~~~~~~~Y~ile 118 (192)
++ ...+.|.+-.
T Consensus 71 ~~-~~~v~f~~~~ 82 (141)
T cd08863 71 EP-PSRVHFLQAD 82 (141)
T ss_pred cC-CcEEEEEecC
Confidence 44 6679998876
No 50
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.69 E-value=0.96 Score=37.12 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=92.2
Q ss_pred hhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC-----cee
Q 047053 24 IKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA-----TTS 98 (192)
Q Consensus 24 ~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~-----~~v 98 (192)
++.+....|.-.....-++..|++|++.+.+++.|....+.|.|.+..++..+..+..-.+-.+.+ ..|. ..+
T Consensus 33 i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v 110 (215)
T cd08877 33 IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAV 110 (215)
T ss_pred eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE--eCceEecceEEE
Confidence 344444444443444556789999999999999999889999998887766544321222333333 2331 122
Q ss_pred E--EEEEEEecCCceEEEEE--EeCC----------C--------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053 99 T--ERLEMLDDENHILSFRV--LGGD----------H--------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP 156 (192)
Q Consensus 99 k--ErL~~iD~~~~~~~Y~i--leg~----------~--------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~ 156 (192)
. -.++.+++ +..+...+ +..+ + ....+.+-+.++|. ++| .|.+.+....+|.
T Consensus 111 ~~~~~~~~~~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~---~~~--~t~v~~~~~~DP~ 184 (215)
T cd08877 111 FRGFGVDRLEE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI---SPT--KCYLRFVANVDPK 184 (215)
T ss_pred EEEEEEeeecc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc---CCC--CeEEEEEEEcCCC
Confidence 1 11222323 33333222 2110 1 12456777888887 444 3888888888864
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 157 EG-NSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 157 ~g-~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
-. .+...+-.+...+....|.+|++.+++
T Consensus 185 g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 185 MSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 455656666777788888999888764
No 51
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.36 E-value=1.3 Score=36.57 Aligned_cols=148 Identities=9% Similarity=0.026 Sum_probs=81.2
Q ss_pred CCCceeEEEEEEEcCChhhHh-hhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEee-cCCC---CceeEEEEEEEe
Q 047053 33 SPNTCTSLITQKINTPLSFVW-PFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNII-SGPP---ATTSTERLEMLD 106 (192)
Q Consensus 33 ~~~~~~~~v~~~I~apa~~VW-~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~-~G~p---~~~vkErL~~iD 106 (192)
+. ++. -++..+++|++.++ .++.|......|-+.+.++++++- +..-=-++.++.. .+.| ...+.-|-..-+
T Consensus 47 ~~-~~f-k~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~ 124 (209)
T cd08906 47 HG-KTF-ILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERR 124 (209)
T ss_pred CC-cEE-EEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEec
Confidence 44 444 35678899999998 578999999999999999988654 2111111222221 1123 244444544444
Q ss_pred cCCce-EEEEEEeCCC-CcceeE-EE-----EEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047053 107 DENHI-LSFRVLGGDH-RLQNYR-SV-----TSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLAR 178 (192)
Q Consensus 107 ~~~~~-~~Y~ileg~~-p~~~y~-at-----i~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~ 178 (192)
.+... +..++.-..+ +.++|. +. +-+.|.+ .+.+ .|.+.|....+|--..+.-.+-.++....-.-|.+
T Consensus 125 ~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~-~~~~--~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08906 125 RDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSA-SNPS--VCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASH 201 (209)
T ss_pred CCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECC-CCCC--ceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44432 2222222222 233332 22 2333320 1233 59999999988643344444445555555566777
Q ss_pred HHHHHHh
Q 047053 179 LADLAMA 185 (192)
Q Consensus 179 L~~~ae~ 185 (192)
|++.++.
T Consensus 202 LR~~~~~ 208 (209)
T cd08906 202 LRQRIRD 208 (209)
T ss_pred HHHHHhh
Confidence 8777654
No 52
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.32 E-value=1.4 Score=36.55 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=70.0
Q ss_pred CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec--C--CCCceeEEEEEEEec
Q 047053 33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS--G--PPATTSTERLEMLDD 107 (192)
Q Consensus 33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~--G--~p~~~vkErL~~iD~ 107 (192)
..+...+ +.+|++|+++||+++.|...-+.|-+.++++++++- +....-++..+-.. . .+...+.-+....+.
