Query 047062
Match_columns 253
No_of_seqs 170 out of 1275
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 8.5E-37 2.9E-41 303.3 13.5 230 2-239 378-619 (800)
2 1z3i_X Similar to RAD54-like; 100.0 4.1E-35 1.4E-39 285.1 12.2 230 2-239 203-463 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.1E-29 3.9E-34 238.6 14.9 217 2-239 160-389 (500)
4 3hgt_A HDA1 complex subunit 3; 99.9 4.7E-27 1.6E-31 209.4 8.4 137 84-230 21-163 (328)
5 1z5z_A Helicase of the SNF2/RA 99.9 7E-24 2.4E-28 185.9 9.8 145 75-240 13-161 (271)
6 3dmq_A RNA polymerase-associat 99.4 9.9E-13 3.4E-17 133.0 9.2 197 11-240 296-552 (968)
7 1wp9_A ATP-dependent RNA helic 98.8 1.4E-08 4.6E-13 92.6 8.8 66 166-238 340-415 (494)
8 2fwr_A DNA repair protein RAD2 97.7 1.1E-05 3.8E-10 74.5 1.6 60 165-238 331-390 (472)
9 4a2w_A RIG-I, retinoic acid in 97.6 0.00013 4.5E-09 73.5 9.4 66 167-238 611-689 (936)
10 4a2q_A RIG-I, retinoic acid in 97.4 0.00081 2.8E-08 66.4 11.8 67 167-239 611-690 (797)
11 4a2p_A RIG-I, retinoic acid in 97.3 0.0019 6.5E-08 60.0 12.2 66 167-238 370-448 (556)
12 3tbk_A RIG-I helicase domain; 97.2 0.003 1E-07 58.5 12.4 68 166-239 368-448 (555)
13 2ykg_A Probable ATP-dependent 96.5 0.012 4.3E-07 56.5 10.4 65 167-238 378-456 (696)
14 2oca_A DAR protein, ATP-depend 96.1 0.045 1.5E-06 50.5 11.5 63 168-238 330-393 (510)
15 1t5i_A C_terminal domain of A 95.9 0.019 6.6E-07 45.5 7.0 66 165-239 13-78 (172)
16 2hjv_A ATP-dependent RNA helic 95.9 0.021 7.3E-07 44.7 7.2 66 165-239 17-82 (163)
17 2jgn_A DBX, DDX3, ATP-dependen 95.8 0.011 3.7E-07 47.7 5.3 67 165-239 27-93 (185)
18 1fuk_A Eukaryotic initiation f 95.4 0.038 1.3E-06 43.3 6.9 61 170-239 17-77 (165)
19 2rb4_A ATP-dependent RNA helic 95.2 0.044 1.5E-06 43.3 6.6 62 169-239 20-81 (175)
20 2p6n_A ATP-dependent RNA helic 95.1 0.029 9.9E-07 45.4 5.6 65 165-239 37-101 (191)
21 3eaq_A Heat resistant RNA depe 93.4 0.17 5.8E-06 41.4 6.7 65 166-239 14-78 (212)
22 2yjt_D ATP-dependent RNA helic 91.5 0.026 8.8E-07 44.5 0.0 56 168-232 15-70 (170)
23 3i32_A Heat resistant RNA depe 90.9 0.63 2.2E-05 40.4 7.5 66 165-239 10-75 (300)
24 4gl2_A Interferon-induced heli 89.5 0.2 6.7E-06 48.1 3.3 66 167-239 379-461 (699)
25 1xti_A Probable ATP-dependent 88.8 1 3.6E-05 39.2 7.3 63 167-238 234-296 (391)
26 1s2m_A Putative ATP-dependent 85.2 1.7 5.8E-05 38.1 6.6 64 166-238 241-304 (400)
27 2i4i_A ATP-dependent RNA helic 85.2 1.8 6.2E-05 38.1 6.8 64 167-238 259-322 (417)
28 1hv8_A Putative ATP-dependent 84.9 1.7 5.9E-05 37.2 6.4 62 167-238 223-284 (367)
29 2j0s_A ATP-dependent RNA helic 82.4 3.4 0.00012 36.2 7.5 62 169-239 262-323 (410)
30 2fsf_A Preprotein translocase 79.9 3.5 0.00012 40.9 7.0 66 166-238 422-487 (853)
31 1tf5_A Preprotein translocase 78.8 3.1 0.0001 41.3 6.2 65 167-238 414-478 (844)
32 1nkt_A Preprotein translocase 78.7 3.9 0.00013 40.8 7.0 64 168-238 443-506 (922)
33 3pey_A ATP-dependent RNA helic 78.6 4 0.00014 35.2 6.5 62 168-238 228-289 (395)
34 3jux_A Protein translocase sub 77.4 3.7 0.00013 40.4 6.2 64 168-238 457-520 (822)
35 1hbw_A Regulatory protein GAL4 77.4 1.7 5.9E-05 27.8 2.6 46 28-78 6-51 (57)
36 3eiq_A Eukaryotic initiation f 75.6 4.1 0.00014 35.6 5.7 62 168-238 265-326 (414)
37 2db3_A ATP-dependent RNA helic 75.1 5.8 0.0002 35.6 6.7 63 167-239 285-347 (434)
38 3fht_A ATP-dependent RNA helic 74.7 9 0.00031 33.3 7.7 63 168-239 251-313 (412)
39 4b3f_X DNA-binding protein smu 72.8 11 0.00038 35.8 8.3 54 168-228 216-269 (646)
40 2d7d_A Uvrabc system protein B 71.1 11 0.00039 36.0 8.0 63 168-237 428-490 (661)
41 1c4o_A DNA nucleotide excision 70.9 11 0.00037 36.2 7.8 61 168-235 422-482 (664)
42 3sqw_A ATP-dependent RNA helic 56.5 25 0.00085 32.6 7.2 63 170-238 271-337 (579)
43 3i5x_A ATP-dependent RNA helic 53.6 30 0.001 31.7 7.2 61 172-238 324-388 (563)
44 1oyw_A RECQ helicase, ATP-depe 53.2 35 0.0012 31.4 7.5 63 168-239 221-283 (523)
45 1fuu_A Yeast initiation factor 51.8 3.1 0.0001 36.1 0.0 51 169-228 245-295 (394)
46 2v1x_A ATP-dependent DNA helic 46.4 57 0.0019 30.6 7.9 63 169-238 249-313 (591)
47 3h1t_A Type I site-specific re 45.3 24 0.00081 32.8 5.1 44 183-233 437-489 (590)
48 3sxu_A DNA polymerase III subu 40.1 35 0.0012 26.1 4.5 52 168-225 22-75 (150)
49 3oiy_A Reverse gyrase helicase 38.1 26 0.00088 30.7 3.9 48 168-225 238-286 (414)
50 3fho_A ATP-dependent RNA helic 35.8 18 0.0006 33.2 2.5 53 168-229 342-394 (508)
51 1xx6_A Thymidine kinase; NESG, 35.2 31 0.0011 27.4 3.6 27 166-192 17-43 (191)
52 2j9r_A Thymidine kinase; TK1, 34.5 32 0.0011 28.2 3.6 28 167-194 38-65 (214)
53 2yan_A Glutaredoxin-3; oxidore 32.9 1.2E+02 0.004 20.8 6.2 59 177-244 9-74 (105)
54 1ass_A Thermosome; chaperonin, 31.8 71 0.0024 24.5 5.1 57 170-235 57-113 (159)
55 4as2_A Phosphorylcholine phosp 31.8 30 0.001 30.1 3.1 47 173-227 147-196 (327)
56 3h1t_A Type I site-specific re 31.1 9.4 0.00032 35.6 -0.3 25 18-42 330-354 (590)
57 3zyw_A Glutaredoxin-3; metal b 30.9 86 0.0029 22.2 5.1 50 185-242 15-70 (111)
58 3ipz_A Monothiol glutaredoxin- 29.2 1E+02 0.0035 21.6 5.2 56 185-242 17-72 (109)
59 1gml_A T-complex protein 1 sub 28.2 94 0.0032 24.2 5.3 56 170-234 63-118 (178)
60 2orw_A Thymidine kinase; TMTK, 27.6 52 0.0018 25.6 3.7 29 166-194 12-40 (184)
61 3bh0_A DNAB-like replicative h 27.4 70 0.0024 27.2 4.8 48 166-219 77-124 (315)
62 2b8t_A Thymidine kinase; deoxy 26.9 49 0.0017 27.0 3.5 29 167-195 22-50 (223)
63 2orv_A Thymidine kinase; TP4A 26.4 55 0.0019 27.1 3.7 30 167-196 29-58 (234)
64 2gk6_A Regulator of nonsense t 26.1 1.1E+02 0.0038 28.7 6.3 52 167-225 205-257 (624)
65 3gx8_A Monothiol glutaredoxin- 25.5 1.7E+02 0.0059 20.9 6.1 50 185-242 15-73 (121)
66 1wik_A Thioredoxin-like protei 23.7 1.6E+02 0.0056 20.2 5.5 58 185-244 14-72 (109)
67 2dr3_A UPF0273 protein PH0284; 23.7 1.4E+02 0.0049 23.3 5.8 45 166-218 32-76 (247)
68 3bgw_A DNAB-like replicative h 23.2 62 0.0021 29.2 3.8 50 166-221 206-255 (444)
69 1w4r_A Thymidine kinase; type 23.2 65 0.0022 25.8 3.5 29 166-194 29-57 (195)
70 2hc1_A Receptor-type tyrosine- 22.9 28 0.00094 29.6 1.2 23 20-42 90-112 (291)
71 2wem_A Glutaredoxin-related pr 22.4 1.6E+02 0.0054 21.1 5.3 56 185-242 19-75 (118)
72 1p15_A Protein-tyrosine phosph 22.3 27 0.00093 28.9 1.1 24 19-42 50-73 (253)
73 2obb_A Hypothetical protein; s 22.3 1.4E+02 0.0046 22.5 5.0 42 174-222 29-71 (142)
74 1byy_A Protein (sodium channel 22.1 49 0.0017 20.6 2.0 15 93-107 15-29 (53)
75 3fpn_A Geobacillus stearotherm 21.5 96 0.0033 22.7 3.9 41 183-226 17-57 (119)
76 2eyq_A TRCF, transcription-rep 21.5 1.4E+02 0.0049 30.4 6.4 65 168-239 796-861 (1151)
77 3e2i_A Thymidine kinase; Zn-bi 21.4 76 0.0026 26.0 3.6 31 166-196 37-67 (219)
78 1xjc_A MOBB protein homolog; s 20.9 82 0.0028 24.5 3.6 30 165-194 12-41 (169)
79 3fmp_B ATP-dependent RNA helic 20.8 21 0.00071 32.1 0.0 52 168-228 318-369 (479)
80 4a1f_A DNAB helicase, replicat 20.6 84 0.0029 27.3 3.9 51 166-222 55-105 (338)
81 2wul_A Glutaredoxin related pr 20.2 2.1E+02 0.0071 20.8 5.5 56 185-242 19-75 (118)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-37 Score=303.35 Aligned_cols=230 Identities=20% Similarity=0.239 Sum_probs=185.6
Q ss_pred CCcchHHHHHhhcchhhhcCCcccchhhhhhCHHHHHHHhhhhcCCCCCcc--h--hHHhhhHHhHHHHHHHHhhhhhhh
Q 047062 2 DIDSTKQEILFSLPTSREKLDGELCDASIAKQTTEYHNMPSLHESRGDVHR--K--DDLMVDAIDNLGSLKEKTSKYVAY 77 (253)
Q Consensus 2 ~i~~~k~~~~~~~~~~r~~~~~~LTGTPiQN~L~EL~sL~~Fl~P~~~~~~--~--~~~~~~~~~~~~~L~~~l~pf~LR 77 (253)
+|||..++..+++..+++..||+|||||+||++.|||+|++|+.|+.+... + ..........+..|+..++|||+|
T Consensus 378 ~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 457 (800)
T 3mwy_W 378 RLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILR 457 (800)
T ss_dssp GGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEE
T ss_pred hhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhh
Confidence 478899999999999999999999999999999999999999999855422 1 112233445688999999999999
Q ss_pred ccCCCC----CCceEEEEeecCCHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHcCCccCcchhhhhhhh-
Q 047062 78 GGKLDS----SRFVEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQSLLV- 152 (253)
Q Consensus 78 RtK~dv----P~K~e~vV~~~Ls~~Qr~lY~~~l~~~~~~l~~~~~~~~~~~ll~~L~~LRqiCnHP~L~~~~~~~~~~- 152 (253)
|+|.+| |+|.+.+++|+||+.|+++|+.++.+....+..+... ....+++.++.||++||||+|+.........
