BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047061
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 30 FGWRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISV-VDGFKIIERERSPLLSA 88
F R++WALKL GI +++++EDL NKSPLL++ NPV+ KI V V G K I E + +L
Sbjct: 15 FSCRVIWALKLKGIPYEYVEEDLFNKSPLLLQYNPVHKKIPVLVHGGKPI-CESTIILEY 73
Query: 89 WMREFAEVPLIIKNRPPYEKLLAKF 113
+ E PL+ + P+E+ +A+F
Sbjct: 74 LDETWPENPLLPSD--PHERAVARF 96
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 69 ISVVDGFKIIERERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFHAVRQASLVAA 124
I V G K++E ++ P L AW F E P+I +N P +++ A F R+ L +A
Sbjct: 168 IEEVAGVKVLESQKFPRLHAWTENFKEAPIIKENLPDRDQMTAFFKRRREMILASA 223
>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7
Resolution
pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7
Resolution
Length = 219
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 30 FGWRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72
FG R+ AL GI++++ +EDL NKSPLL++ NPV+ KI V+
Sbjct: 15 FGMRVRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVL 57
>pdb|1OYJ|A Chain A, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|B Chain B, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|C Chain C, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|D Chain D, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione
Length = 231
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 27 VKLFGWRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72
V FG R A+ G++F++ +EDL NKS LL+R NPV+ KI V+
Sbjct: 14 VSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVL 59
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 33 RIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWM 90
R+ AL L G+ ++ ++EDL KS LL++ NPV+ KI V+ +G + E S ++ ++
Sbjct: 20 RVKLALALKGLSYEDVEEDLYKKSELLLKSNPVHKKIPVLIHNGAPVCE---SMIILQYI 76
Query: 91 RE-FAEVPLIIKNRPPYEKLLAKF 113
E FA + PYE+ +A+F
Sbjct: 77 DEVFASTGPSLLPADPYERAIARF 100
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 72 VDGFKIIERERSPLLSAWMREFAEVPLIIKNRPPYEKLL 110
+ G KI + ++PLL+AW+ F E+ P +LL
Sbjct: 178 LSGDKIFDAAKTPLLAAWVERFIELDAAKAALPDVGRLL 216
>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 240
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 89 WMREFAEVPLIIKNRPPYEKLLAKF 113
W+REF + L+ K RP Y+ L+ K+
Sbjct: 204 WVREFNKFDLVDKLRPYYQGLIDKY 228
>pdb|4IBP|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound Glutathione
pdb|4ID0|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound Glutathione Sulfinic Acid (Gso2h)
And Acetate
pdb|4ID0|B Chain B, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound Glutathione Sulfinic Acid (Gso2h)
And Acetate
pdb|4IJI|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|B Chain B, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|C Chain C, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|D Chain D, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|E Chain E, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|F Chain F, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|G Chain G, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
pdb|4IJI|H Chain H, Crystal Structure Of A Glutathione Transferase Family
Member From Psuedomonas Fluorescens Pf-5, Target
Efi-900011, With Bound S- (propanoic Acid)-glutathione
Length = 214
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 80 RERSPLLSAWMREFAEVPLIIKNRPPYE 107
R+ P L+AW E ++ P + RPP E
Sbjct: 180 RQDHPQLAAWYFEISQRPSXLATRPPVE 207
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 62 CNPVYNKISVVDGFKIIERERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFHAV 116
C P+ N ++ D IE L + +EV ++K P E+LL+K H V
Sbjct: 441 CAPLCNHYAINDRLDAIED-----LMVVPDKISEVVELLKKLPDLERLLSKIHNV 490
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 100 IKNRPPYEKLLAKFHAVRQASLVAALP 126
IK PP+E +L K +R+A AALP
Sbjct: 121 IKPLPPFESVLEKKRIIRRAIEAAALP 147
>pdb|2OBA|A Chain A, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|B Chain B, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|C Chain C, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|D Chain D, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|E Chain E, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|F Chain F, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
Length = 138
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 78 IERERSPLLSAWMREFAEVPLIIKNRPPYEKL 109
IE E P + W+R+FAE+ I K P YE+L
Sbjct: 58 IEGEVDPH-TGWIRDFAEIKAIFK--PIYEQL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,613,878
Number of Sequences: 62578
Number of extensions: 132899
Number of successful extensions: 286
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 14
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)