Query 047061
Match_columns 127
No_of_seqs 175 out of 1673
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 99.9 9.2E-22 2E-26 154.3 10.5 94 27-120 10-226 (231)
2 PRK09481 sspA stringent starva 99.5 2.7E-13 5.8E-18 103.0 9.1 45 27-72 11-62 (211)
3 TIGR00862 O-ClC intracellular 99.3 2.8E-11 6.2E-16 95.2 8.7 43 29-72 20-62 (236)
4 PLN02378 glutathione S-transfe 99.2 8.5E-11 1.9E-15 89.7 7.0 40 32-72 24-63 (213)
5 PRK10542 glutathionine S-trans 99.1 9.1E-11 2E-15 87.5 6.3 45 27-72 1-55 (201)
6 PRK10357 putative glutathione 99.1 3E-10 6.5E-15 85.0 6.6 45 27-72 1-52 (202)
7 cd03052 GST_N_GDAP1 GST_N fami 99.1 3.4E-10 7.4E-15 73.5 5.8 55 32-90 13-72 (73)
8 PLN02817 glutathione dehydroge 99.0 1E-09 2.2E-14 87.5 8.5 40 32-72 77-116 (265)
9 cd03061 GST_N_CLIC GST_N famil 99.0 2.8E-10 6E-15 78.0 4.6 60 29-92 23-84 (91)
10 cd03059 GST_N_SspA GST_N famil 99.0 1.1E-09 2.4E-14 69.6 6.3 62 27-92 1-71 (73)
11 cd03058 GST_N_Tau GST_N family 99.0 1.6E-09 3.5E-14 69.5 6.3 63 27-92 1-72 (74)
12 KOG0867 Glutathione S-transfer 98.9 1.8E-09 4E-14 83.9 6.3 46 26-72 2-57 (226)
13 PLN02395 glutathione S-transfe 98.9 2.7E-09 5.8E-14 80.5 6.8 46 26-72 2-56 (215)
14 cd03060 GST_N_Omega_like GST_N 98.9 2.4E-09 5.1E-14 68.4 5.1 40 32-72 13-52 (71)
15 PRK13972 GSH-dependent disulfi 98.9 2.8E-09 6.1E-14 80.8 5.2 45 27-72 2-55 (215)
16 cd03048 GST_N_Ure2p_like GST_N 98.8 7.5E-09 1.6E-13 67.5 5.2 62 27-92 2-77 (81)
17 cd03053 GST_N_Phi GST_N family 98.8 1.5E-08 3.2E-13 65.0 6.5 61 27-91 2-74 (76)
18 cd03044 GST_N_EF1Bgamma GST_N 98.8 1.4E-08 3E-13 65.6 6.3 57 32-92 13-74 (75)
19 TIGR01262 maiA maleylacetoacet 98.8 8.9E-09 1.9E-13 77.2 6.1 40 32-72 12-55 (210)
20 PRK15113 glutathione S-transfe 98.8 3.7E-08 8E-13 74.9 9.2 45 27-72 6-62 (214)
21 cd03045 GST_N_Delta_Epsilon GS 98.8 1.2E-08 2.5E-13 65.0 4.8 60 27-90 1-72 (74)
22 PF13417 GST_N_3: Glutathione 98.8 2.2E-08 4.9E-13 64.7 5.9 58 32-93 11-70 (75)
23 cd03046 GST_N_GTT1_like GST_N 98.8 2.9E-08 6.2E-13 63.4 6.2 57 32-92 12-73 (76)
24 cd03041 GST_N_2GST_N GST_N fam 98.8 1E-08 2.2E-13 66.7 4.1 62 27-92 2-75 (77)
25 cd03050 GST_N_Theta GST_N fami 98.8 3.4E-08 7.4E-13 63.6 6.5 62 27-92 1-74 (76)
26 PLN02473 glutathione S-transfe 98.7 1.7E-08 3.7E-13 76.2 5.3 45 27-72 3-57 (214)
27 cd03055 GST_N_Omega GST_N fami 98.7 3.3E-08 7.1E-13 66.2 5.9 61 26-90 18-88 (89)
28 cd03049 GST_N_3 GST_N family, 98.7 2.4E-08 5.2E-13 63.7 5.0 45 27-72 1-54 (73)
29 KOG0868 Glutathione S-transfer 98.7 1.8E-08 3.8E-13 77.3 4.9 45 27-72 6-61 (217)
30 cd03047 GST_N_2 GST_N family, 98.7 3.4E-08 7.3E-13 63.2 4.9 45 27-72 1-55 (73)
31 cd03056 GST_N_4 GST_N family, 98.7 3.9E-08 8.5E-13 62.1 5.0 45 27-72 1-55 (73)
32 cd03076 GST_N_Pi GST_N family, 98.7 1.8E-08 3.9E-13 64.9 3.1 62 26-91 1-71 (73)
33 cd03051 GST_N_GTT2_like GST_N 98.7 4E-08 8.7E-13 61.9 4.7 45 27-72 1-55 (74)
34 cd03039 GST_N_Sigma_like GST_N 98.7 2.7E-08 6E-13 63.4 3.9 56 32-91 13-71 (72)
35 cd03057 GST_N_Beta GST_N famil 98.7 4.3E-08 9.2E-13 63.2 4.8 62 27-92 1-74 (77)
36 COG0625 Gst Glutathione S-tran 98.6 5.4E-08 1.2E-12 73.5 4.7 40 32-72 13-54 (211)
37 PRK11752 putative S-transferas 98.6 7.5E-08 1.6E-12 76.2 5.5 48 23-72 42-104 (264)
38 cd03042 GST_N_Zeta GST_N famil 98.6 9.4E-08 2E-12 60.4 4.9 45 27-72 1-55 (73)
39 PF02798 GST_N: Glutathione S- 98.6 2.2E-07 4.7E-12 60.5 5.9 62 27-91 3-75 (76)
40 PTZ00057 glutathione s-transfe 98.5 2.1E-07 4.7E-12 70.4 5.0 43 27-72 5-62 (205)
41 cd03037 GST_N_GRX2 GST_N famil 98.4 3.8E-07 8.3E-12 57.9 4.4 44 27-72 1-51 (71)
42 cd03043 GST_N_1 GST_N family, 98.4 5E-07 1.1E-11 58.3 4.6 40 32-72 14-55 (73)
43 PF13409 GST_N_2: Glutathione 98.4 5E-07 1.1E-11 57.9 3.9 56 32-91 6-68 (70)
44 KOG4420 Uncharacterized conser 98.3 3.1E-07 6.8E-12 74.0 2.3 77 8-92 13-100 (325)
45 cd03040 GST_N_mPGES2 GST_N fam 98.3 8.5E-07 1.8E-11 57.0 3.4 43 27-72 2-51 (77)
46 PRK10387 glutaredoxin 2; Provi 98.2 8.9E-06 1.9E-10 60.9 8.3 44 27-72 1-51 (210)
47 cd03075 GST_N_Mu GST_N family, 98.2 5E-06 1.1E-10 54.9 5.7 57 32-92 13-80 (82)
48 cd03080 GST_N_Metaxin_like GST 98.1 6.5E-06 1.4E-10 53.0 5.6 50 32-92 21-72 (75)
49 cd03038 GST_N_etherase_LigE GS 98.1 8.1E-06 1.7E-10 53.5 5.0 61 27-92 15-81 (84)
50 cd00570 GST_N_family Glutathio 98.0 1.9E-05 4E-10 47.7 4.7 40 32-72 13-53 (71)
51 cd03077 GST_N_Alpha GST_N fami 97.9 2.7E-05 5.9E-10 50.9 5.6 54 32-92 14-74 (79)
52 cd03054 GST_N_Metaxin GST_N fa 97.9 2.9E-05 6.3E-10 49.3 5.3 50 32-92 20-71 (72)
53 cd03203 GST_C_Lambda GST_C fam 97.8 2.2E-05 4.7E-10 55.0 3.1 34 81-114 87-120 (120)
54 TIGR02182 GRXB Glutaredoxin, G 97.7 4.7E-05 1E-09 57.9 4.4 39 32-72 12-50 (209)
55 PRK10638 glutaredoxin 3; Provi 97.3 0.00028 6.1E-09 46.3 3.8 45 27-72 4-56 (83)
56 cd03184 GST_C_Omega GST_C fami 97.3 0.00022 4.9E-09 49.6 3.2 37 79-115 87-123 (124)
57 cd03185 GST_C_Tau GST_C family 97.2 0.00056 1.2E-08 47.0 4.0 37 79-115 89-125 (126)
58 cd03190 GST_C_ECM4_like GST_C 97.1 0.0003 6.4E-09 50.6 2.1 38 81-118 94-131 (142)
59 cd02976 NrdH NrdH-redoxin (Nrd 97.0 0.001 2.2E-08 40.9 3.6 45 27-72 2-54 (73)
60 KOG1422 Intracellular Cl- chan 97.0 0.0043 9.3E-08 48.7 7.4 42 30-72 23-64 (221)
61 PRK10329 glutaredoxin-like pro 96.9 0.0016 3.4E-08 43.2 4.1 46 26-72 2-54 (81)
62 TIGR02190 GlrX-dom Glutaredoxi 96.9 0.0018 3.9E-08 42.1 4.3 46 26-72 9-61 (79)
63 cd03027 GRX_DEP Glutaredoxin ( 96.8 0.0017 3.6E-08 41.4 3.6 45 27-72 3-55 (73)
64 cd03201 GST_C_DHAR GST_C famil 96.8 0.0012 2.6E-08 46.5 3.1 35 80-114 85-119 (121)
65 TIGR02194 GlrX_NrdH Glutaredox 96.4 0.0051 1.1E-07 39.1 3.6 45 27-72 1-52 (72)
66 TIGR02196 GlrX_YruB Glutaredox 96.3 0.0062 1.3E-07 37.3 3.4 45 27-72 2-54 (74)
67 cd03198 GST_C_CLIC GST_C famil 96.2 0.0054 1.2E-07 44.6 3.5 35 80-114 99-133 (134)
68 cd02066 GRX_family Glutaredoxi 96.1 0.0089 1.9E-07 36.3 3.7 45 27-72 2-54 (72)
69 cd03079 GST_N_Metaxin2 GST_N f 96.1 0.02 4.4E-07 37.6 5.4 50 32-91 21-72 (74)
70 TIGR02200 GlrX_actino Glutared 96.1 0.0097 2.1E-07 37.3 3.8 45 27-72 2-55 (77)
71 cd03029 GRX_hybridPRX5 Glutare 96.0 0.017 3.7E-07 36.4 4.6 60 27-90 3-71 (72)
72 PLN02907 glutamate-tRNA ligase 95.7 0.026 5.6E-07 51.2 5.9 24 26-49 2-31 (722)
73 cd03188 GST_C_Beta GST_C famil 94.6 0.025 5.4E-07 37.8 2.1 24 80-103 91-114 (114)
74 PF00462 Glutaredoxin: Glutare 94.3 0.032 7E-07 34.0 1.9 45 27-72 1-53 (60)
75 KOG1695 Glutathione S-transfer 94.2 0.099 2.2E-06 40.7 5.0 40 32-72 16-55 (206)
76 cd03209 GST_C_Mu GST_C family, 94.2 0.028 6E-07 38.8 1.7 26 81-106 85-110 (121)
77 TIGR02181 GRX_bact Glutaredoxi 94.0 0.071 1.5E-06 34.0 3.3 45 27-72 1-53 (79)
78 cd03418 GRX_GRXb_1_3_like Glut 94.0 0.092 2E-06 32.9 3.6 46 27-72 2-55 (75)
79 cd03210 GST_C_Pi GST_C family, 93.8 0.034 7.4E-07 38.7 1.6 26 80-105 87-112 (126)
80 cd03191 GST_C_Zeta GST_C famil 93.5 0.056 1.2E-06 36.9 2.1 26 80-105 94-119 (121)
81 cd03196 GST_C_5 GST_C family, 93.0 0.079 1.7E-06 36.5 2.3 23 80-102 92-114 (115)
82 COG0695 GrxC Glutaredoxin and 92.8 0.24 5.2E-06 32.5 4.3 45 27-72 3-57 (80)
83 cd03178 GST_C_Ure2p_like GST_C 92.7 0.084 1.8E-06 35.3 2.0 24 80-103 89-112 (113)
84 cd03186 GST_C_SspA GST_N famil 92.4 0.11 2.4E-06 34.6 2.3 22 81-102 85-106 (107)
85 PF00043 GST_C: Glutathione S- 92.4 0.1 2.2E-06 33.8 2.1 17 81-97 79-95 (95)
86 cd03187 GST_C_Phi GST_C family 92.3 0.1 2.2E-06 35.0 2.0 24 80-103 95-118 (118)
87 cd03207 GST_C_8 GST_C family, 92.2 0.11 2.4E-06 34.3 2.1 23 81-103 78-100 (103)
88 cd03177 GST_C_Delta_Epsilon GS 91.9 0.09 2E-06 35.8 1.5 24 80-103 87-110 (118)
89 PRK13972 GSH-dependent disulfi 91.5 0.11 2.5E-06 39.0 1.7 25 79-103 179-203 (215)
90 TIGR02189 GlrX-like_plant Glut 91.2 0.57 1.2E-05 31.8 4.9 46 26-72 9-65 (99)
91 cd03181 GST_C_EFB1gamma GST_C 90.8 0.16 3.4E-06 34.5 1.8 26 81-106 92-117 (123)
92 cd03180 GST_C_2 GST_C family, 90.5 0.17 3.6E-06 33.4 1.7 21 79-99 90-110 (110)
93 PRK12759 bifunctional gluaredo 90.5 1.4 3.1E-05 37.2 7.6 68 27-95 4-117 (410)
94 KOG3029 Glutathione S-transfer 90.1 0.4 8.6E-06 39.7 3.8 43 27-72 91-140 (370)
95 COG2999 GrxB Glutaredoxin 2 [P 89.7 0.54 1.2E-05 36.5 4.0 59 32-93 13-93 (215)
96 PLN02473 glutathione S-transfe 89.6 0.24 5.2E-06 37.0 2.0 23 81-103 187-209 (214)
97 cd03208 GST_C_Alpha GST_C fami 89.0 0.31 6.8E-06 34.7 2.2 24 81-104 91-114 (137)
98 cd03183 GST_C_Theta GST_C fami 88.9 0.3 6.5E-06 33.4 2.0 22 81-102 96-119 (126)
99 PRK11200 grxA glutaredoxin 1; 88.9 1.5 3.2E-05 28.4 5.2 64 26-92 2-81 (85)
100 cd03206 GST_C_7 GST_C family, 88.3 0.31 6.8E-06 32.2 1.7 21 79-99 80-100 (100)
101 cd03419 GRX_GRXh_1_2_like Glut 88.1 1.3 2.8E-05 27.8 4.5 45 27-72 2-57 (82)
102 cd03032 ArsC_Spx Arsenate Redu 88.0 0.71 1.5E-05 32.0 3.4 25 27-51 2-33 (115)
103 PRK10853 putative reductase; P 87.9 0.69 1.5E-05 32.7 3.3 24 27-50 2-32 (118)
104 cd03204 GST_C_GDAP1 GST_C fami 87.9 0.35 7.6E-06 33.9 1.8 19 81-99 93-111 (111)
105 PLN02395 glutathione S-transfe 87.5 0.33 7.2E-06 36.2 1.6 24 80-103 185-208 (215)
106 COG1393 ArsC Arsenate reductas 87.2 0.84 1.8E-05 32.4 3.4 25 26-50 2-33 (117)
107 cd03182 GST_C_GTT2_like GST_C 86.9 0.41 8.9E-06 32.1 1.6 19 81-99 99-117 (117)
108 PRK11752 putative S-transferas 86.1 0.53 1.1E-05 37.2 2.1 26 79-104 232-257 (264)
109 PRK01655 spxA transcriptional 85.5 1.1 2.4E-05 32.0 3.4 25 27-51 2-33 (131)
110 cd03033 ArsC_15kD Arsenate Red 85.3 1.1 2.4E-05 31.4 3.2 24 27-50 2-32 (113)
111 TIGR01616 nitro_assoc nitrogen 84.8 1.2 2.6E-05 31.9 3.3 24 27-50 3-33 (126)
112 PRK12559 transcriptional regul 84.3 2.3 5E-05 30.5 4.6 26 27-52 2-34 (131)
113 PHA03050 glutaredoxin; Provisi 84.1 3.5 7.7E-05 28.5 5.3 45 27-72 15-73 (108)