T Consensus 458 R~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~-~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~ 536 (800)
T 3mwy_W 458 RLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKG-GHFSLLNIMNELKKASNHPYLFDNAEERVLQK 536 (800)
T ss_dssp CCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCC
T ss_pred hhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcccc-chhhHHHHHHHHHHHhcChhhhcchHHHHHHh
Confidence 999865 9999999999999999999999998777666544433 3457899999999999999999875433211
Q ss_pred ---hhhhHHHHhhhhhhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchH
Q 047062 153 ---KDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVR 229 (253)
Q Consensus 153 ---~~~~~~~~~~~li~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r 229 (253)
......+....++.+|||+.+|.++|.++.+.|+||||||||+. ++++|+.+|.. .|+.|.|++|+|...
T Consensus 537 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~------~ld~L~~~L~~-~g~~~~~i~G~~~~~ 609 (800)
T 3mwy_W 537 FGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVR------MLDILGDYLSI-KGINFQRLDGTVPSA 609 (800)
T ss_dssp C----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHH------HHHHHHHHHHH-HTCCCEEESTTSCHH
T ss_pred cccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHH------HHHHHHHHHHh-CCCCEEEEeCCCCHH
Confidence 11111233455688999999999999999999999999999999 99999999998 899999999999998
Q ss_pred HHHHHHhhhh
Q 047062 230 CIILALCYFW 239 (253)
Q Consensus 230 ~~~~~~~~~~ 239 (253)
.+.-++..|-
T Consensus 610 eR~~~i~~F~ 619 (800)
T 3mwy_W 610 QRRISIDHFN 619 (800)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhh
Confidence 8888887775
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.1e-35 Score=285.11 Aligned_cols=230 Identities=12% Similarity=0.039 Sum_probs=179.2
Q ss_pred CCcchHHHHHhhcchhhhcCCcccchhhhhhCHHHHHHHhhhhcCCCC--CcchhHH-----------------hhhHHh
Q 047062 2 DIDSTKQEILFSLPTSREKLDGELCDASIAKQTTEYHNMPSLHESRGD--VHRKDDL-----------------MVDAID 62 (253)
Q Consensus 2 ~i~~~k~~~~~~~~~~r~~~~~~LTGTPiQN~L~EL~sL~~Fl~P~~~--~~~~~~~-----------------~~~~~~ 62 (253)
+|||.+++..+++..++++.||+|||||+||++.|||+|++|++|+.+ ...|... ...+..
T Consensus 203 ~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~ 282 (644)
T 1z3i_X 203 RLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ 282 (644)
T ss_dssp GCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHH
T ss_pred ecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999632 2233221 122345
Q ss_pred HHHHHHHHhhhhhhhccCCC----CCCceEEEEeecCCHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHcC
Q 047062 63 NLGSLKEKTSKYVAYGGKLD----SSRFVEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCD 138 (253)
Q Consensus 63 ~~~~L~~~l~pf~LRRtK~d----vP~K~e~vV~~~Ls~~Qr~lY~~~l~~~~~~l~~~~~~~~~~~ll~~L~~LRqiCn 138 (253)
.+.+|+..+.|||+||+|++ +|+|.+.+++|+||+.|+++|+.++......... ..+......+..++.|||+||
T Consensus 283 ~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-~~g~~~~~~l~~l~~Lrk~c~ 361 (644)
T 1z3i_X 283 KLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-QTGKISVSSLSSITSLKKLCN 361 (644)
T ss_dssp HHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-CTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-hcCccchhHHHHHHHHHHHhC
Confidence 67889999999999999986 4999999999999999999999988655432221 122344568899999999999
Q ss_pred CccCcchhhhhhhhhhhhHHHH-------hhhhhhcCcHHHHHHHHHHHHHc-CCCeEEEEccccccccchHHHHHHHHH
Q 047062 139 HPYLVDKSLQSLLVKDLELAEY-------LDVGVKASGKLQLLDTMLSELKN-QGSRVIILFQILIIRAKVCENEILGYC 210 (253)
Q Consensus 139 HP~L~~~~~~~~~~~~~~~~~~-------~~~li~~SgKl~~L~~lL~~l~~-~g~KvLIFSq~~~~~~~~~~Ldile~~ 210 (253)
||.++...............+. .......|||+.+|+.++..+.. .|+||||||||+. ++++++.+
T Consensus 362 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~------~~~~l~~~ 435 (644)
T 1z3i_X 362 HPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQ------TLDLFEKL 435 (644)
T ss_dssp CTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHH------HHHHHHHH
T ss_pred CHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHH------HHHHHHHH
Confidence 9999865321100000000000 00113569999999999999874 6899999999999 99999999
Q ss_pred HhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 211 ISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 211 l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
|.. .|+.|.+++|++....+.-.+..|-
T Consensus 436 l~~-~g~~~~~l~G~~~~~~R~~~i~~F~ 463 (644)
T 1z3i_X 436 CRN-RRYLYVRLDGTMSIKKRAKIVERFN 463 (644)
T ss_dssp HHH-HTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred HHH-CCCCEEEEeCCCCHHHHHHHHHHhc
Confidence 998 8999999999999888877777775
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=1.1e-29 Score=238.56 Aligned_cols=217 Identities=14% Similarity=0.115 Sum_probs=177.6
Q ss_pred CCcchHHHHHhhcchhhhcCCcccchhhhhhCHHHHHHHhhhhcCCCCCc--chhHH-----hhhHHhHHHHHHHHhhhh
Q 047062 2 DIDSTKQEILFSLPTSREKLDGELCDASIAKQTTEYHNMPSLHESRGDVH--RKDDL-----MVDAIDNLGSLKEKTSKY 74 (253)
Q Consensus 2 ~i~~~k~~~~~~~~~~r~~~~~~LTGTPiQN~L~EL~sL~~Fl~P~~~~~--~~~~~-----~~~~~~~~~~L~~~l~pf 74 (253)
.|+|..++...++..++++.+|+|||||+||++.|||++++|++|+.+.+ .|... .........+|+..++|+
T Consensus 160 ~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~ 239 (500)
T 1z63_A 160 NIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPF 239 (500)
T ss_dssp GGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTT
T ss_pred ccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhH
Confidence 36788888889999999999999999999999999999999999975432 22221 112335677899999999
Q ss_pred hhhccCCC------CCCceEEEEeecCCHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHcCCccCcchhhh
Q 047062 75 VAYGGKLD------SSRFVEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQ 148 (253)
Q Consensus 75 ~LRRtK~d------vP~K~e~vV~~~Ls~~Qr~lY~~~l~~~~~~l~~~~~~~~~~~ll~~L~~LRqiCnHP~L~~~~~~ 148 (253)
++||+|.+ +|++.+.+++|+|++.|+++|+.+.......+...........++..++.||++|+||.++....
T Consensus 240 ~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~- 318 (500)
T 1z63_A 240 ILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE- 318 (500)
T ss_dssp EECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC-
T ss_pred eeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCcc-
Confidence 99999974 69999999999999999999998887655444433222344568899999999999999876432
Q ss_pred hhhhhhhhHHHHhhhhhhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCch
Q 047062 149 SLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIV 228 (253)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~ 228 (253)
.....|+|+..+.+++.++.+.|+|+||||+|+. +++.++..|....|+.+.+++|.+..
T Consensus 319 --------------~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~------~~~~l~~~l~~~~~~~~~~~~g~~~~ 378 (500)
T 1z63_A 319 --------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVD------MGKIIRNIIEKELNTEVPFLYGELSK 378 (500)
T ss_dssp --------------CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHH------HHHHHHHHHHHHHTCCCCEEETTSCH
T ss_pred --------------chhhcchhHHHHHHHHHHHHccCCcEEEEEehHH------HHHHHHHHHHHhhCCCeEEEECCCCH
Confidence 1166799999999999999999999999999999 99999999986349999999999987
Q ss_pred HHHHHHHhhhh
Q 047062 229 RCIILALCYFW 239 (253)
Q Consensus 229 r~~~~~~~~~~ 239 (253)
..+.-++..|-
T Consensus 379 ~~R~~~~~~F~ 389 (500)
T 1z63_A 379 KERDDIISKFQ 389 (500)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77766666664
No 4
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.94 E-value=4.7e-27 Score=209.39 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=105.7
Q ss_pred CCceEEEEeecCCHHHHHHHHHHHHhcccccc---CCCCCCC---cchHHHHHHHHHHHcCCccCcchhhhhhhhhhhhH
Q 047062 84 SRFVEYWIPVQISNVQLEQYCGTLLSKSLSLC---SPLKNDP---VGVLHDILISARKCCDHPYLVDKSLQSLLVKDLEL 157 (253)
Q Consensus 84 P~K~e~vV~~~Ls~~Qr~lY~~~l~~~~~~l~---~~~~~~~---~~~ll~~L~~LRqiCnHP~L~~~~~~~~~~~~~~~ 157 (253)
|+|.|++++|+||+.|+++|+.++..+...+. .+..... ...+.+++++||+|||||+|+.+...+.....
