BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047067
(566 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/566 (69%), Positives = 465/566 (82%), Gaps = 1/566 (0%)
Query: 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
KCT K L + RIVHAHIL S F++DI M NT+LN YAKCG L+EARK+F++MP +D VT
Sbjct: 69 KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVT 128
Query: 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
WT LISGYSQ+D+P +A++ F+QMLR G PN+FTLSSV+KA+ A G Q+H FC
Sbjct: 129 WTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA-ERRGCCGHQLHGFC 187
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
+K G+D NV+VGS+LLD+Y R+ MDDA +F ALES+N+VSWNALIAGHAR+S EKAL
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
F MLR+GF P+HFSY+S+F A +STG LEQGKWVHA++IKSG +LVAF GNTL+DMY
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307
Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
AKSGSI DA K+F+RL KRDVVSWNS+LT AQHG GK V WFE+M R GI PN+++FL
Sbjct: 308 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFL 367
Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
VLTACSH+GLLDEG Y+ LMKK G+ PE HYVT VDLLGRAG L+RAL+FI EMPIE
Sbjct: 368 SVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIE 427
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
PTAA+W ALL ACRMHKN ELGAYAAE +FELDP D GPH++L NIYAS GR NDAAR R
Sbjct: 428 PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVR 487
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
K MKESGVKKEPACSWVE +NA+HMFVAND+ HPQR I +KW E+ KIK++GYVPD+S
Sbjct: 488 KKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTS 547
Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
HV+ + DQQERE LQ HSEK+ALAFAL++TPPGSTIHIKKNIRVCGDCH+A K ASKVV
Sbjct: 548 HVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVV 607
Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
REIIVRDTNRFHHF+DG CSC DYW
Sbjct: 608 GREIIVRDTNRFHHFKDGNCSCKDYW 633
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/573 (42%), Positives = 367/573 (64%), Gaps = 14/573 (2%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + L++ + VHAH++ + + ++ +L Y KC CL++ARK+ DEMP K++V+W
Sbjct: 62 CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVL----KASGAGATDDKFGRQVH 117
TA+IS YSQ A+ +F++M+R KPN+FT ++VL +ASG G G+Q+H
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLG-----LGKQIH 176
Query: 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE 177
+K+ YD +++VGSSLLDMYA+ Q+ +A +F L ++ VS A+IAG+A+ E
Sbjct: 177 GLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE 236
Query: 178 KALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237
+AL F + EG P + +Y+S+ TAL+ L+ GK H HV++ A + N+L+
Sbjct: 237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLI 296
Query: 238 DMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG--IAPN 295
DMY+K G++ A ++F+ + +R +SWN+ML G ++HGLG+ + F +++R+ + P+
Sbjct: 297 DMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF-RLMRDEKRVKPD 355
Query: 296 QVTFLCVLTACSHAGLLDEGQGYFALM--KKHGVEPEEAHYVTFVDLLGRAGLLDRALKF 353
VT L VL+ CSH + D G F M ++G +P HY VD+LGRAG +D A +F
Sbjct: 356 AVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEF 415
Query: 354 IREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL 413
I+ MP +PTA V G+LLGACR+H +V++G R+ E++P ++G +++L+N+YASAGR
Sbjct: 416 IKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRW 475
Query: 414 NDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQI 473
D R MM + V KEP SW++ + +H F AND HP+R + K +EIS K+KQ
Sbjct: 476 ADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQA 535
Query: 474 GYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAF 533
GYVPD S VL D++++E L HSEKLAL F LI+T G I + KN+R+C DCH+
Sbjct: 536 GYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFA 595
Query: 534 KFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
K SKV ERE+ +RD NRFH DG CSCGDYW
Sbjct: 596 KIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%)
Query: 185 EMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG 244
EM G E Y ++ A +L G+ VHAH+IK+ ++ L+ Y K
Sbjct: 42 EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 101
Query: 245 SIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304
+EDA KV + + +++VVSW +M++ +Q G + F +M+R+ PN+ TF VLT
Sbjct: 102 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLT 161
Query: 305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP 358
+C A L G+ L+ K + + +D+ +AG + A + +P
Sbjct: 162 SCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/569 (42%), Positives = 367/569 (64%), Gaps = 9/569 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP-VKDMVT 60
C +LK+L+ +H ++ F D ++ ++ AY+KC + +A +LF E+ V ++V+
Sbjct: 305 CANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVS 364
Query: 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
WTA+ISG+ QND E A+ LFS+M R G++PN+FT S +L A + +VHA
Sbjct: 365 WTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPS-----EVHAQV 419
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
+K Y+ + VG++LLD Y + ++++A +F+ ++ K+ V+W+A++AG+A+ E E A+
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALAST-GSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
+ F E+ + G +P F++SS+ A+T S+ QGK H IKS V + L+ M
Sbjct: 480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 539
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
YAK G+IE AE+VF R ++D+VSWNSM++G AQHG + F++M + + + VTF
Sbjct: 540 YAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTF 599
Query: 300 LCVLTACSHAGLLDEGQGYFALMKKH-GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP 358
+ V AC+HAGL++EG+ YF +M + + P + H VDL RAG L++A+K I MP
Sbjct: 600 IGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659
Query: 359 IEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR 418
+ +W +L ACR+HK ELG AAE+I + P DS ++LL+N+YA +G + A+
Sbjct: 660 NPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAK 719
Query: 419 ARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPD 478
RK+M E VKKEP SW+E KN + F+A D +HP + I+ K ++S ++K +GY PD
Sbjct: 720 VRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779
Query: 479 SSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASK 538
+S+VL D + +EA L HSE+LA+AF LI+TP GS + I KN+RVCGDCH K +K
Sbjct: 780 TSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAK 839
Query: 539 VVEREIIVRDTNRFHHF-RDGFCSCGDYW 566
+ EREI+VRD+NRFHHF DG CSCGD+W
Sbjct: 840 IEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 174/328 (53%), Gaps = 1/328 (0%)
Query: 43 LDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA 102
L A LFD+ P +D ++ +L+ G+S++ + + A LF + RLG++ + SSVLK
Sbjct: 43 LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102
Query: 103 SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVS 162
S A D+ FGRQ+H C+K+G+ +V VG+SL+D Y + D +F ++ +N V+
Sbjct: 103 S-ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161
Query: 163 WNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVI 222
W LI+G+AR S ++ L F M EG +P F++++ LA G +G VH V+
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221
Query: 223 KSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVR 282
K+G V N+L+++Y K G++ A +F++ + VV+WNSM++G A +GL +
Sbjct: 222 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 281
Query: 283 WFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG 342
F M N + ++ +F V+ C++ L + + K+G ++ +
Sbjct: 282 MFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYS 341
Query: 343 RAGLLDRALKFIREMPIEPTAAVWGALL 370
+ + AL+ +E+ W A++
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMI 369
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 157/299 (52%), Gaps = 8/299 (2%)
Query: 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQ 70
R +H + F +D+++ ++++ Y K + RK+FDEM +++VTWT LISGY++
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171
Query: 71 NDQPENAIILFSQMLRLGLKPNQFTLSS---VLKASGAGATDDKFGRQVHAFCLKYGYDW 127
N + + LF +M G +PN FT ++ VL G G G QVH +K G D
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR----GLQVHTVVVKNGLDK 227
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
+ V +SL+++Y + + A LF E K+ V+WN++I+G+A +AL F M
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 287
Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
+ S++SV A+ L + +H V+K G + L+ Y+K ++
Sbjct: 288 LNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAML 347
Query: 248 DAEKVFNRL-LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305
DA ++F + +VVSW +M++G Q+ + V F +M R G+ PN+ T+ +LTA
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/602 (41%), Positives = 366/602 (60%), Gaps = 38/602 (6%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKC--------------------- 40
CT + L+ VH I+ D+ N ++N YAK
Sbjct: 115 CTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTS 174
Query: 41 ----------GCL-----DEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQML 85
C+ D R++F+ MP KD+V++ +I+GY+Q+ E+A+ + +M
Sbjct: 175 NSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMG 234
Query: 86 RLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQM 145
LKP+ FTLSSVL + D G+++H + ++ G D +VY+GSSL+DMYA+ ++