T Consensus 43 ~~~~~~g--e~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~ 120 (205)
T cd08874 43 TYHGFLG--AGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEG 120 (205)
T ss_pred CcceEEE--EEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECC
Confidence 3455665 458899999999999999999999999999998765 22333333332111 1 233333333333333
Q ss_pred CCceEEEEEEeC-CCC--------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053 108 ENHILSFRVLGG-DHR--------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP 156 (192)
Q Consensus 108 ~~~~~~Y~ileg-~~p--------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~ 156 (192)
+...+...-+.. .+| ...+.+-..+.|. .++|...|.+......++-
T Consensus 121 ~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~--~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 121 ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPV--TVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEEC--ccCCCCcEEEEEEEEECCC
Confidence 333332322333 222 2345566677775 2232225889888888864
No 53
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.05 E-value=1.6 Score=35.92 Aligned_cols=139 Identities=6% Similarity=-0.071 Sum_probs=80.4
Q ss_pred EEE-cCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---CceeEEEEEEEecCCceEEEEEEe
Q 047053 43 QKI-NTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTSTERLEMLDDENHILSFRVLG 118 (192)
Q Consensus 43 ~~I-~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~vkErL~~iD~~~~~~~Y~ile 118 (192)
..+ ++|++.+++++.|...-..|-+.+..+++++--+.--.|....+....| ...+--|...-++....+...-++
T Consensus 53 ~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~ 132 (222)
T cd08871 53 AIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVK 132 (222)
T ss_pred EEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEecccc
Confidence 344 7999999999999888899999888887765422112333343432222 234433433333312122111122
Q ss_pred CC-CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053 119 GD-HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186 (192)
Q Consensus 119 g~-~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~ 186 (192)
.+ .| ...+.+-+.+.|. +++ .|.+.|....++--..+.-.+-.++....-..|++|++.+++.
T Consensus 133 ~~~~P~~~g~VR~~~~~~g~~i~p~---~~~--~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 133 HKKYPPRKGFVRAISLLTGYLIRPT---GPK--GCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred CCCCCCCCCeEEeEEEccEEEEEEC---CCC--CEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 22 2345666778887 333 4999999888864334444444555666667788888887654
No 54
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=94.37 E-value=0.78 Score=38.97 Aligned_cols=109 Identities=14% Similarity=0.019 Sum_probs=66.1
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec---CCCCceeEEEEEEE--ecCC-ceEE
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS---GPPATTSTERLEML--DDEN-HILS 113 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~---G~p~~~vkErL~~i--D~~~-~~~~ 113 (192)
++..+++|+++|++++.|...-..|-+...++++++- +...+-++ +.+.. -.|...+.-+-... +... ..+.
T Consensus 81 ~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~ 159 (235)
T cd08873 81 VELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVA 159 (235)
T ss_pred EEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCCCeEEEE
Confidence 4567999999999999999999999999999998763 22234333 33321 11223333322222 2211 2333
Q ss_pred EEEEeCC-C-------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053 114 FRVLGGD-H-------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI 155 (192)
Q Consensus 114 Y~ileg~-~-------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~ 155 (192)
..-+..+ . ....+.+-+.+.|. ++| .|.|.+....+|
T Consensus 160 ~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~---~~~--~t~VtY~~~~dP 204 (235)
T cd08873 160 FRSVTLPRVPQTPGYSRTEVACAGFVIRQD---CGT--CTEVSYYNETNP 204 (235)
T ss_pred EeeeecccCCCCCCeEEEEEEeeeEEEEEC---CCC--cEEEEEEEEcCC
Confidence 3333311 1 34567788889997 444 488888777665
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=94.03 E-value=2.9 Score=34.34 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=87.1
Q ss_pred CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCC-eEEEEEeecCCC---CceeEEEEEEEecC
Q 047053 33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVG-SVRDVNIISGPP---ATTSTERLEMLDDE 108 (192)
Q Consensus 33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG-~VR~~~~~~G~p---~~~vkErL~~iD~~ 108 (192)
++-.....+....++|++.+.+++.|...-..|-+.+.++++++-+...+ -+-.+.+.--.| ...+--|-...|++
T Consensus 42 s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 121 (207)
T cd08911 42 TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE 121 (207)
T ss_pred CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence 34333333334459999999999999888889999888888876422112 222333322222 24666666667766
Q ss_pred CceE--EEEEEeC-C-------CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCH-HHHHHHHHHHHHHHHH