114 PRK13344 spxA transcriptional 83.6 2.8 6.1E-05 30.1 4.8 25 27-51 2-33 (132)
115 cd03036 ArsC_like Arsenate Red 83.4 1.3 2.8E-05 30.6 2.8 26 27-52 1-33 (111)
116 cd03194 GST_C_3 GST_C family, 83.3 0.81 1.8E-05 31.4 1.8 21 83-103 92-112 (114)
117 TIGR02180 GRX_euk Glutaredoxin 81.9 4.3 9.2E-05 25.4 4.7 40 32-72 13-58 (84)
118 cd02977 ArsC_family Arsenate R 81.6 3.3 7.2E-05 27.9 4.3 25 27-51 1-32 (105)
119 cd03035 ArsC_Yffb Arsenate Red 80.9 1.9 4.2E-05 29.6 3.0 25 27-51 1-32 (105)
120 PF05768 DUF836: Glutaredoxin- 80.6 7.2 0.00016 25.2 5.5 43 27-72 2-53 (81)
121 PRK10026 arsenate reductase; P 79.8 2.4 5.1E-05 31.1 3.3 25 26-50 3-34 (141)
122 PF04908 SH3BGR: SH3-binding, 79.6 2.5 5.5E-05 29.2 3.2 21 32-52 21-41 (99)
123 cd03189 GST_C_GTT1_like GST_C 78.9 1.4 3E-05 29.6 1.7 19 79-97 101-119 (119)
124 cd03030 GRX_SH3BGR Glutaredoxi 77.5 3.9 8.5E-05 27.7 3.6 41 32-72 20-64 (92)
125 cd03195 GST_C_4 GST_C family, 77.3 1.7 3.7E-05 29.7 1.8 20 84-103 92-111 (114)
126 TIGR01617 arsC_related transcr 76.3 3.3 7.2E-05 28.6 3.1 25 27-51 1-32 (117)
127 cd03078 GST_N_Metaxin1_like GS 75.4 13 0.00029 23.6 5.5 49 32-91 20-70 (73)
128 cd03034 ArsC_ArsC Arsenate Red 74.5 3.8 8.2E-05 28.3 3.0 24 27-50 1-31 (112)
129 TIGR00014 arsC arsenate reduct 73.2 4.2 9E-05 28.2 2.9 24 27-50 1-31 (114)
130 PF14497 GST_C_3: Glutathione 73.0 2.7 5.9E-05 27.6 1.9 15 81-95 85-99 (99)
131 cd03031 GRX_GRX_like Glutaredo 72.1 5.8 0.00013 29.2 3.6 41 32-72 20-64 (147)
132 PRK15113 glutathione S-transfe 70.4 2.2 4.8E-05 32.0 1.1 24 84-107 187-210 (214)
133 cd03028 GRX_PICOT_like Glutare 69.3 6 0.00013 26.0 2.9 40 32-72 27-67 (90)
134 cd03200 GST_C_JTV1 GST_C famil 65.6 4.8 0.0001 26.8 1.8 16 80-95 80-95 (96)
135 cd03202 GST_C_etherase_LigE GS 63.8 5 0.00011 27.8 1.7 16 80-95 108-123 (124)
136 COG0625 Gst Glutathione S-tran 63.4 5.4 0.00012 29.7 2.0 19 81-99 180-198 (211)
137 cd03197 GST_C_mPGES2 GST_C fam 62.4 4 8.8E-05 30.3 1.1 17 79-95 129-145 (149)
138 PRK10387 glutaredoxin 2; Provi 61.0 4.8 0.0001 29.7 1.3 18 82-99 190-207 (210)
139 TIGR00365 monothiol glutaredox 60.8 11 0.00024 25.3 3.0 40 32-72 31-71 (97)
140 TIGR02183 GRXA Glutaredoxin, G 59.3 19 0.00041 23.4 3.9 63 27-92 2-80 (86)
141 PF13410 GST_C_2: Glutathione 55.5 8.9 0.00019 23.2 1.7 13 80-92 57-69 (69)
142 cd03193 GST_C_Metaxin GST_C fa 55.4 6.7 0.00015 25.0 1.1 14 81-94 75-88 (88)
143 cd03205 GST_C_6 GST_C family, 52.4 7.9 0.00017 25.3 1.1 14 80-93 85-98 (98)
144 cd03179 GST_C_1 GST_C family, 51.4 7.9 0.00017 25.0 1.0 16 79-94 90-105 (105)
145 TIGR00412 redox_disulf_2 small 51.4 42 0.0009 21.2 4.4 34 34-72 20-53 (76)
146 cd03192 GST_C_Sigma_like GST_C 47.8 9.6 0.00021 24.8 1.0 14 80-93 91-104 (104)
147 cd00299 GST_C_family Glutathio 44.9 12 0.00025 23.5 1.0 14 80-93 87-100 (100)
148 PF03960 ArsC: ArsC family; I 40.4 30 0.00065 23.4 2.6 19 32-50 10-28 (110)
149 cd03212 GST_C_Metaxin1_3 GST_C 35.8 21 0.00047 25.4 1.3 16 80-95 119-134 (137)
150 cd03211 GST_C_Metaxin2 GST_C f 31.3 25 0.00055 24.5 1.1 14 80-93 112-125 (126)
151 PRK10824 glutaredoxin-4; Provi 29.3 67 0.0014 22.6 2.9 40 32-72 34-74 (115)
152 cd02973 TRX_GRX_like Thioredox 26.2 1.5E+02 0.0032 17.5 4.2 39 32-72 15-56 (67)
153 KOG4244 Failed axon connection 24.4 2.6E+02 0.0057 23.0 5.8 66 32-109 65-130 (281)
154 PF13192 Thioredoxin_3: Thiore 22.9 1.5E+02 0.0032 18.5 3.5 36 32-72 18-53 (76)
155 PF12091 DUF3567: Protein of u 20.5 1.7E+02 0.0037 19.8 3.4 46 73-118 27-76 (85)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.2e-22 Score=154.32 Aligned_cols=94 Identities=39% Similarity=0.637 Sum_probs=87.9
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc---------------------------
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--------------------------- 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--------------------------- 72 (127)
++||| +|++|+|++|||+||++++|+.+|++||+..||.|++||||
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~i 89 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPI 89 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCC
Confidence 99999 99999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 047061 73 -------------------------------------------------------------------------------- 72 (127)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (127)
T Consensus 90 LP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~ 169 (231)
T KOG0406|consen 90 LPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFE 169 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHH
Confidence
Q ss_pred ---------ccceecccccChHHHHHHHHhhcChhhhhcCCCHHHHHHHHHHHHHHh
Q 047061 73 ---------DGFKIIERERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFHAVRQAS 120 (127)
Q Consensus 73 ---------~g~~lld~eKfP~L~~W~erm~e~P~Vke~lP~~ekl~~~~k~~~~~~ 120 (127)
+|++.+++++||+|.+|++||.++|+|++++|+.+++++|++.+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 170 RWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred HHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 134456689999999999999999999999999999999999998864
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.47 E-value=2.7e-13 Score=102.98 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=43.4
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
|+||| +||+++|+|+||+||++.+|+.+++++|+++||. |+||||
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL 62 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTL 62 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEE
Confidence 89998 9999999999999999999998899999999999 599999
No 3
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.25 E-value=2.8e-11 Score=95.25 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=40.3
Q ss_pred EehHHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 29 LFGWRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 29 Ly~~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
.+.+||+++|.+|||+||++.+|+.+++++|+++||. ++||||
T Consensus 20 p~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL 62 (236)
T TIGR00862 20 PFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFL 62 (236)
T ss_pred HhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEE
Confidence 3449999999999999999999999999999999999 599999
No 4
>PLN02378 glutathione S-transferase DHAR1
Probab=99.16 E-value=8.5e-11 Score=89.72 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
+||+++|+++|++||++++|+.+++++|+++||. |+||+|
T Consensus 24 ~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL 63 (213)
T PLN02378 24 QRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVL 63 (213)
T ss_pred HHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEE
Confidence 9999999999999999999999999999999999 599999
No 5
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.14 E-value=9.1e-11 Score=87.50 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=40.1
Q ss_pred eeEeh------HHHHHHHHhhCCCceEEEccCCC----CChHHHHhCCCCcccccc
Q 047061 27 VKLFG------WRIVWALKLSGIQFDFIDEDLSN----KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~------~rv~l~l~ekGi~~e~~~vdl~~----k~~~~~~~nP~~~~vPvl 72 (127)
|+||| +||+++|+++||+||++.+|+.+ ++++|.++||. |+||||
T Consensus 1 m~l~~~~~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL 55 (201)
T PRK10542 1 MKLFYKPGACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPAL 55 (201)
T ss_pred CceeecccHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeE
Confidence 46777 89999999999999999999863 45899999999 599999
No 6
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.08 E-value=3e-10 Score=85.05 Aligned_cols=45 Identities=31% Similarity=0.501 Sum_probs=41.5
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
|+||| +||+++|+++||+||.+++++..+++++.++||+ ++||+|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L 52 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPAL 52 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeE
Confidence 47888 8999999999999999999998888899999999 599999
No 7
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.07 E-value=3.4e-10 Score=73.53 Aligned_cols=55 Identities=16% Similarity=0.357 Sum_probs=44.5
Q ss_pred HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc--ccceecccccChHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWM 90 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~ 90 (127)
+||+++|+|+|++||++.+|+. +++++|.++||. ++||+| .|..+. ....+..|+
T Consensus 13 ~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~---Es~aI~~yL 72 (73)
T cd03052 13 QKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIIC---DPTQIIDYL 72 (73)
T ss_pred HHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEE---cHHHHHHHh
Confidence 8999999999999999999985 468899999999 599999 444332 356666665
No 8
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.04 E-value=1e-09 Score=87.55 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
+||+++|+|+||+|+++.+|+.++++||+++||. ++||+|
T Consensus 77 ~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL 116 (265)
T PLN02817 77 QRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVV 116 (265)
T ss_pred HHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEE
Confidence 9999999999999999999999999999999999 599999
No 9
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.04 E-value=2.8e-10 Score=77.99 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=48.8
Q ss_pred EehHHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHHH
Q 047061 29 LFGWRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 29 Ly~~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
.|.||+||+|++|||+|+++++|+.++++||+++||. |+|||| .|..+.| --.+.++++.