Sbjct: 235 TTDLKPDSFTLSSVLPIF-SEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARI 293
Query: 146 DDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205
+D+ +F+ L ++ +SWN+L+AG+ + +ALR F +M+ +P ++SSV A
Sbjct: 294 EDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353
Query: 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWN 265
A +L GK +H +V++ G F+ + LVDMY+K G+I+ A K+F+R+ D VSW
Sbjct: 354 AHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWT 413
Query: 266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKK- 324
+++ G A HG G V FE+M R G+ PNQV F+ VLTACSH GL+DE GYF M K
Sbjct: 414 AIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV 473
Query: 325 HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAY 384
+G+ E HY DLLGRAG L+ A FI +M +EPT +VW LL +C +HKN+EL
Sbjct: 474 YGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEK 533
Query: 385 AAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVH 444
AE+IF +D + G ++L+ N+YAS GR + A+ R M++ G++K+PACSW+E KN H
Sbjct: 534 VAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593
Query: 445 MFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLAL 504
FV+ D +HP I++ + + E++++ GYV D+S VL D++ + L HSE+LA+
Sbjct: 594 GFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAV 653
Query: 505 AFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGD 564
AF +I+T PG+TI + KNIR+C DCH A KF SK+ EREIIVRD +RFHHF G CSCGD
Sbjct: 654 AFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGD 713
Query: 565 YW 566
YW
Sbjct: 714 YW 715
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 191/410 (46%), Gaps = 39/410 (9%)
Query: 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWT 62
T +K +A+ +HA + + + + + +++ Y L EA LF + ++ W
Sbjct: 16 TRIKSKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLLFKTLKSPPVLAWK 74
Query: 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLK 122
++I ++ A+ F +M G P+ SVLK S D +FG VH F ++
Sbjct: 75 SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLK-SCTMMMDLRFGESVHGFIVR 133
Query: 123 YGYDWNVYVGSSLLDMYAR-------------FDQM-----------------------D 146
G D ++Y G++L++MYA+ FD+M D
Sbjct: 134 LGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGID 193
Query: 147 DAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA 206
+F + K+ VS+N +IAG+A+ E ALR EM +P F+ SSV +
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS 253
Query: 207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNS 266
+ +GK +H +VI+ G ++G++LVDMYAKS IED+E+VF+RL RD +SWNS
Sbjct: 254 EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNS 313
Query: 267 MLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHG 326
++ G Q+G +R F +M+ + P V F V+ AC+H L G+ + + G
Sbjct: 314 LVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 373
Query: 327 VEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH 376
VD+ + G + A K M + + W A++ +H
Sbjct: 374 FGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALH 422
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/563 (42%), Positives = 349/563 (61%), Gaps = 3/563 (0%)
Query: 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTAL 64
L+ + + +H + + S F + + + +++ YAKCG L+ AR+LFD M +++V+W ++
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308
Query: 65 ISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYG 124
I Y QN+ P+ A+++F +ML G+KP ++ L A A D + GR +H ++ G
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC-ADLGDLERGRFIHKLSVELG 367
Query: 125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFS 184
D NV V +SL+ MY + ++D A +F L+S+ VSWNA+I G A+ AL FS
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427
Query: 185 EMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG 244
+M +P F+Y SV TA+A KW+H V++S FV LVDMYAK G
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487
Query: 245 SIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304
+I A +F+ + +R V +WN+M+ G HG GKA + FE+M + I PN VTFL V++
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547
Query: 305 ACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTA 363
ACSH+GL++ G F +MK+ + +E HY VDLLGRAG L+ A FI +MP++P
Sbjct: 548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607
Query: 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423
V+GA+LGAC++HKNV AAER+FEL+P D G H+LLANIY +A + R M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSM 667
Query: 424 KESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVL 483
G++K P CS VE KN VH F + AHP I+ ++ IK+ GYVPD++ VL
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL 727
Query: 484 SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVERE 543
+ +E L HSEKLA++F L++T G+TIH++KN+RVC DCH+A K+ S V RE
Sbjct: 728 G-VENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786
Query: 544 IIVRDTNRFHHFRDGFCSCGDYW 566
I+VRD RFHHF++G CSCGDYW
Sbjct: 787 IVVRDMQRFHHFKNGACSCGDYW 809
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 197/374 (52%), Gaps = 13/374 (3%)
Query: 1 KCTHLKKLKEARIVHAHILGSAFKNDIA----MQNTILNAYAKCGCLDEARKLFDEMPVK 56
+C+ LK+L++ IL FKN + Q +++ + + G +DEA ++F+ + K
Sbjct: 46 RCSSLKELRQ-------ILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSK 98
Query: 57 DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQV 116
V + ++ G+++ + A+ F +M ++P + + +LK G A + + G+++
Sbjct: 99 LNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEA-ELRVGKEI 157
Query: 117 HAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEG 176
H +K G+ +++ + L +MYA+ Q+++A +F + ++ VSWN ++AG+++
Sbjct: 158 HGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMA 217
Query: 177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
AL M E +P+ + SV A+++ + GK +H + ++SG + + L
Sbjct: 218 RMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTAL 277
Query: 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
VDMYAK GS+E A ++F+ +L+R+VVSWNSM+ Q+ K + F+KML G+ P
Sbjct: 278 VDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTD 337
Query: 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356
V+ + L AC+ G L+ G+ L + G++ + + + + + +D A +
Sbjct: 338 VSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK 397
Query: 357 MPIEPTAAVWGALL 370
+ T W A++
Sbjct: 398 LQ-SRTLVSWNAMI 410
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 147/290 (50%), Gaps = 7/290 (2%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L L+ R +H + ++++ N++++ Y KC +D A +F ++ + +V+W
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
A+I G++QN +P +A+ FSQM +KP+ FT SV+ A A + + +H +
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAI-AELSITHHAKWIHGVVM 465
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
+ D NV+V ++L+DMYA+ + A +F + ++ +WNA+I G+ G+ AL
Sbjct: 466 RSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALE 525
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQG-KWVHAHVIKSGGQLVAFVGNTLVDMY 240
F EM + +P ++ SV +A + +G +E G K + +L +VD+
Sbjct: 526 LFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLL 585
Query: 241 AKSGSIEDA-EKVFNRLLKRDVVSWNSMLTGCAQHG----LGKATVRWFE 285
++G + +A + + +K V + +ML C H KA R FE
Sbjct: 586 GRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFE 635
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 1/168 (0%)
Query: 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSW 264
L SL++ + + V K+G F LV ++ + GS+++A +VF + + V +
Sbjct: 44 LERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLY 103
Query: 265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKK 324
++ML G A+ +++F +M + + P F +L C L G+ L+ K
Sbjct: 104 HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163
Query: 325 HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
G + ++ + ++ A K MP E W ++
Sbjct: 164 SGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP-ERDLVSWNTIVAG 210
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/567 (41%), Positives = 356/567 (62%), Gaps = 3/567 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPV--KDMV 59
C+ L L+ R VHA + F D+ +QN ++ YAKC L AR +F+ +P+ + +V
Sbjct: 129 CSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188
Query: 60 TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAF 119
+WTA++S Y+QN +P A+ +FSQM ++ +KP+ L SVL A D K GR +HA
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC-LQDLKQGRSIHAS 247
Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
+K G + + SL MYA+ Q+ A LF ++S N + WNA+I+G+A+ +A
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
+ F EM+ + P S +S +A A GSLEQ + ++ +V +S + F+ + L+DM
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
+AK GS+E A VF+R L RDVV W++M+ G HG + + + M R G+ PN VTF
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTF 427
Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
L +L AC+H+G++ EG +F M H + P++ HY +DLLGRAG LD+A + I+ MP+
Sbjct: 428 LGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV 487
Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
+P VWGALL AC+ H++VELG YAA+++F +DP ++G ++ L+N+YA+A + A
Sbjct: 488 QPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEV 547
Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
R MKE G+ K+ CSWVE + + F D +HP+ I ++ I ++K+ G+V +
