BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047062
         (253 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
           The Yeast Chd1 Chromatin Remodeler
          Length = 800

 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 93  VQISNVQLEQYCGTXXXXXXXXXXXXXNDPVGVLHDILISARKCCDHPYLVDKSLQSLLV 152
           V++S+VQ E Y                     +L +I+   +K  +HPYL D + + +L 
Sbjct: 477 VELSDVQTEYYKNILTKNYSALTAGAKGGHFSLL-NIMNELKKASNHPYLFDNAEERVLQ 535

Query: 153 K----DLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
           K     +     L   + +SGK+ LLD +L+ LK  G RV+I  Q++
Sbjct: 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMV 582


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,382,290
Number of Sequences: 62578
Number of extensions: 215299
Number of successful extensions: 469
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 6
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)