T Consensus 23 pf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~e---S~~I~eYLde 84 (91)
T cd03061 23 PFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTD---NNKIEEFLEE 84 (91)
T ss_pred hhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecC---HHHHHHHHHH
Confidence 4669999999999999999999999999999999999 599999 4544332 3455555554
No 10
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.01 E-value=1.1e-09 Score=69.56 Aligned_cols=62 Identities=21% Similarity=0.390 Sum_probs=51.1
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
|+||+ +|++++|+++|++|+.+++|+.+++++|.++||. ++||+| +|..+ .....+.+|+++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l---~es~aI~~yL~~ 71 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVL---YESRIIMEYLDE 71 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEE---EcHHHHHHHHHh
Confidence 46776 9999999999999999999998889999999999 599999 44443 236777777754
No 11
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.98 E-value=1.6e-09 Score=69.51 Aligned_cols=63 Identities=43% Similarity=0.738 Sum_probs=50.3
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
|+||+ +|++++|+++||+|+.+.+|+..++++|.++||..++||+| +|..+ .....+.+|++.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l---~eS~aI~~yL~~ 72 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPI---CESLIIVEYIDE 72 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEe---ehHHHHHHHHHh
Confidence 46777 99999999999999999999988899999999964699999 34433 234666666653
No 12
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.8e-09 Score=83.88 Aligned_cols=46 Identities=30% Similarity=0.532 Sum_probs=42.7
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl 72 (127)
.++||| |+|.+++.++|++||++.+|+. +++|+|+++||+| +||+|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~-kVP~l 57 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLG-KVPAL 57 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCC-CCCeE
Confidence 378998 9999999999999999999886 5899999999996 99999
No 13
>PLN02395 glutathione S-transferase
Probab=98.93 E-value=2.7e-09 Score=80.48 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=42.4
Q ss_pred ceeEeh------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc
Q 047061 26 MVKLFG------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 26 ~~~Ly~------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl 72 (127)
.++||| +||+++|+|+||+||.+.+|+. +++++|+++||+ |+||+|
T Consensus 2 ~~~ly~~~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L 56 (215)
T PLN02395 2 VLKVYGPAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVI 56 (215)
T ss_pred eEEEEcCCcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEE
Confidence 489999 9999999999999999999986 578999999999 599999
No 14
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.91 E-value=2.4e-09 Score=68.43 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
+|++++|+++|++||.+++|+.+++++|.++||. ++||+|
T Consensus 13 ~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L 52 (71)
T cd03060 13 MRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVL 52 (71)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEE
Confidence 9999999999999999999998888999999999 599999
No 15
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=98.88 E-value=2.8e-09 Score=80.85 Aligned_cols=45 Identities=27% Similarity=0.495 Sum_probs=41.5
Q ss_pred eeEeh------HHHHHHHHhhCCCceEEEccCCC---CChHHHHhCCCCcccccc
Q 047061 27 VKLFG------WRIVWALKLSGIQFDFIDEDLSN---KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~------~rv~l~l~ekGi~~e~~~vdl~~---k~~~~~~~nP~~~~vPvl 72 (127)
|+||+ +||+++|+|+||+||++.+|+.+ ++++|.++||+ |+||||
T Consensus 2 ~~Ly~~~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L 55 (215)
T PRK13972 2 IDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAI 55 (215)
T ss_pred eEEEECCCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEE
Confidence 88998 99999999999999999999864 47899999999 599999
No 16
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.83 E-value=7.5e-09 Score=67.47 Aligned_cols=62 Identities=19% Similarity=0.483 Sum_probs=50.0
Q ss_pred eeEeh------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc--c---cceecccccChHHHHHHHH
Q 047061 27 VKLFG------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV--D---GFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 27 ~~Ly~------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl--~---g~~lld~eKfP~L~~W~er 92 (127)
++||+ +||+++|+++||+|+++.+++. +++++|.++||. ++||+| . |..+. ..-.+..|+++
T Consensus 2 ~~Ly~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~---eS~aI~~yL~~ 77 (81)
T cd03048 2 ITLYTHGTPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVF---ESGAILLYLAE 77 (81)
T ss_pred eEEEeCCCCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEE---cHHHHHHHHHH
Confidence 88998 9999999999999999999975 467999999999 599999 2 44442 34566666654
No 17
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.82 E-value=1.5e-08 Score=64.98 Aligned_cols=61 Identities=26% Similarity=0.580 Sum_probs=48.6
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc--ccceecccccChHHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMR 91 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~e 91 (127)
|+||+ +|++++|+++|++|+.+.+++. +++++|.++||. ++||+| .|..+ .....+.+|++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l---~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKL---FESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEE---EcHHHHHHHHh
Confidence 67887 9999999999999999999985 467899999999 599999 34433 23556666654
No 18
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.82 E-value=1.4e-08 Score=65.58 Aligned_cols=57 Identities=23% Similarity=0.461 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCceEEEccCC--CCChHHHHhCCCCccccccc---cceecccccChHHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLS--NKSPLLIRCNPVYNKISVVD---GFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~--~k~~~~~~~nP~~~~vPvl~---g~~lld~eKfP~L~~W~er 92 (127)
++++++|+++|++|+.+.+|+. +++++|.++||. ++||+|. |..+ .....+..|+.+
T Consensus 13 ~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l---~es~aI~~yL~~ 74 (75)
T cd03044 13 LKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCL---FESNAIAYYVAN 74 (75)
T ss_pred HHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEE---eeHHHHHHHHhh
Confidence 9999999999999999999986 578999999999 5999993 4433 235677777754
No 19
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=98.82 E-value=8.9e-09 Score=77.21 Aligned_cols=40 Identities=28% Similarity=0.615 Sum_probs=36.4
Q ss_pred HHHHHHHHhhCCCceEEEccCC----CCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLS----NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~----~k~~~~~~~nP~~~~vPvl 72 (127)
+||+++|+++||+|+.+.+++. .++++|.++||. ++||+|
T Consensus 12 ~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L 55 (210)
T TIGR01262 12 YRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTL 55 (210)
T ss_pred HHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEE
Confidence 9999999999999999999973 357899999999 599999
No 20
>PRK15113 glutathione S-transferase; Provisional
Probab=98.80 E-value=3.7e-08 Score=74.88 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=41.5
Q ss_pred eeEeh---------HHHHHHHHhhCCCceEEEccCCC---CChHHHHhCCCCcccccc
Q 047061 27 VKLFG---------WRIVWALKLSGIQFDFIDEDLSN---KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~---------~rv~l~l~ekGi~~e~~~vdl~~---k~~~~~~~nP~~~~vPvl 72 (127)
++||| +||+++|+|+||+||.+.+|+.+ ++++|+++||. |+||||
T Consensus 6 ~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L 62 (214)
T PRK15113 6 ITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTL 62 (214)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEE
Confidence 78888 89999999999999999999874 57999999999 599999
No 21
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.78 E-value=1.2e-08 Score=65.04 Aligned_cols=60 Identities=17% Similarity=0.422 Sum_probs=46.4
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC---CChHHHHhCCCCcccccc--ccceecccccChHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN---KSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWM 90 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~---k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~ 90 (127)
++||+ ++++++|+++|++|+.+.+|+.. +.++|.+.||.+ +||+| .|..+. ....+..|+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~---es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQH-TVPTLVDNGFVLW---ESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCC-CCCEEEECCEEEE---cHHHHHHHH
Confidence 46777 89999999999999999999863 569999999994 99999 343332 244555554
No 22
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.77 E-value=2.2e-08 Score=64.69 Aligned_cols=58 Identities=26% Similarity=0.477 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHHHh
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMREF 93 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~erm 93 (127)
+||+++|+++||+|+++.++...++++|.++||. ++|||| .|..+. ....+.+|+++-
T Consensus 11 ~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~---dS~~I~~yL~~~ 70 (75)
T PF13417_consen 11 QKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLT---DSAAIIEYLEER 70 (75)
T ss_dssp HHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEE---SHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEe---CHHHHHHHHHHH
Confidence 9999999999999999999998889999999999 499999 444432 367788888764
No 23
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.76 E-value=2.9e-08 Score=63.38 Aligned_cols=57 Identities=23% Similarity=0.541 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc--ccceecccccChHHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
+||+++|+++|++|+.+.+|+. +++++|.++||. ++||+| .|..+ .....+..|+++
T Consensus 12 ~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l---~es~aI~~yL~~ 73 (76)
T cd03046 12 FRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVL---TESAAIILYLAE 73 (76)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEE---EcHHHHHHHHHH
Confidence 8999999999999999999985 578999999999 599999 34433 235677777654
No 24
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.76 E-value=1e-08 Score=66.74 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=48.0
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCccccccc----cceecccccChHHHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVVD----GFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl~----g~~lld~eKfP~L~~W~er 92 (127)
++||+ +||+++|+++||+|+.++++... ..++|.++||. ++||+|. |..+. ..-.|.+|++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~---es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMF---ESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEE---cHHHHHHHHHH
Confidence 88998 99999999999999999887543 46789999999 5999992 33332 24566666653
No 25
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.75 E-value=3.4e-08 Score=63.58 Aligned_cols=62 Identities=24% Similarity=0.405 Sum_probs=48.5
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC---CChHHHHhCCCCcccccc--ccceecccccChHHHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN---KSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~---k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
++||+ ++++++|+++|++|+.+.+|+.+ +.++|.++||. ++||+| .|..+ .....+..|+++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l---~eS~aI~~Yl~~ 74 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTL---AESVAILRYLAR 74 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEE---EcHHHHHHHHHh
Confidence 46777 89999999999999999999864 46899999999 599999 34333 235667777654
No 26
>PLN02473 glutathione S-transferase
Probab=98.73 E-value=1.7e-08 Score=76.17 Aligned_cols=45 Identities=29% Similarity=0.594 Sum_probs=41.9
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl 72 (127)
|+||| +||+++|+|+||+||.+.+|+. +++++|+++||+ |+||+|
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L 57 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAI 57 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeE
Confidence 79999 9999999999999999999986 478999999999 599999
No 27
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.72 E-value=3.3e-08 Score=66.16 Aligned_cols=61 Identities=20% Similarity=0.432 Sum_probs=50.1
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCccccccc---cceecccccChHHHHHH
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVVD---GFKIIERERSPLLSAWM 90 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl~---g~~lld~eKfP~L~~W~ 90 (127)
+++||+ +|++++|+++||+|+.+.+|+.+++++|.+.||. ++||+|. |..+ .....+.+|+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l---~eS~aI~~yL 88 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVV---YESLIICEYL 88 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEE---ECHHHHHHhh
Confidence 389998 9999999999999999999998888899999999 5999993 4443 2355666554
No 28
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.72 E-value=2.4e-08 Score=63.75 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=40.9
Q ss_pred eeEeh-------HHHHHHHHh--hCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKL--SGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~e--kGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
++||+ +|++++|++ +|++|+.+.+|..++.++|.+.||. ++||+|
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l 54 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPAL 54 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEE
Confidence 46776 999999999 8899999999988889999999999 599998
No 29
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-08 Score=77.31 Aligned_cols=45 Identities=27% Similarity=0.581 Sum_probs=40.4
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC----CChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN----KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~----k~~~~~~~nP~~~~vPvl 72 (127)
..||+ +|||++|+.|||+||++.+|+.+ .+.+|..+||. ++||+|
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L 61 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTL 61 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeE
Confidence 56888 99999999999999999999974 35699999999 599999
No 30
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.69 E-value=3.4e-08 Score=63.25 Aligned_cols=45 Identities=22% Similarity=0.585 Sum_probs=39.5
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl 72 (127)
++||+ +||+++|+++|++|+.+.+++. ++.++|.++||+ ++||+|
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L 55 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVL 55 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEE
Confidence 36776 8999999999999999999874 357899999999 599999
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.68 E-value=3.9e-08 Score=62.07 Aligned_cols=45 Identities=27% Similarity=0.702 Sum_probs=39.8
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl 72 (127)
++||+ +|++++|+++|++|+.+.+|+. +++++|.++||. ++||+|
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l 55 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVL 55 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEE
Confidence 36676 8999999999999999999975 368999999999 599999
No 32
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.67 E-value=1.8e-08 Score=64.95 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=48.5
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHH
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMR 91 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~e 91 (127)
+++||+ ++++++|+++|++||.+.+++.+..++|.++||. ++||+| +|..+ .....+..|+.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l---~es~aI~~yL~ 71 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTL---VQSNAILRHLG 71 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEE---EcHHHHHHHHh
Confidence 367777 8999999999999999999986666789999999 599999 34433 23456666653
No 33
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.67 E-value=4e-08 Score=61.92 Aligned_cols=45 Identities=29% Similarity=0.530 Sum_probs=39.9
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl 72 (127)
|+||+ +|++++|+++||+|+.+.+|+. .+.++|.++||. ++||+|
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l 55 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVL 55 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEE
Confidence 46777 9999999999999999999875 357899999999 599999
No 34
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.66 E-value=2.7e-08 Score=63.41 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc--ccceecccccChHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMR 91 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~e 91 (127)
++|+++|+++||+||.+.+|+.. ..++|.+.||+ ++||+| .|..+ .....+..|+.