Sbjct: 548 RVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANK 607
Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
L + +E E L HSE++A+A+ LISTP G+ + I KN+R C +CH+A K SK+
Sbjct: 608 DASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKL 667
Query: 540 VEREIIVRDTNRFHHFRDGFCSCGDYW 566
V+REI+VRDTNRFHHF+DG CSCGDYW
Sbjct: 668 VDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 203/376 (53%), Gaps = 7/376 (1%)
Query: 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWT 62
TH +LK+ +HA +L + + +++A + G + AR++FD++P + W
Sbjct: 32 THKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWN 88
Query: 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLK 122
A+I GYS+N+ ++A++++S M + P+ FT +LKA +G + + GR VHA +
Sbjct: 89 AIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKAC-SGLSHLQMGRFVHAQVFR 147
Query: 123 YGYDWNVYVGSSLLDMYARFDQMDDAWFLFTA--LESKNEVSWNALIAGHARKSEGEKAL 180
G+D +V+V + L+ +YA+ ++ A +F L + VSW A+++ +A+ E +AL
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
FS+M + +P + SV A L+QG+ +HA V+K G ++ + +L MY
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
AK G + A+ +F+++ +++ WN+M++G A++G + + F +M+ + P+ ++
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
++AC+ G L++ + + + + + +D+ + G ++ A + + + ++
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA-RLVFDRTLD 386
Query: 361 PTAAVWGALLGACRMH 376
VW A++ +H
Sbjct: 387 RDVVVWSAMIVGYGLH 402
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 13/320 (4%)
Query: 114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARK 173
+Q+HA L G ++ ++ + L+ + F + A +F L WNA+I G++R
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 174 SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG 233
+ + AL +S M P F++ + A + L+ G++VHA V + G FV
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 234 NTLVDMYAKSGSIEDAEKVFN--RLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG 291
N L+ +YAK + A VF L +R +VSW ++++ AQ+G + F +M +
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 292 IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL 351
+ P+ V + VL A + L +G+ A + K G+E E ++ + + G + A
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERI---FELDPHDSGPH-ILLANIY 407
+M P +W A++ KN YA E I E+ D P I + +
Sbjct: 278 ILFDKMK-SPNLILWNAMISG--YAKN----GYAREAIDMFHEMINKDVRPDTISITSAI 330
Query: 408 ASAGRLNDAARARKMMKESG 427
++ ++ +AR M + G
Sbjct: 331 SACAQVGSLEQARSMYEYVG 350
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/566 (40%), Positives = 357/566 (63%), Gaps = 7/566 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + + E ++ H+ + + + + N ++N Y K L++A +LFD+MP +++++W
Sbjct: 71 CISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISW 130
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
T +IS YS+ + A+ L MLR ++PN +T SSVL+ S G +D R +H +
Sbjct: 131 TTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLR-SCNGMSD---VRMLHCGII 186
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K G + +V+V S+L+D++A+ + +DA +F + + + + WN++I G A+ S + AL
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F M R GF + +SV A LE G H H++K L+ + N LVDMY
Sbjct: 247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLI--LNNALVDMYC 304
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K GS+EDA +VFN++ +RDV++W++M++G AQ+G + ++ FE+M +G PN +T +
Sbjct: 305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364
Query: 302 VLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
VL ACSHAGLL++G YF MKK +G++P HY +DLLG+AG LD A+K + EM E
Sbjct: 365 VLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECE 424
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
P A W LLGACR+ +N+ L YAA+++ LDP D+G + LL+NIYA++ + + R
Sbjct: 425 PDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIR 484
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
M++ G+KKEP CSW+E +H F+ D++HPQ + KK ++ ++ IGYVP+++
Sbjct: 485 TRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETN 544
Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
VL + ++ E L+ HSEKLALAF L++ P I I+KN+R+CGDCH K ASK+
Sbjct: 545 FVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLE 604
Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
R I++RD R+HHF+DG CSCGDYW
Sbjct: 605 IRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 125/286 (43%), Gaps = 40/286 (13%)
Query: 178 KALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237
+A++ + G +YS + S ++ +G + H+ +G + + F+ N L+
Sbjct: 44 RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLI 103
Query: 238 DMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV 297
+MY K + DA ++F+++ +R+V+SW +M++ ++ + + + MLR+ + PN
Sbjct: 104 NMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY 163
Query: 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357
T+ VL +C+ G+ D + ++K+ G+E + +D+ + G + AL EM
Sbjct: 164 TYSSVLRSCN--GMSDVRMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220
Query: 358 PIEPTAAVWGALLG-----------------------------------ACRMHKNVELG 382
+ A VW +++G AC +ELG
Sbjct: 221 -VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 383 AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428
A I + D D + L ++Y G L DA R MKE V
Sbjct: 280 MQAHVHIVKYD-QDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/571 (41%), Positives = 357/571 (62%), Gaps = 6/571 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C H L +A VH HIL + D + ++ Y+ G +D ARK+FD+ + + W
Sbjct: 87 CGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVW 146
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKF---GRQVHA 118
AL + E + L+ +M R+G++ ++FT + VLKA A G+++HA
Sbjct: 147 NALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHA 206
Query: 119 FCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEK 178
+ GY +VY+ ++L+DMYARF +D A ++F + +N VSW+A+IA +A+ + +
Sbjct: 207 HLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFE 266
Query: 179 ALRTFSEMLREGFE--PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
ALRTF EM+RE + P + SV A AS +LEQGK +H ++++ G + V + L
Sbjct: 267 ALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISAL 326
Query: 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
V MY + G +E ++VF+R+ RDVVSWNS+++ HG GK ++ FE+ML NG +P
Sbjct: 327 VTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386
Query: 297 VTFLCVLTACSHAGLLDEGQGYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIR 355
VTF+ VL ACSH GL++EG+ F M + HG++P+ HY VDLLGRA LD A K ++
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415
+M EP VWG+LLG+CR+H NVEL A+ R+F L+P ++G ++LLA+IYA A ++
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506
Query: 416 AARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY 475
R +K+++ G++K P W+E + ++ FV+ D+ +P IH +++E +K+ GY
Sbjct: 507 VKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGY 566
Query: 476 VPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKF 535
+P + VL + +E+E + HSEKLALAF LI+T G I I KN+R+C DCH KF
Sbjct: 567 IPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKF 626
Query: 536 ASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
SK +E+EI+VRD NRFH F++G CSCGDYW
Sbjct: 627 ISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 10/245 (4%)
Query: 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHA 219
++S N LI ++ + ++A+R S+ P+ +Y + SL VH
Sbjct: 46 KISNNQLIQSLCKEGKLKQAIRVLSQ----ESSPSQQTYELLILCCGHRSSLSDALRVHR 101
Query: 220 HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKA 279
H++ +G F+ L+ MY+ GS++ A KVF++ KR + WN++ G G+
Sbjct: 102 HILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEE 161
Query: 280 TVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL----LDEGQGYFALMKKHGVEPEEAHYV 335
+ + KM R G+ ++ T+ VL AC + L +G+ A + + G
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMT 221
Query: 336 TFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH 395
T VD+ R G +D A MP+ + W A++ AC A R +
Sbjct: 222 TLVDMYARFGCVDYASYVFGGMPVRNVVS-WSAMI-ACYAKNGKAFEALRTFREMMRETK 279
Query: 396 DSGPH 400
DS P+
Sbjct: 280 DSSPN 284
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 474 bits (1220), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/560 (41%), Positives = 356/560 (63%), Gaps = 3/560 (0%)
Query: 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISG 67
L ++ VH H + +D + +++AY++ C+ EA LF+ D+V W A+++G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAG 491
Query: 68 YSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDW 127
Y+Q+ + LF+ M + G + + FTL++V K G ++ G+QVHA+ +K GYD
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQ-GKQVHAYAIKSGYDL 550
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
+++V S +LDMY + M A F F ++ ++V+W +I+G E E+A FS+M
Sbjct: 551 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR 610
Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
G P F+ +++ A + +LEQG+ +HA+ +K FVG +LVDMYAK GSI+
Sbjct: 611 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSID 670
Query: 248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
DA +F R+ ++ +WN+ML G AQHG GK T++ F++M GI P++VTF+ VL+ACS
Sbjct: 671 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730
Query: 308 HAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVW 366