T Consensus 21 ~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~--- 97 (328)
T 3hgt_A 21 NTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLIT--- 97 (328)
T ss_dssp -CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCS---
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccc---
Confidence 89999999999999999999999876654432 1111111 24678999999999999999953221111000
Q ss_pred HHHhhhhhhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHH
Q 047062 158 AEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRC 230 (253)
Q Consensus 158 ~~~~~~li~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~ 230 (253)
.+..+.+++.|||+++|+++|..+++.|||||||||+++ ||||+|++|.. .||.|.|+||++..+.
T Consensus 98 ~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~------~LDilE~~l~~-~~~~y~RlDG~~~~~~ 163 (328)
T 3hgt_A 98 RDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGR------TMDLLEALLLG-NKVHIKRYDGHSIKSA 163 (328)
T ss_dssp TTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTH------HHHHHHHHHTT-SSCEEEESSSCCC---
T ss_pred cchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChh------HHHHHHHHHhc-CCCceEeCCCCchhhh
Confidence 111234588999999999999999999999999999999 99999999998 9999999999987764
No 5
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.90 E-value=7e-24 Score=185.87 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=111.7
Q ss_pred hhhccCCCC----CCceEEEEeecCCHHHHHHHHHHHHhccccccCCCCCCCcchHHHHHHHHHHHcCCccCcchhhhhh
Q 047062 75 VAYGGKLDS----SRFVEYWIPVQISNVQLEQYCGTLLSKSLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQSL 150 (253)
Q Consensus 75 ~LRRtK~dv----P~K~e~vV~~~Ls~~Qr~lY~~~l~~~~~~l~~~~~~~~~~~ll~~L~~LRqiCnHP~L~~~~~~~~ 150 (253)
=+||+|++| |+|+|.+++|+||+.|+++|+.++.+....+...........+++.+++|||+||||+|+.+..
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 479999976 9999999999999999999999987665544432222234568899999999999999987321
Q ss_pred hhhhhhHHHHhhhhhhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHH
Q 047062 151 LVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRC 230 (253)
Q Consensus 151 ~~~~~~~~~~~~~li~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~ 230 (253)
.....|+|+..|.++|.++.+.|+||||||||+. ++++++.+|....|+.+.+++|++....
T Consensus 90 ------------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~------~~~~l~~~L~~~~g~~~~~l~G~~~~~~ 151 (271)
T 1z5z_A 90 ------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVD------MGKIIRNIIEKELNTEVPFLYGELSKKE 151 (271)
T ss_dssp ------------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHH------HHHHHHHHHHHHHCSCCCEECTTSCHHH
T ss_pred ------------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHH------HHHHHHHHHHHhcCCcEEEEECCCCHHH
Confidence 1266799999999999999999999999999999 9999999998624999999999999888
Q ss_pred HHHHHhhhhh
Q 047062 231 IILALCYFWG 240 (253)
Q Consensus 231 ~~~~~~~~~~ 240 (253)
+.-++..|-.
T Consensus 152 R~~~i~~F~~ 161 (271)
T 1z5z_A 152 RDDIISKFQN 161 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 7777777753
No 6
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.36 E-value=9.9e-13 Score=133.00 Aligned_cols=197 Identities=7% Similarity=-0.096 Sum_probs=130.1
Q ss_pred Hhhcchh--hhcCCcccchhhhhhCHHHHHHHhhhhcCCCCCc--chhHHhhhHH-------------------------
Q 047062 11 LFSLPTS--REKLDGELCDASIAKQTTEYHNMPSLHESRGDVH--RKDDLMVDAI------------------------- 61 (253)
Q Consensus 11 ~~~~~~~--r~~~~~~LTGTPiQN~L~EL~sL~~Fl~P~~~~~--~~~~~~~~~~------------------------- 61 (253)
...+..+ ++..+|+|||||+||++.|+|++++|+.|+.+.+ .|........
T Consensus 296 ~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTT
T ss_pred HHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 4445555 5666899999999999999999999999975443 2222111000
Q ss_pred -----------------------hHHHHHHHHh-----hhhhhhccCCCC---CCceEEEEeecCCHHHHHHHHHHHHhc
Q 047062 62 -----------------------DNLGSLKEKT-----SKYVAYGGKLDS---SRFVEYWIPVQISNVQLEQYCGTLLSK 110 (253)
Q Consensus 62 -----------------------~~~~~L~~~l-----~pf~LRRtK~dv---P~K~e~vV~~~Ls~~Qr~lY~~~l~~~ 110 (253)
.....++.++ ..+++|+++..+ |++....+.+++++.++..|+......
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~ 455 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMG 455 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTT
T ss_pred HhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhh
Confidence 1111222222 356777777665 888889999999999999997543221
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHHcCCccCcchhhhhhhhhhhhHHHHhhhhhhcCcHHHHHHHHHHHHHcCCCeEEE
Q 047062 111 SLSLCSPLKNDPVGVLHDILISARKCCDHPYLVDKSLQSLLVKDLELAEYLDVGVKASGKLQLLDTMLSELKNQGSRVII 190 (253)
Q Consensus 111 ~~~l~~~~~~~~~~~ll~~L~~LRqiCnHP~L~~~~~~~~~~~~~~~~~~~~~li~~SgKl~~L~~lL~~l~~~g~KvLI 190 (253)
.. ... . ... ..|.+|..+...... ........+.|+..|.+++.+ ..+.|+||
T Consensus 456 ~~-----~~~-~-~~~--------~~~l~pe~~~~~l~~----------~~~~~~~~~~K~~~L~~ll~~--~~~~k~iV 508 (968)
T 3dmq_A 456 AR-----KSA-E-DRA--------RDMLYPERIYQEFEG----------DNATWWNFDPRVEWLMGYLTS--HRSQKVLV 508 (968)
T ss_dssp CC-----SSG-G-GGT--------HHHHCSGGGTTTTTS----------SSCCTTTTSHHHHHHHHHHHH--TSSSCCCE
T ss_pred hh-----hhh-H-HHH--------hhhcChHHHHHHhhh----------hhhcccCccHHHHHHHHHHHh--CCCCCEEE
Confidence 10 000 0 001 112234332221100 001126678999999999987 67899999
Q ss_pred EccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhhh
Q 047062 191 LFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFWG 240 (253)
Q Consensus 191 FSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~~ 240 (253)
|++++. +.+.++..|....|+.+.+++|.+....+.-.+..|..
T Consensus 509 F~~~~~------~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~ 552 (968)
T 3dmq_A 509 ICAKAA------TALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAE 552 (968)
T ss_dssp ECSSTH------HHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHS
T ss_pred EeCcHH------HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC
Confidence 999999 99999999995479999999999888777777766653
No 7
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.78 E-value=1.4e-08 Score=92.57 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=53.9
Q ss_pred hcCcHHHHHHHHHHHHH--cCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeec--------CCchHHHHHHH
Q 047062 166 KASGKLQLLDTMLSELK--NQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVS--------PTIVRCIILAL 235 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~--~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g--------~t~~r~~~~~~ 235 (253)
..++|+..|.++|.+.. ..++|+|||++++. +.+.++.+|.. .|+.+.+++| .+....+.-.+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~------~~~~l~~~L~~-~~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRE------TAKKIVNELVK-DGIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHH------HHHHHHHHHHH-TTCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHH------HHHHHHHHHHH-cCCCcEEEeccccccccccCCHHHHHHHH
Confidence 67899999999999987 67999999999999 99999999998 7999999999 55554444444
Q ss_pred hhh
Q 047062 236 CYF 238 (253)
Q Consensus 236 ~~~ 238 (253)
..|
T Consensus 413 ~~F 415 (494)
T 1wp9_A 413 DEF 415 (494)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.66 E-value=1.1e-05 Score=74.45 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=43.5
Q ss_pred hhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 165 VKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 165 i~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
...++|+..|.+++.+ ..|+|+|||++++. +.+.+...|.. . .+.|.+....+.-.+..|
T Consensus 331 ~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~------~~~~l~~~l~~----~--~~~g~~~~~~R~~~~~~F 390 (472)
T 2fwr_A 331 FNSKNKIRKLREILER--HRKDKIIIFTRHNE------LVYRISKVFLI----P--AITHRTSREEREEILEGF 390 (472)
T ss_dssp HSCSHHHHHHHHHHHH--TSSSCBCCBCSCHH------HHHHHHHHTTC----C--BCCSSSCSHHHHTHHHHH
T ss_pred hcChHHHHHHHHHHHh--CCCCcEEEEECCHH------HHHHHHHHhCc----c--eeeCCCCHHHHHHHHHHH
Confidence 5678999999999987 67899999999999 99988888752 2 344555444433344444
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.65 E-value=0.00013 Score=73.45 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHHHHHH--cCCCeEEEEccccccccchHHHHHHHHHHhcC---C--------CCCceeeecCCchHHHHH
Q 047062 167 ASGKLQLLDTMLSELK--NQGSRVIILFQILIIRAKVCENEILGYCISLG---P--------GVSPEVVVSPTIVRCIIL 233 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~--~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~---~--------g~~~~rl~g~t~~r~~~~ 233 (253)
.++|+..|.++|.+.. ..++|+|||++++. +.+.+..+|... . |+.+..+.|.+....+.-
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~------~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~ 684 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRA------LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKG 684 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH------HHHHHHHHHHHCSTTSSCCCEEC-------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH------HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHH
Confidence 5899999999999875 56899999999999 999999999862 1 444444455565555555
Q ss_pred HHhhh
Q 047062 234 ALCYF 238 (253)
Q Consensus 234 ~~~~~ 238 (253)
.+..|
T Consensus 685 il~~F 689 (936)
T 4a2w_A 685 VLDAF 689 (936)
T ss_dssp -----
T ss_pred HHHHh
Confidence 55544
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.45 E-value=0.00081 Score=66.38 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=37.4
Q ss_pred cCcHHHHHHHHHHHHH--cCCCeEEEEccccccccchHHHHHHHHHHhcC-----------CCCCceeeecCCchHHHHH
Q 047062 167 ASGKLQLLDTMLSELK--NQGSRVIILFQILIIRAKVCENEILGYCISLG-----------PGVSPEVVVSPTIVRCIIL 233 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~--~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~-----------~g~~~~rl~g~t~~r~~~~ 233 (253)
.++|+..|.++|.+.. ..++|+|||++++. +.+.+..+|... .|+.+.+++|.+....+.-
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~------~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~ 684 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRA------LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKG 684 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHH------HHHHHHHHHHTCSTTCSCCCEEC-------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHH------HHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHH
Confidence 5899999999998854 67899999999999 999999999753 3555556666676666666
Q ss_pred HHhhhh
Q 047062 234 ALCYFW 239 (253)
Q Consensus 234 ~~~~~~ 239 (253)
.+..|-
T Consensus 685 ~l~~F~ 690 (797)
T 4a2q_A 685 VLDAFK 690 (797)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 665554
No 11
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.32 E-value=0.0019 Score=60.03 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHHHHHH--cCCCeEEEEccccccccchHHHHHHHHHHhcC-----------CCCCceeeecCCchHHHHH
Q 047062 167 ASGKLQLLDTMLSELK--NQGSRVIILFQILIIRAKVCENEILGYCISLG-----------PGVSPEVVVSPTIVRCIIL 233 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~--~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~-----------~g~~~~rl~g~t~~r~~~~ 233 (253)
.++|+..|.++|.+.. ..++|+|||++++. +.+.+..+|... .|..+..++|.+....+.-
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~------~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~ 443 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRA------LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKG 443 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH------HHHHHHHHHTTCSGGGSCCEEC--------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHH------HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHH
Confidence 5899999999998876 77899999999999 999999999862 1444445555565555555
Q ss_pred HHhhh
Q 047062 234 ALCYF 238 (253)
Q Consensus 234 ~~~~~ 238 (253)
++..|
T Consensus 444 ~~~~F 448 (556)
T 4a2p_A 444 VLDAF 448 (556)
T ss_dssp -----
T ss_pred HHHHh
Confidence 55555
No 12
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.23 E-value=0.003 Score=58.48 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=38.1
Q ss_pred hcCcHHHHHHHHHHHHHc--CCCeEEEEccccccccchHHHHHHHHHHhcC-----------CCCCceeeecCCchHHHH
Q 047062 166 KASGKLQLLDTMLSELKN--QGSRVIILFQILIIRAKVCENEILGYCISLG-----------PGVSPEVVVSPTIVRCII 232 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~--~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~-----------~g~~~~rl~g~t~~r~~~ 232 (253)
..++|+..|.++|.+... .++|+|||++++. +.+.+..+|... .|..+.+++|.+....+.
