BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047062
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M658|MOM1_ARATH Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1
Length = 2001
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 80 KLDSSRFVEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDH 139
K SS + EYW+PVQ+S+VQLEQYC TL SKSLSL S K D +G L + L S RK CDH
Sbjct: 471 KFYSSVYPEYWVPVQLSDVQLEQYCQTLFSKSLSLSSLSKID-LGALEETLNSVRKTCDH 529
Query: 140 PYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQ 193
PY++D SL+ LL K+LEL E LDV +KASGKL LLD ML+ +K G + ++ +Q
Sbjct: 530 PYVMDASLKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKKNGLKAVVFYQ 583
>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Mus musculus
GN=Smarca5 PE=1 SV=1
Length = 1051
Score = 58.9 bits (141), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E I V +S +Q E Y L+ L S K D + +L +IL+ RKCC+HPYL D +
Sbjct: 408 EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLL-NILMQLRKCCNHPYLFDGAE 466
Query: 148 QSL-LVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQI 194
D+ L V SGK+ +LD +L +LK QGSRV+I Q+
Sbjct: 467 PGPPYTTDMHL-------VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 507
>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Homo sapiens
GN=SMARCA5 PE=1 SV=1
Length = 1052
Score = 58.9 bits (141), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E I V +S +Q E Y L+ L S K D + +L +IL+ RKCC+HPYL D +
Sbjct: 409 EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLL-NILMQLRKCCNHPYLFDGAE 467
Query: 148 QSL-LVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQI 194
D+ L V SGK+ +LD +L +LK QGSRV+I Q+
Sbjct: 468 PGPPYTTDMHL-------VTNSGKMVVLDKLLPKLKEQGSRVLIFSQM 508
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 58.2 bits (139), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDP-VGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ + S V L + ++ RKCC+HPYL++ +
Sbjct: 1203 ETIIEVELTNIQ-KKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGA 1261
Query: 147 LQSLL--VKDLELAE----YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L K+ AE L ++A+GKL L+D +L +LK G RV+I Q++
Sbjct: 1262 EEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMV 1316
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 58.2 bits (139), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDP-VGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ + S V L + ++ RKCC+HPYL++ +
Sbjct: 1193 ETIIEVELTNIQ-KKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGA 1251
Query: 147 LQSLL--VKDLELAE----YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L K+ AE L ++A+GKL L+D +L +LK G RV+I Q++
Sbjct: 1252 EEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMV 1306
>sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens
GN=SMARCA1 PE=1 SV=2
Length = 1054
Score = 57.4 bits (137), Expect = 9e-08, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E I + +S +Q E Y L+ L S K D + +L +IL+ RKCC+HPYL D +
Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLL-NILMQLRKCCNHPYLFDGAE 470
Query: 148 QSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQI 194
E++ V SGK+ +LD +L++LK QGSRV+I Q+
Sbjct: 471 PG---PPYTTDEHI---VSNSGKMVVLDKLLAKLKEQGSRVLIFSQM 511
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila
melanogaster GN=Chd1 PE=1 SV=1
Length = 1883
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKS 146
VE + V+++++Q +QY +L+K+ K +I+I +KCC+H L+ S
Sbjct: 757 VEQILRVEMTSLQ-KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPS 815
Query: 147 LQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
L+ L+ E L +K SGKL LLD +L LK G RV+I Q++
Sbjct: 816 EFELM--GLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMV 862
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus
GN=Chd8 PE=1 SV=2
Length = 2581
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSP-LKNDPVGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ S S + + L + ++ RKCC+HPYL++ +