T Consensus 13 ~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l---~es~aI~~yL~ 71 (72)
T cd03039 13 EPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKL---TQSNAILRYLA 71 (72)
T ss_pred HHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEE---EecHHHHHHhh
Confidence 89999999999999999999864 34558899999 599999 34443 23566666654
No 35
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.66 E-value=4.3e-08 Score=63.18 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=48.0
Q ss_pred eeEeh------HHHHHHHHhhCCCceEEEccCCC---CChHHHHhCCCCccccccc---cceecccccChHHHHHHHH
Q 047061 27 VKLFG------WRIVWALKLSGIQFDFIDEDLSN---KSPLLIRCNPVYNKISVVD---GFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 27 ~~Ly~------~rv~l~l~ekGi~~e~~~vdl~~---k~~~~~~~nP~~~~vPvl~---g~~lld~eKfP~L~~W~er 92 (127)
|+||+ ++|+++|+++||+|+.+.+|..+ ++++|.++||. ++||+|. |..+.+ .-.+.+|+++
T Consensus 1 ~~Ly~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~e---S~aI~~yL~~ 74 (77)
T cd03057 1 MKLYYSPGACSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTE---SAAILQYLAD 74 (77)
T ss_pred CEEEeCCCCchHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEc---HHHHHHHHHH
Confidence 35676 88999999999999999999864 68999999999 5999993 554422 4556666543
No 36
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.4e-08 Score=73.50 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCceEEEccCC--CCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLS--NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~--~k~~~~~~~nP~~~~vPvl 72 (127)
+||++++.|+||+||++.+|+. +++++|.++||. |+||||
T Consensus 13 ~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL 54 (211)
T COG0625 13 RKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPAL 54 (211)
T ss_pred HHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEE
Confidence 9999999999999999999998 589999999999 599999
No 37
>PRK11752 putative S-transferase; Provisional
Probab=98.60 E-value=7.5e-08 Score=76.20 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=42.9
Q ss_pred CccceeEeh------HHHHHHHHhh------CCCceEEEccCCC---CChHHHHhCCCCcccccc
Q 047061 23 VEVMVKLFG------WRIVWALKLS------GIQFDFIDEDLSN---KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 23 ~~~~~~Ly~------~rv~l~l~ek------Gi~~e~~~vdl~~---k~~~~~~~nP~~~~vPvl 72 (127)
+.+ |+||+ +||+|+|+|+ |++||++.+|+.. ++++|.++||. ++||+|
T Consensus 42 ~~~-~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~L 104 (264)
T PRK11752 42 KHP-LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPAL 104 (264)
T ss_pred CCC-eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEE
Confidence 445 99999 9999999997 9999999999863 57999999999 599999
No 38
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.59 E-value=9.4e-08 Score=60.41 Aligned_cols=45 Identities=24% Similarity=0.537 Sum_probs=40.0
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl 72 (127)
|+||+ ++++++|+++||+|+.+.+|+. ++.++|.++||. ++||+|
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l 55 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTL 55 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEE
Confidence 46776 9999999999999999999985 467899999999 599999
No 39
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=98.56 E-value=2.2e-07 Score=60.53 Aligned_cols=62 Identities=24% Similarity=0.528 Sum_probs=46.4
Q ss_pred eeEeh-----HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc--c-cceecccccChHHHHHHH
Q 047061 27 VKLFG-----WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV--D-GFKIIERERSPLLSAWMR 91 (127)
Q Consensus 27 ~~Ly~-----~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl--~-g~~lld~eKfP~L~~W~e 91 (127)
+++|+ .+++++|+++|++||.+.+|+. +++++|.+.||..++||+| . |+.+. +...+..++.
T Consensus 3 l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~---es~AI~~YLa 75 (76)
T PF02798_consen 3 LTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLT---ESNAILRYLA 75 (76)
T ss_dssp EEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEE---SHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEE---cHHHHHHHhC
Confidence 66776 9999999999999999999985 3569999999993399999 4 66553 3455555543
No 40
>PTZ00057 glutathione s-transferase; Provisional
Probab=98.48 E-value=2.1e-07 Score=70.35 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=35.1
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHH--------HhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLI--------RCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~--------~~nP~~~~vPvl 72 (127)
++||+ ++|+++|+++||+||.+.++. ++ ++|+ ..||+ ++||+|
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L 62 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPIL 62 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEE
Confidence 78888 899999999999999997653 22 3454 37999 599999
No 41
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.42 E-value=3.8e-07 Score=57.90 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=36.5
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
|+||+ +|||++|+++||+|+.+.++... ....++.||. ++||+|
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L 51 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPIL 51 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEE
Confidence 46777 99999999999999999888643 3455788999 599998
No 42
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.40 E-value=5e-07 Score=58.29 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCceEEEccCCC--CChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN--KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~--k~~~~~~~nP~~~~vPvl 72 (127)
+|++++|+++||+|+.+.+++.. +.++|.++||+ ++||+|
T Consensus 14 ~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L 55 (73)
T cd03043 14 LRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVL 55 (73)
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEE
Confidence 99999999999999999999864 57899999999 599999
No 43
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.36 E-value=5e-07 Score=57.90 Aligned_cols=56 Identities=25% Similarity=0.406 Sum_probs=41.9
Q ss_pred HHHHHHHHhhCCCceEEEccC----CCCChHHHHhCCCCccccccc---cceecccccChHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDL----SNKSPLLIRCNPVYNKISVVD---GFKIIERERSPLLSAWMR 91 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl----~~k~~~~~~~nP~~~~vPvl~---g~~lld~eKfP~L~~W~e 91 (127)
+||+++|+++||+|++..++. ..++++|.++||. ++||+|. |.- +. ..-.+..|++
T Consensus 6 ~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~v-i~--eS~~I~~yL~ 68 (70)
T PF13409_consen 6 HRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTV-IN--ESLAILEYLE 68 (70)
T ss_dssp HHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEE-EE--SHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCE-ee--CHHHHHHHHh
Confidence 899999999999999998854 3467899999999 5999992 332 22 3455555554
No 44
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.31 E-value=3.1e-07 Score=74.00 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=56.7
Q ss_pred hhhhhhhhhcccCCCCccceeEeh-------HHHHHHHHhhCCCceEEEccCC---CCChHHHHhCCCCcccccc-ccce
Q 047061 8 SFKQRNLAHNGRRSDVEVMVKLFG-------WRIVWALKLSGIQFDFIDEDLS---NKSPLLIRCNPVYNKISVV-DGFK 76 (127)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~---~k~~~~~~~nP~~~~vPvl-~g~~ 76 (127)
++-|++.++.-+.+ +.||+ +|||++++||||+++-..||+- +++|||+.+||- +.|||| .|-.
T Consensus 13 ~~~~~~ka~~~~e~-----~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~ 86 (325)
T KOG4420|consen 13 APEAASKAHWPRES-----LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDN 86 (325)
T ss_pred CchhhcCCCCchhc-----ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCe
Confidence 44555554443333 67777 9999999999999999999986 589999999999 599999 3443
Q ss_pred ecccccChHHHHHHHH
Q 047061 77 IIERERSPLLSAWMRE 92 (127)
Q Consensus 77 lld~eKfP~L~~W~er 92 (127)
+|. .+-.|..++++
T Consensus 87 II~--d~tqIIdYvEr 100 (325)
T KOG4420|consen 87 IIS--DYTQIIDYVER 100 (325)
T ss_pred ecc--cHHHHHHHHHH
Confidence 332 25556666665
No 45
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.27 E-value=8.5e-07 Score=57.03 Aligned_cols=43 Identities=14% Similarity=0.428 Sum_probs=36.7
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
++||+ +|++++|.++||+|+.+++|+..+++ +..||. ++||+|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~--~~~~~~-~~vP~l 51 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKE--IKWSSY-KKVPIL 51 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHH--HHHhCC-CccCEE
Confidence 67888 99999999999999999998765433 477999 599998
No 46
>PRK10387 glutaredoxin 2; Provisional
Probab=98.21 E-value=8.9e-06 Score=60.89 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=35.7
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
|+||+ +||+++|+++||+||+++++.... ...+..||.+ +||||
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~~~~~p~~-~VPvL 51 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE-ATPIRMIGQK-QVPIL 51 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch-hhHHHhcCCc-ccceE
Confidence 46777 999999999999999999876532 2236799984 99998
No 47
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=98.18 E-value=5e-06 Score=54.89 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCCceEEEccCCC----CChHHHHhC-----CCCcccccc--ccceecccccChHHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN----KSPLLIRCN-----PVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~----k~~~~~~~n-----P~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
++++++|+++||+||.+.+|+.. +.++|.+.+ |++ +||+| +|..+ .....+..|+.+
T Consensus 13 ~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g-~vP~L~~~g~~l---~ES~AIl~YLa~ 80 (82)
T cd03075 13 QPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFP-NLPYYIDGDVKL---TQSNAILRYIAR 80 (82)
T ss_pred HHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCC-CCCEEEECCEEE---eehHHHHHHHhh
Confidence 89999999999999999999864 235665332 994 99999 45433 346677776643
No 48
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.15 E-value=6.5e-06 Score=53.04 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
+||+++|+++|++|+.++++.. +.||. ++||+| .|..+ . ....+.+|+++
T Consensus 21 ~~v~~~L~~~gi~~~~~~~~~~-------~~~p~-g~vPvl~~~g~~l-~--eS~~I~~yL~~ 72 (75)
T cd03080 21 LKVETFLRMAGIPYENKFGGLA-------KRSPK-GKLPFIELNGEKI-A--DSELIIDHLEE 72 (75)
T ss_pred HHHHHHHHHCCCCcEEeecCcc-------cCCCC-CCCCEEEECCEEE-c--CHHHHHHHHHH
Confidence 8999999999999999988763 68899 599999 44433 2 34677777765
No 49
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.08 E-value=8.1e-06 Score=53.50 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=44.3
Q ss_pred eeEehHHHHHHHHhhCCCceEEEccCCCC---ChHHHHhCCCCcccccc--c-cceecccccChHHHHHHHH
Q 047061 27 VKLFGWRIVWALKLSGIQFDFIDEDLSNK---SPLLIRCNPVYNKISVV--D-GFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 27 ~~Ly~~rv~l~l~ekGi~~e~~~vdl~~k---~~~~~~~nP~~~~vPvl--~-g~~lld~eKfP~L~~W~er 92 (127)
...+.+||+++|.++||+|+.+.+++.++ .+++ ++||. ++||+| . |..+. ....+.+|+++
T Consensus 15 ~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~---eS~aI~~yL~~ 81 (84)
T cd03038 15 FSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIG---DSFAIAEYLEE 81 (84)
T ss_pred cCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEe---CHHHHHHHHHH
Confidence 34455999999999999999999997643 2345 88999 599999 3 44432 35566666553
No 50
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=97.95 E-value=1.9e-05 Score=47.73 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCCh-HHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSP-LLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~-~~~~~nP~~~~vPvl 72 (127)
++++++|+++||+|+.+.++...... ++...+|. +++|+|
T Consensus 13 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l 53 (71)
T cd00570 13 LRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVL 53 (71)
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEE
Confidence 99999999999999999998765433 58899999 499998
No 51
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.95 E-value=2.7e-05 Score=50.88 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=40.2
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhC-----CCCcccccc--ccceecccccChHHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCN-----PVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~n-----P~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
++++|+|+++|++||.+.+|.. ++|.+.+ |. ++||+| .|..+ .....+..|+.+
T Consensus 14 ~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l---~ES~AI~~YL~~ 74 (79)
T cd03077 14 ESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKL---VQTRAILNYIAG 74 (79)
T ss_pred HHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEE---eeHHHHHHHHHH
Confidence 7999999999999999998863 3444444 57 599999 45433 347788888765
No 52
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.92 E-value=2.9e-05 Score=49.32 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMRE 92 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~er 92 (127)
++++++|+++||+|+.++++... +||. ++||+| .|..+ ..+..+.+|+++
T Consensus 20 ~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l---~es~~I~~yL~~ 71 (72)
T cd03054 20 LKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKI---ADSEKIIEYLKK 71 (72)
T ss_pred HHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEE---cCHHHHHHHHhh
Confidence 99999999999999999998743 7899 599999 34333 235777777753
No 53
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=97.77 E-value=2.2e-05 Score=54.95 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=31.7
Q ss_pred ccChHHHHHHHHhhcChhhhhcCCCHHHHHHHHH
Q 047061 81 ERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFH 114 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~lP~~ekl~~~~k 114 (127)
++||+|.+|+++|.++|+|++..|+.++++++++
T Consensus 87 ~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~~ 120 (120)
T cd03203 87 EGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLAK 120 (120)
T ss_pred ccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhhC
Confidence 6899999999999999999999999999998763
No 54
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.71 E-value=4.7e-05 Score=57.92 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=32.1
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
+||+++|+++||+||.+.++... ....+++||.+ +||+|
T Consensus 12 ~kvr~~L~~~gl~~e~~~~~~~~-~~~~~~~np~g-~vP~l 50 (209)
T TIGR02182 12 VRARMIFGLKNIPVEKHVLLNDD-EETPIRMIGAK-QVPIL 50 (209)
T ss_pred HHHHHHHHHcCCCeEEEECCCCc-chhHHHhcCCC-CcceE
Confidence 99999999999999998765533 22347999995 99998
No 55
>PRK10638 glutaredoxin 3; Provisional
Probab=97.34 E-value=0.00028 Score=46.28 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=39.6
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
++||+ ++++.+|+++||+|+.+++|... ..+++...++. .+||++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEE
Confidence 78888 99999999999999999887653 45788999999 599998
No 56
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=97.31 E-value=0.00022 Score=49.64 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=34.1
Q ss_pred ccccChHHHHHHHHhhcChhhhhcCCCHHHHHHHHHH
Q 047061 79 ERERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFHA 115 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e~P~Vke~lP~~ekl~~~~k~ 115 (127)
+.+.||+|.+|+++|.++|.|+..+++.+.+.++++.