Q 047053 109 NHIL--SFRVLGG-D-------HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSD-DDTRLFVGTVVKLNLA 177 (192)
Q Consensus 109 ~~~~--~Y~ileg-~-------~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~-~~~~~~l~~~~~~~L~ 177 (192)
+..+ ...-++. . ..+..|.+.+.+.|.++.+++ +|.+.+.+-.+| .|... ..+-.+....+-.-|+
T Consensus 122 ~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~--~~~~~~~~~~dP-gG~IP~~lvN~~~~~~~~~~l~ 198 (207)
T cd08911 122 NKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEP--GFEFVLTYFDNP-GVNIPSYITSWVAMSGMPDFLE 198 (207)
T ss_pred CCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCC--CeEEEEEEEeCC-CCccCHHHHHHHHHhhccHHHH
Confidence 5432 1111222 1 145678899999987111122 477776665554 34333 3344455666677778
Q ss_pred HHHHHHHh
Q 047053 178 RLADLAMA 185 (192)
Q Consensus 178 ~L~~~ae~ 185 (192)
+|++++.+
T Consensus 199 ~l~~a~~~ 206 (207)
T cd08911 199 RLRNAALK 206 (207)
T ss_pred HHHHHHhc
Confidence 88887643
No 56
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.90 E-value=3.1 Score=34.22 Aligned_cols=139 Identities=9% Similarity=0.027 Sum_probs=74.8
Q ss_pred EEEEEcCChhhHhhhhcCCCCC--CccCcccceeEeecC-CCCCCeEEEEEee-c-C---CCCceeEEEEEEEecCC-ce
Q 047053 41 ITQKINTPLSFVWPFVRDFTNP--DKYKNFIRSCTMKVG-AGEVGSVRDVNII-S-G---PPATTSTERLEMLDDEN-HI 111 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~--~~w~p~v~s~~~~eG-dG~vG~VR~~~~~-~-G---~p~~~vkErL~~iD~~~-~~ 111 (192)
.+..+++++++|++++.|..+- ..|-+.+.++++++- ++...-+|. ... . + .+...+--|.....+++ ..
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~ 128 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTIS 128 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEE
Confidence 5678999999999999876554 799999999988765 432222332 111 0 1 12233332332233323 23
Q ss_pred EEEEEEeCC-C-Cccee--------EEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047053 112 LSFRVLGGD-H-RLQNY--------RSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLAD 181 (192)
Q Consensus 112 ~~Y~ileg~-~-p~~~y--------~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~ 181 (192)
+.+..++.+ . |-++| -+.++..|. +.+ .|.+.|....|+.-..+...+-.++-.....-|.+|++
T Consensus 129 i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~---~~~--~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~ 203 (208)
T cd08903 129 SNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG---EPD--KTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTK 203 (208)
T ss_pred EeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC---CCC--ceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHH
Confidence 333334442 1 22222 223333333 223 49999999989743344443434444444466677777
Q ss_pred HHHh
Q 047053 182 LAMA 185 (192)
Q Consensus 182 ~ae~ 185 (192)
....
T Consensus 204 ~~~~ 207 (208)
T cd08903 204 AVKA 207 (208)
T ss_pred HHhh
Confidence 6543
No 57
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=93.49 E-value=3.5 Score=33.55 Aligned_cols=134 Identities=14% Similarity=0.041 Sum_probs=79.0
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCCC---CceeEEEEEEEecCCc--eEEE
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPP---ATTSTERLEMLDDENH--ILSF 114 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~p---~~~vkErL~~iD~~~~--~~~Y 114 (192)
++.+|++++++|++.+.+.. ..|-+.+.++++++- +... .|-...+..-.| ...+.-|....+.++. .+.+
T Consensus 48 ~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~ 124 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDT-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVE 124 (197)
T ss_pred EEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCc-EEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEE
Confidence 45788999999999887653 789999889888654 2111 112222221112 2344444444333332 2233
Q ss_pred EEEeC--CCC-----cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 115 RVLGG--DHR-----LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183 (192)
Q Consensus 115 ~ileg--~~p-----~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a 183 (192)
.-++. .+| ...+.+-+-++|. ++| +|.|.+....|| -|....-..-..+.+.-..|++|++.+
T Consensus 125 ~Sv~~~~~~p~g~VR~~~~~~g~~i~p~---~~~--~t~vty~~~~Dp-~G~iP~wl~N~~~~~~~~~~~~l~~~~ 194 (197)
T cd08869 125 TSVEHTEPVPLGGVRAVVLASRYLIEPC---GSG--KSRVTHICRVDL-RGRSPEWYNKVYGHLCARELLRIRDSF 194 (197)
T ss_pred ECCcCCCCCCCCCEEEEEEeeeEEEEEC---CCC--CeEEEEEEEECC-CCCCCceeecchHhHHHHHHHHHHhhc
Confidence 33432 222 2345567778887 344 499999999885 455544444445677778888887754
No 58
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=92.53 E-value=4 Score=31.66 Aligned_cols=125 Identities=13% Similarity=0.010 Sum_probs=69.6
Q ss_pred hhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---CceeEEEEE
Q 047053 27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTSTERLE 103 (192)
Q Consensus 27 ~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~vkErL~ 103 (192)
+....+.......-.+.+|++|++.||+++.|......|-+.+.++++++-.+..-.+....+....| ...+--+-.