T Consensus 368 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~------~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~ 441 (555)
T 3tbk_A 368 NENPKLRDLYLVLQEEYHLKPETKTILFVKTRA------LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQK 441 (555)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH------HHHHHHHHHHHCGGGTTCCEEECCC----------------
T ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH------HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHH
Confidence 358999999999998764 4589999999999 999999999852 144555555566666666
Q ss_pred HHHhhhh
Q 047062 233 LALCYFW 239 (253)
Q Consensus 233 ~~~~~~~ 239 (253)
-++..|-
T Consensus 442 ~~~~~F~ 448 (555)
T 3tbk_A 442 CVLEAFR 448 (555)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 5555554
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.51 E-value=0.012 Score=56.49 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=42.1
Q ss_pred cCcHHHHHHHHHHHHH--cCCCeEEEEccccccccchHHHHHHHHHHhcCCC----CCceeeec--------CCchHHHH
Q 047062 167 ASGKLQLLDTMLSELK--NQGSRVIILFQILIIRAKVCENEILGYCISLGPG----VSPEVVVS--------PTIVRCII 232 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~--~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g----~~~~rl~g--------~t~~r~~~ 232 (253)
.+.|+..|.+++.+.. ..+.++|||+++.. +.+.+...|.. .| +.+..+.| ......+.
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~------~~~~l~~~L~~-~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~ 450 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRA------LVDALKNWIEG-NPKLSFLKPGILTGRGKTNQNTGMTLPAQK 450 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHH------HHHHHHHHHHH-CTTCCSCCEEC-------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHH------HHHHHHHHHHh-CCCccccceeEEEccCCCccccCCCHHHHH
Confidence 6889999999998874 46789999999999 99999999987 66 88888854 55544454
Q ss_pred HHHhhh
Q 047062 233 LALCYF 238 (253)
Q Consensus 233 ~~~~~~ 238 (253)
-.+..|
T Consensus 451 ~v~~~F 456 (696)
T 2ykg_A 451 CILDAF 456 (696)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 445444
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.11 E-value=0.045 Score=50.54 Aligned_cols=63 Identities=6% Similarity=-0.054 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHHHcC-CCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 168 SGKLQLLDTMLSELKNQ-GSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~-g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
..|...+.+++.+...+ +.++|||++ +. ..+.+...|.. .|....+++|.+....+.-.+..|
T Consensus 330 ~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~------~~~~l~~~L~~-~~~~v~~~~g~~~~~~r~~i~~~f 393 (510)
T 2oca_A 330 SKRNKWIAKLAIKLAQKDENAFVMFKH-VS------HGKAIFDLIKN-EYDKVYYVSGEVDTETRNIMKTLA 393 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESS-HH------HHHHHHHHHHT-TCSSEEEESSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEec-HH------HHHHHHHHHHH-cCCCeEEEECCCCHHHHHHHHHHH
Confidence 34555566666665544 567788888 77 77779999987 677999999999876555444444
No 15
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.92 E-value=0.019 Score=45.53 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=56.1
Q ss_pred hhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 165 VKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 165 i~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
+..+.|+..|.+++... .+.|+|||+++.. ..+.+...|.. .|+....+.|......+.-++..|-
T Consensus 13 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~------~~~~l~~~L~~-~~~~~~~~hg~~~~~~r~~~~~~f~ 78 (172)
T 1t5i_A 13 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQ------RCIALAQLLVE-QNFPAIAIHRGMPQEERLSRYQQFK 78 (172)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSSEEEECSSHH------HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhC--CCCcEEEEECCHH------HHHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHH
Confidence 34477999999998765 5679999999999 99999999997 8999999999988887777777765
No 16
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.90 E-value=0.021 Score=44.70 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=55.5
Q ss_pred hhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 165 VKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 165 i~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
+..+.|+..|.+++.. ..+.|+|||+++.. ..+.+...|.. .|+....+.|......+.-.+..|-
T Consensus 17 ~~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~------~~~~l~~~L~~-~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 17 VREENKFSLLKDVLMT--ENPDSCIIFCRTKE------HVNQLTDELDD-LGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCGGGHHHHHHHHHHH--HCCSSEEEECSSHH------HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHh--cCCCcEEEEECCHH------HHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3457899999999876 36779999999999 99999999987 8999999999988777777776664
No 17
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.84 E-value=0.011 Score=47.71 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=48.3
Q ss_pred hhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 165 VKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 165 i~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
+..+.|+..|.++|.... .+.|+|||++... ..+.+...|.. .|+....+.|......+.-.+..|-
T Consensus 27 v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~------~~~~l~~~L~~-~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNATG-KDSLTLVFVETKK------GADSLEDFLYH-EGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CCGGGHHHHHHHHHHHC--CCSCEEEEESCHH------HHHHHHHHHHH-TTCCEEEEC--------CHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhcC-CCCeEEEEECCHH------HHHHHHHHHHH-cCCceEEEeCCCCHHHHHHHHHHHH
Confidence 445789999999998743 6789999999999 99999999997 8999999999776665555555553
No 18
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.43 E-value=0.038 Score=43.28 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 170 KLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 170 Kl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
|+..|.+++... .+.|+|||++... ..+.+...|.. .|+....+.|......+.-.+..|-
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~------~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~ 77 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRR------KVEELTTKLRN-DKFTVSAIYSDLPQQERDTIMKEFR 77 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHH------HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHH------HHHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHH
Confidence 999999998875 5789999999999 99999999987 8999999999887776666655553
No 19
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.16 E-value=0.044 Score=43.33 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 169 GKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 169 gKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
.|+..|.+++... .+.|+|||+++.. ..+.+...|.. .|+....+.|......+..++..|-
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~------~~~~l~~~L~~-~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRR------NAKWLTVEMIQ-DGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHH------HHHHHHHHHHT-TTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHH------HHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 4888888887654 5679999999999 99999999997 8999999999988877777776664
No 20
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.15 E-value=0.029 Score=45.44 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=52.5
Q ss_pred hhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 165 VKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 165 i~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
+..+.|+..|.++|.. .+.|+|||+++.. ..+.+...|.. .|+....+.|......+.-++..|-
T Consensus 37 ~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~------~~~~l~~~L~~-~g~~~~~lhg~~~~~~R~~~l~~F~ 101 (191)
T 2p6n_A 37 VKEEAKMVYLLECLQK---TPPPVLIFAEKKA------DVDAIHEYLLL-KGVEAVAIHGGKDQEERTKAIEAFR 101 (191)
T ss_dssp CCGGGHHHHHHHHHTT---SCSCEEEECSCHH------HHHHHHHHHHH-HTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHh---CCCCEEEEECCHH------HHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 3456788888777653 5679999999999 99999999987 7999999999988776666666664
No 21
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=93.44 E-value=0.17 Score=41.37 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=54.4
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
..+.|+..|.+++.. ..+.++|||++... ..+-+...|.. .|+....+.|......+.-.+..|.
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~------~~~~l~~~L~~-~~~~~~~lhg~~~~~~r~~~~~~f~ 78 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKA------ETEEIAQGLLR-LGHPAQALHGDLSQGERERVLGAFR 78 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHH------HHHHHHHHHHH-HTCCEEEECSSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHH------HHHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHH
Confidence 347899999999973 45779999999999 89999999987 7999999999988877777776664
No 22
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=91.45 E-value=0.026 Score=44.55 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHH
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCII 232 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~ 232 (253)
+.|+..|.+++.. ..+.|+|||+++.. ..+.+...|.. .|+....+.|......+.
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~------~~~~l~~~L~~-~~~~~~~~~g~~~~~~r~ 70 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRE------RVHELANWLRE-AGINNCYLEGEMVQGKRN 70 (170)
Confidence 6788888888875 45779999999999 99999999987 788888888876554333
No 23
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=90.85 E-value=0.63 Score=40.39 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=54.3
Q ss_pred hhcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 165 VKASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 165 i~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
...+.|+..|.+++.... +.++|||++... ..+.+...|.. .|+....+.|......+.-.+..|-
T Consensus 10 ~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~------~~~~l~~~L~~-~g~~~~~lhg~l~~~~r~~~~~~f~ 75 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVAS--PDRAMVFTRTKA------ETEEIAQGLLR-LGHPAQALHGDMSQGERERVMGAFR 75 (300)
T ss_dssp CCSSSHHHHHHHHHHHHC--CSSEEEECSSHH------HHHHHHHHHHT-TTCCEEEECSCCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEECCHH------HHHHHHHHHHh-CCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 345789999999987644 789999999999 89999999987 8999999999877776666666664
No 24
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=89.48 E-value=0.2 Score=48.08 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=48.2
Q ss_pred cCcHHHHHHHHHHHHHc--C-CCeEEEEccccccccchHHHHHHHHHHhcCC------CCCceeeecC--------CchH
Q 047062 167 ASGKLQLLDTMLSELKN--Q-GSRVIILFQILIIRAKVCENEILGYCISLGP------GVSPEVVVSP--------TIVR 229 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~--~-g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~------g~~~~rl~g~--------t~~r 229 (253)
.+.|+..|.++|.+... . +.|+|||+++.. +.+.+..+|.. . |+....+.|. ....