T Consensus 87 ~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 87 PLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred CcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 3578999999999999999999999999999999874
No 57
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=97.17 E-value=0.00056 Score=47.01 Aligned_cols=37 Identities=32% Similarity=0.593 Sum_probs=33.7
Q ss_pred ccccChHHHHHHHHhhcChhhhhcCCCHHHHHHHHHH
Q 047061 79 ERERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFHA 115 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e~P~Vke~lP~~ekl~~~~k~ 115 (127)
+.++||+|.+|++++.++|.+++.++..+.+.+|+++
T Consensus 89 ~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 89 DEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred CcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 4578999999999999999999999999999988764
No 58
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=97.11 E-value=0.0003 Score=50.60 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=34.7
Q ss_pred ccChHHHHHHHHhhcChhhhhcCCCHHHHHHHHHHHHH
Q 047061 81 ERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFHAVRQ 118 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~lP~~ekl~~~~k~~~~ 118 (127)
++||+|.+|+++|.++|.|++..+..+.+.+|++++++
T Consensus 94 ~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 94 RDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 58999999999999999999999998999999988754
No 59
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.99 E-value=0.001 Score=40.91 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=37.2
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
+++|+ ++++.+|+++|++|..+++|... ..++|.++||. +.||++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i 54 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVV 54 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEE
Confidence 67777 88999999999999998887642 34678889998 599998
No 60
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0043 Score=48.69 Aligned_cols=42 Identities=31% Similarity=0.495 Sum_probs=39.6
Q ss_pred ehHHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 30 FGWRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 30 y~~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
+++|+.+.|.++|++|.+..||+..+++||..+.|- +++|+|
T Consensus 23 f~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l 64 (221)
T KOG1422|consen 23 FCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVL 64 (221)
T ss_pred hHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeE
Confidence 339999999999999999999999999999999999 599999
No 61
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.90 E-value=0.0016 Score=43.16 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=34.3
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
.++||+ ++++-+|+++||+|+.++++-.....+.+..++. ..||++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv 54 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVV 54 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEE
Confidence 378898 8999999999999998887643222233345677 499998
No 62
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.90 E-value=0.0018 Score=42.14 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=37.4
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
.++||+ ++++.+|+++||+|+.++++-.....++...+.. .+||++
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i 61 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQV 61 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeE
Confidence 399999 9999999999999999887655444566667777 499988
No 63
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.82 E-value=0.0017 Score=41.40 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=37.2
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
++||+ ++++.+|+++||+|+.++++-.. ..+++.++++. .+||++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEE
Confidence 67888 99999999999999988776432 34678899998 499998
No 64
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=96.81 E-value=0.0012 Score=46.54 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=31.1
Q ss_pred cccChHHHHHHHHhhcChhhhhcCCCHHHHHHHHH
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFH 114 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~lP~~ekl~~~~k 114 (127)
.++||+|.+|+++|.++|+|+..++..+++.+.++
T Consensus 85 ~~~~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~~ 119 (121)
T cd03201 85 PESLTSVKSYMKALFSRESFVKTKAEKEDVIAGWA 119 (121)
T ss_pred cccchHHHHHHHHHHCCchhhhcCCCHHHHHHHhc
Confidence 47999999999999999999999999988876553
No 65
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.37 E-value=0.0051 Score=39.12 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=32.7
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
++||+ ++++-+|+++||+|+.++++-.....+.+..... ..||++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v 52 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVI 52 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEE
Confidence 46777 9999999999999999887643323333344565 489988
No 66
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.25 E-value=0.0062 Score=37.33 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=35.4
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
++||+ ++++.+|+++|++|+.++++-.. ..+++.+.++.. .||++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~-~vP~~ 54 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQR-GVPVI 54 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCC-cccEE
Confidence 78888 88899999999999887665432 235677888984 99988
No 67
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=96.22 E-value=0.0054 Score=44.61 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=30.8
Q ss_pred cccChHHHHHHHHhhcChhhhhcCCCHHHHHHHHH
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNRPPYEKLLAKFH 114 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~lP~~ekl~~~~k 114 (127)
.+.||+|.+|++++.++|++++..|..+.++.+++
T Consensus 99 ~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 99 PADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 37899999999999999999999999987776653
No 68
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.14 E-value=0.0089 Score=36.31 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=35.6
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
+++|+ ++++.+|+++|++|+.++++-.. ...++..+++. .++|++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~ 54 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQI 54 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEE
Confidence 67787 99999999999998877665432 34677778898 499988
No 69
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=96.10 E-value=0.02 Score=37.62 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMR 91 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~e 91 (127)
.|++++|++.|++||.+. ... .++ .+|. |+||+| .|-.+ ...+.+..|+.
T Consensus 21 ~kv~~~L~elglpye~~~--~~~--~~~--~~P~-GkVP~L~~dg~vI---~eS~aIl~yL~ 72 (74)
T cd03079 21 LAVQTFLKMCNLPFNVRC--RAN--AEF--MSPS-GKVPFIRVGNQIV---SEFGPIVQFVE 72 (74)
T ss_pred HHHHHHHHHcCCCcEEEe--cCC--ccc--cCCC-CcccEEEECCEEE---eCHHHHHHHHh
Confidence 899999999999999984 221 121 5676 699998 55433 24677777764
No 70
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.08 E-value=0.0097 Score=37.26 Aligned_cols=45 Identities=13% Similarity=0.379 Sum_probs=35.1
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhC-CCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCN-PVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~n-P~~~~vPvl 72 (127)
++||+ ++++-.|+++|++|+.++++-.. ....+.++| +.. .||++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~-~vP~i 55 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNM-TVPTV 55 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCc-eeCEE
Confidence 67888 89999999999999987765433 235666777 874 99988
No 71
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.98 E-value=0.017 Score=36.44 Aligned_cols=60 Identities=27% Similarity=0.227 Sum_probs=40.8
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWM 90 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~ 90 (127)
++||+ .+++-+|.++||+|+.++++-......+...... ..||++ .|..+ .-+..|.+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~i---gg~~~l~~~l 71 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELI---GGSDDLEKYF 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEE---eCHHHHHHHh
Confidence 78888 9999999999999998887654333345555566 489987 34332 1245555553
No 72
>PLN02907 glutamate-tRNA ligase
Probab=95.65 E-value=0.026 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceeEeh------HHHHHHHHhhCCCceEEE
Q 047061 26 MVKLFG------WRIVWALKLSGIQFDFID 49 (127)
Q Consensus 26 ~~~Ly~------~rv~l~l~ekGi~~e~~~ 49 (127)
.++||+ .++.++|+++|++|++++
T Consensus 2 ~~kLy~~~~S~~~~v~~~L~~lgv~~e~~~ 31 (722)
T PLN02907 2 EAKLSFPPDSPPLAVIAAAKVAGVPLTIDP 31 (722)
T ss_pred eEEEEECCCCChHHHHHHHHHcCCCcEEee
Confidence 368888 889999999999999975
No 73
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=94.61 E-value=0.025 Score=37.76 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.3
Q ss_pred cccChHHHHHHHHhhcChhhhhcC
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~l 103 (127)
.++||+|.+|+++|.++|.|++.+
T Consensus 91 ~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 91 LSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred hhhChHHHHHHHHHHhCHHhHhhC
Confidence 468999999999999999998753
No 74
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.27 E-value=0.032 Score=33.97 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=34.5
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC-CCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS-NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~-~k~~~~~~~nP~~~~vPvl 72 (127)
+++|+ .+++-.|+++|++|+.++++-. ...+++.+..-. ..+|++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v 53 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQV 53 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEE
Confidence 45677 8899999999999999998876 345566666555 388876
No 75
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.099 Score=40.69 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
.-+|++++..|++||-+.+...+.-+......|+ +++|+|
T Consensus 16 e~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l 55 (206)
T KOG1695|consen 16 EPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVL 55 (206)
T ss_pred HHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEE
Confidence 6789999999999998877654422222333799 599999
No 76
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=94.22 E-value=0.028 Score=38.81 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.1
Q ss_pred ccChHHHHHHHHhhcChhhhhcCCCH
Q 047061 81 ERSPLLSAWMREFAEVPLIIKNRPPY 106 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~lP~~ 106 (127)
++||+|.+|.+++.++|.|++.+...
T Consensus 85 ~~~P~l~~~~~rv~~~p~vk~~~~~~ 110 (121)
T cd03209 85 DAFPNLKDFLERFEALPKISAYMKSD 110 (121)
T ss_pred ccChHHHHHHHHHHHCHHHHHHHhcc
Confidence 58999999999999999999976544
No 77
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.05 E-value=0.071 Score=34.04 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=33.6
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
+++|+ .+++-+|+++||+|+.++++-.. .-.++.+.... ..||++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i 53 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQI 53 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEE
Confidence 35677 88999999999999999887432 23456666665 489987
No 78
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.95 E-value=0.092 Score=32.86 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=32.2
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCC-CCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLS-NKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~-~k~~~~~~~nP~~~~vPvl 72 (127)
++||+ .+++-+|+++||+|+.++++-. ....++.........||++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v 55 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQI 55 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEE
Confidence 67888 8999999999999998887643 1123444443331279988
No 79
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=93.83 E-value=0.034 Score=38.73 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.9
Q ss_pred cccChHHHHHHHHhhcChhhhhcCCC
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNRPP 105 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~lP~ 105 (127)
.++||+|.+|+++|.++|.|++.+..