H+GL+ E + M +G++PE HY D LGRAGL+ +A I M +E +A+++
Sbjct: 731 HSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMY 790
Query: 367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426
LL ACR+ + E G A ++ EL+P DS ++LL+N+YA+A + ++ AR MMK
Sbjct: 791 RTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 850
Query: 427 GVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYA 486
VKK+P SW+E KN +H+FV +D ++ Q +I++K +++ IKQ GYVP++ L
Sbjct: 851 KVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDV 910
Query: 487 DQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIV 546
+++E+E L HSEKLA+AF L+STPP + I + KN+RVCGDCH+A K+ +KV REI++
Sbjct: 911 EEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970
Query: 547 RDTNRFHHFRDGFCSCGDYW 566
RD NRFH F+DG CSCGDYW
Sbjct: 971 RDANRFHRFKDGICSCGDYW 990
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 191/363 (52%), Gaps = 2/363 (0%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
VH L + + N+++N Y K AR +FD M +D+++W ++I+G +QN
Sbjct: 337 VHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGL 396
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
A+ LF Q+LR GLKP+Q+T++SVLKA+ + +QVH +K + +V +
Sbjct: 397 EVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVST 456
Query: 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193
+L+D Y+R M +A LF + + V+WNA++AG+ + +G K L+ F+ M ++G
Sbjct: 457 ALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERS 515
Query: 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF 253
F+ ++VF ++ QGK VHA+ IKSG L +V + ++DMY K G + A+ F
Sbjct: 516 DDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAF 575
Query: 254 NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313
+ + D V+W +M++GC ++G + F +M G+ P++ T + A S L+
Sbjct: 576 DSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALE 635
Query: 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGAC 373
+G+ A K + + VD+ + G +D A + + + A W A+L
Sbjct: 636 QGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA-WNAMLVGL 694
Query: 374 RMH 376
H
Sbjct: 695 AQH 697
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 176/333 (52%), Gaps = 8/333 (2%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L + + + VHA+ + S + D+ + + IL+ Y KCG + A+ FD +PV D V W
Sbjct: 527 CGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAW 586
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
T +ISG +N + E A +FSQM +G+ P++FT++++ KAS ++ GRQ+HA L
Sbjct: 587 TTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQ-GRQIHANAL 645
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K + +VG+SL+DMYA+ +DDA+ LF +E N +WNA++ G A+ EG++ L+
Sbjct: 646 KLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQ 705
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG--NTLVDM 239
F +M G +P ++ V +A + +G + + + H + + + + L D
Sbjct: 706 LFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEA-YKHMRSMHGDYGIKPEIEHYSCLADA 764
Query: 240 YAKSGSIEDAEKVFNRL-LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQV 297
++G ++ AE + + ++ + ++L C G + R K+L + P +
Sbjct: 765 LGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLE--LEPLDSS 822
Query: 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE 330
++ + + A DE + +MK H V+ +
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKD 855
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 153/324 (47%), Gaps = 4/324 (1%)
Query: 51 DEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD 110
D V +++ +S Y + Q + F+ M+ ++ +Q T +L A+
Sbjct: 273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML-ATAVKVDSL 331
Query: 111 KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGH 170
G+QVH LK G D + V +SL++MY + + A +F + ++ +SWN++IAG
Sbjct: 332 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGI 391
Query: 171 ARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS-LEQGKWVHAHVIKSGGQLV 229
A+ +A+ F ++LR G +P ++ +SV A +S L K VH H IK
Sbjct: 392 AQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSD 451
Query: 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289
+FV L+D Y+++ +++AE +F R D+V+WN+M+ G Q G T++ F M +
Sbjct: 452 SFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHK 510
Query: 290 NGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR 349
G + T V C +++G+ A K G + + +D+ + G +
Sbjct: 511 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA 570
Query: 350 ALKFIREMPIEPTAAVWGALLGAC 373
A +P+ P W ++ C
Sbjct: 571 AQFAFDSIPV-PDDVAWTTMISGC 593
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 33/306 (10%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C H + + H + D + ++N Y K G + E + LF+EMP +D+V W
Sbjct: 155 CLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLW 214
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
++ Y + E AI L S GL PN+ TL + + SG DD QV +F
Sbjct: 215 NLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISG----DDSDAGQVKSFA- 269
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
N SS+ ++ R N ++ + + L+
Sbjct: 270 ------NGNDASSVSEIIFR----------------------NKGLSEYLHSGQYSALLK 301
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F++M+ E ++ + SL G+ VH +K G L+ V N+L++MY
Sbjct: 302 CFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYC 361
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K A VF+ + +RD++SWNS++ G AQ+GL V F ++LR G+ P+Q T
Sbjct: 362 KLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTS 421
Query: 302 VLTACS 307
VL A S
Sbjct: 422 VLKAAS 427
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 143/329 (43%), Gaps = 44/329 (13%)
Query: 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISG 67
L + HA IL + + N +++ Y+KCG L AR++FD+MP +D+V+W ++++
Sbjct: 55 LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 68 YSQN-----DQPENAIILFSQMLRLGLKPNQFTLSSVLKA---SGAGATDDKFGRQVHAF 119
Y+Q+ + + A +LF + + + ++ TLS +LK SG + F H +
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESF----HGY 170
Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
K G D + +V +L+++Y +F ++ + LF + ++ V WN ++ + E+A
Sbjct: 171 ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA 230
Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
+ S G P + + ++ S GQ+ +F
Sbjct: 231 IDLSSAFHSSGLNPNEITL-RLLARISGDDS-------------DAGQVKSFANGN---- 272
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
DA V +++ N L+ G A ++ F M+ + + +QVTF
Sbjct: 273 --------DASSV------SEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTF 318
Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVE 328
+ +L L GQ + K G++
Sbjct: 319 ILMLATAVKVDSLALGQQVHCMALKLGLD 347
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 95/198 (47%), Gaps = 5/198 (2%)
Query: 107 ATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNAL 166
++D G+ HA L + + ++ ++L+ MY++ + A +F + ++ VSWN++
Sbjct: 52 SSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSI 111
Query: 167 IAGHARKSEG-----EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHV 221
+A +A+ SE ++A F + ++ + + S + +G + + H +
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA 171
Query: 222 IKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATV 281
K G FV LV++Y K G +++ + +F + RDVV WN ML + G + +
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231
Query: 282 RWFEKMLRNGIAPNQVTF 299
+G+ PN++T
Sbjct: 232 DLSSAFHSSGLNPNEITL 249
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Query: 207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNS 266
++ L GK HA ++ F+ N L+ MY+K GS+ A +VF+++ RD+VSWNS
Sbjct: 51 TSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNS 110
Query: 267 MLTG------CAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320
+L C + +A + F + ++ + +++T +L C H+G + + +
Sbjct: 111 ILAAYAQSSECVVENIQQAFL-LFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHG 169
Query: 321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
K G++ +E V++ + G + EMP +W +L A
Sbjct: 170 YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDV-VLWNLMLKA 220
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/566 (40%), Positives = 357/566 (63%), Gaps = 2/566 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L L+ +H+ I+ + F+ + + + +++ YAK G LD A + KD+V+W
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 559
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
T +I+GY+Q + + A+ F QML G++ ++ L++ + A AG K G+Q+HA
Sbjct: 560 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC-AGLQALKEGQQIHAQAC 618
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
G+ ++ ++L+ +Y+R ++++++ F E+ + ++WNAL++G + E+ALR
Sbjct: 619 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 678
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F M REG + +F++ S A + T +++QGK VHA + K+G V N L+ MYA
Sbjct: 679 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYA 738
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K GSI DAEK F + ++ VSWN+++ ++HG G + F++M+ + + PN VT +
Sbjct: 739 KCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 798
Query: 302 VLTACSHAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
VL+ACSH GL+D+G YF M ++G+ P+ HYV VD+L RAGLL RA +FI+EMPI+