T Consensus 29 y~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~ 108 (193)
T cd00177 29 YTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRR 108 (193)
T ss_pred EEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEE
Confidence 33334432333333567899999999999999888889999999988876532113444455543333 222222222
Q ss_pred EEecCC-ceEEEEEEeCC-CCc-------ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053 104 MLDDEN-HILSFRVLGGD-HRL-------QNYRSVTSVNDFISEETGEVYCVVLESYVVDIP 156 (192)
Q Consensus 104 ~iD~~~-~~~~Y~ileg~-~p~-------~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~ 156 (192)
..++++ ..+...-++.+ .|- ..+.+-+.+.|. +++ .|.+.+....++-
T Consensus 109 ~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~---~~~--~~~vt~~~~~D~~ 165 (193)
T cd00177 109 RKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL---DPG--KTKVTYVLQVDPK 165 (193)
T ss_pred EEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC---CCC--CEEEEEEEeeCCC
Confidence 223322 22222222221 111 123455667776 344 4999999888864
No 59
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=91.13 E-value=3 Score=35.01 Aligned_cols=146 Identities=12% Similarity=0.086 Sum_probs=92.3
Q ss_pred CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC--ceeEEEEEEEecCCc
Q 047053 33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA--TTSTERLEMLDDENH 110 (192)
Q Consensus 33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~--~~vkErL~~iD~~~~ 110 (192)
+.++|+.+ ...+..+++.+++++++-...+.+.|.++++.++.-+.+-+.+-.+.. |.|. ....-+++..++
T Consensus 65 ~r~k~Y~e-rrligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeV--GFk~l~E~y~S~Vt~~~p--- 138 (227)
T KOG3177|consen 65 NREKAYSE-RRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEV--GFKPLDERYTSNVTCVKP--- 138 (227)
T ss_pred hHHHHHHH-HhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEe--cCcccchhheeeeEEecc---
Confidence 34566643 467899999999999999999999999999888644311133333333 5441 223334443333
Q ss_pred eEEEEEEeCCCCcceeEEEEEEEeeecC-CCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053 111 ILSFRVLGGDHRLQNYRSVTSVNDFISE-ETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFK 188 (192)
Q Consensus 111 ~~~Y~ileg~~p~~~y~ati~v~p~~~~-~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~ 188 (192)
.++|.+.-..--+.......++.|. . -.| .|.+....+|+.........+.-|.+.+.....++..+.|.++.+
T Consensus 139 ~l~kt~~~d~rLF~~L~t~Wsf~pg--~~~p~--tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~g 213 (227)
T KOG3177|consen 139 HLTKTVCADGRLFNHLITIWSFKPG--PNIPR--TCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKLYG 213 (227)
T ss_pred cceEEeeccccHHHhhhheeeeccC--CCCCC--eEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455554322234555666778886 2 123 488888888877555444555667788888888888888877654
No 60
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=88.52 E-value=14 Score=31.32 Aligned_cols=109 Identities=11% Similarity=0.053 Sum_probs=64.3
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecC-CC---CceeEEEEEEEecCCc---eE
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISG-PP---ATTSTERLEMLDDENH---IL 112 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G-~p---~~~vkErL~~iD~~~~---~~ 112 (192)
++..+++|+++|++++.|...-..|-+.+.+|++++- +... .+..+....- .| ...+.-+-...+.++. .+
T Consensus 85 ~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii 163 (240)
T cd08913 85 VEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVI 163 (240)
T ss_pred EEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEE
Confidence 4568999999999999999999999999999998754 3222 2444443221 12 2233222121221222 23
Q ss_pred EEEEEeCC-C-------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053 113 SFRVLGGD-H-------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI 155 (192)
Q Consensus 113 ~Y~ileg~-~-------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~ 155 (192)
....+.-+ . ...++.+-+.+.|. ++| .|.+.+....+|
T Consensus 164 ~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~---~~~--~t~vtY~~~~dP 209 (240)
T cd08913 164 ALRSVTLPTHPPTPEYTRGETLCSGFCIWEE---SDQ--LTKVSYYNQATP 209 (240)
T ss_pred EEEEeecCCCCCCCCcEEeeecccEEEEEEC---CCC--cEEEEEEEEeCC
Confidence 33334322 2 23456678888887 444 488877665553
No 61
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=87.99 E-value=14 Score=30.60 Aligned_cols=137 Identities=8% Similarity=-0.031 Sum_probs=82.7
Q ss_pred ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEee--cCCC---CceeEEEEEEEecCCc
Q 047053 36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNII--SGPP---ATTSTERLEMLDDENH 110 (192)
Q Consensus 36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~--~G~p---~~~vkErL~~iD~~~~ 110 (192)
.+++ +.+|++++++|...+-|- .+.|-+.+.++.+++--+ .....+.+. .-.| ...+.-|.-..+..+.
