BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047054
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 35/281 (12%)
Query: 30 ACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFF 89
ACE WGFF + NHG+ + + + + + E + K +AS
Sbjct: 27 ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFK------------ELVASKAL 74
Query: 90 ESIRVSGPE------FFASAKATVDVLFDEPPS---ELSETLKEYGNKLTELSKTIVKIV 140
E ++ + FF ++ E P E E +++ +L +L++ ++ ++
Sbjct: 75 EGVQAEVTDXDWESTFFLKHLPISNI--SEVPDLDEEYREVXRDFAKRLEKLAEELLDLL 132
Query: 141 LTSLGEHFQKKFYESEFKNCHGY---LRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQ 197
+LG +K + ++ F G ++ NY P + + ++GL HTD I +++Q
Sbjct: 133 CENLG--LEKGYLKNAFYGSKGPNFGTKVSNYPPCP--KPDLIKGLRAHTDAGGIILLFQ 188
Query: 198 D-QIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSL 256
D ++ GLQ+ K G+W+++ P +++VN+GD + NGK +S HRV+ ++ R SL
Sbjct: 189 DDKVSGLQLL-KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSL 247
Query: 257 AFFWCFEDEKRIFAPDEVV---GLGNLRRYKPFVCADYLKF 294
A F+ + I+ +V N + Y FV DY K
Sbjct: 248 ASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 34/281 (12%)
Query: 32 EEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLK-VGPSSSTKTYTP--------- 81
E +GF ++++ + + + F LP E+K + G + Y P
Sbjct: 31 ERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGA 90
Query: 82 -HFIASPFFESIRVSGPEFFASAKATVDVLFDEPP------SELSETLKEYGNKLTELSK 134
H+ F+ R P A +V E P S L +L G K+ E
Sbjct: 91 DHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIA 150
Query: 135 TIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSP-PEDVEKNEVEGLGMHTDMSCIT 193
T +K+ ++ F++ ++ + LR+++Y P P+D G H D++ IT
Sbjct: 151 TYLKL---------ERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRA---GAHGDINTIT 198
Query: 194 IVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVV----LKR 249
++ + GGL+V + G+W+ INP L++NIGD + N L S+ HRVV +R
Sbjct: 199 LLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERR 258
Query: 250 CVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCAD 290
V R S FF F + I V N RY + AD
Sbjct: 259 GVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITAD 299
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 13/275 (4%)
Query: 29 RACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPF 88
+A +WG ++ NHG+ L R+ + F L E K K +T +
Sbjct: 71 KASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLAN 130
Query: 89 FESIRVSGPEFF---ASAKATVDV-LFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSL 144
S ++ ++F A + D+ ++ + PS+ E EY L L+ + K + L
Sbjct: 131 NASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGL 190
Query: 145 GEHFQKKFYESEFKNCHGYL--RIINYSPPEDVEKNEVE-GLGMHTDMSCITIVYQDQIG 201
G + E E L INY P + E+ G+ HTD+S +T + + +
Sbjct: 191 G--LEPDRLEKEVGGLEELLLQMKINYYP--KCPQPELALGVEAHTDVSALTFILHNMVP 246
Query: 202 GLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWC 261
GLQ+ +GKW+ D+++++IGD + NGK +S HR ++ + R+S A F
Sbjct: 247 GLQLFY-EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 305
Query: 262 FEDEKRIFAP-DEVVGLGNLRRYKPFVCADYLKFR 295
+K + P E+V + + ++ P A +++ +
Sbjct: 306 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 13/275 (4%)
Query: 29 RACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPF 88
+A +WG ++ NHG+ L R+ + F L E K K +T +
Sbjct: 72 KASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLAN 131
Query: 89 FESIRVSGPEFF---ASAKATVDV-LFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSL 144
S ++ ++F A + D+ ++ + PS+ E EY L L+ + K + L
Sbjct: 132 NASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGL 191
Query: 145 GEHFQKKFYESEFKNCHGYL--RIINYSPPEDVEKNEVE-GLGMHTDMSCITIVYQDQIG 201
G + E E L INY P + E+ G+ HTD+S +T + + +
Sbjct: 192 G--LEPDRLEKEVGGLEELLLQMKINYYP--KCPQPELALGVEAHTDVSALTFILHNMVP 247