Sbjct: 799 VLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK 858
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
P A VW LL AC +HKN+E+G +AA + EL+P DS ++LL+N+YA + + + R
Sbjct: 859 PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTR 918
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
+ MKE GVKKEP SW+E KN++H F D HP IH+ +++++++ +IGYV D
Sbjct: 919 QKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCF 978
Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
+L+ ++++ + +HSEKLA++F L+S P I++ KN+RVC DCH+ KF SKV
Sbjct: 979 SLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVS 1038
Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
REIIVRD RFHHF G CSC DYW
Sbjct: 1039 NREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 190/393 (48%), Gaps = 14/393 (3%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C ++ L+ +H +L F +D + N +++ Y G L A +F M +D VT+
Sbjct: 298 CKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY 357
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
LI+G SQ E A+ LF +M GL+P+ TL+S++ A A T + G+Q+HA+
Sbjct: 358 NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR-GQQLHAYTT 416
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K G+ N + +LL++YA+ ++ A F E +N V WN ++ + + + R
Sbjct: 417 KLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFR 476
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F +M E P ++Y S+ G LE G+ +H+ +IK+ QL A+V + L+DMYA
Sbjct: 477 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 536
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K G ++ A + R +DVVSW +M+ G Q+ + F +ML GI ++V
Sbjct: 537 KLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTN 596
Query: 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361
++AC+ L EGQ A G + V L R G ++ + + E
Sbjct: 597 AVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY-----LAFEQ 651
Query: 362 TAA----VWGALLGACRMHKNVELGAYAAERIF 390
T A W AL+ + N E A R+F
Sbjct: 652 TEAGDNIAWNALVSGFQQSGNNE----EALRVF 680
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 214/447 (47%), Gaps = 41/447 (9%)
Query: 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISG 67
L E R +H+ IL ++ + + + Y G L A K+FDEMP + + TW +I
Sbjct: 101 LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 160
Query: 68 YSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDW 127
+ + LF +M+ + PN+ T S VL+A G+ Q+HA L G
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 220
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
+ V + L+D+Y+R +D A +F L K+ SW A+I+G ++ +A+R F +M
Sbjct: 221 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 280
Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
G PT +++SSV +A SLE G+ +H V+K G +V N LV +Y G++
Sbjct: 281 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLI 340
Query: 248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
AE +F+ + +RD V++N+++ G +Q G G+ + F++M +G+ P+ T ++ ACS
Sbjct: 341 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 400
Query: 308 HAGLLDEGQGYFALMKKHG----------------------------VEPEEAHYVTFVD 339
G L GQ A K G +E E + V +
Sbjct: 401 ADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV 460
Query: 340 LLGRAGLLD---RALKFIREMPIE---PTAAVWGALLGACRMHKNVELGAYAAERI---- 389
+L GLLD + + R+M IE P + ++L C ++ELG +I
Sbjct: 461 MLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN 520
Query: 390 FELDPHDSGPHILLANIYASAGRLNDA 416
F+L+ + +L ++YA G+L+ A
Sbjct: 521 FQLNAYVCS---VLIDMYAKLGKLDTA 544
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/387 (20%), Positives = 150/387 (38%), Gaps = 60/387 (15%)
Query: 190 GFEPTHFSYSSVFTA-LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED 248
G P H + + L + GSL++G+ +H+ ++K G + L D Y G +
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138
Query: 249 AEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308
A KVF+ + +R + +WN M+ A L F +M+ + PN+ TF VL AC
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198
Query: 309 AGL-LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLD------------------- 348
+ D + A + G+ +DL R G +D
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258
Query: 349 ------------RALKFIREM---PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD 393
A++ +M I PT + ++L AC+ +++E+G + +L
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318
Query: 394 -PHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDA 452
D+ L ++Y G L A S + + A ++ N + +
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIF-----SNMSQRDAVTYNTLINGL-----SQCG 368
Query: 453 HPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKL----QVHSEKLALAFAL 508
+ ++AM E+ +++ G PDS+ + S + L Q+H+ L FA
Sbjct: 369 YGEKAM------ELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 422
Query: 509 ISTPPGSTIHIKKNIRVCGDCHSAFKF 535
+ G+ +++ C D +A +
Sbjct: 423 NNKIEGALLNLYAK---CADIETALDY 446
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/561 (41%), Positives = 346/561 (61%), Gaps = 11/561 (1%)
Query: 8 LKEARIVHA-HILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALIS 66
+K+ +IV A S D+ NTI+ YA+ G +DEAR+LFDE PV+D+ TWTA++S
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289
Query: 67 GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYD 126
GY QN E A LF +M + N+ + +++L G + +
Sbjct: 290 GYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST 345
Query: 127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEM 186
WN +++ YA+ ++ +A LF + ++ VSW A+IAG+++ +ALR F +M
Sbjct: 346 WN-----TMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 187 LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSI 246
REG S+SS + A +LE GK +H ++K G + FVGN L+ MY K GSI
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460
Query: 247 EDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306
E+A +F + +D+VSWN+M+ G ++HG G+ +R+FE M R G+ P+ T + VL+AC
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520
Query: 307 SHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAV 365
SH GL+D+G+ YF M + +GV P HY VDLLGRAGLL+ A ++ MP EP AA+
Sbjct: 521 SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAI 580
Query: 366 WGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425
WG LLGA R+H N EL AA++IF ++P +SG ++LL+N+YAS+GR D + R M++
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640
Query: 426 SGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSY 485
GVKK P SW+E +N H F D+ HP++ I E+ ++K+ GYV +S VL
Sbjct: 641 KGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHD 700
Query: 486 ADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREII 545
+++E+E ++ HSE+LA+A+ ++ G I + KN+RVC DCH+A K+ +++ R II
Sbjct: 701 VEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLII 760
Query: 546 VRDTNRFHHFRDGFCSCGDYW 566
+RD NRFHHF+DG CSCGDYW
Sbjct: 761 LRDNNRFHHFKDGSCSCGDYW 781
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 111/437 (25%), Positives = 189/437 (43%), Gaps = 55/437 (12%)
Query: 24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQ 83
+ D+ NT+L+ YA+ GC+D+AR +FD MP K+ V+W AL+S Y QN + E A +LF
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS 213
Query: 84 MLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD 143
L L +K F + ++ WN +++ YA+
Sbjct: 214 RENWALVSWNCLLGGFVKKKKIVEARQFF----DSMNVRDVVSWN-----TIITGYAQSG 264
Query: 144 QMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFT 203
++D+A LF ++ +W A+++G+ + E+A F +M E S++++
Sbjct: 265 KIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLA 320
Query: 204 ALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVS 263
+E K + NT++ YA+ G I +A+ +F+++ KRD VS
Sbjct: 321 GYVQGERMEMAK----ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS 376
Query: 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK 323
W +M+ G +Q G +R F +M R G N+ +F L+ C+ L+ G+ +
Sbjct: 377 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 436
Query: 324 KHGVEP------------------EEAH-------------YVTFVDLLGRAGLLDRALK 352
K G E EEA+ + T + R G + AL+
Sbjct: 437 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALR 496
Query: 353 FIREMP---IEPTAAVWGALLGACRMHKNVELGA---YAAERIFELDPHDSGPHILLANI 406
F M ++P A A+L AC V+ G Y + + + P +S + + ++
Sbjct: 497 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMP-NSQHYACMVDL 555
Query: 407 YASAGRLNDAARARKMM 423
AG L DA K M
Sbjct: 556 LGRAGLLEDAHNLMKNM 572
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 35/302 (11%)
Query: 31 NTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLK 90
N +++ Y + G + ARKLFDEMP +D+V+W +I GY +N A LF M
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIM------ 152
Query: 91 PNQFTLSSVLKASG---AGATDDK---FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQ 144
P + S SG G DD F R K WN +LL Y + +
Sbjct: 153 PERDVCSWNTMLSGYAQNGCVDDARSVFDRMPE----KNDVSWN-----ALLSAYVQNSK 203
Query: 145 MDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEM-LREGFEPTHFSYSSVFT 203
M++A LF + E+ VSWN L+ G +K + +A + F M +R+ S++++ T
Sbjct: 204 MEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD-----VVSWNTIIT 258
Query: 204 ALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVS 263
A +G +++ + + F +V Y ++ +E+A ++F+++ +R+ VS