T Consensus 53 ~~r~--~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld--~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 53 LWRT--TIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILD--SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEE--EEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecC--CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 3454 468899999999998765 678988888877765421 112222222 1112 2344444444444444
Q ss_pred eEEEEEEeCC---CCcc-----eeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053 111 ILSFRVLGGD---HRLQ-----NYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182 (192)
Q Consensus 111 ~~~Y~ileg~---~p~~-----~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ 182 (192)
.+...+.+.. .|.. .+.+..-++|. ++| .|.+......|| -|.......-..+.+....|.+|++.
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~---g~g--~t~vtyi~~~DP-gG~iP~W~~N~~g~~~~~~~~~~r~s 200 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPC---GSG--KSKLTYMCRIDL-RGHMPEWYTKSFGHLCAAEVVKIRDS 200 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEEC---CCC--cEEEEEEEEeCC-CCCCcHHHHhhHHHHHHHHHHHHHhh
Confidence 4433333221 2443 34555667787 444 488888888885 56666666666688888888888876
Q ss_pred HH
Q 047053 183 AM 184 (192)
Q Consensus 183 ae 184 (192)
+.
T Consensus 201 f~ 202 (204)
T cd08908 201 FS 202 (204)
T ss_pred cc
Confidence 54
No 62
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=87.50 E-value=12 Score=31.85 Aligned_cols=37 Identities=16% Similarity=0.396 Sum_probs=32.9
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG 77 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG 77 (192)
++..+++|++++.+++.|...-+.|-+.+.++++++-
T Consensus 82 ~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~q 118 (236)
T cd08914 82 VEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDW 118 (236)
T ss_pred EEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEE
Confidence 4458899999999999999999999999999988754
No 63
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=83.93 E-value=22 Score=29.00 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=78.0
Q ss_pred EEE-cCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC-----CceeEEEEEEEe-cCCceEEEE
Q 047053 43 QKI-NTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP-----ATTSTERLEMLD-DENHILSFR 115 (192)
Q Consensus 43 ~~I-~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p-----~~~vkErL~~iD-~~~~~~~Y~ 115 (192)
.++ ++|++.|.+++.|...-+.|-+.+.++++++-++..| .+.+...-..| ...+--|....| +....+...
T Consensus 56 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~-~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~ 134 (209)
T cd08870 56 GVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSG-TEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTK 134 (209)
T ss_pred EEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCC-cEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEe
Confidence 455 7799999999999888889999888877764432112 22222211222 234444444444 223323332
Q ss_pred EEeCC-------CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 116 VLGGD-------HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183 (192)
Q Consensus 116 ileg~-------~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a 183 (192)
.+..+ ..+..|.+.+.+.|.. .++| +|.+...+-.+|.-......+-.++....-..|++|++++
T Consensus 135 sv~~~~~P~~~~vRv~~~~~~~~i~p~~-~~~~--~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 135 GVPYPSVPRSGRKRVDDYESSLVIRAVK-GDGQ--GSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred CCcCCCCCCCCcEEEEEEEeEEEEEEec-CCCC--ceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33321 1356888889998861 1223 4777777777753334444444455555556667777665
No 64
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=83.08 E-value=22 Score=28.33 Aligned_cols=140 Identities=8% Similarity=-0.120 Sum_probs=80.2
Q ss_pred EEEEEcCChhh-HhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCC-C---CceeEEEEEEEe-cCCceEE
Q 047053 41 ITQKINTPLSF-VWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGP-P---ATTSTERLEMLD-DENHILS 113 (192)
Q Consensus 41 v~~~I~apa~~-VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~-p---~~~vkErL~~iD-~~~~~~~ 113 (192)
.+..|.+++++ +=.++.|....+.|-+.+.++++++- +.+ ..|..+....-. | ...+--|-...+ +....+.