Sbjct: 1046 ETIIEVELTNIQ-KKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGA 1104
Query: 147 LQSLLVKDLELAE------YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L++ E +L V+++GKL L+D +L +LK G +V+I Q++
Sbjct: 1105 EEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMV 1159
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSP-LKNDPVGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ S S + + L + ++ RKCC+HPYL++ +
Sbjct: 1048 ETIIEVELTNIQ-KKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGA 1106
Query: 147 LQSLLVKDLELAE------YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L++ E +L V+++GKL L+D +L +LK G +V+I Q++
Sbjct: 1107 EEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMV 1161
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 9/116 (7%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCS--PLKNDPVGVLHDILISARKCCDHPYLVDK 145
E I V++++VQ ++Y +L ++ S S +N V L + ++ RKCC+HPYL+
Sbjct: 1082 ETIIEVELTDVQ-KKYYRAILERNFSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLITG 1140
Query: 146 SLQSLLVKDLELAE------YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ + ++ + E+ + +L V+++GKL LLD +L LK G +V+I Q++
Sbjct: 1141 AEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMV 1196
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSP-LKNDPVGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ S S + + L + ++ RKCC+HPYL++ +
Sbjct: 1046 ETIIEVELTNIQ-KKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGA 1104
Query: 147 LQSLLVKDLELAE------YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L + E +L V+++GKL L+D +L +LK G +V+I Q++
Sbjct: 1105 EEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMV 1159
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDP-VGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ + S V L + ++ RKCC+HPYL++ +
Sbjct: 1204 ETIIEVELTNIQ-KKYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGA 1262
Query: 147 LQSLL--VKDLELAE----YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L K+ A+ L ++A+GKL L+D +L +LK G RV+I Q++
Sbjct: 1263 EEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMV 1317
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E+ + V++S++Q +++ +L+K+ + V L +I++ RKCC+HPYL +
Sbjct: 507 EFIVRVELSSMQ-KKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAA 565
Query: 148 QSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQI 194
+ + L E + KASGKL LL ML +LK RV++ Q+
Sbjct: 566 EEATISPSGLYEMSSL-TKASGKLDLLSKMLKQLKADNHRVLLFSQM 611
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 54.7 bits (130), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E I + +S +Q E Y L+ L S K D + +L +IL+ RKCC+HPYL D +
Sbjct: 416 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLL-NILMQLRKCCNHPYLFDGAE 474
Query: 148 QSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQI 194
E++ V SGK+ LD +L+ +K QGSRV+I Q+
Sbjct: 475 PG---PPYTTDEHI---VGNSGKMVALDKLLARIKEQGSRVLIFSQM 515
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSP---LKNDPVGVLHDILISARKCCDHPYLVD 144
E I V+++N+Q ++Y +L K+ S + N P L + ++ RKCC+HPYL+
Sbjct: 990 ETIIEVELTNIQ-KKYYRAILEKNFSFLTKGASQSNTPN--LLNTMMELRKCCNHPYLIT 1046
Query: 145 KSLQSLLVKDLELAE------YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ + ++ + E ++ V++SGKL L+D +L +L+ G +V+I Q++
Sbjct: 1047 GAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLLPKLRAGGHKVLIFSQMV 1103
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSP-LKNDPVGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ S S V L + ++ RKCC+HPYL+ +
Sbjct: 1095 ETIIEVELTNIQ-KKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGA 1153
Query: 147 LQSLLVKDLELAE------YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L + + +L ++++GKL L+D +L ++K G +V+I Q++
Sbjct: 1154 EEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMV 1208