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~------~~~~l~~~L~~-~~~l~~~g~~~~~lhg~~~~~~~~~~~~~ 451 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQ------SAYALSQWITE-NEKFAEVGVKAHHLIGAGHSSEFKPMTQN 451 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHH------HHHHHHHHHHS-SCSCC-----CEECCCSCCCTTCCCCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHH------HHHHHHHHHHh-CccccccCcceEEEECCCCccCCCCCCHH
Confidence 46788888888877443 2 789999999999 99999999986 4 8999999998 6666
Q ss_pred HHHHHHhhhh
Q 047062 230 CIILALCYFW 239 (253)
Q Consensus 230 ~~~~~~~~~~ 239 (253)
.+.-.+-.|-
T Consensus 452 eR~~~~~~F~ 461 (699)
T 4gl2_A 452 EQKEVISKFR 461 (699)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 6666666663
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.78 E-value=1 Score=39.20 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=51.0
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
...|...+.+++... .+.|+|||++... ..+.+...|.. .|+....+.|.+....+.-.+..|
T Consensus 234 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~------~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQ------RCIALAQLLVE-QNFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSCHH------HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhc--CCCcEEEEeCcHH------HHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHH
Confidence 456788888887654 7789999999999 99999999987 899999999988766555555555
No 26
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=85.24 E-value=1.7 Score=38.10 Aligned_cols=64 Identities=23% Similarity=0.137 Sum_probs=51.2
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
..+.|+..+..++... .+.|+|||++... ..+.+...|.. .|+....+.|.+....+.-.+..|
T Consensus 241 ~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~------~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f 304 (400)
T 1s2m_A 241 EERQKLHCLNTLFSKL--QINQAIIFCNSTN------RVELLAKKITD-LGYSCYYSHARMKQQERNKVFHEF 304 (400)
T ss_dssp CGGGHHHHHHHHHHHS--CCSEEEEECSSHH------HHHHHHHHHHH-HTCCEEEECTTSCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhhc--CCCcEEEEEecHH------HHHHHHHHHHh-cCCCeEEecCCCCHHHHHHHHHHH
Confidence 3467888888888654 5679999999999 99999999987 799999999988776665555555
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.17 E-value=1.8 Score=38.07 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=51.1
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
...|...+.+++... ..+.++|||++... ..+-+...|.. .|+....+.|......+.-.+..|
T Consensus 259 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~------~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT-GKDSLTLVFVETKK------GADSLEDFLYH-EGYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp GGGHHHHHHHHHHTC-CTTCEEEEECSSHH------HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHhc-CCCCeEEEEECCHH------HHHHHHHHHHH-CCCCeeEecCCCCHHHHHHHHHHH
Confidence 466788887777653 46789999999999 99999999987 899999999988866665555555
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.92 E-value=1.7 Score=37.22 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=47.6
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
...|+..+.+++ ...+.++|||++... ..+.+...|.. .|+....+.|.+....+.-.+..|
T Consensus 223 ~~~~~~~l~~~l---~~~~~~~lvf~~~~~------~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 223 ENERFEALCRLL---KNKEFYGLVFCKTKR------DTKELASMLRD-IGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp GGGHHHHHHHHH---CSTTCCEEEECSSHH------HHHHHHHHHHH-TTCCEEEECSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---hcCCCcEEEEECCHH------HHHHHHHHHHh-cCCCeEEeeCCCCHHHHHHHHHHH
Confidence 345666655554 478889999999999 99999999987 799999999987766555544444
No 29
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.42 E-value=3.4 Score=36.24 Aligned_cols=62 Identities=10% Similarity=-0.015 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 169 GKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 169 gKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
.|+..+.+++... .+.|+|||++... ..+.+...|.. .|+....+.|......+.-.+..|-
T Consensus 262 ~k~~~l~~~~~~~--~~~~~lVf~~~~~------~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (410)
T 2j0s_A 262 WKFDTLCDLYDTL--TITQAVIFCNTKR------KVDWLTEKMRE-ANFTVSSMHGDMPQKERESIMKEFR 323 (410)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHH------HHHHHHHHHHH-TTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc--CCCcEEEEEcCHH------HHHHHHHHHHh-CCCceEEeeCCCCHHHHHHHHHHHH
Confidence 3888888887765 3459999999999 99999999987 8999999999988776666555553
No 30
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=79.88 E-value=3.5 Score=40.88 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=56.5
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
....|+..+.+.+.++...|..||||+.... .-+.+...|.. .|+....+-|.-..|-+......|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie------~se~Ls~~L~~-~gi~~~vLnak~~~rEa~iia~ag 487 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIE------KSELVSNELTK-AGIKHNVLNAKFHANEAAIVAQAG 487 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHH------HHHHHHHHHHH-TTCCCEECCTTCHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHH------HHHHHHHHHHH-CCCCEEEecCChhHHHHHHHHhcC
Confidence 3467999999999888889999999999999 99999999998 999999999998888775555444
No 31
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=78.76 E-value=3.1 Score=41.29 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=55.1
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
...|+..+...+.++...|..||||+.... .-+.+...|.. .|+....+-|.-..|-+......|
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~------~se~Ls~~L~~-~gi~~~vLhg~~~~rEr~ii~~ag 478 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVE------TSELISKLLKN-KGIPHQVLNAKNHEREAQIIEEAG 478 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHH------HHHHHHHHHHT-TTCCCEEECSSCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHH------HHHHHHHHHHH-CCCCEEEeeCCccHHHHHHHHHcC
Confidence 356888888888888788999999999999 99999999998 999999999998888775444433
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=78.74 E-value=3.9 Score=40.82 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=55.1
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
..|+..+...+.+....|..||||+.... .-+.+...|.. .|+....|-|....|-+......|
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie------~sE~Ls~~L~~-~Gi~~~vLnak~~~rEa~iia~ag 506 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVE------RSEYLSRQFTK-RRIPHNVLNAKYHEQEATIIAVAG 506 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHH------HHHHHHHHHHH-TTCCCEEECSSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHH------HHHHHHHHHHH-CCCCEEEecCChhHHHHHHHHhcC
Confidence 56898898888888889999999999999 99999999998 999999999998888765544443
No 33
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.60 E-value=4 Score=35.23 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
..|...+..++... .+.++|||++... ..+.+...|.. .|+....+.|......+.-.+..|
T Consensus 228 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~------~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f 289 (395)
T 3pey_A 228 ADKFDVLTELYGLM--TIGSSIIFVATKK------TANVLYGKLKS-EGHEVSILHGDLQTQERDRLIDDF 289 (395)
T ss_dssp HHHHHHHHHHHTTT--TSSEEEEECSCHH------HHHHHHHHHHH-TTCCCEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEeCCHH------HHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHHH
Confidence 34666665555433 5679999999999 99999999987 899999999988776666555555
No 34
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=77.43 E-value=3.7 Score=40.38 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
..|+..+...+.+....|.+||||+.... .-+.+...|.. .|+....+-|.-..|-+.+....|
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e------~sE~Ls~~L~~-~Gi~~~vLhgkq~~rE~~ii~~ag 520 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIE------KSELLSSMLKK-KGIPHQVLNAKYHEKEAEIVAKAG 520 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHH------HHHHHHHHHHT-TTCCCEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHH------HHHHHHHHHHH-CCCCEEEeeCCchHHHHHHHHhCC
Confidence 56888998988888888999999999999 99999999997 999999999987777665444444
No 35
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=77.36 E-value=1.7 Score=27.77 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=36.2
Q ss_pred hhhhhCHHHHHHHhhhhcCCCCCcchhHHhhhHHhHHHHHHHHhhhhhhhc
Q 047062 28 ASIAKQTTEYHNMPSLHESRGDVHRKDDLMVDAIDNLGSLKEKTSKYVAYG 78 (253)
Q Consensus 28 TPiQN~L~EL~sL~~Fl~P~~~~~~~~~~~~~~~~~~~~L~~~l~pf~LRR 78 (253)
|-++|++..|=.++.++-|+.+.+..-. ......++..+..|..||
T Consensus 6 TeVEnRl~qLE~ll~~lfP~~d~D~ll~-----~~~l~~ir~~L~~~~~~~ 51 (57)
T 1hbw_A 6 TEVESRLERLEQLFLLIFPREDLDMILK-----MDSLRDIEALLTGLFVQD 51 (57)
T ss_dssp HHHHHHHHHHHHHCSSSSSSSCCCHHHH-----HHSSHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHCCcccHHHHHc-----CCChHHHHHHHHHHHHHh
Confidence 6799999999999999999876554332 234577888888888877
No 36
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=75.58 E-value=4.1 Score=35.62 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
..|+..+..++... .+.++|||++... ..+.+...|.. .|+....+.|......+.-.+..|
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~------~~~~l~~~l~~-~~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRR------KVDWLTEKMHA-RDFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHH------HHHHHHHHHHT-TTCCCEEC---CHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHH------HHHHHHHHHHh-cCCeEEEecCCCCHHHHHHHHHHH
Confidence 34777777777544 5679999999999 99999999987 899999999988876666655555
No 37
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.07 E-value=5.8 Score=35.59 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=49.9
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
...|...|.+++.+ .+.++|||++... ..+.+...|.. .|+....+.|......+.-++..|-
T Consensus 285 ~~~k~~~l~~~l~~---~~~~~lVF~~t~~------~a~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~F~ 347 (434)
T 2db3_A 285 KYAKRSKLIEILSE---QADGTIVFVETKR------GADFLASFLSE-KEFPTTSIHGDRLQSQREQALRDFK 347 (434)
T ss_dssp GGGHHHHHHHHHHH---CCTTEEEECSSHH------HHHHHHHHHHH-TTCCEEEESTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---CCCCEEEEEeCcH------HHHHHHHHHHh-CCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 35566666666544 4556999999999 99999999997 8999999999988877777776664
No 38
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.66 E-value=9 Score=33.26 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
..|+..+..++... .+.++|||++... ..+.+...|.. .|+....+.|......+.-.+..|-
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~------~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~ 313 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRK------TASWLAAELSK-EGHQVALLSGEMMVEQRAAVIERFR 313 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHH------HHHHHHHHHHH-TTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHH------HHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHHHHHH
Confidence 34666666666543 5679999999999 99999999987 7999999999887776666666553
No 39
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=72.82 E-value=11 Score=35.80 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCch
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIV 228 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~ 228 (253)
+||-.++..++..+...|.+|||-++.-. ..|-+-.-|.. .|....|+..+..+
T Consensus 216 TGKT~ti~~~I~~l~~~~~~ILv~a~TN~------AvD~i~erL~~-~~~~ilRlG~~~r~ 269 (646)
T 4b3f_X 216 TGKTTTVVEIILQAVKQGLKVLCCAPSNI------AVDNLVERLAL-CKQRILRLGHPARL 269 (646)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESSHH------HHHHHHHHHHH-TTCCEEECSCCSSC
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEcCchH------HHHHHHHHHHh-cCCceEEecchhhh
Confidence 89999999999999999999999999988 66644444444 58888888666543
No 40
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=71.15 E-value=11 Score=36.04 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCY 237 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~ 237 (253)
.+++..|...+......|.+||||+.... .-+-+..+|.. .|+...-+.|......+.-.+..