Query: 202 GLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWC 261
GLQ+ +GKW+ D+++++IGD + NGK +S HR ++ + R+S A F
Sbjct: 248 GLQLFY-EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306
Query: 262 FEDEKRIFAP-DEVVGLGNLRRYKPFVCADYLKFR 295
+K + P E+V + + ++ P A +++ +
Sbjct: 307 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 13/275 (4%)
Query: 29 RACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPF 88
+A +WG ++ NHG+ L R+ + F L E K K +T +
Sbjct: 72 KASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLAN 131
Query: 89 FESIRVSGPEFF---ASAKATVDV-LFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSL 144
S ++ ++F A + D+ ++ + PS+ E EY L L+ + K + L
Sbjct: 132 NASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGL 191
Query: 145 GEHFQKKFYESEFKNCHGYL--RIINYSPPEDVEKNEVE-GLGMHTDMSCITIVYQDQIG 201
G + E E L INY P + E+ G+ HTD+S +T + + +
Sbjct: 192 G--LEPDRLEKEVGGLEELLLQXKINYYP--KCPQPELALGVEAHTDVSALTFILHNXVP 247
Query: 202 GLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWC 261
GLQ+ +GKW+ D+++ +IGD + NGK +S HR ++ + R+S A F
Sbjct: 248 GLQLFY-EGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306
Query: 262 FEDEKRIFAP-DEVVGLGNLRRYKPFVCADYLKFR 295
+K + P E V + + ++ P A +++ +
Sbjct: 307 PPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHK 341
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 115 PSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKF---YESEFKNCH-GYLRIINYS 170
P L + Y K L+ +++ + T + + KF N H LRI++Y
Sbjct: 99 PDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYP 158
Query: 171 PPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLM 230
P E+ H D++ IT++ GLQV++K G W+++ +I+NIGD +
Sbjct: 159 PXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXL 218
Query: 231 HAWCNGKLRSSEHRVV----LKRCVNRLSLAFF 259
+G S+ HRV+ + +R+SL F
Sbjct: 219 QEASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 132 LSKTIVKIVLTSLGEHFQKKFYESEFK--NCHGYLRIINY---SP-PEDVEKNEVEGLGM 185
LS ++K +LG+ ++ F+ FK + + +I Y P PE K +G +
Sbjct: 152 LSSALLKGYALALGK--EENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKL 209
Query: 186 ----HTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSS 241
H D+S IT++YQ + LQV + G + +I + ++N G M N ++
Sbjct: 210 SFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYYKAP 268
Query: 242 EHRVVLKRCVN--RLSLAFFWCFEDEKRI--FAPDEVVGLGNLRRYKPFVCADYLK 293
HRV + VN R SL FF + I F P E G + +P DYL+
Sbjct: 269 IHRV---KWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDR---EPLSYGDYLQ 318
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 132 LSKTIVKIVLTSLGEHFQKKFYESEFK--NCHGYLRIINY---SP-PEDVEKNEVEGLGM 185
LS ++K +LG+ ++ F+ FK + + +I Y P PE K +G +
Sbjct: 152 LSSALLKGYALALGK--EENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKL 209
Query: 186 ----HTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSS 241
H D+S IT++YQ + LQV + G + +I + ++N G M N ++
Sbjct: 210 SFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYYKAP 268
Query: 242 EHRVVLKRCVN--RLSLAFFWCFEDEKRI--FAPDEVVGLGNLRRYKPFVCADYLK 293
HRV + VN R SL FF + I F P E G + +P DYL+
Sbjct: 269 IHRV---KWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDR---EPLSYGDYLQ 318
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 98 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 132
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 90 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 124
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGK 211
K EVE L +H D S T+ + + I L++RSK+G+
Sbjct: 75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1FHJ|A Chain A, Crystal Structure Of Aquomet Hemoglobin-I Of The Maned
Wolf (Chrysocyon Brachyurus) At 2.0 Resolution.
pdb|1FHJ|C Chain C, Crystal Structure Of Aquomet Hemoglobin-I Of The Maned
Wolf (Chrysocyon Brachyurus) At 2.0 Resolution.