T Consensus 49 ~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~ 127 (206)
T smart00234 49 AVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVV 127 (206)
T ss_pred EEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEE
Confidence 34677778887 44677888888999999888887654 221 345554443222 3 233333333233 2233333
Q ss_pred EEEEeCC-CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053 114 FRVLGGD-HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185 (192)
Q Consensus 114 Y~ileg~-~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~ 185 (192)
..-++.+ .| ...+.+-+.+.|. +++ .|.+.|....++--......+..++.......+..|++.+..
T Consensus 128 ~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~---~~~--~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 128 DVSVTHPTSPPTSGYVRAENLPSGLLIEPL---GNG--PSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred EEECCCCCCCCCCCceEEEEeceEEEEEEC---CCC--CeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 3333322 12 2467778888887 444 399999888876433333444445555556666777666654
Q ss_pred c
Q 047053 186 S 186 (192)
Q Consensus 186 ~ 186 (192)
.
T Consensus 203 ~ 203 (206)
T smart00234 203 H 203 (206)
T ss_pred H
Confidence 3
No 65
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=82.65 E-value=25 Score=28.78 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=76.2
Q ss_pred EEEEc-CChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---Ccee-EEEEEEEecCCceEEE--
Q 047053 42 TQKIN-TPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTS-TERLEMLDDENHILSF-- 114 (192)
Q Consensus 42 ~~~I~-apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~v-kErL~~iD~~~~~~~Y-- 114 (192)
..++. ++++.+.+++.|...-..|-+.+.++.-...++ --|-.+.++--.| ...+ .-+...+|.+...+..
T Consensus 54 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~ 131 (207)
T cd08910 54 FGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVIL 131 (207)
T ss_pred EEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEE
Confidence 35666 799999999999888888988766642222222 1233343432222 2233 2223345544432211
Q ss_pred -EEEeCC--------CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 115 -RVLGGD--------HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 115 -~ileg~--------~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
..++-+ ..+..|.+.+.+.|. +++ +|.+.+.+..+|--..+.-.+-.+....+-.-|++|++++.
T Consensus 132 ~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~---~~~--~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 132 ARSTSLPQLPEKPGVIRVKQYKQSLAIESD---GKK--GSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred ecCCCCCCCCCCCCCEEEEEEEEEEEEEeC---CCC--ceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 222221 145678888888887 333 48888888777532233333444455556666777777653
No 66
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=79.12 E-value=32 Score=27.79 Aligned_cols=138 Identities=6% Similarity=-0.093 Sum_probs=72.8
Q ss_pred EEEEEEcCChhhHhhhhcC--CCCCCccCcccceeEeecCCCCCCeEEEEEeec-C------CCCcee-EEEEEEEecCC
Q 047053 40 LITQKINTPLSFVWPFVRD--FTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS-G------PPATTS-TERLEMLDDEN 109 (192)
Q Consensus 40 ~v~~~I~apa~~VW~~v~d--f~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~-G------~p~~~v-kErL~~iD~~~ 109 (192)
-.+..|++++++|.+++.| ...-..|-+.+..+++++.-+ .....+.+.. . .+...+ .+....+++..
T Consensus 49 k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id--~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~ 126 (206)
T cd08867 49 RAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKIS--EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQ 126 (206)
T ss_pred EEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeC--CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCe
Confidence 3457889999999999998 666789999999998876622 1122222221 1 112222 22223333322
Q ss_pred ceEEEEEEeCCC--Cccee------EEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047053 110 HILSFRVLGGDH--RLQNY------RSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLAD 181 (192)
Q Consensus 110 ~~~~Y~ileg~~--p~~~y------~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~ 181 (192)
..+...-++.+. +.++| .+-+-+.|.. ++.+ .|.+.|....|+.-..+...+-.++......-+..|++
T Consensus 127 ~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~-~~~~--~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~ 203 (206)
T cd08867 127 WSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLK-GSPD--KSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVK 203 (206)
T ss_pred EEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECC-CCCC--ceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHH
Confidence 333333343331 33333 3333455541 1122 49999999999643333333333444444445555554
Q ss_pred H
Q 047053 182 L 182 (192)
Q Consensus 182 ~ 182 (192)
+
T Consensus 204 ~ 204 (206)
T cd08867 204 G 204 (206)
T ss_pred h
Confidence 3
No 67
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=77.93 E-value=0.94 Score=32.90 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=38.6
Q ss_pred hHhhhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcC-CCCCCccCcccceeEeecCCCCCCeEEEEEee
Q 047053 21 ETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRD-FTNPDKYKNFIRSCTMKVGAGEVGSVRDVNII 90 (192)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~d-f~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~ 90 (192)
+..-|+.|+|.|++++|+. .|+.-.|.+|.+++. ++..+..- ...||- | |.++|.