T Consensus 87 ~~~~P~l~~~~~rv~~~p~v~~~~~~ 112 (126)
T cd03210 87 LDAFPLLKAFVERLSARPKLKAYLES 112 (126)
T ss_pred hhcChHHHHHHHHHHhCcHHHHHHhC
Confidence 36899999999999999999996654
No 80
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=93.45 E-value=0.056 Score=36.85 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.6
Q ss_pred cccChHHHHHHHHhhcChhhhhcCCC
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNRPP 105 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~lP~ 105 (127)
.+.||+|.+|++++.++|.+++.+|.
T Consensus 94 ~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 94 LSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred cccCcHHHHHHHHHHhChhHHHhCcC
Confidence 47899999999999999999998774
No 81
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=93.01 E-value=0.079 Score=36.54 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.0
Q ss_pred cccChHHHHHHHHhhcChhhhhc
Q 047061 80 RERSPLLSAWMREFAEVPLIIKN 102 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~ 102 (127)
.++||+|.+|++++.+.|++++.
T Consensus 92 ~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 92 QSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred cccCHHHHHHHHHHHcChHHHhh
Confidence 47899999999999999999874
No 82
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.24 Score=32.52 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=35.6
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCC--CChHHHHhC-CCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSN--KSPLLIRCN-PVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~--k~~~~~~~n-P~~~~vPvl 72 (127)
+++|+ .++.=+|.++|++|+.++++-.. ...+++... +. .+||++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I 57 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQI 57 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEE
Confidence 67787 88999999999999999887765 444555554 77 499988
No 83
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=92.65 E-value=0.084 Score=35.31 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.4
Q ss_pred cccChHHHHHHHHhhcChhhhhcC
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~l 103 (127)
.++||+|.+|.++|.+.|.+++++
T Consensus 89 ~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 89 LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred hhhchHHHHHHHHHhhCHHHHHhc
Confidence 468999999999999999999854
No 84
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=92.38 E-value=0.11 Score=34.61 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=20.1
Q ss_pred ccChHHHHHHHHhhcChhhhhc
Q 047061 81 ERSPLLSAWMREFAEVPLIIKN 102 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~ 102 (127)
+.+|+|.+|+++|.++|+++..
T Consensus 85 ~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 85 KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred ccchHHHHHHHHHHCCHHHHHh
Confidence 4899999999999999999864
No 85
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=92.37 E-value=0.1 Score=33.77 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=16.1
Q ss_pred ccChHHHHHHHHhhcCh
Q 047061 81 ERSPLLSAWMREFAEVP 97 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P 97 (127)
++||+|.+|.++|.++|
T Consensus 79 ~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 79 EKFPKLKKWYERMFARP 95 (95)
T ss_dssp TTSHHHHHHHHHHHTSH
T ss_pred ccCHHHHHHHHHHHcCC
Confidence 79999999999999987
No 86
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=92.28 E-value=0.1 Score=35.04 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.9
Q ss_pred cccChHHHHHHHHhhcChhhhhcC
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~l 103 (127)
.+.||+|.+|++++.++|.+++.+
T Consensus 95 ~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 95 FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred hhcCchHHHHHHHHHhCHHHHhhC
Confidence 357999999999999999998753
No 87
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=92.22 E-value=0.11 Score=34.35 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=20.8
Q ss_pred ccChHHHHHHHHhhcChhhhhcC
Q 047061 81 ERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~l 103 (127)
++||+|.+|++++.+.|.+++.+
T Consensus 78 ~~~p~l~~w~~~~~~~p~~~~~~ 100 (103)
T cd03207 78 PERPAFDAYIARITDRPAFQRAA 100 (103)
T ss_pred CCChHHHHHHHHHHcCHHHHHHh
Confidence 68999999999999999998754
No 88
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=91.93 E-value=0.09 Score=35.81 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=21.2
Q ss_pred cccChHHHHHHHHhhcChhhhhcC
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~l 103 (127)
.+.||+|.+|+++|.+.|++++..
T Consensus 87 ~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 87 LSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred hhhCchHHHHHHHHHcccchHHHH
Confidence 357999999999999999999844
No 89
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=91.45 E-value=0.11 Score=39.03 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=22.1
Q ss_pred ccccChHHHHHHHHhhcChhhhhcC
Q 047061 79 ERERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e~P~Vke~l 103 (127)
+.++||+|.+|+++|.++|.|+..+
T Consensus 179 ~~~~~P~l~~w~~r~~~rp~~~~~~ 203 (215)
T PRK13972 179 DLAMYPAVKNWHERIRSRPATGQAL 203 (215)
T ss_pred cchhCHHHHHHHHHHHhCHHHHHHH
Confidence 3478999999999999999998854
No 90
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.21 E-value=0.57 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=34.8
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEccCCCCC----hHHHHhCCCCcccccc
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDEDLSNKS----PLLIRCNPVYNKISVV 72 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~----~~~~~~nP~~~~vPvl 72 (127)
++.+|+ +++.-+|+.+|++|+.+++|-.... ..+...... .+||++
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~V 65 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAV 65 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeE
Confidence 488999 8999999999999999988754321 234455566 499998
No 91
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=90.80 E-value=0.16 Score=34.46 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=23.2
Q ss_pred ccChHHHHHHHHhhcChhhhhcCCCH
Q 047061 81 ERSPLLSAWMREFAEVPLIIKNRPPY 106 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~lP~~ 106 (127)
+.||+|.+|++++.+.|.|++.+++.
T Consensus 92 ~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 92 AKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 57999999999999999999977654
No 92
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=90.53 E-value=0.17 Score=33.42 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.4
Q ss_pred ccccChHHHHHHHHhhcChhh
Q 047061 79 ERERSPLLSAWMREFAEVPLI 99 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e~P~V 99 (127)
+.++||+|.+|.++|.++|.+
T Consensus 90 ~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 90 ERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred ccccCchHHHHHHHHHhCCCC
Confidence 357899999999999999875
No 93
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=90.49 E-value=1.4 Score=37.25 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=48.0
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHH-h--------CCCCcccccc------------------
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIR-C--------NPVYNKISVV------------------ 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~-~--------nP~~~~vPvl------------------ 72 (127)
+++|+ .++.-+|.++||+|+.+++|-.....++.+ + ... .+||++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~~~g 82 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMARAG 82 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHHHhC
Confidence 78888 899999999999999888872221123322 2 244 489998
Q ss_pred ------cccee------cccccChHHHHHHHHhhc
Q 047061 73 ------DGFKI------IERERSPLLSAWMREFAE 95 (127)
Q Consensus 73 ------~g~~l------ld~eKfP~L~~W~erm~e 95 (127)
.|+.+ +.+-+||-+.+|.+.+.+
T Consensus 83 ~l~~~~~~~~~~~~~~~~~p~kY~~~~~ly~~~~~ 117 (410)
T PRK12759 83 EVIARVKGSSLTTFSKTYKPFNYPWAVDLTVKHEK 117 (410)
T ss_pred CHHHHhcCCcccccccccCCCccHHHHHHHHHHHH
Confidence 24444 346899999999987655
No 94
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=90.14 E-value=0.4 Score=39.69 Aligned_cols=43 Identities=14% Similarity=0.355 Sum_probs=35.6
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
+.||- .+||-.|.-.||+|++++||+..+.+ |+-+.+ +|||+|
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ssy-kKVPil 140 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSY-KKVPIL 140 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--cccccc-ccccEE
Confidence 77877 99999999999999999999986553 234455 799998
No 95
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.70 E-value=0.54 Score=36.49 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=42.1
Q ss_pred HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc---------------------ccceecccccChHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV---------------------DGFKIIERERSPLLSAW 89 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl---------------------~g~~lld~eKfP~L~~W 89 (127)
-|+|++...+||++|.+..+-.+ .+| +.+--. +.||+| .|-.+++.+.-|.+.+|
T Consensus 13 vrarmi~Gl~nipve~~vL~nDDe~Tp--~rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~~~~pai~~w 89 (215)
T COG2999 13 VRARMIFGLKNIPVELHVLLNDDEETP--IRMIGQ-KQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTGKVRPAIEAW 89 (215)
T ss_pred HHHHHHhhccCCChhhheeccCcccCh--hhhhcc-cccceEEccccccchhhhHHHHHHHHhcCchhhccCcCHHHHHH
Confidence 89999999999999988765543 222 233334 589999 13334566789999999
Q ss_pred HHHh
Q 047061 90 MREF 93 (127)
Q Consensus 90 ~erm 93 (127)
....
T Consensus 90 lrkv 93 (215)
T COG2999 90 LRKV 93 (215)
T ss_pred HHHh
Confidence 8764
No 96
>PLN02473 glutathione S-transferase
Probab=89.60 E-value=0.24 Score=37.03 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.0
Q ss_pred ccChHHHHHHHHhhcChhhhhcC
Q 047061 81 ERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~l 103 (127)
++||+|.+|.+++.++|.+++.+
T Consensus 187 ~~~P~l~~w~~~~~~~p~~~~~~ 209 (214)
T PLN02473 187 TSRENLNRWWNEISARPAWKKLM 209 (214)
T ss_pred hcCHHHHHHHHHHhcChhhHHHH
Confidence 68999999999999999998854
No 97
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=88.97 E-value=0.31 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.5
Q ss_pred ccChHHHHHHHHhhcChhhhhcCC
Q 047061 81 ERSPLLSAWMREFAEVPLIIKNRP 104 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~Vke~lP 104 (127)
+.||+|.+|++++.++|.|++.+.
T Consensus 91 ~~~P~l~~~~~rv~~~P~vk~~~~ 114 (137)
T cd03208 91 SDFPLLQAFKTRISNLPTIKKFLQ 114 (137)
T ss_pred ccChHHHHHHHHHHcCHHHHHHHh
Confidence 589999999999999999998543
No 98
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=88.93 E-value=0.3 Score=33.43 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.0
Q ss_pred ccChHHHHHHHHhhc--Chhhhhc
Q 047061 81 ERSPLLSAWMREFAE--VPLIIKN 102 (127)
Q Consensus 81 eKfP~L~~W~erm~e--~P~Vke~ 102 (127)
+.||+|.+|++++.+ .|++++.
T Consensus 96 ~~~p~l~~w~~~~~~~~~p~~~~~ 119 (126)
T cd03183 96 EGRPKLAAWRKRVKEAGNPLFDEA 119 (126)
T ss_pred ccCchHHHHHHHHHHhcchhHHHH
Confidence 689999999999999 8999873
No 99
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=88.86 E-value=1.5 Score=28.35 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=40.2
Q ss_pred ceeEeh-------HHHHHHHHh-----hCCCceEEEccCCC-CChHHHHhCCC-Ccccccc--ccceecccccChHHHHH
Q 047061 26 MVKLFG-------WRIVWALKL-----SGIQFDFIDEDLSN-KSPLLIRCNPV-YNKISVV--DGFKIIERERSPLLSAW 89 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~e-----kGi~~e~~~vdl~~-k~~~~~~~nP~-~~~vPvl--~g~~lld~eKfP~L~~W 89 (127)
.+++|+ .+++-+|++ .|++|+.++++-.. ..+++....-. ...||++ .|..+ ..|..|.+|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~i---gg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHI---GGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEE---cCHHHHHHH
Confidence 478888 888888998 79999888776432 12344443221 1389988 34332 356667666
Q ss_pred HHH
Q 047061 90 MRE 92 (127)
Q Consensus 90 ~er 92 (127)
.+.