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSP-LKNDPVGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ S S V L + ++ RKCC+HPYL+ +
Sbjct: 1094 ETIIEVELTNIQ-KKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGA 1152
Query: 147 LQSLLVKDLELAE------YLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L + + +L ++++GKL L+D +L ++K G +V+I Q++
Sbjct: 1153 EEKILGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMV 1207
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila
melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 19 EKLDGELCDASIAKQTTEYHNMPSLHESRGDVHRKDDLMVDAIDNLGSLKEKTSKYVAYG 78
+ GE D S +Q H M H R L D + N+ S
Sbjct: 930 QAFQGEFADVSKEEQVKRLHEMLGPHMLR-------RLKTDVLKNMPS------------ 970
Query: 79 GKLDSSRFVEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCD 138
S F+ + V++S +Q +++ +L+K+ + L +I++ +KCC+
Sbjct: 971 ----KSEFI---VRVELSAMQ-KKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCN 1022
Query: 139 HPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQI 194
HPYL + + L E ++ KA+GKL LL ML +LK Q RV+I Q+
Sbjct: 1023 HPYLFPSAAEEATTAAGGLYE-INSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQM 1077
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
PE=1 SV=3
Length = 2000
Score = 52.0 bits (123), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E + V++S +Q + Y L +L S + V +L +I++ +KCC+HPYL +
Sbjct: 981 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLL-NIMMDLKKCCNHPYLF--PV 1037
Query: 148 QSLLVKDLELAEYLDVG-VKASGKLQLLDTMLSELKNQGSRVIILFQI 194
++ L Y +K+SGKL LL ML +LK QG RV+I Q+
Sbjct: 1038 AAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQM 1085
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQG 185
L +I++ RKCC+HPYL++ + + ++ ++ E L V SGK +LD ML ELK +G
Sbjct: 560 LQNIMMLLRKCCNHPYLIEYPIDP-VTQEFKIDEEL---VTNSGKFLILDRMLPELKKRG 615
Query: 186 SRVIILFQI 194
+V++ Q+
Sbjct: 616 HKVLLFSQM 624
>sp|Q7ZU90|CHD1L_DANRE Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio
GN=chd1l PE=2 SV=1
Length = 1026
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQG 185
L ++L+ RKC DHPYL D + + E+ E+L V+ASGKL LLD+ML+ L+ G
Sbjct: 300 LLNVLMQLRKCVDHPYLFD----GVEPEPFEMGEHL---VEASGKLSLLDSMLAYLQEGG 352
Query: 186 SRVIILFQI 194
V++ Q+
Sbjct: 353 HHVLLFSQM 361
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2
Length = 821
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 117 PLKNDPVGVLHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDT 176
P++++ L +I++ RKCC+HPY+++ + + ++ ++ E L V SGK +LD
Sbjct: 534 PIESEVNLKLRNIMMLLRKCCNHPYMIEYPIDP-VTQEFKIDEEL---VTNSGKFLILDR 589
Query: 177 MLSELKNQGSRVIILFQI 194
ML ELK +G +V++ Q+
Sbjct: 590 MLPELKKRGHKVLVFSQM 607
>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
GN=Chd1l PE=2 SV=1
Length = 900
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQG 185
L +IL RKC DHPYL D + + E+ E+L ++ASGKL LLD +L+ L + G
Sbjct: 305 LQNILTQLRKCVDHPYLFD----GVEPEPFEVGEHL---IEASGKLHLLDRLLAFLYSGG 357
Query: 186 SRVIILFQI 194
RV++ Q+
Sbjct: 358 HRVLLFSQM 366
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5
PE=2 SV=1
Length = 1954
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 91 IPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQSL 150
+ V++S +Q + Y L +L S + V +L +I++ +KCC+HPYL + ++
Sbjct: 948 VRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLL-NIMMDLKKCCNHPYLF--PVAAV 1004
Query: 151 LVKDLELAEYLDVG-VKASGKLQLLDTMLSELKNQGSRVIILFQI 194
L Y VK+SGKL LL ML +L+++G RV+I Q+
Sbjct: 1005 EAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQM 1049
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 10/116 (8%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKND-PVGVLHDILISARKCCDHPYLVDKS 146
E I V+++N+Q ++Y +L K+ S + N + L + ++ RKCC+HPYL++ +
Sbjct: 696 ETIIEVELTNIQ-KKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGA 754
Query: 147 LQSLLVKDLELAEYLDVG-------VKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L +D D ++A+GKL L+D +L +L G +V+I Q++