Sbjct: 259 GYAQSGKIDEAR----QLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS 314
Query: 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK 323
WN+ML G Q + F+ M N T+ ++T + G + E + F M
Sbjct: 315 WNAMLAGYVQGERMEMAKELFDVM----PCRNVSTWNTMITGYAQCGKISEAKNLFDKMP 370
Query: 324 KH 325
K
Sbjct: 371 KR 372
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 158/349 (45%), Gaps = 28/349 (8%)
Query: 25 NDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQM 84
+DI N +++Y + G +EA ++F MP V++ +ISGY +N + E A LF +M
Sbjct: 62 SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121
Query: 85 LRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQ 144
L + ++ G + F + WN ++L YA+
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELF----EIMPERDVCSWN-----TMLSGYAQNGC 172
Query: 145 MDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204
+DDA +F + KN+VSWNAL++ + + S+ E+A F RE + S++ +
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS--RENW--ALVSWNCLL-- 226
Query: 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVG-NTLVDMYAKSGSIEDAEKVFNRLLKRDVVS 263
G +++ K V A + V NT++ YA+SG I++A ++F+ +DV +
Sbjct: 227 ---GGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT 283
Query: 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK 323
W +M++G Q+ + + F+KM N+V++ +L ++ + F +M
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMP 339
Query: 324 KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
V + + T + + G + A +MP + W A++
Sbjct: 340 CRNV----STWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-WAAMIAG 383
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + L+ + +H ++ ++ + N +L Y KCG ++EA LF EM KD+V+W
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 478
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
+I+GYS++ E A+ F M R GLKP+ T+ +VL A DK + +
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ 538
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDA 148
YG N + ++D+ R ++DA
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDA 565
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/614 (39%), Positives = 351/614 (57%), Gaps = 51/614 (8%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L + +H + S ++ + N +++ YAKCG +DEA +F M VKD+V+W
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 62 TALISGYSQNDQPENAIILFS-----------------------------------QMLR 86
A+++GYSQ + E+A+ LF QML
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 87 LGLKPNQFTLSSVLKA-SGAGATDDKFGRQVHAFCLKYGYDWNV-------YVGSSLLDM 138
G+KPN+ TL SVL + GA G+++H + +KY D V + L+DM
Sbjct: 359 SGIKPNEVTLISVLSGCASVGAL--MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDM 416
Query: 139 YARFDQMDDAWFLFTALESKNE--VSWNALIAGHARKSEGEKALRTFSEMLREGFE--PT 194
YA+ ++D A +F +L K V+W +I G+++ + KAL SEM E + P
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476
Query: 195 HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA-FVGNTLVDMYAKSGSIEDAEKVF 253
F+ S A AS +L GK +HA+ +++ V FV N L+DMYAK GSI DA VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536
Query: 254 NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313
+ ++ ++ V+W S++TG HG G+ + F++M R G + VT L VL ACSH+G++D
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596
Query: 314 EGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
+G YF MK GV P HY VDLLGRAG L+ AL+ I EMP+EP VW A L
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656
Query: 373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEP 432
CR+H VELG YAAE+I EL + G + LL+N+YA+AGR D R R +M+ GVKK P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716
Query: 433 ACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQERE 492
CSWVE F D HP I++ + ++IK IGYVP++ L D +E++
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKD 776
Query: 493 AKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRF 552
L HSEKLALA+ +++TP G+ I I KN+RVCGDCH+AF + S++++ +II+RD++RF
Sbjct: 777 DLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRF 836
Query: 553 HHFRDGFCSCGDYW 566
HHF++G CSC YW
Sbjct: 837 HHFKNGSCSCKGYW 850
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 212/447 (47%), Gaps = 60/447 (13%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + ++ HA L + F +++ + N ++ Y++C L +ARK+FDEM V D+V+W
Sbjct: 137 CGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSW 196
Query: 62 TALISGYSQNDQPENAIILFSQML-RLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
++I Y++ +P+ A+ +FS+M G +P+ TL +VL + T G+Q+H F
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT-HSLGKQLHCFA 255
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
+ N++VG+ L+DMYA+ MD+A +F+ + K+ VSWNA++AG+++ E A+
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAV 315
Query: 181 RTFS-----------------------------------EMLREGFEPTHFSYSSVFTAL 205
R F +ML G +P + SV +
Sbjct: 316 RLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGC 375
Query: 206 ASTGSLEQGKWVHAHVI-------KSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL- 257
AS G+L GK +H + I K+G V N L+DMYAK ++ A +F+ L
Sbjct: 376 ASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSP 435
Query: 258 -KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA--PNQVTFLCVLTACSHAGLLDE 314
+RDVV+W M+ G +QHG + +M PN T C L AC+ L
Sbjct: 436 KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRI 495
Query: 315 GQGY--FALMKKHGVEPEEAHYVT--FVDLLGRAGLLDRALKFIREMPIEPTAAVWGALL 370
G+ +AL + P +V+ +D+ + G + A + + + + W +L+
Sbjct: 496 GKQIHAYALRNQQNAVPL---FVSNCLIDMYAKCGSISDA-RLVFDNMMAKNEVTWTSLM 551
Query: 371 GACRMHKNVE--LGAYAAERI--FELD 393
MH E LG + R F+LD
Sbjct: 552 TGYGMHGYGEEALGIFDEMRRIGFKLD 578
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/490 (27%), Positives = 212/490 (43%), Gaps = 57/490 (11%)
Query: 6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKD--MVTWTA 63
K + + +++H +L + + + +++ Y GCL A L P D + W +
Sbjct: 39 KTISQVKLIHQKLLSFGILT-LNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97
Query: 64 LISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKY 123
LI Y N + LF M L P+ +T V KA G + + G HA L
Sbjct: 98 LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGE-ISSVRCGESAHALSLVT 156
Query: 124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTF 183
G+ NV+VG++L+ MY+R + DA +F + + VSWN++I +A+ + + AL F
Sbjct: 157 GFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216
Query: 184 SEMLRE-GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK 242
S M E G P + + +V AS G+ GK +H + S FVGN LVDMYAK
Sbjct: 217 SRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAK 276
Query: 243 SGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEK---------------- 286
G +++A VF+ + +DVVSWN+M+ G +Q G + VR FEK
Sbjct: 277 CGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAA 336
Query: 287 -------------------MLRNGIAPNQVTFLCVLTACSHAGLLDEGQ-------GYFA 320
ML +GI PN+VT + VL+ C+ G L G+ Y
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPI 396
Query: 321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNV 379
++K+G E +D+ + +D A + P E W ++G H +
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456
Query: 380 ELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVET 439
+FE D ++ + L A R K + ++ +
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLA-ALRIGKQIHAYALRNQ-------- 507
Query: 440 KNAVHMFVAN 449
+NAV +FV+N
Sbjct: 508 QNAVPLFVSN 517
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/555 (41%), Positives = 346/555 (62%), Gaps = 3/555 (0%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+HA + + F D ++ N IL+ Y+K + E R LFDEMP D V++ +IS YSQ DQ
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
E ++ F +M +G F +++L + A + + GRQ+H L D ++VG+
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIA-ANLSSLQMGRQLHCQALLATADSILHVGN 390
Query: 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193
SL+DMYA+ + ++A +F +L + VSW ALI+G+ +K L+ F++M
Sbjct: 391 SLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRA 450
Query: 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF 253
++++V A AS SL GK +HA +I+SG F G+ LVDMYAK GSI+DA +VF
Sbjct: 451 DQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVF 510
Query: 254 NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313
+ R+ VSWN++++ A +G G+A + F KM+ +G+ P+ V+ L VLTACSH G ++
Sbjct: 511 EEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVE 570
Query: 314 EGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
+G YF M +G+ P++ HY +DLLGR G A K + EMP EP +W ++L A
Sbjct: 571 QGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630
Query: 373 CRMHKNVELGAYAAERIFELDP-HDSGPHILLANIYASAGRLNDAARARKMMKESGVKKE 431
CR+HKN L AAE++F ++ D+ ++ ++NIYA+AG +K M+E G+KK
Sbjct: 631 CRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKV 690
Query: 432 PACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQER 491
PA SWVE + +H+F +ND HP I +K E++ +I++ GY PD+S V+ D+Q +
Sbjct: 691 PAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMK 750
Query: 492 EAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNR 551
L+ HSE+LA+AFALISTP G I + KN+R C DCH+A K SK+V+REI VRDT+R
Sbjct: 751 IESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSR 810
Query: 552 FHHFRDGFCSCGDYW 566