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 653
No 100
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=88.31 E-value=0.31 Score=32.16 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=18.1
Q ss_pred ccccChHHHHHHHHhhcChhh
Q 047061 79 ERERSPLLSAWMREFAEVPLI 99 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e~P~V 99 (127)
+.++||+|.+|++++.+.|.+
T Consensus 80 ~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 80 DLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred ChhhCcHHHHHHHHHHhCcCC
Confidence 346899999999999999864
No 101
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=88.15 E-value=1.3 Score=27.81 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=33.8
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccCCCCCh----HHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDLSNKSP----LLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl~~k~~----~~~~~nP~~~~vPvl 72 (127)
+.+|+ .+++-+|+++|++|+.++++...... .+.+.... ..+|++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeE
Confidence 56776 89999999999999999988765432 34455555 489987
No 102
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=88.02 E-value=0.71 Score=32.01 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.3
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEcc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDED 51 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vd 51 (127)
+++|| ++++-.|+++||+|+.+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 88999 89999999999999988763
No 103
>PRK10853 putative reductase; Provisional
Probab=87.94 E-value=0.69 Score=32.67 Aligned_cols=24 Identities=33% Similarity=0.525 Sum_probs=21.4
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~v 50 (127)
++||| ++++-.|++.|++|+++++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 89999 8999999999999998764
No 104
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=87.88 E-value=0.35 Score=33.92 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=17.3
Q ss_pred ccChHHHHHHHHhhcChhh
Q 047061 81 ERSPLLSAWMREFAEVPLI 99 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~V 99 (127)
++||+|.+|++++.+.|++
T Consensus 93 ~~~P~l~~w~~rv~aRpsf 111 (111)
T cd03204 93 GKRPNLEAYFERVLQRESF 111 (111)
T ss_pred ccChHHHHHHHHHHcCCCC
Confidence 5899999999999999875
No 105
>PLN02395 glutathione S-transferase
Probab=87.48 E-value=0.33 Score=36.20 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.2
Q ss_pred cccChHHHHHHHHhhcChhhhhcC
Q 047061 80 RERSPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e~P~Vke~l 103 (127)
.+.||+|.+|++++.++|.+++.+
T Consensus 185 ~~~~p~L~~w~~~~~~rp~~k~~~ 208 (215)
T PLN02395 185 IKDRKHVSAWWDDISSRPAWKEVL 208 (215)
T ss_pred hccCchHHHHHHHHHcChHHHHHH
Confidence 357999999999999999999854
No 106
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=87.20 E-value=0.84 Score=32.37 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.2
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEc
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~v 50 (127)
+++||| ++++-.|++.||+|+.+++
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 489999 9999999999999997754
No 107
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=86.88 E-value=0.41 Score=32.07 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.5
Q ss_pred ccChHHHHHHHHhhcChhh
Q 047061 81 ERSPLLSAWMREFAEVPLI 99 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~V 99 (127)
.+||+|.+|++++.+.|+|
T Consensus 99 ~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 99 EELTHLRAWYDRMAARPSA 117 (117)
T ss_pred cccHHHHHHHHHHHhccCC
Confidence 6899999999999999975
No 108
>PRK11752 putative S-transferase; Provisional
Probab=86.10 E-value=0.53 Score=37.16 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.8
Q ss_pred ccccChHHHHHHHHhhcChhhhhcCC
Q 047061 79 ERERSPLLSAWMREFAEVPLIIKNRP 104 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e~P~Vke~lP 104 (127)
+.+.||+|.+|+++|.++|.+++.+.
T Consensus 232 ~~~~~P~L~~w~~rv~~rPs~k~~~~ 257 (264)
T PRK11752 232 DVGSYKHVQRWAKEIAERPAVKRGRI 257 (264)
T ss_pred CcccCHHHHHHHHHHHhCHHHHHHHh
Confidence 34789999999999999999998654
No 109
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.51 E-value=1.1 Score=31.98 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=22.3
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEcc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDED 51 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vd 51 (127)
++||+ ++++-.|+++||+|+.+++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 89999 89999999999999988764
No 110
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=85.27 E-value=1.1 Score=31.41 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.4
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~v 50 (127)
++||| ++++-.|++.||+|+++++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 78999 8999999999999998865
No 111
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=84.75 E-value=1.2 Score=31.86 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.7
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~v 50 (127)
++||| ++++-.|+++||+|+++++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 78999 9999999999999998864
No 112
>PRK12559 transcriptional regulator Spx; Provisional
Probab=84.31 E-value=2.3 Score=30.50 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=22.6
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccC
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDL 52 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl 52 (127)
+++|+ ++++-.|+++||+|+.+++.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 88999 888889999999999887643
No 113
>PHA03050 glutaredoxin; Provisional
Probab=84.13 E-value=3.5 Score=28.53 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=35.1
Q ss_pred eeEeh-------HHHHHHHHhhCC---CceEEEccCCCC----ChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSGI---QFDFIDEDLSNK----SPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi---~~e~~~vdl~~k----~~~~~~~nP~~~~vPvl 72 (127)
+++|+ .+++-+|+++|| +|+.+++|-... ..++.++.-. .+||.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~I 73 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRI 73 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEE
Confidence 88898 999999999999 788888774322 3467777766 499988
No 114
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.65 E-value=2.8 Score=30.07 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=22.4
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEcc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDED 51 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vd 51 (127)
+++|| ++++-.|++.||+|+.+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 89999 88888999999999998765
No 115
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=83.35 E-value=1.3 Score=30.60 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.0
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEccC
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDEDL 52 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vdl 52 (127)
++||+ ++++-.|+++||+|+.+++.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 47888 899999999999999887654
No 116
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=83.29 E-value=0.81 Score=31.41 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.8
Q ss_pred ChHHHHHHHHhhcChhhhhcC
Q 047061 83 SPLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 83 fP~L~~W~erm~e~P~Vke~l 103 (127)
.|+|.+|++++.++|.|++.+
T Consensus 92 ~P~l~~~~~rv~~rPsv~~~~ 112 (114)
T cd03194 92 SPAAQAYVDALLAHPAMQEWI 112 (114)
T ss_pred CHHHHHHHHHHHCCHHHHHHH
Confidence 399999999999999998753
No 117
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=81.89 E-value=4.3 Score=25.37 Aligned_cols=40 Identities=8% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCC--ceEEEccCCCCCh----HHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQ--FDFIDEDLSNKSP----LLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~--~e~~~vdl~~k~~----~~~~~nP~~~~vPvl 72 (127)
++++-+|+++|++ |+++++|.....+ .+...... ..||++
T Consensus 13 ~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v 58 (84)
T TIGR02180 13 KKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNI 58 (84)
T ss_pred HHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeE
Confidence 8888899999999 8888888764333 24455555 379987
No 118
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=81.62 E-value=3.3 Score=27.89 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=21.5
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEcc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDED 51 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vd 51 (127)
+++|+ ++++-.|+++||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 46788 89999999999999988775
No 119
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=80.90 E-value=1.9 Score=29.63 Aligned_cols=25 Identities=24% Similarity=0.443 Sum_probs=21.3
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEcc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDED 51 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vd 51 (127)
+++|| ++++-.|++.||+|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 46888 88999999999999988764
No 120
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=80.63 E-value=7.2 Score=25.18 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=27.0
Q ss_pred eeEeh-------HHHHHHHHhhC--CCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 27 VKLFG-------WRIVWALKLSG--IQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekG--i~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
++||| ..+.-+|+... .++++..+|+.+.+.++...+ . .||||
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~-~--~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG-Y--RIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC-T--STSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc-C--CCCEE
Confidence 67788 45555566443 456777788875455454444 3 69999
No 121
>PRK10026 arsenate reductase; Provisional
Probab=79.76 E-value=2.4 Score=31.13 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.0
Q ss_pred ceeEeh-------HHHHHHHHhhCCCceEEEc
Q 047061 26 MVKLFG-------WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 26 ~~~Ly~-------~rv~l~l~ekGi~~e~~~v 50 (127)
.++||| |+++-.|++.|++|+++++
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 389999 8999999999999998864
No 122
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=79.58 E-value=2.5 Score=29.21 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCCCceEEEccC
Q 047061 32 WRIVWALKLSGIQFDFIDEDL 52 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl 52 (127)
+++...|+.++|+|+.+.|.-
T Consensus 21 ~~v~~iL~a~kI~fe~vDIa~ 41 (99)
T PF04908_consen 21 QRVLMILEAKKIPFEEVDIAM 41 (99)
T ss_dssp HHHHHHHHHTT--EEEEETTT
T ss_pred HHHHHHHHHcCCCcEEEeCcC
Confidence 899999999999999776554
No 123
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=78.92 E-value=1.4 Score=29.61 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=16.5
Q ss_pred ccccChHHHHHHHHhhcCh
Q 047061 79 ERERSPLLSAWMREFAEVP 97 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e~P 97 (127)
+.+.||+|.+|++++.++|
T Consensus 101 ~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 101 LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred ccccCchHHHHHHHHhcCC
Confidence 3478999999999999876
No 124
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=77.48 E-value=3.9 Score=27.68 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCC---Ccccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPV---YNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~---~~~vPvl 72 (127)
++|+..|+.+||+|+.+.|+... ...+..+..+- ..++|-+
T Consensus 20 ~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQI 64 (92)
T cd03030 20 QEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQI 64 (92)
T ss_pred HHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEE
Confidence 88899999999999988877542 23455555331 1378844
No 125
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=77.30 E-value=1.7 Score=29.65 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhcChhhhhcC
Q 047061 84 PLLSAWMREFAEVPLIIKNR 103 (127)
Q Consensus 84 P~L~~W~erm~e~P~Vke~l 103 (127)
|++.+|++||.++|+|+..+
T Consensus 92 p~l~ay~~r~~~rPa~~~~~ 111 (114)
T cd03195 92 ERLRDYARRQWQRPSVQAWL 111 (114)
T ss_pred HHHHHHHHHHHCCHHHHHHH
Confidence 99999999999999998744
No 126
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=76.28 E-value=3.3 Score=28.63 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=20.9
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEcc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDED 51 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~vd 51 (127)
++||+ ++++-.|++.||+|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 46788 89999999999999987763
No 127
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=75.35 E-value=13 Score=23.61 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc--ccceecccccChHHHHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV--DGFKIIERERSPLLSAWMR 91 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl--~g~~lld~eKfP~L~~W~e 91 (127)
-++.+.|+..|++|+++..+- + ...|. |++|+| .|..+ ..+..+.++++
T Consensus 20 lk~~~~Lr~~~~~~~v~~~~n----~---~~sp~-gkLP~l~~~~~~i---~d~~~Ii~~L~ 70 (73)
T cd03078 20 LAVLAYLKFAGAPLKVVPSNN----P---WRSPT-GKLPALLTSGTKI---SGPEKIIEYLR 70 (73)
T ss_pred HHHHHHHHcCCCCEEEEecCC----C---CCCCC-CccCEEEECCEEe---cChHHHHHHHH
Confidence 788899999999999875321 1 24576 599988 44433 23566666654
No 128
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=74.47 E-value=3.8 Score=28.33 Aligned_cols=24 Identities=13% Similarity=0.327 Sum_probs=20.2
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~v 50 (127)
++||| ++++-.|++.|++|+.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 46888 8888889999999997754
No 129
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=73.24 E-value=4.2 Score=28.23 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred eeEeh-------HHHHHHHHhhCCCceEEEc
Q 047061 27 VKLFG-------WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi~~e~~~v 50 (127)
++||| ++++-.|++.|++|+.+++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKY 31 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 46888 8899999999999997764
No 130
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=73.03 E-value=2.7 Score=27.60 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=13.6
Q ss_pred ccChHHHHHHHHhhc
Q 047061 81 ERSPLLSAWMREFAE 95 (127)
Q Consensus 81 eKfP~L~~W~erm~e 95 (127)
.+||+|.+|++||.+
T Consensus 85 ~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 85 KDYPNLVRWYERIEE 99 (99)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHhhcC
Confidence 699999999999975
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=72.10 E-value=5.8 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.000 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCC---Ccccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPV---YNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~---~~~vPvl 72 (127)
++++-+|+.+||+|+.++++... .-+++.++... ..+||.+
T Consensus 20 ~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV 64 (147)
T cd03031 20 NNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRV 64 (147)
T ss_pred HHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE
Confidence 89999999999999888776532 23344444222 2378987
No 132
>PRK15113 glutathione S-transferase; Provisional
Probab=70.37 E-value=2.2 Score=32.04 Aligned_cols=24 Identities=4% Similarity=-0.173 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhcChhhhhcCCCHH
Q 047061 84 PLLSAWMREFAEVPLIIKNRPPYE 107 (127)
Q Consensus 84 P~L~~W~erm~e~P~Vke~lP~~e 107 (127)
|+|.+|.+++.+.|.|++.+-..+
T Consensus 187 p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 187 ERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhh
Confidence 999999999999999998654433
No 133
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=69.32 E-value=6 Score=26.02 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
.+++-+|+++|++|+.++++-.. ...++.+..-. .+||++
T Consensus 27 ~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~v 67 (90)
T cd03028 27 RKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQL 67 (90)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEE
Confidence 78999999999999999875331 12345566665 489987
No 134
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=65.59 E-value=4.8 Score=26.85 Aligned_cols=16 Identities=6% Similarity=0.383 Sum_probs=14.0
Q ss_pred cccChHHHHHHHHhhc
Q 047061 80 RERSPLLSAWMREFAE 95 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e 95 (127)
.+.||+|.+|+++|.+
T Consensus 80 ~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 80 SAAPANVQRWLKSCEN 95 (96)
T ss_pred cccChHHHHHHHHHHh
Confidence 4689999999999975
No 135
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.84 E-value=5 Score=27.83 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=14.0
Q ss_pred cccChHHHHHHHHhhc
Q 047061 80 RERSPLLSAWMREFAE 95 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e 95 (127)
.+.||+|.+|++||.+
T Consensus 108 ~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 108 LEEDDPVYDWFERCLD 123 (124)
T ss_pred cccCChHHHHHHHHhc
Confidence 3689999999999976
No 136
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.42 E-value=5.4 Score=29.67 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=17.4
Q ss_pred ccChHHHHHHHHhhcChhh
Q 047061 81 ERSPLLSAWMREFAEVPLI 99 (127)
Q Consensus 81 eKfP~L~~W~erm~e~P~V 99 (127)
+.||.|.+|++++.+.|..