pdb|2B7H|A Chain A, Hemoglobin From Cerdocyon Thous, A Canidae From Brazil, At
2.2 Angstroms Resolution
pdb|2B7H|C Chain C, Hemoglobin From Cerdocyon Thous, A Canidae From Brazil, At
2.2 Angstroms Resolution
Length = 141
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 75 STKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKL 129
+TKTY PHF SP ++ G + A A T D+ P LS + KL
Sbjct: 38 TTKTYFPHFDLSPGSAQVKAHGKK-VADALTTAVAHLDDLPGALSALSDLHAYKL 91
>pdb|2QLS|A Chain A, Crystal Structure Of Hemoglobin From Dog (Canis
Familiaris) At 3.5 Angstrom Resolution
pdb|2QLS|C Chain C, Crystal Structure Of Hemoglobin From Dog (Canis
Familiaris) At 3.5 Angstrom Resolution
pdb|3GOU|A Chain A, Crystal Structure Of Dog (Canis Familiaris) Hemoglobin
pdb|3GOU|C Chain C, Crystal Structure Of Dog (Canis Familiaris) Hemoglobin
pdb|3PEL|A Chain A, Structure Of Greyhound Hemoglobin: Origin Of High Oxygen
Affinity
Length = 141
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 75 STKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKL 129
+TKTY PHF SP ++ G + A A T D+ P LS + KL
Sbjct: 38 TTKTYFPHFDLSPGSAQVKAHGKK-VADALTTAVAHLDDLPGALSALSDLHAYKL 91
>pdb|1HDA|A Chain A, A Novel Allosteric Mechanism In Haemoglobin. Structure Of
Bovine Deoxyhaemoglobin, Absence Of Specific Chloride-
Binding Sites And Origin Of The Chloride-Linked Bohr
Effect In Bovine And Human Haemoglobin
pdb|1HDA|C Chain C, A Novel Allosteric Mechanism In Haemoglobin. Structure Of
Bovine Deoxyhaemoglobin, Absence Of Specific Chloride-
Binding Sites And Origin Of The Chloride-Linked Bohr
Effect In Bovine And Human Haemoglobin
pdb|1G08|A Chain A, Carbonmonoxy Liganded Bovine Hemoglobin Ph 5.0
pdb|1G08|C Chain C, Carbonmonoxy Liganded Bovine Hemoglobin Ph 5.0
pdb|1G09|A Chain A, Carbonmonoxy Liganded Bovine Hemoglobin Ph 7.2
pdb|1G09|C Chain C, Carbonmonoxy Liganded Bovine Hemoglobin Ph 7.2
pdb|1G0A|A Chain A, Carbonmonoxy Liganded Bovine Hemoglobin Ph 8.5
pdb|1G0A|C Chain C, Carbonmonoxy Liganded Bovine Hemoglobin Ph 8.5
pdb|1FSX|A Chain A, The X-Ray Structure Determination Of Bovine Carbonmonoxy
Hb At 2.1 A Resolution And Its Relationship To The
Quaternary Structure Of Other Hb Crystal Forms
pdb|1FSX|C Chain C, The X-Ray Structure Determination Of Bovine Carbonmonoxy
Hb At 2.1 A Resolution And Its Relationship To The
Quaternary Structure Of Other Hb Crystal Forms
pdb|3CIU|A Chain A, Site-Selective Glycosylation Of Cysteine-93 Beta On The
Surface Of Bovine Hemoglobin And Its Application As A
Novel Oxygen Therapeutic
pdb|3CIU|C Chain C, Site-Selective Glycosylation Of Cysteine-93 Beta On The
Surface Of Bovine Hemoglobin And Its Application As A
Novel Oxygen Therapeutic
pdb|2QSP|A Chain A, Bovine Hemoglobin At Ph 5.7
pdb|2QSP|C Chain C, Bovine Hemoglobin At Ph 5.7
pdb|2QSS|A Chain A, Bovine Hemoglobin At Ph 6.3
pdb|2QSS|C Chain C, Bovine Hemoglobin At Ph 6.3
pdb|3PI8|A Chain A, Site-Specific Glycosylation Of Hemoglobin Utilizing Oxime
Ligation Chemistry As A Viable Alternative To Pegylation
pdb|3PI8|C Chain C, Site-Specific Glycosylation Of Hemoglobin Utilizing Oxime
Ligation Chemistry As A Viable Alternative To Pegylation
pdb|3PI9|A Chain A, Site-Specific Glycosylation Of Hemoglobin Utilizing Oxime
Ligation Chemistry As A Viable Alternative To Pegylation
pdb|3PI9|C Chain C, Site-Specific Glycosylation Of Hemoglobin Utilizing Oxime
Ligation Chemistry As A Viable Alternative To Pegylation
pdb|3PIA|A Chain A, Site-Specific Glycosylation Of Hemoglobin Utilizing Oxime
Ligation Chemistry As A Viable Alternative To Pegylation
pdb|3PIA|C Chain C, Site-Specific Glycosylation Of Hemoglobin Utilizing Oxime
Ligation Chemistry As A Viable Alternative To Pegylation
Length = 141
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 75 STKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKL 129
+TKTY PHF S ++ G + A+ V+ L D+ P LSE + +KL
Sbjct: 38 TTKTYFPHFDLSHGSAQVKGHGAKVAAALTKAVEHL-DDLPGALSELSDLHAHKL 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,168,076
Number of Sequences: 62578
Number of extensions: 360552
Number of successful extensions: 764
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 33
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)