Sbjct: 755 EEKIL-EDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMV 809
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
PE=1 SV=2
Length = 1828
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKS 146
VE + V++S +Q + Y L +L + G L +I++ +KCC+H YL+
Sbjct: 713 VEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFL-NIVMELKKCCNHCYLIKPP 771
Query: 147 LQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILII 197
++ E+ L +++SGKL LLD +L+ L+ +G+RV+I Q++ +
Sbjct: 772 EENERENGQEILLSL---IRSSGKLILLDKLLTRLRERGNRVLIFSQMVRM 819
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 50.8 bits (120), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E + V++S+VQ E Y L +L + K +L +I+ +K +HPYL D +
Sbjct: 611 ERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLL-NIMNELKKASNHPYLFDNAE 669
Query: 148 QSLLVK----DLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ +L K + L + +SGK+ LLD +L+ LK G RV+I Q++
Sbjct: 670 ERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMV 721
>sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila
melanogaster GN=Iswi PE=1 SV=1
Length = 1027
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E I V +S +Q + Y LL K + + + L +IL+ RKC +HPYL D +
Sbjct: 357 EMKIFVGLSKMQRDWYTKVLL-KDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAE 415
Query: 148 QSL-LVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQ---ILIIRAKVCE 203
D L V SGK+ +LD +L +L+ QGSRV+I Q +L I C
Sbjct: 416 PGPPYTTDTHL-------VYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCH 468
Query: 204 NEILGYC 210
YC
Sbjct: 469 WRNYNYC 475
>sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus
GN=CHD1L PE=2 SV=1
Length = 897
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQG 185
L ++L RKC DHPYL D + + E+ ++L ++ASGKL LLD +L+ L ++G
Sbjct: 313 LQNVLSQLRKCVDHPYLFD----GVEPEPFEIGDHL---IEASGKLHLLDKLLAFLYSKG 365
Query: 186 SRVIILFQI 194
RV++ Q+
Sbjct: 366 HRVLLFSQM 374
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E + V++S +Q + Y +L+++ + L ++L+ +KCC+HPYL K+
Sbjct: 847 ELIVRVELSAMQKKWY-KNILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKAE 905
Query: 148 QSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQ---ILIIRAKVCEN 204
+ + E + +K SGK LL ML +LK+ G RV+I Q +L I +CE
Sbjct: 906 LEAPKEKNGMYEGTAL-IKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEY 964
Query: 205 EILGY 209
E GY
Sbjct: 965 E--GY 967
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E + V +S +Q E Y L+ K + + + L +IL+ RKC +HPYL D +
Sbjct: 361 EVKVYVGLSKMQREWYTKVLM-KDIDIINGAGKVEKARLMNILMHLRKCVNHPYLFDGAE 419
Query: 148 QSL-LVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQ 193
D L V SGK+ +LD +L + K QGSRV+I Q
Sbjct: 420 PGPPFTTDQHL-------VDNSGKMVVLDKLLMKFKEQGSRVLIFSQ 459
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog
OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 91 IPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQSL 150
+ V++S +Q ++Y +L+++ + L +I++ +KCC+HPYL K+ L
Sbjct: 864 VRVELSAMQ-KKYYKNILTRNFDALNVKNGGTQMSLINIIMELKKCCNHPYLFMKAC--L 920
Query: 151 LVKDLELAEYLDVG-VKASGKLQLLDTMLSELKNQGSRVIILFQILII 197
L+ Y +K +GK LL ML +LK+ G RV+I Q+ ++
Sbjct: 921 EAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMM 968
>sp|Q86WJ1|CHD1L_HUMAN Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens
GN=CHD1L PE=1 SV=2
Length = 897
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQG 185
L +IL RKC DHPYL D + + E+ ++L +ASGKL LLD +L+ L + G
Sbjct: 311 LQNILSQLRKCVDHPYLFD----GVEPEPFEVGDHL---TEASGKLHLLDKLLAFLYSGG 363
Query: 186 SRVIILFQI 194
RV++ Q+
Sbjct: 364 HRVLLFSQM 372
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPL--KNDPVGVLHDILISARKCCDHPYLVD 144
+E + V ++++Q++ Y +LL K + + K + L +I++ RKCC+HPYL +
Sbjct: 413 IETNVYVGMTDMQIQWY-KSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFE 471