T Consensus 36 ~~~~~~~~~~~~~~~kWYt----PIKGrlDALwaLlRr~YDrVSlMR-------Pq~gDk--g--rCinft 91 (95)
T PF05586_consen 36 RPPPKPPPTHKPPQRKWYT----PIKGRLDALWALLRRQYDRVSLMR-------PQPGDK--G--RCINFT 91 (95)
T ss_pred CCCCCCCCCCCCCCCcCcc----CccchHHHHHHHHHhccceeeeec-------CCCCCc--c--eEEEeE
Confidence 4555777999999999994 788899999999985 54443222 234652 3 666664
No 68
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=75.71 E-value=44 Score=27.57 Aligned_cols=138 Identities=11% Similarity=0.004 Sum_probs=76.2
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec---C--CCCceeEEEEE-EEecCCceEE
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS---G--PPATTSTERLE-MLDDENHILS 113 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~---G--~p~~~vkErL~-~iD~~~~~~~ 113 (192)
.+..|+++++++|+.+.+-..-..|=+.+..+++++- |+.. .|-+..... + .|...+--|-. .+++....+.
T Consensus 50 ~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~ 128 (204)
T cd08904 50 VEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVS 128 (204)
T ss_pred EEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCc-EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEE
Confidence 4578999999999999886667889888888887654 3211 121111111 1 23334433332 2344444445
Q ss_pred EEEEeCCC--CcceeE------EEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053 114 FRVLGGDH--RLQNYR------SVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182 (192)
Q Consensus 114 Y~ileg~~--p~~~y~------ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ 182 (192)
+..++.+- |-++|. +=+-+.|. .++...|.+.|-+..|+.--.+...+..++...+-.-+..|++.
T Consensus 129 ~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl---~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 129 SVSVEYPQCPPSSNYIRGYNHPCGYVCSPL---PENPAYSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDG 202 (204)
T ss_pred EEecccCCCCCCCCcEEEeeeccEEEEEEC---CCCCCceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 55566542 334433 44456676 22212599999999886533334444444444444444555543
No 69
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.35 E-value=36 Score=30.04 Aligned_cols=117 Identities=11% Similarity=0.160 Sum_probs=67.5
Q ss_pred eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecC-CceEEEE
Q 047053 37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDE-NHILSFR 115 (192)
Q Consensus 37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~-~~~~~Y~ 115 (192)
+....+.+++++++.++.++.+-..+.+|....+ ++..+.| |..-.+ +| .++-| ++++.+. .-.+.|+
T Consensus 173 ~di~l~~tfn~~~~eLy~~fld~~rv~~wt~S~a--~l~~~~~--g~f~lf---~G---nVtg~-~~~~e~~K~Iv~kWr 241 (301)
T KOG2936|consen 173 ADISLSATFNCRVDELYEIFLDPERVKAWTRSPA--ELEADPG--GKFSLF---DG---NVTGE-FLELEKNKKIVMKWR 241 (301)
T ss_pred ccceehhhcCCCHHHHHHHHhcHHHHHHhcCChh--hcccCCC--CceEEe---cc---cceee-eeeecCCCeEEEEEe
Confidence 7778888999999999999999888888876332 3332334 554444 45 33444 4444443 3345777
Q ss_pred EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 047053 116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVK 173 (192)
Q Consensus 116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~ 173 (192)
+-+=|- .+.|||.++..+ .+| .|.+.-... +.|.+. ++.++.-.+..|-
T Consensus 242 l~~Wp~---~~~atI~~~f~~--~~~--~t~l~~~~k-gVP~~e-ee~~~~~wq~yyf 290 (301)
T KOG2936|consen 242 LKSWPD---GHDATITLTFYE--SQG--ETKLQVKQK-GVPIGE-EENTRQGWQEYYF 290 (301)
T ss_pred cccCCC---CccceEEEEEec--CCC--ceEEEEEec-CCCcch-hHHHHhhHHHHhh
Confidence 765322 477888888873 233 355443222 133333 3445544444443
No 70
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=58.76 E-value=88 Score=24.63 Aligned_cols=139 Identities=11% Similarity=-0.090 Sum_probs=81.0
Q ss_pred EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCC--CC---ceeEEEEEEE-ecCCceEE
Q 047053 41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGP--PA---TTSTERLEML-DDENHILS 113 (192)
Q Consensus 41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~--p~---~~vkErL~~i-D~~~~~~~ 113 (192)
....|+++.+++...+.+-.. .|-+.+.++++++- +. -..|..+.+.... |. ..+-=|.... .+....+.