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~------~ae~L~~~L~~-~gi~~~~lh~~~~~~~R~~~l~~ 490 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKK------MSEDLTDYLKE-IGIKVNYLHSEIKTLERIEIIRD 490 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHH------HHHHHHHHHHH-TTCCEEEECTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHH------HHHHHHHHHHh-cCCCeEEEeCCCCHHHHHHHHHH
Confidence 45666666666677778999999999999 88888899987 78887777777654444444333
No 41
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.94 E-value=11 Score=36.17 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHH
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILAL 235 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~ 235 (253)
.+++..|...+......|.+||||+.... +-+-+..+|.. .|+...-+.|......+.-.+
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~------~ae~L~~~L~~-~gi~~~~lh~~~~~~~R~~~~ 482 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVR------MAEELTSFLVE-HGIRARYLHHELDAFKRQALI 482 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHH------HHHHHHHHHHH-TTCCEEEECTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHH------HHHHHHHHHHh-cCCCceeecCCCCHHHHHHHH
Confidence 46777666667777778999999999999 88888888987 788777676765544443333
No 42
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=56.49 E-value=25 Score=32.64 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHH--cCCCeEEEEccccccccchHHHHHHHHHHhcC--CCCCceeeecCCchHHHHHHHhhh
Q 047062 170 KLQLLDTMLSELK--NQGSRVIILFQILIIRAKVCENEILGYCISLG--PGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 170 Kl~~L~~lL~~l~--~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~--~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
+...+..+...+. ..+.++|||+.... ..+.+...|... .|+....+.|......+.-.+..|
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~iVF~~t~~------~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F 337 (579)
T 3sqw_A 271 IFAAVEHIKKQIKERDSNYKAIIFAPTVK------FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 337 (579)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECSSHH------HHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEECCcHH------HHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHh
Confidence 3455555555555 45789999999999 888888888752 388888898887766655555554
No 43
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=53.60 E-value=30 Score=31.71 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=44.0
Q ss_pred HHHHHHHHHHH--cCCCeEEEEccccccccchHHHHHHHHHHhcC--CCCCceeeecCCchHHHHHHHhhh
Q 047062 172 QLLDTMLSELK--NQGSRVIILFQILIIRAKVCENEILGYCISLG--PGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 172 ~~L~~lL~~l~--~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~--~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
..+..+...+. ..+.++|||+.... .-+.+...|... .|+....+.|......+.-.+..|
T Consensus 324 ~~~~~l~~~~~~~~~~~~~iVF~~s~~------~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 324 AAVEHIKKQIKERDSNYKAIIFAPTVK------FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSCHH------HHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCcEEEEcCcHH------HHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Confidence 34444544444 56889999999999 888888888752 388888898887776665555555
No 44
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=53.17 E-value=35 Score=31.41 Aligned_cols=63 Identities=16% Similarity=0.006 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
..|+..+.+.+.+ ..|.++|||+.... ..+-+...|.. .|+....+-|......+.-....|-
T Consensus 221 ~~~~~~l~~~l~~--~~~~~~IVf~~sr~------~~e~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 221 FKPLDQLMRYVQE--QRGKSGIIYCNSRA------KVEDTAARLQS-KGISAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp SSHHHHHHHHHHH--TTTCCEEEECSSHH------HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--cCCCcEEEEeCCHH------HHHHHHHHHHH-CCCCEEEecCCCCHHHHHHHHHHHH
Confidence 4556655555543 36789999999999 88999999987 7999888988887765555555543
No 45
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=51.80 E-value=3.1 Score=36.12 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCch
Q 047062 169 GKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIV 228 (253)
Q Consensus 169 gKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~ 228 (253)
.|...+..++... .+.|+|||++... ..+.+...|.. .|+....+.|.+..
T Consensus 245 ~~~~~l~~~~~~~--~~~~~lVf~~~~~------~~~~l~~~L~~-~~~~~~~~~~~~~~ 295 (394)
T 1fuu_A 245 YKYECLTDLYDSI--SVTQAVIFCNTRR------KVEELTTKLRN-DKFTVSAIYSDLPQ 295 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred hHHHHHHHHHhcC--CCCcEEEEECCHH------HHHHHHHHHHH-cCCeEEEeeCCCCH
Confidence 3666666666543 4679999999999 88988888887 78888788776543
No 46
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=46.45 E-value=57 Score=30.62 Aligned_cols=63 Identities=8% Similarity=0.052 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHc--CCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhh
Q 047062 169 GKLQLLDTMLSELKN--QGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYF 238 (253)
Q Consensus 169 gKl~~L~~lL~~l~~--~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~ 238 (253)
.+...+..++..+.. .+.++|||+.... .-+-+...|.. .|+....+.|......+.-.+..|
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~------~~e~la~~L~~-~g~~~~~~h~~l~~~~R~~~~~~F 313 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQK------DSEQVTVSLQN-LGIHAGAYHANLEPEDKTTVHRKW 313 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHH------HHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHH------HHHHHHHHHHH-CCCCEEEecCCCCHHHHHHHHHHH
Confidence 345556666665543 6889999999999 88888899987 799988888888766555555444
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=45.28 E-value=24 Score=32.78 Aligned_cols=44 Identities=9% Similarity=-0.103 Sum_probs=32.4
Q ss_pred cCCCeEEEEccccccccchHHHHHHHHHHhcCCCC--------CceeeecCCch-HHHHH
Q 047062 183 NQGSRVIILFQILIIRAKVCENEILGYCISLGPGV--------SPEVVVSPTIV-RCIIL 233 (253)
Q Consensus 183 ~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~--------~~~rl~g~t~~-r~~~~ 233 (253)
..+.|+|||++... ..+.+...|.. .+. ...++.|.+.. |..++
T Consensus 437 ~~~~k~lVF~~~~~------~a~~l~~~L~~-~~~~~~~~~~~~~~~i~g~~~~~r~~~l 489 (590)
T 3h1t_A 437 DRFAKTIVFCVDQE------HADEMRRALNN-LNSDLSRKHPDYVARVTSEEGKIGKGHL 489 (590)
T ss_dssp CTTSEEEEEESSHH------HHHHHHHHHHH-HTHHHHTTCTTSEEECSSTTHHHHHHHH
T ss_pred CCCccEEEEECCHH------HHHHHHHHHHH-hhhhhhccCCCeEEEEeCCChHHHHHHH
Confidence 45789999999999 99988888864 332 24578888876 54443
No 48
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=40.12 E-value=35 Score=26.14 Aligned_cols=52 Identities=19% Similarity=0.113 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHh-cC-CCCCceeeecC
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCIS-LG-PGVSPEVVVSP 225 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~-~~-~g~~~~rl~g~ 225 (253)
..+..+..+|+.+....|.||+|.+.-.. .++-|...|= .. ..|-+.-+.|.
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~------~a~~LD~~LW~~~~~sFlPH~~~~~ 75 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEK------QAYRLDEALWARPAESFVPHNLAGE 75 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHH------HHHHHHHHTTTSSTTCCCCEEETTC
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHH------HHHHHHHHHhCCCCCcccCCccCCC
Confidence 45788999999999999999999999988 8888888873 21 55555555443
No 49
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=38.06 E-value=26 Score=30.68 Aligned_cols=48 Identities=15% Similarity=-0.049 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCce-eeecC
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPE-VVVSP 225 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~-rl~g~ 225 (253)
..|...|.+++.+ .+.++|||++... .-+-+...|.. .|+... .+.|.
T Consensus 238 ~~~~~~l~~~l~~---~~~~~lVF~~~~~------~~~~l~~~L~~-~~~~~~~~~h~~ 286 (414)
T 3oiy_A 238 SRSKEKLVELLEI---FRDGILIFAQTEE------EGKELYEYLKR-FKFNVGETWSEF 286 (414)
T ss_dssp SCCHHHHHHHHHH---HCSSEEEEESSHH------HHHHHHHHHHH-TTCCEEESSSCH
T ss_pred cCHHHHHHHHHHH---cCCCEEEEECCHH------HHHHHHHHHHH-cCCceehhhcCc
Confidence 4577777777776 4689999999999 88999999987 788877 66663
No 50
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=35.77 E-value=18 Score=33.17 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchH
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVR 229 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r 229 (253)
..|...+..++... .+.++|||++... ..+.+...|.. .|+....+.|.....
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~------~a~~l~~~L~~-~~~~v~~~hg~~~~~ 394 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKD------TAEEIARRMTA-DGHTVACLTGNLEGA 394 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTT------TTTHHHHHHTT-TTCCCCEEC-----C
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHH------HHHHHHHHHHh-CCCcEEEEeCCCCHH
Confidence 44666666665443 5679999999999 88888888886 788888887766543
No 51
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=35.20 E-value=31 Score=27.41 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=24.6
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEc
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILF 192 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFS 192 (253)
..|||-..+..++.....+|.||+||.
T Consensus 17 mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 17 MYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 359999999999999999999999995
No 52
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=34.53 E-value=32 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=25.2
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEccc
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQI 194 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~ 194 (253)
.|||-..|..++......|.||+||...