Query: 145 KSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQ---ILIIRAKV 201
+ E+L + SGK+ +LD +L LK +GSRV+I Q +L I
Sbjct: 472 GAEPG---PPYTTDEHL---IFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDY 525
Query: 202 CENEILGYC 210
C YC
Sbjct: 526 CYFRDFEYC 534
>sp|O14139|HRP3_SCHPO Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp3 PE=1 SV=1
Length = 1388
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 93 VQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQSLLV 152
V++S++Q+ Y L L + + L +I++ +K +HPYL D +S +
Sbjct: 611 VELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVVELKKASNHPYLFDGVEESWMQ 670
Query: 153 K---DLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
K E L + SGK+ LLD +LS L+ G RV+I Q++
Sbjct: 671 KINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMV 716
>sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis
thaliana GN=PKL PE=1 SV=1
Length = 1384
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 88 EYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSL 147
E + V +S++Q E Y + +++ + + + L++I++ RK C HPY+++ +
Sbjct: 520 ELILRVDLSSLQKE-YYKAIFTRNYQVLTKKGGAQIS-LNNIMMELRKVCCHPYMLE-GV 576
Query: 148 QSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQI 194
+ ++ E + L +++ GKLQLLD M+ +LK QG RV+I Q
Sbjct: 577 EPVIHDANEAFKQL---LESCGKLQLLDKMMVKLKEQGHRVLIYTQF 620
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 48 GDVHRKDDLMVDAID-----NLGSLKEKTSKYVAYGGKLDSSRFV----EYWIPVQISNV 98
G + +D+L D + ++ L+E+ ++ K D + + E + V++S++
Sbjct: 573 GKFYIRDELNFDQPNAEQERDIRDLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDM 632
Query: 99 QLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQSLLV-KDLEL 157
Q E Y L +L L +I++ +K +HPYL + + ++ + +
Sbjct: 633 QTEWYKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTR 692
Query: 158 AEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQIL 195
+ L + SGK+ LLD +L LK+ G RV+I Q++
Sbjct: 693 EDTLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMV 730
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STH1 PE=1 SV=1
Length = 1359
Score = 39.7 bits (91), Expect = 0.020, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQG 185
L++ ++ RK C+HP++ D+ ++ ++ ++ L + +GK +LLD +L + K G
Sbjct: 752 LNNKIMQLRKICNHPFVFDE-VEGVVNPSRGNSDLL---FRVAGKFELLDRVLPKFKASG 807
Query: 186 SRVIILFQI 194
RV++ FQ+
Sbjct: 808 HRVLMFFQM 816
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGV--LHDILISARKCCDHPYLVD 144
VE I Q+S +Q + Y + + K G+ L + ++ +K C+HP++ +
Sbjct: 657 VEKVIRCQMSGLQQKLYY-QMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKKICNHPFVFE 715
Query: 145 KSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILII 197
+S+ D Y D+ + SGK +LLD +L +L G R+++ FQ+ I
Sbjct: 716 DVERSI---DPTGFNY-DMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQI 764
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 126 LHDILISARKCCDHPYL---VDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELK 182
L + ++ RK C+HPY+ +++S L + + LD+ +ASGK +LLD +L +L+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL-YRASGKFELLDRILPKLR 1093
Query: 183 NQGSRVIILFQI 194
+V++ Q+
Sbjct: 1094 ATNHKVLLFCQM 1105
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 126 LHDILISARKCCDHPYL---VDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELK 182
L + ++ RK C+HPY+ +++S L + + LD+ +ASGK +LLD +L +L+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL-YRASGKFELLDRILPKLR 1093
Query: 183 NQGSRVIILFQI 194
+V++ Q+
Sbjct: 1094 ATNHKVLLFCQM 1105
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 126 LHDILISARKCCDHPYL---VDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELK 182
L + ++ RK C+HPY+ +++S L + + LD+ +ASGK +LLD +L +L+
Sbjct: 1027 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL-YRASGKFELLDRILPKLR 1085
Query: 183 NQGSRVIILFQI 194
+V++ Q+
Sbjct: 1086 ATNHKVLLFCQM 1097