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~-~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~ 126 (206)
T PF01852_consen 50 AEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDE-DTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIV 126 (206)
T ss_dssp EEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEET-TEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEE
T ss_pred EEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCC-CCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEE
Confidence 557899999977777655333 89998888887654 22 1556665555433 42 2232222223 33334444
Q ss_pred EEEEeCC-C-C-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053 114 FRVLGGD-H-R-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM 184 (192)
Q Consensus 114 Y~ileg~-~-p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae 184 (192)
.+=++.+ . + ...|.+-+.+.|. ++| .|.|.+....++--......+..++....-..++.|.+.++
T Consensus 127 ~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~---~~~--~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~ 201 (206)
T PF01852_consen 127 SRSIDHPQYPPNSKGYVRAEILISGWVIRPL---GDG--RTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALK 201 (206)
T ss_dssp EEEEEBTTSSTT-TTSEEEEEESEEEEEEEE---TTC--EEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeccccccccccCcceeeeeeEeEEEEEc---cCC--CceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444433 2 2 1356677889998 455 39999988888643333344445555556666677777666
Q ss_pred hcc
Q 047053 185 ASF 187 (192)
Q Consensus 185 ~~~ 187 (192)
+..
T Consensus 202 ~~~ 204 (206)
T PF01852_consen 202 KQK 204 (206)
T ss_dssp HCC
T ss_pred Hhc
Confidence 543
No 71
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=37.17 E-value=2.4e+02 Score=23.33 Aligned_cols=138 Identities=14% Similarity=0.041 Sum_probs=80.2
Q ss_pred CceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CC--CCCeEEEEEeecCCC---CceeEEEEEEEecC
Q 047053 35 NTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AG--EVGSVRDVNIISGPP---ATTSTERLEMLDDE 108 (192)
Q Consensus 35 ~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG--~vG~VR~~~~~~G~p---~~~vkErL~~iD~~ 108 (192)
+.+++ +.+|++|++.|=..+-+ .-..|-..+.+..+++- ++ .++--+ +..-.| ...+.-|--..|..
T Consensus 52 k~~r~--~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~---~~~~~P~~~RD~v~~R~w~~~~~ 124 (205)
T cd08909 52 RLWKV--SVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYV---LNCMAPHPSRDFVVLRSWRTDLP 124 (205)
T ss_pred EEEEE--EEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEE---eecCCCCCCCEEEEEEEEEEeCC
Confidence 34554 46789999988777644 46678776666555432 42 222211 111112 24555554333432
Q ss_pred Cc--eEEEEEEeCC-CCcce------eEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 047053 109 NH--ILSFRVLGGD-HRLQN------YRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARL 179 (192)
Q Consensus 109 ~~--~~~Y~ileg~-~p~~~------y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L 179 (192)
.- .+.+.-++.+ .|... +.+-.-++|. +.| +|.+.+-...|+ .|....-....++.+....|.+|
T Consensus 125 ~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~---~~g--~trvt~i~~vDp-kG~~P~W~~n~~g~~~~~~~~~~ 198 (205)
T cd08909 125 KGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPC---GSG--KSRLTHICRVDL-KGHSPEWYNKGFGHLCAAEAARI 198 (205)
T ss_pred CCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEEC---CCC--CEEEEEEEEecC-CCCChHHHHHhHHHHHHHHHHHH
Confidence 22 2233333333 23333 3344556787 444 599999998995 67777777777899899999999
Q ss_pred HHHHHh
Q 047053 180 ADLAMA 185 (192)
Q Consensus 180 ~~~ae~ 185 (192)
++.+..
T Consensus 199 r~sf~~ 204 (205)
T cd08909 199 RNSFQP 204 (205)
T ss_pred HhhccC
Confidence 886643
No 72
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=23.88 E-value=1.8e+02 Score=18.10 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=9.1
Q ss_pred CeEEEEEeecC
Q 047053 82 GSVRDVNIISG 92 (192)
Q Consensus 82 G~VR~~~~~~G 92 (192)
|++|.+.|.++
T Consensus 1 GAvR~~kFsP~ 11 (43)
T PF10313_consen 1 GAVRCCKFSPE 11 (43)
T ss_pred CCeEEEEeCCC
Confidence 78999999743
Done!