FHHF +G CSCGDYW
Sbjct: 811 FHHFSEGVCSCGDYW 825
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 194/361 (53%), Gaps = 4/361 (1%)
Query: 14 VHAHILGSAFKND--IAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQN 71
VHA + F + + + N +L +Y + LD A LF+E+P KD VT+ LI+GY ++
Sbjct: 169 VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKD 228
Query: 72 DQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYV 131
+I LF +M + G +P+ FT S VLKA G D G+Q+HA + G+ + V
Sbjct: 229 GLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV-VGLHDFALGQQLHALSVTTGFSRDASV 287
Query: 132 GSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGF 191
G+ +LD Y++ D++ + LF + + VS+N +I+ +++ + E +L F EM GF
Sbjct: 288 GNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF 347
Query: 192 EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEK 251
+ +F ++++ + A+ SL+ G+ +H + + + VGN+LVDMYAK E+AE
Sbjct: 348 DRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAEL 407
Query: 252 VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL 311
+F L +R VSW ++++G Q GL A ++ F KM + + +Q TF VL A +
Sbjct: 408 IFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS 467
Query: 312 LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLG 371
L G+ A + + G VD+ + G + A++ EMP + A W AL+
Sbjct: 468 LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALIS 526
Query: 372 A 372
A
Sbjct: 527 A 527
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 156/287 (54%), Gaps = 3/287 (1%)
Query: 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTA 63
+L L+ R +H L + + + + N++++ YAKC +EA +F +P + V+WTA
Sbjct: 363 NLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTA 422
Query: 64 LISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKY 123
LISGY Q + LF++M L+ +Q T ++VLKAS + A+ G+Q+HAF ++
Sbjct: 423 LISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS-LLLGKQLHAFIIRS 481
Query: 124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTF 183
G NV+ GS L+DMYA+ + DA +F + +N VSWNALI+ HA +GE A+ F
Sbjct: 482 GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAF 541
Query: 184 SEMLREGFEPTHFSYSSVFTALASTGSLEQG-KWVHAHVIKSGGQLVAFVGNTLVDMYAK 242
++M+ G +P S V TA + G +EQG ++ A G ++D+ +
Sbjct: 542 AKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGR 601
Query: 243 SGSIEDAEKVFNRL-LKRDVVSWNSMLTGCAQHGLGKATVRWFEKML 288
+G +AEK+ + + + D + W+S+L C H R EK+
Sbjct: 602 NGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLF 648
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 172/351 (49%), Gaps = 7/351 (1%)
Query: 24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQ 83
KN ++ NT+++ + K G + AR LFD MP + +VTWT L+ Y++N + A LF Q
Sbjct: 77 KNTVS-TNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135
Query: 84 MLRLG--LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVY--VGSSLLDMY 139
M R P+ T +++L + G QVHAF +K G+D N + V + LL Y
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFLTVSNVLLKSY 194
Query: 140 ARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYS 199
++D A LF + K+ V++N LI G+ + +++ F +M + G +P+ F++S
Sbjct: 195 CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFS 254
Query: 200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR 259
V A+ G+ +HA + +G A VGN ++D Y+K + + +F+ + +
Sbjct: 255 GVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPEL 314
Query: 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319
D VS+N +++ +Q +A++ +F +M G F +L+ ++ L G+
Sbjct: 315 DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLH 374
Query: 320 ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALL 370
+ + VD+ + + + A + +P + T W AL+
Sbjct: 375 CQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALI 424
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 33/136 (24%)
Query: 207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNS 266
S + + V A +IK+G N +V+ + G + A KV++ + ++ VS N+
Sbjct: 25 SPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNT 84
Query: 267 MLTGCAQHG------------LGKATVRW-------------------FEKMLRNG--IA 293
M++G + G + V W F +M R+
Sbjct: 85 MISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL 144
Query: 294 PNQVTFLCVLTACSHA 309
P+ VTF +L C+ A
Sbjct: 145 PDHVTFTTLLPGCNDA 160
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/566 (39%), Positives = 352/566 (62%), Gaps = 2/566 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + EA+ H I+ + D+ + N ++NAY+KCG ++ AR++FD M + +V+W
Sbjct: 71 CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 130
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
+I Y++N A+ +F +M G K ++FT+SSVL A G D +++H +
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNC-DALECKKLHCLSV 189
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K D N+YVG++LLD+YA+ + DA +F +++ K+ V+W++++AG+ + E+AL
Sbjct: 190 KTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALL 249
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
+ R E F+ SSV A ++ +L +GK +HA + KSG FV ++ VDMYA
Sbjct: 250 LYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYA 309
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K GS+ ++ +F+ + ++++ WN++++G A+H K + FEKM ++G+ PN+VTF
Sbjct: 310 KCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSS 369
Query: 302 VLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
+L+ C H GL++EG+ +F LM+ +G+ P HY VD+LGRAGLL A + I+ +P +
Sbjct: 370 LLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFD 429
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
PTA++WG+LL +CR++KN+EL AAE++FEL+P ++G H+LL+NIYA+ + + A++R
Sbjct: 430 PTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSR 489
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
K++++ VKK SW++ K+ VH F + HP+ I + K ++ GY P
Sbjct: 490 KLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVE 549
Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
H L + ++E L HSEKLAL F L+ P S + I KN+R+C DCH K AS
Sbjct: 550 HELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMAT 609
Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
R IIVRD NRFHHF DG CSCGD+W
Sbjct: 610 RRFIIVRDVNRFHHFSDGHCSCGDFW 635
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/575 (41%), Positives = 352/575 (61%), Gaps = 13/575 (2%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKC---GCLDEARKLFDEMPVKDM 58
C L+ L + +H+ + S +D+ + ++++ YAKC G +D+ RK+FD M +
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336
Query: 59 VTWTALISGYSQN-DQPENAIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKFGRQV 116
++WTALI+GY +N + AI LFS+M+ G ++PN FT SS KA G +D + G+QV
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACG-NLSDPRVGKQV 395
Query: 117 HAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEG 176
K G N V +S++ M+ + D+M+DA F +L KN VS+N + G R
Sbjct: 396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455
Query: 177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
E+A + SE+ + F+++S+ + +A+ GS+ +G+ +H+ V+K G V N L
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515
Query: 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
+ MY+K GSI+ A +VFN + R+V+SW SM+TG A+HG + F +M+ G+ PN+
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575
Query: 297 VTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIR 355
VT++ +L+ACSH GL+ EG +F ++ + H ++P+ HY VDLL RAGLL A +FI
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635
Query: 356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415
MP + VW LGACR+H N ELG AA +I ELDP++ +I L+NIYA AG+ +
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEE 695
Query: 416 AARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY 475
+ R+ MKE + KE CSW+E + +H F D AHP I+ + + +IK+ GY
Sbjct: 696 STEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGY 755
Query: 476 VPDSSHVL----SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHS 531
VPD+ VL D+ E+E L HSEK+A+AF LIST + + KN+RVCGDCH+
Sbjct: 756 VPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHN 815
Query: 532 AFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
A K+ S V REI++RD NRFHHF+DG CSC DYW
Sbjct: 816 AMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/475 (26%), Positives = 226/475 (47%), Gaps = 54/475 (11%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDM 58
C + + ++VHA ++ + D + N++++ Y+K G +A +F+ M +D+
Sbjct: 72 CIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDV 131
Query: 59 VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKF---GRQ 115
V+W+A+++ Y N + +AI +F + L LGL PN + ++V++A ++ F GR
Sbjct: 132 VSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA----CSNSDFVGVGRV 187
Query: 116 VHAFCLKYG-YDWNVYVGSSLLDMYARFDQ-MDDAWFLFTALESKNEVSWNALIAGHARK 173
F +K G ++ +V VG SL+DM+ + + ++A+ +F + N V+W +I +
Sbjct: 188 TLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM 247
Query: 174 SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG 233
+A+R F +M+ GFE F+ SSVF+A A +L GK +H+ I+SG LV V
Sbjct: 248 GFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG--LVDDVE 305
Query: 234 NTLVDMYAK---SGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH-GLGKATVRWFEKMLR 289
+LVDMYAK GS++D KVF+R+ V+SW +++TG ++ L + F +M+