T Consensus 38 gsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 5999999999999999999999999643
No 53
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.90 E-value=1.2e+02 Score=20.80 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHHHHcCCCeEEEEcc------ccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhhhc-ccc
Q 047062 177 MLSELKNQGSRVIILFQ------ILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFWGW-HIP 244 (253)
Q Consensus 177 lL~~l~~~g~KvLIFSq------~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~~~-~~~ 244 (253)
.+.++.. .++|+||+. |=. .=.-+..+|.. .|+.|..+|-.... ...-.+....|| .+|
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~------~C~~~~~~L~~-~~i~~~~vdi~~~~-~~~~~l~~~~g~~~vP 74 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCG------FSKQILEILNS-TGVEYETFDILEDE-EVRQGLKAYSNWPTYP 74 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTT------HHHHHHHHHHH-HTCCCEEEEGGGCH-HHHHHHHHHHTCCSSC
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCc------cHHHHHHHHHH-CCCCeEEEECCCCH-HHHHHHHHHHCCCCCC
Confidence 3444444 347999985 334 44556667776 68888888765442 233334555676 344
No 54
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=31.84 E-value=71 Score=24.52 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHH
Q 047062 170 KLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILAL 235 (253)
Q Consensus 170 Kl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~ 235 (253)
-.+.+.+++.++.+.|-.||+-..-.. |+..++|.. .|+...|-......+-+.-++
T Consensus 57 E~~~l~~~v~kI~~~g~nVVl~~k~I~--------d~a~~~l~k-~gI~~v~~v~~~dleria~at 113 (159)
T 1ass_A 57 ETNTFKQMVEKIKKSGANVVLCQKGID--------DVAQHYLAK-EGIYAVRRVKKSDMEKLAKAT 113 (159)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEESSCBC--------HHHHHHHHH-TTCEEECSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhCCCeEEEECCccC--------HHHHHHHHH-CCCEEEccCCHHHHHHHHHHh
Confidence 346678889999999999877777777 999999987 899888877766666554444
No 55
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=31.76 E-value=30 Score=30.10 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHh---cCCCCCceeeecCCc
Q 047062 173 LLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCIS---LGPGVSPEVVVSPTI 227 (253)
Q Consensus 173 ~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~---~~~g~~~~rl~g~t~ 227 (253)
-..+++..++++|.+|.|.|-... ++++.+.+ .+.|+..+++-|++.
T Consensus 147 ~~~~l~~~l~~~G~~v~ivSas~~--------~~v~~~a~~~~~~ygIp~e~ViG~~~ 196 (327)
T 4as2_A 147 GQRELYNKLMENGIEVYVISAAHE--------ELVRMVAADPRYGYNAKPENVIGVTT 196 (327)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEH--------HHHHHHHTCGGGSCCCCGGGEEEECE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcH--------HHHHHHHhhcccccCCCHHHeEeeee
Confidence 346788999999999999999887 66666554 346888888877653
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=31.06 E-value=9.4 Score=35.60 Aligned_cols=25 Identities=0% Similarity=0.003 Sum_probs=20.4
Q ss_pred hhcCCcccchhhhhhCHHHHHHHhh
Q 047062 18 REKLDGELCDASIAKQTTEYHNMPS 42 (253)
Q Consensus 18 r~~~~~~LTGTPiQN~L~EL~sL~~ 42 (253)
.....++|||||..|...+++.++.
T Consensus 330 ~~~~~l~lTATP~~~~~~~~~~~f~ 354 (590)
T 3h1t_A 330 EPAFQIGMTATPLREDNRDTYRYFG 354 (590)
T ss_dssp TTSEEEEEESSCSCTTTHHHHHHSC
T ss_pred CcceEEEeccccccccchhHHHHcC
Confidence 3455788999999999988888774
No 57
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=30.86 E-value=86 Score=22.19 Aligned_cols=50 Identities=4% Similarity=-0.039 Sum_probs=32.1
Q ss_pred CCeEEEEcc------ccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhhhcc
Q 047062 185 GSRVIILFQ------ILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFWGWH 242 (253)
Q Consensus 185 g~KvLIFSq------~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~~~~ 242 (253)
.++|+|||. +=. .=.-...+|+. .|+.|.-+|-... ....-.+..+.||.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp------~C~~ak~~L~~-~gi~y~~~di~~d-~~~~~~l~~~~g~~ 70 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCG------FSKQMVEILHK-HNIQFSSFDIFSD-EEVRQGLKAYSSWP 70 (111)
T ss_dssp SSSEEEEESBCSSSBSSH------HHHHHHHHHHH-TTCCCEEEEGGGC-HHHHHHHHHHHTCC
T ss_pred cCCEEEEEecCCCCCcch------hHHHHHHHHHH-cCCCeEEEECcCC-HHHHHHHHHHHCCC
Confidence 679999996 222 33456667776 7888888876543 23334555666774
No 58
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=29.16 E-value=1e+02 Score=21.57 Aligned_cols=56 Identities=11% Similarity=-0.010 Sum_probs=32.0
Q ss_pred CCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhhhcc
Q 047062 185 GSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFWGWH 242 (253)
Q Consensus 185 g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~~~~ 242 (253)
.++|+|||..+.....=..=.-...+|.. .|+.|.-+|-... ....-.+..+.||.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~-~gi~~~~~dI~~~-~~~~~~l~~~~g~~ 72 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKN-LNVPFEDVNILEN-EMLRQGLKEYSNWP 72 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHH-TTCCCEEEEGGGC-HHHHHHHHHHHTCS
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHH-cCCCcEEEECCCC-HHHHHHHHHHHCCC
Confidence 56899999853100000044566777776 7888888765432 23333455566764
No 59
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=28.20 E-value=94 Score=24.25 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHH
Q 047062 170 KLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILA 234 (253)
Q Consensus 170 Kl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~ 234 (253)
-.+.+.++++++.+.|-.||+-..-.. |+..++|.. .|+...|-......+-+.-+
T Consensus 63 E~~~l~~~v~kI~~~g~nVVl~~k~I~--------d~a~~~l~k-~gI~~vr~v~~~dleria~a 118 (178)
T 1gml_A 63 EEEYIHQLCEDIIQLKPDVVITEKGIS--------DLAQHYLMR-ANVTAIRRVRKTDNNRIARA 118 (178)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBC--------HHHHHHHHH-TTCEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcEEEECCccc--------HHHHHHHHH-CCCEEEecCCHHHHHHHHHH
Confidence 345678889999999999877777766 999999997 89988877665555544433
No 60
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=27.64 E-value=52 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=24.9
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccc
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQI 194 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~ 194 (253)
..|||-.++..++......|.+|++|+..
T Consensus 12 ~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 12 MYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 35999999999999999899999998544
No 61
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=27.38 E-value=70 Score=27.16 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=36.0
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCc
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSP 219 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~ 219 (253)
..+||-.++..+......+|.+|++||-=-+ .-++.+.++....|+..
T Consensus 77 pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s------~~~l~~R~~~~~~~i~~ 124 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDNDDVVNLHSLEMG------KKENIKRLIVTAGSINA 124 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCEEEEEESSSC------HHHHHHHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEECCCC------HHHHHHHHHHHHcCCCH
Confidence 3499999999999888888899999996666 56677766653245543
No 62
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=26.88 E-value=49 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.5
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEcccc
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQIL 195 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~~ 195 (253)
.|||-..+..++..+...|.||++|+...
T Consensus 22 GsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 22 FAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 49999999999999999999999995444
No 63
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=26.42 E-value=55 Score=27.13 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=26.1
Q ss_pred cCcHHHHHHHHHHHHHcCCCeEEEEccccc
Q 047062 167 ASGKLQLLDTMLSELKNQGSRVIILFQILI 196 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~ 196 (253)
.|||-..|...+......|.||+||.....
T Consensus 29 gsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 29 FSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 499999999999999999999999975444
No 64
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=26.05 E-value=1.1e+02 Score=28.68 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=41.4
Q ss_pred cCcHHHHHHHHHHHHHc-CCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecC
Q 047062 167 ASGKLQLLDTMLSELKN-QGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSP 225 (253)
Q Consensus 167 ~SgKl~~L~~lL~~l~~-~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~ 225 (253)
.+||-.++..++..+.. .+.+|||.+..-. ..|-+...+.. .|....|+.++
T Consensus 205 GTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~------A~~~l~~~l~~-~~~~~~R~~~~ 257 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQGNGPVLVCAPSNI------AVDQLTEKIHQ-TGLKVVRLCAK 257 (624)
T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEESSHH------HHHHHHHHHHT-TTCCEEECCCT
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeCcHH------HHHHHHHHHHh-cCCeEEeeccc
Confidence 48999999999988876 7889999999888 77766666654 68888887654
No 65
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=25.51 E-value=1.7e+02 Score=20.90 Aligned_cols=50 Identities=10% Similarity=-0.040 Sum_probs=31.1
Q ss_pred CCeEEEEccc------cccccchHHHHHHHHHHhcCCCCC---ceeeecCCchHHHHHHHhhhhhcc
Q 047062 185 GSRVIILFQI------LIIRAKVCENEILGYCISLGPGVS---PEVVVSPTIVRCIILALCYFWGWH 242 (253)
Q Consensus 185 g~KvLIFSq~------~~~~~~~~~Ldile~~l~~~~g~~---~~rl~g~t~~r~~~~~~~~~~~~~ 242 (253)
.++|+|||.. =. .=.-...+|.. .|+. |.-+|-... ....-.+..+.||.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp------~C~~ak~lL~~-~gv~~~~~~~~dv~~~-~~~~~~l~~~sg~~ 73 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCG------FSRATIGLLGN-QGVDPAKFAAYNVLED-PELREGIKEFSEWP 73 (121)
T ss_dssp SCSEEEEESBCSSSBCTT------HHHHHHHHHHH-HTBCGGGEEEEECTTC-HHHHHHHHHHHTCC
T ss_pred cCCEEEEEeccCCCCCCc------cHHHHHHHHHH-cCCCcceEEEEEecCC-HHHHHHHHHHhCCC
Confidence 5789999995 33 34455666665 6777 666665433 33444566667874
No 66
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=23.72 E-value=1.6e+02 Score=20.24 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=32.2
Q ss_pred CCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCchHHHHHHHhhhhhcc-cc
Q 047062 185 GSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIVRCIILALCYFWGWH-IP 244 (253)
Q Consensus 185 g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~r~~~~~~~~~~~~~-~~ 244 (253)
.++|+||+.-+.....=..=.-...+|+. .|+.|..+|-.... ...-.+....||. +|
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~-~~i~~~~vdi~~~~-~~~~~l~~~~g~~~vP 72 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNS-TGVEYETFDILEDE-EVRQGLKTFSNWPTYP 72 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHH-TCSCEEEEESSSCH-HHHHHHHHHHSCCSSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHH-cCCCeEEEECCCCH-HHHHHHHHHhCCCCCC
Confidence 56799998821100000023455666776 78999988876642 3333445555754 44
No 67
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=23.69 E-value=1.4e+02 Score=23.28 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=33.9
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCC
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVS 218 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~ 218 (253)
..|||-.++..++......|.+|++|+.-.. .-++.+.... .|+.
