BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047067
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 21/141 (14%)
Query: 268 LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL---------LDEGQGY 318
L C++ G +R +++ RNG+ +Q + +L CS A L G
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 319 FALMKKHGVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMP---IEPTAAVWG-ALLGACR 374
F M V P EA + +++M I+P +G AL G CR
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Query: 375 MHKNVELGAYAAERIFELDPH 395
A++ +E+D H
Sbjct: 153 KGD--------ADKAYEVDAH 165
>pdb|2YYG|A Chain A, Crystal Structure Of The Oxygenase Component (Hpab) Of 4-
Hydroxyphenylacetate 3-Monooxygenase
pdb|2YYI|A Chain A, Crystal Structure Of The Oxygenase Component (Hpab) Of 4-
Hydroxyphenylacetate 3-Monooxygenase Complexed With Fad
pdb|2YYJ|A Chain A, Crystal Structure Of The Oxygenase Component (Hpab) Of 4-
Hydroxyphenylacetate 3-Monooxygenase Complexed With Fad
And 4- Hydroxyphenylacetate
Length = 481
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 495 LQVHSEKLALAFALISTPPGSTIH-IKKNIRVCGDCHSAFKFASKVVEREIIV 546
LQ SEK ALAFAL ++ PG +H + + V GD +S+V E + +V
Sbjct: 200 LQAGSEKYALAFALPTSTPG--LHFVCREALVGGDSPFDHPLSSRVEEMDCLV 250
>pdb|2YYK|A Chain A, Crystal Structure Of The Mutant Of Hpab (T198i, A276g, And
R466h)
pdb|2YYL|A Chain A, Crystal Structure Of The Mutant Of Hpab (t198i, A276g, And
R466h) Complexed With Fad
pdb|2YYM|A Chain A, Crystal Structure Of The Mutant Of Hpab (T198i, A276g, And
R466h) Complexed With Fad And 4-Hydroxyphenylacetate
Length = 481
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 495 LQVHSEKLALAFALISTPPGSTIH-IKKNIRVCGDCHSAFKFASKVVEREIIV 546
LQ SEK ALAFAL ++ PG +H + + V GD +S+V E + +V
Sbjct: 200 LQAGSEKYALAFALPTSTPG--LHFVCREALVGGDSPFDHPLSSRVEEMDCLV 250
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 156 ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGK 215
ES + ++ + G R+ G+ +E+L + + H +YS F AS S K
Sbjct: 14 ESLGQGTFTKIFKG-VRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMS----K 68
Query: 216 WVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
H H++ + G V N LV + K GS++
Sbjct: 69 LSHKHLVLNYGVCVCGDENILVQEFVKFGSLD 100
>pdb|1YVP|A Chain A, Ro Autoantigen Complexed With Rnas
pdb|1YVP|B Chain B, Ro Autoantigen Complexed With Rnas
pdb|1YVR|A Chain A, Ro Autoantigen
pdb|2I91|A Chain A, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
pdb|2I91|B Chain B, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
Length = 538
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 444 HMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQER 491
H+ AN+ + K W+E+ E K+ P++ VL Y + ER
Sbjct: 187 HIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATER 234
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 156 ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGK 215
ES + ++ + G R+ G+ +E+L + + H +YS F AS S K
Sbjct: 14 ESLGQGTFTKIFKG-VRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMS----K 68
Query: 216 WVHAHVIKSGGQLVAFVG--NTLVDMYAKSGSIE 247
H H++ + G V F G N LV + K GS++
Sbjct: 69 LSHKHLVLNYG--VCFCGDENILVQEFVKFGSLD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,814,580
Number of Sequences: 62578
Number of extensions: 671544
Number of successful extensions: 1598
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1594
Number of HSP's gapped (non-prelim): 12
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)