T Consensus 180 ~~~p~l~~w~~r~~~rp~~ 198 (211)
T COG0625 180 ADYPALKAWYERVLARPAF 198 (211)
T ss_pred ccChHHHHHHHHHHcCCch
Confidence 5799999999999999994
No 137
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=62.40 E-value=4 Score=30.28 Aligned_cols=17 Identities=6% Similarity=0.335 Sum_probs=15.5
Q ss_pred ccccChHHHHHHHHhhc
Q 047061 79 ERERSPLLSAWMREFAE 95 (127)
Q Consensus 79 d~eKfP~L~~W~erm~e 95 (127)
|..+||+|.+|++||.+
T Consensus 129 Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 129 DMVEETKIGEWYERMDA 145 (149)
T ss_pred chhhCcCHHHHHHHHHH
Confidence 66799999999999986
No 138
>PRK10387 glutaredoxin 2; Provisional
Probab=60.96 E-value=4.8 Score=29.71 Aligned_cols=18 Identities=6% Similarity=0.254 Sum_probs=16.4
Q ss_pred cChHHHHHHHHhhcChhh
Q 047061 82 RSPLLSAWMREFAEVPLI 99 (127)
Q Consensus 82 KfP~L~~W~erm~e~P~V 99 (127)
.+|+|.+|++||.+.|.|
T Consensus 190 ~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 190 WPPRVADYRDNMSKKTQV 207 (210)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 479999999999999887
No 139
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=60.84 E-value=11 Score=25.34 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
.+++-+|.++||+|+.++++-.. -..++..+... .+||.+
T Consensus 31 ~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~v 71 (97)
T TIGR00365 31 ARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQL 71 (97)
T ss_pred HHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEE
Confidence 79999999999999977664211 11244455655 489987
No 140
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=59.34 E-value=19 Score=23.35 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=35.0
Q ss_pred eeEeh-------HHHHHHHHhhCC-----CceEEEccCCC-CChHHHHhCCC-Ccccccc--ccceecccccChHHHHHH
Q 047061 27 VKLFG-------WRIVWALKLSGI-----QFDFIDEDLSN-KSPLLIRCNPV-YNKISVV--DGFKIIERERSPLLSAWM 90 (127)
Q Consensus 27 ~~Ly~-------~rv~l~l~ekGi-----~~e~~~vdl~~-k~~~~~~~nP~-~~~vPvl--~g~~lld~eKfP~L~~W~ 90 (127)
+++|+ .+++-+|.++++ +|+.++++-.. ...++....-. ...||++ .|..+ .-+..|.+|.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~i---gG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHV---GGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEe---cCHHHHHHHH
Confidence 56777 888899999854 45555544221 12345544332 1389987 33332 2355566655
Q ss_pred HH
Q 047061 91 RE 92 (127)
Q Consensus 91 er 92 (127)
++
T Consensus 79 ~~ 80 (86)
T TIGR02183 79 KE 80 (86)
T ss_pred Hh
Confidence 44
No 141
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=55.51 E-value=8.9 Score=23.19 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=11.5
Q ss_pred cccChHHHHHHHH
Q 047061 80 RERSPLLSAWMRE 92 (127)
Q Consensus 80 ~eKfP~L~~W~er 92 (127)
.+.||+|.+|++|
T Consensus 57 ~~~~p~l~~w~~r 69 (69)
T PF13410_consen 57 LEAYPNLRAWYER 69 (69)
T ss_dssp HTTSHHHHHHHHH
T ss_pred cccCHHHHHHHhC
Confidence 3799999999986
No 142
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=55.38 E-value=6.7 Score=25.02 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=12.3
Q ss_pred ccChHHHHHHHHhh
Q 047061 81 ERSPLLSAWMREFA 94 (127)
Q Consensus 81 eKfP~L~~W~erm~ 94 (127)
+.||+|.+|+++|.
T Consensus 75 ~~~p~l~~~~~r~~ 88 (88)
T cd03193 75 KEYPNLVEYCERIR 88 (88)
T ss_pred HhCcHHHHHHHHhC
Confidence 57999999999973
No 143
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=52.40 E-value=7.9 Score=25.26 Aligned_cols=14 Identities=43% Similarity=0.918 Sum_probs=12.2
Q ss_pred cccChHHHHHHHHh
Q 047061 80 RERSPLLSAWMREF 93 (127)
Q Consensus 80 ~eKfP~L~~W~erm 93 (127)
.++||+|.+|.++|
T Consensus 85 ~~~~p~l~~w~~rm 98 (98)
T cd03205 85 RAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHhC
Confidence 36899999999986
No 144
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=51.40 E-value=7.9 Score=24.99 Aligned_cols=16 Identities=19% Similarity=0.573 Sum_probs=13.3
Q ss_pred ccccChHHHHHHHHhh
Q 047061 79 ERERSPLLSAWMREFA 94 (127)
Q Consensus 79 d~eKfP~L~~W~erm~ 94 (127)
+.++||+|.+|+++++
T Consensus 90 ~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 90 DLADYPAIRAWLARIE 105 (105)
T ss_pred ChHhCccHHHHHHhhC
Confidence 3578999999999874
No 145
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=51.37 E-value=42 Score=21.15 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 34 IVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 34 v~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
+.-++++.|++++++.+| ..++-.+.+-. .+|++
T Consensus 20 ~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~--~vPti 53 (76)
T TIGR00412 20 VKKAVEELGIDAEFEKVT---DMNEILEAGVT--ATPGV 53 (76)
T ss_pred HHHHHHHcCCCeEEEEeC---CHHHHHHcCCC--cCCEE
Confidence 355788899999988887 12333344444 69988
No 146
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=47.85 E-value=9.6 Score=24.79 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=12.1
Q ss_pred cccChHHHHHHHHh
Q 047061 80 RERSPLLSAWMREF 93 (127)
Q Consensus 80 ~eKfP~L~~W~erm 93 (127)
.++||+|.+|++++
T Consensus 91 ~~~~p~l~~~~~~~ 104 (104)
T cd03192 91 LKKYPKLKALRERV 104 (104)
T ss_pred HHhChhHHHHHHhC
Confidence 46899999999985
No 147
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=44.91 E-value=12 Score=23.46 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=12.0
Q ss_pred cccChHHHHHHHHh
Q 047061 80 RERSPLLSAWMREF 93 (127)
Q Consensus 80 ~eKfP~L~~W~erm 93 (127)
.++||+|.+|++++
T Consensus 87 ~~~~p~l~~~~~~~ 100 (100)
T cd00299 87 LDEYPRLAAWYDRL 100 (100)
T ss_pred hccCccHHHHHHhC
Confidence 36899999999875
No 148
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=40.36 E-value=30 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=14.4
Q ss_pred HHHHHHHHhhCCCceEEEc
Q 047061 32 WRIVWALKLSGIQFDFIDE 50 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~v 50 (127)
++++-.|++.||+|+.+++
T Consensus 10 rka~~~L~~~gi~~~~~d~ 28 (110)
T PF03960_consen 10 RKALKWLEENGIEYEFIDY 28 (110)
T ss_dssp HHHHHHHHHTT--EEEEET
T ss_pred HHHHHHHHHcCCCeEeehh
Confidence 7888899999999998654
No 149
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=35.82 E-value=21 Score=25.37 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=14.0
Q ss_pred cccChHHHHHHHHhhc
Q 047061 80 RERSPLLSAWMREFAE 95 (127)
Q Consensus 80 ~eKfP~L~~W~erm~e 95 (127)
.++||+|.+|++|+.+
T Consensus 119 ~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 119 LKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHCcHHHHHHHHHHH
Confidence 3689999999999875
No 150
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=31.28 E-value=25 Score=24.48 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=12.4
Q ss_pred cccChHHHHHHHHh
Q 047061 80 RERSPLLSAWMREF 93 (127)
Q Consensus 80 ~eKfP~L~~W~erm 93 (127)
.++||+|.+|.+||
T Consensus 112 ~~~~pnL~~y~~Ri 125 (126)
T cd03211 112 VKKYSNLLAFCRRI 125 (126)
T ss_pred HHhCcHHHHHHHhc
Confidence 36899999999997
No 151
>PRK10824 glutaredoxin-4; Provisional
Probab=29.28 E-value=67 Score=22.60 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=28.4
Q ss_pred HHHHHHHHhhCCCceEEEccCCC-CChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSN-KSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~-k~~~~~~~nP~~~~vPvl 72 (127)
+++.-+|..+|++|+.++++-.. -...+....-. .+||-+
T Consensus 34 ~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQI 74 (115)
T PRK10824 34 AQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQL 74 (115)
T ss_pred HHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeE
Confidence 88999999999999988775431 12345555555 489977
No 152
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=26.17 E-value=1.5e+02 Score=17.46 Aligned_cols=39 Identities=15% Similarity=-0.056 Sum_probs=19.2
Q ss_pred HHHHHHHHhh---CCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLS---GIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ek---Gi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
.++.-.|+++ +-.+++..+|..+ .++.....-+ ..+|++
T Consensus 15 ~~~~~~l~~l~~~~~~i~~~~id~~~-~~~l~~~~~i-~~vPti 56 (67)
T cd02973 15 PDAVQAANRIAALNPNISAEMIDAAE-FPDLADEYGV-MSVPAI 56 (67)
T ss_pred HHHHHHHHHHHHhCCceEEEEEEccc-CHhHHHHcCC-cccCEE
Confidence 5555555554 2124444455443 3444444444 368876
No 153
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=24.37 E-value=2.6e+02 Score=22.96 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCccccccccceecccccChHHHHHHHHhhcChhhhhcCCCHHHH
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVVDGFKIIERERSPLLSAWMREFAEVPLIIKNRPPYEKL 109 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl~g~~lld~eKfP~L~~W~erm~e~P~Vke~lP~~ekl 109 (127)
.+|...|+..+|+||+++-.+.. .+.. |++|-+ + ++.+++.-..-=..++.++=.+..+|++.++-
T Consensus 65 lKvEt~lR~~~IpYE~~~~~~~~-------rSr~-G~lPFI---E-LNGe~iaDS~~I~~~L~~hf~~~~~L~~e~~a 130 (281)
T KOG4244|consen 65 LKVETFLRAYDIPYEIVDCSLKR-------RSRN-GTLPFI---E-LNGEHIADSDLIEDRLRKHFKIPDDLSAEQRA 130 (281)
T ss_pred HHHHHHHHHhCCCceecccccee-------eccC-CCcceE---E-eCCeeccccHHHHHHHHHHcCCCCCCCHHHHH
Confidence 89999999999999999765532 3355 477744 1 23334433333344555555555556666543
No 154
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=22.89 E-value=1.5e+02 Score=18.46 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=21.7
Q ss_pred HHHHHHHHhhCCCceEEEccCCCCChHHHHhCCCCcccccc
Q 047061 32 WRIVWALKLSGIQFDFIDEDLSNKSPLLIRCNPVYNKISVV 72 (127)
Q Consensus 32 ~rv~l~l~ekGi~~e~~~vdl~~k~~~~~~~nP~~~~vPvl 72 (127)
..+.-++.+.|+.++++++ ...++. ...-+ ..+|++
T Consensus 18 ~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv-~~vPal 53 (76)
T PF13192_consen 18 QLLKEAAEELGIEVEIIDI---EDFEEI-EKYGV-MSVPAL 53 (76)
T ss_dssp HHHHHHHHHTTEEEEEEET---TTHHHH-HHTT--SSSSEE
T ss_pred HHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCC-CCCCEE
Confidence 4455677788888877764 223344 34444 279987
No 155
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=20.54 E-value=1.7e+02 Score=19.84 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=31.9
Q ss_pred ccceecccccChHH---HHHHHHhhc-ChhhhhcCCCHHHHHHHHHHHHH
Q 047061 73 DGFKIIERERSPLL---SAWMREFAE-VPLIIKNRPPYEKLLAKFHAVRQ 118 (127)
Q Consensus 73 ~g~~lld~eKfP~L---~~W~erm~e-~P~Vke~lP~~ekl~~~~k~~~~ 118 (127)
+|.+|+|..-=-.| -.|.+.|++ .....++-|+.|.+-+|+..+..
T Consensus 27 gGyEIVDK~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 27 GGYEIVDKNARREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGGYDA 76 (85)
T ss_pred CCcEEeecCCCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 57777663111111 368888877 67777789999999999887654
Done!