T Consensus 32 ~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~------~~~~~~~~~~--~g~~ 76 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKMGEPGIYVALEEH------PVQVRQNMAQ--FGWD 76 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESSSC------HHHHHHHHHT--TTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEEccCC------HHHHHHHHHH--cCCC
Confidence 3499999999998888888999999997766 5556555533 4554
No 68
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=23.24 E-value=62 Score=29.20 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=36.8
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCcee
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEV 221 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~r 221 (253)
-.+||-.+...+......+|.+|++||-=-+ .-++.+.++....|+...+
T Consensus 206 pG~GKTtlal~ia~~~a~~g~~vl~fSlEms------~~ql~~R~~~~~~~i~~~~ 255 (444)
T 3bgw_A 206 PSMGKTAFALKQAKNMSDNDDVVNLHSLEMG------KKENIKRLIVTAGSINAQK 255 (444)
T ss_dssp SSSSHHHHHHHHHHHHHHTTCEEEEECSSSC------TTHHHHHHHHHHSCCCHHH
T ss_pred CCCChHHHHHHHHHHHHHcCCEEEEEECCCC------HHHHHHHHHHHHcCCCHHH
Confidence 3599999999999888777999999997665 5566666665334555444
No 69
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=23.16 E-value=65 Score=25.84 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=25.4
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccc
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQI 194 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~ 194 (253)
..|||-..|.+.+.....+|.||++|+.-
T Consensus 29 MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 29 MFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45999999999999999999999999754
No 70
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine phosphatase, WPD-loop, sulfamic acid, inhibitor, drug design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A 2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A* 2i4h_A* 2i5x_A* 2ahs_A
Probab=22.90 E-value=28 Score=29.63 Aligned_cols=23 Identities=4% Similarity=0.128 Sum_probs=20.0
Q ss_pred cCCcccchhhhhhCHHHHHHHhh
Q 047062 20 KLDGELCDASIAKQTTEYHNMPS 42 (253)
Q Consensus 20 ~~~~~LTGTPiQN~L~EL~sL~~ 42 (253)
..+.+.|-.|+.|.+.|+|.|+-
T Consensus 90 ~~~yIatQgPl~~T~~dFW~MVw 112 (291)
T 2hc1_A 90 RREYIVTQGPLPGTKDDFWKMVW 112 (291)
T ss_dssp SCSEEEECCCCTTTHHHHHHHHH
T ss_pred cccEEEECCCChhHHHHHHHHHH
Confidence 34678999999999999999975
No 71
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=22.40 E-value=1.6e+02 Score=21.13 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=32.3
Q ss_pred CCeEEEEccccccccchHHHHHHHHHHhcCCCCC-ceeeecCCchHHHHHHHhhhhhcc
Q 047062 185 GSRVIILFQILIIRAKVCENEILGYCISLGPGVS-PEVVVSPTIVRCIILALCYFWGWH 242 (253)
Q Consensus 185 g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~-~~rl~g~t~~r~~~~~~~~~~~~~ 242 (253)
.++|+|||..|.....=..=.-...+|+. .|+. |.-+|-... ....-.+..+.||.
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~-~gv~~~~~vdV~~d-~~~~~~l~~~tg~~ 75 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRL-HGVRDYAAYNVLDD-PELRQGIKDYSNWP 75 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHH-TTCCCCEEEESSSC-HHHHHHHHHHHTCC
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHH-cCCCCCEEEEcCCC-HHHHHHHHHHhCCC
Confidence 46899999953100000044566677776 7885 888776543 23333556666774
No 72
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase, phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Probab=22.34 E-value=27 Score=28.92 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=20.5
Q ss_pred hcCCcccchhhhhhCHHHHHHHhh
Q 047062 19 EKLDGELCDASIAKQTTEYHNMPS 42 (253)
Q Consensus 19 ~~~~~~LTGTPiQN~L~EL~sL~~ 42 (253)
.+.+.+.|-.|+.|.+.|+|.|+-
T Consensus 50 ~~~~yIatQ~Pl~~T~~dFW~MVw 73 (253)
T 1p15_A 50 QKDSYIASQGPLLHTIEDFWRMIW 73 (253)
T ss_dssp CTTCEEEECCCCSSSHHHHHHHHH
T ss_pred CcceEEEeCCCChHHHHHHhHhhe
Confidence 345678999999999999999975
No 73
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=22.28 E-value=1.4e+02 Score=22.49 Aligned_cols=42 Identities=12% Similarity=-0.099 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCeEEEEcccc-ccccchHHHHHHHHHHhcCCCCCceee
Q 047062 174 LDTMLSELKNQGSRVIILFQIL-IIRAKVCENEILGYCISLGPGVSPEVV 222 (253)
Q Consensus 174 L~~lL~~l~~~g~KvLIFSq~~-~~~~~~~~Ldile~~l~~~~g~~~~rl 222 (253)
..+.|.+++++|++++|.|.=. . .+.-+..++.. .|+.|.-+
T Consensus 29 ~~~al~~l~~~G~~iii~TgR~~~------~~~~~~~~l~~-~gi~~~~I 71 (142)
T 2obb_A 29 AVETLKLLQQEKHRLILWSVREGE------LLDEAIEWCRA-RGLEFYAA 71 (142)
T ss_dssp HHHHHHHHHHTTCEEEECCSCCHH------HHHHHHHHHHT-TTCCCSEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcc------cHHHHHHHHHH-cCCCeEEE
Confidence 3467788899999999998643 3 45556666776 67766444
No 74
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=22.12 E-value=49 Score=20.63 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.3
Q ss_pred ecCCHHHHHHHHHHH
Q 047062 93 VQISNVQLEQYCGTL 107 (253)
Q Consensus 93 ~~Ls~~Qr~lY~~~l 107 (253)
+-||+.|+++|+..-
T Consensus 15 ~fmT~~Qkk~y~amk 29 (53)
T 1byy_A 15 IFMTEEQKKYYNAMK 29 (53)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 468999999998644
No 75
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=21.53 E-value=96 Score=22.75 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=32.4
Q ss_pred cCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCC
Q 047062 183 NQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPT 226 (253)
Q Consensus 183 ~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t 226 (253)
..|.|+.|....+.-++ -..-++++.+... ||.-.|+||..
T Consensus 17 ~egtri~iLAPvv~~rK-g~~~~ll~~l~~~--Gf~RvrvDGe~ 57 (119)
T 3fpn_A 17 PERTKMQILAPIVSGKK-GTHAKTLEDIRKQ--GYVRVRIDREM 57 (119)
T ss_dssp CTTCEEEEEEEEEEEEC-SCCHHHHHHHHHT--TCCEEEETTEE
T ss_pred CCCCEEEEEEEEeeCCC-CcHHHHHHHHHhC--CCeEEEECCEE
Confidence 56889999999987433 3467888888885 99999999953
No 76
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=21.52 E-value=1.4e+02 Score=30.39 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcC-CCCCceeeecCCchHHHHHHHhhhh
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLG-PGVSPEVVVSPTIVRCIILALCYFW 239 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~-~g~~~~rl~g~t~~r~~~~~~~~~~ 239 (253)
..+..+...++.++ .+|.+|+||++.+. ..+-+...|... +|+....+.|......+.-.+..|.
T Consensus 796 ~~~~~i~~~il~~l-~~g~qvlvf~~~v~------~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~ 861 (1151)
T 2eyq_A 796 YDSMVVREAILREI-LRGGQVYYLYNDVE------NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 861 (1151)
T ss_dssp CCHHHHHHHHHHHH-TTTCEEEEECCCSS------CHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hcCCeEEEEECCHH------HHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 34555566666654 46889999999999 788888888752 4888889999988777666666664
No 77
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=21.40 E-value=76 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=25.2
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccc
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILI 196 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~ 196 (253)
..|||-..|...+......|.||+||..-..
T Consensus 37 M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 37 MFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 4599999888889999999999999966544
No 78
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=20.90 E-value=82 Score=24.47 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.7
Q ss_pred hhcCcHHHHHHHHHHHHHcCCCeEEEEccc
Q 047062 165 VKASGKLQLLDTMLSELKNQGSRVIILFQI 194 (253)
Q Consensus 165 i~~SgKl~~L~~lL~~l~~~g~KvLIFSq~ 194 (253)
...|||-.++..++..+..+|.||-++..-
T Consensus 12 ~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 345999999999999999999999888754
No 79
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=20.79 E-value=21 Score=32.09 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceeeecCCch
Q 047062 168 SGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVVVSPTIV 228 (253)
Q Consensus 168 SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl~g~t~~ 228 (253)
..|...|..++... .+.++|||++... ..+.+...|.. .|+....+.|....
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~------~~~~l~~~L~~-~~~~v~~lh~~~~~ 369 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRK------TASWLAAELSK-EGHQVALLSGEMMV 369 (479)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHH------HHHHHHHHHHh-CCccEEEecCCCCH
Confidence 34555555555433 4568999999999 88888888876 66666666665443
No 80
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=20.64 E-value=84 Score=27.35 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=39.1
Q ss_pred hcCcHHHHHHHHHHHHHcCCCeEEEEccccccccchHHHHHHHHHHhcCCCCCceee
Q 047062 166 KASGKLQLLDTMLSELKNQGSRVIILFQILIIRAKVCENEILGYCISLGPGVSPEVV 222 (253)
Q Consensus 166 ~~SgKl~~L~~lL~~l~~~g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~~~~rl 222 (253)
..+||-.++..+...+...|.+|++||-=-+ .-++....+....|+...++
T Consensus 55 pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms------~~ql~~Rlls~~~~v~~~~l 105 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALNDDRGVAVFSLEMS------AEQLALRALSDLTSINMHDL 105 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCEEEEEESSSC------HHHHHHHHHHHHHCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC------HHHHHHHHHHHhhCCCHHHH
Confidence 3489999999999888779999999998777 67777777654345555444
No 81
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=20.24 E-value=2.1e+02 Score=20.75 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=29.3
Q ss_pred CCeEEEEccccccccchHHHHHHHHHHhcCCCC-CceeeecCCchHHHHHHHhhhhhcc
Q 047062 185 GSRVIILFQILIIRAKVCENEILGYCISLGPGV-SPEVVVSPTIVRCIILALCYFWGWH 242 (253)
Q Consensus 185 g~KvLIFSq~~~~~~~~~~Ldile~~l~~~~g~-~~~rl~g~t~~r~~~~~~~~~~~~~ 242 (253)
.++|+|||.-+.---.=.+=.-...+|.. .|+ .|.-+|-.... -+.-+++.+.||.
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~-~gv~~~~~~~v~~~~-~~r~~l~~~sg~~ 75 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRL-HGVRDYAAYNVLDDP-ELRQGIKDYSNWP 75 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHH-TTCCSCEEEETTSCH-HHHHHHHHHHTCC
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHH-hCCcCeEeecccCCH-HHHHHHHHhccCC
Confidence 47899998754100000022334445554 566 36555443322 3445677888995
Done!