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 39.3 bits (90), Expect = 0.025, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 126 LHDILISARKCCDHPYL---VDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELK 182
L + ++ RK C+HPY+ +++S L + + LD+ +ASGK +LLD +L +L+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDL-YRASGKFELLDRILPKLR 1093
Query: 183 NQGSRVIILFQI 194
+V++ Q+
Sbjct: 1094 ATNHKVLLFCQM 1105
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 38.9 bits (89), Expect = 0.034, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGV--LHDILISARKCCDHPYLVD 144
VE + ++S +Q Y L + L + VG+ ++ ++ +K C+HP++ +
Sbjct: 1007 VEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFE 1066
Query: 145 KSLQSLLVKDL--ELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILII 197
+ V+D E D + +GK +LLD +L +LK G RV+I FQ+ I
Sbjct: 1067 E------VEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQI 1115
>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1
PE=1 SV=3
Length = 1711
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKS 146
VE + +++S +Q + Y L +L K G L +I++ +KCC+H YL+
Sbjct: 708 VEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFL-NIMMELKKCCNHCYLIKPP 766
Query: 147 LQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILII 197
+ E ++L +++SGKL LLD +L L+ +G+RV+I Q++ +
Sbjct: 767 DNNEFYNKQEALQHL---IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRM 814
>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1
PE=1 SV=2
Length = 1710
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKS 146
VE + +++S +Q + Y L +L K G L +I++ +KCC+H YL+
Sbjct: 710 VEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFL-NIMMELKKCCNHCYLIKPP 768
Query: 147 LQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILII 197
+ E ++L +++SGKL LLD +L L+ +G+RV+I Q++ +
Sbjct: 769 DNNEFYNKQEALQHL---IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRM 816
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 37.7 bits (86), Expect = 0.076, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDV--GV-------KASGKLQLLDT 176
L + ++ RK C+HPY+ +S AE+L GV +ASGK +LLD
Sbjct: 1010 LMNTIMQLRKICNHPYMFQHIEESF-------AEHLGYSNGVINGAELYRASGKFELLDR 1062
Query: 177 MLSELKNQGSRVIILFQI 194
+L +L+ RV++ Q+
Sbjct: 1063 ILPKLRATNHRVLLFCQM 1080
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 37.7 bits (86), Expect = 0.076, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 126 LHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDV--GV-------KASGKLQLLDT 176
L + ++ RK C+HPY+ +S AE+L GV +ASGK +LLD
Sbjct: 1005 LMNTIMQLRKICNHPYMFQHIEESF-------AEHLGYSNGVINGAELYRASGKFELLDR 1057
Query: 177 MLSELKNQGSRVIILFQI 194
+L +L+ RV++ Q+
Sbjct: 1058 ILPKLRATNHRVLLFCQM 1075
>sp|B6ZLK2|CHD1_CHICK Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus
GN=CHD1 PE=1 SV=1
Length = 1719
Score = 37.7 bits (86), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 87 VEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKS 146
VE + +++S +Q + Y L +L K G L +I++ +KCC+H YL+
Sbjct: 706 VEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFL-NIMMELKKCCNHCYLIKPP 764
Query: 147 LQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILII 197
+ E ++L +++SGKL LLD +L L+ +G+RV+I Q++ +
Sbjct: 765 DDNEFYNKQEALQHL---IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRM 812
>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS)
GN=INO80 PE=3 SV=1
Length = 1662
Score = 36.2 bits (82), Expect = 0.22, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 165 VKASGKLQLLDTMLSELKNQGSRVIILFQI 194
V SGKL LD +L ELKN G RV++ FQ+
Sbjct: 1376 VTDSGKLAKLDELLRELKNGGHRVLLYFQM 1405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,708,211
Number of Sequences: 539616
Number of extensions: 3597515
Number of successful extensions: 9372
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 9233
Number of HSP's gapped (non-prelim): 124
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)