Sbjct: 306 CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT 365
Query: 290 NG-IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV--------------------- 327
G + PN TF AC + G+ K G+
Sbjct: 366 QGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRME 425
Query: 328 ----------EPEEAHYVTFVDLLGRAGLLDRALKFIREMP---IEPTAAVWGALLGACR 374
E Y TF+D R ++A K + E+ + +A + +LL
Sbjct: 426 DAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA 485
Query: 375 MHKNVELGAYAAERIFELDPHDSGPHI-LLANIYASAGRLNDAARARKMMKESGV 428
++ G ++ +L + P L ++Y+ G ++ A+R M+ V
Sbjct: 486 NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNV 540
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 189/403 (46%), Gaps = 20/403 (4%)
Query: 77 AIILFSQMLRLGLKP-NQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSL 135
A+ M R G++P + T SS+LK S A D + G+ VHA +++ + + + +SL
Sbjct: 45 AVSALDLMARDGIRPMDSVTFSSLLK-SCIRARDFRLGKLVHARLIEFDIEPDSVLYNSL 103
Query: 136 LDMYARFDQMDDAWFLFTALE---SKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFE 192
+ +Y++ A +F + ++ VSW+A++A + A++ F E L G
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163
Query: 193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGG-QLVAFVGNTLVDMYAK-SGSIEDAE 250
P + Y++V A +++ + G+ ++K+G + VG +L+DM+ K S E+A
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 251 KVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310
KVF+++ + +VV+W M+T C Q G + +R+F M+ +G ++ T V +AC+
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283
Query: 311 LLDEGQGYFALMKKHG-VEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGAL 369
L G+ + + G V+ E V G +D K M + + W AL
Sbjct: 284 NLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWTAL 342
Query: 370 LGACRMHKNVELGAYAAERIFEL--DPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427
+ KN L A E+ H H ++ + + G L+D ++++ ++
Sbjct: 343 ITG--YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQA- 399
Query: 428 VKKEPACSWVETKNAVHMFVANDDAH-PQRAMIHKKWREISEK 469
K+ A + + + MFV +D QRA + +SEK
Sbjct: 400 FKRGLASNSSVANSVISMFVKSDRMEDAQRA-----FESLSEK 437
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 126/285 (44%), Gaps = 18/285 (6%)
Query: 166 LIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQGKWVHAHVIKS 224
LI H + A+ M R+G P ++SS+ + GK VHA +I+
Sbjct: 32 LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91
Query: 225 GGQLVAFVGNTLVDMYAKSGSIEDAEKVFN---RLLKRDVVSWNSMLTGCAQHGLGKATV 281
+ + + N+L+ +Y+KSG AE VF R KRDVVSW++M+ +G +
Sbjct: 92 DIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAI 151
Query: 282 RWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHG-VEPEEAHYVTFVDL 340
+ F + L G+ PN + V+ ACS++ + G+ + K G E + + +D+
Sbjct: 152 KVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211
Query: 341 LGRA-GLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG- 398
+ + A K +M E W ++ C +++G F LD SG
Sbjct: 212 FVKGENSFENAYKVFDKMS-ELNVVTWTLMITRC-----MQMGFPREAIRFFLDMVLSGF 265
Query: 399 --PHILLANIYASAGRLNDAARARKMMK---ESGVKKEPACSWVE 438
L++++++ L + + +++ SG+ + CS V+
Sbjct: 266 ESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVD 310
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/558 (41%), Positives = 337/558 (60%), Gaps = 3/558 (0%)
Query: 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQ 70
A+ VH IL + + D + +L Y + G + +A K+F+EMP D+V W+ +I+ + Q
Sbjct: 266 AKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325
Query: 71 NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVY 130
N A+ LF +M + PN+FTLSS+L G G Q+H +K G+D ++Y
Sbjct: 326 NGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSG-LGEQLHGLVVKVGFDLDIY 384
Query: 131 VGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREG 190
V ++L+D+YA+ ++MD A LF L SKNEVSWN +I G+ EG KA F E LR
Sbjct: 385 VSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQ 444
Query: 191 FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE 250
T ++SS A AS S++ G VH IK+ V N+L+DMYAK G I+ A+
Sbjct: 445 VSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQ 504
Query: 251 KVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310
VFN + DV SWN++++G + HGLG+ +R + M PN +TFL VL+ CS+AG
Sbjct: 505 SVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAG 564
Query: 311 LLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGAL 369
L+D+GQ F ++++ HG+EP HY V LLGR+G LD+A+K I +P EP+ +W A+
Sbjct: 565 LIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAM 624
Query: 370 LGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK 429
L A N E +AE I +++P D ++L++N+YA A + + A RK MKE GVK
Sbjct: 625 LSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVK 684
Query: 430 KEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQ 489
KEP SW+E + VH F HP +I+ ++ K + GYVPD + VL D +
Sbjct: 685 KEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDE 744
Query: 490 EREAKLQVHSEKLALAFALISTPPG-STIHIKKNIRVCGDCHSAFKFASKVVEREIIVRD 548
E++ +L VHSE+LALA+ L+ P + I I KN+R+C DCHSA K S +V+R++++RD
Sbjct: 745 EKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRD 804
Query: 549 TNRFHHFRDGFCSCGDYW 566
NRFHHF G CSCGD+W
Sbjct: 805 MNRFHHFHAGVCSCGDHW 822
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 188/391 (48%), Gaps = 9/391 (2%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+H+ I+ + ++ + ++NAY+ CG +D AR +F+ + KD+V W ++S Y +N
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKAS-GAGATDDKFGRQVHAFCLKYGYDWNVYVG 132
E+++ L S M G PN +T + LKAS G GA D F + VH LK Y + VG
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFD--FAKGVHGQILKTCYVLDPRVG 285
Query: 133 SSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFE 192
LL +Y + M DA+ +F + + V W+ +IA + +A+ F M RE F
Sbjct: 286 VGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRM-REAFV 344
Query: 193 -PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEK 251
P F+ SS+ A G+ +H V+K G L +V N L+D+YAK ++ A K
Sbjct: 345 VPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVK 404
Query: 252 VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL 311
+F L ++ VSWN+++ G G G F + LRN ++ +VTF L AC+
Sbjct: 405 LFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLAS 464
Query: 312 LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLG 371
+D G L K + A + +D+ + G + A EM A+ W AL+
Sbjct: 465 MDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVAS-WNALIS 523
Query: 372 ACRMHKNVELGAYAAERIFELDPHDSGPHIL 402
H LG A + + D P+ L
Sbjct: 524 GYSTHG---LGRQALRILDIMKDRDCKPNGL 551
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 169/357 (47%), Gaps = 5/357 (1%)
Query: 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
+C A+ +H IL D+ N +LNAY K G +A LFDEMP ++ V+
Sbjct: 58 RCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVS 117
Query: 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
+ L GY+ D I L+S++ R G + N +S LK + +H+
Sbjct: 118 FVTLAQGYACQD----PIGLYSRLHREGHELNPHVFTSFLKLF-VSLDKAEICPWLHSPI 172
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
+K GYD N +VG++L++ Y+ +D A +F + K+ V W +++ + E +L
Sbjct: 173 VKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSL 232
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
+ S M GF P ++++ + A G+ + K VH ++K+ L VG L+ +Y
Sbjct: 233 KLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLY 292
Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
+ G + DA KVFN + K DVV W+ M+ Q+G V F +M + PN+ T
Sbjct: 293 TQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLS 352
Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357
+L C+ G+ L+ K G + + +D+ + +D A+K E+
Sbjct: 353 SILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAEL 409
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L + VH + + +A+ N++++ YAKCG + A+ +F+EM D+ +W
Sbjct: 459 CASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASW 518
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
ALISGYS + A+ + M KPN T VL D+ +
Sbjct: 519 NALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIR 578
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVS-WNALIAGHARKSEGEKAL 180
+G + + + ++ + R Q+D A L + + V W A+++ ++ E A
Sbjct: 579 DHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFAR 638
Query: 181 RTFSEMLR 188
R+ E+L+
Sbjct: 639 RSAEEILK 646
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 242/626 (38%), Positives = 368/626 (58%), Gaps = 68/626 (10%)
Query: 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCG-------------------------- 41
++ + VH+ I+ + ++++ N++LN YAKCG
Sbjct: 162 METGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIAL 221
Query: 42 -----CLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLG-LKPNQFT 95
+D A F++M +D+VTW ++ISG++Q A+ +FS+MLR L P++FT
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281
Query: 96 LSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR-------------- 141
L+SVL A A G+Q+H+ + G+D + V ++L+ MY+R
Sbjct: 282 LASVLSAC-ANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQR 340
Query: 142 -------------------FDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRT 182
M+ A +F +L+ ++ V+W A+I G+ + +A+
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINL 400
Query: 183 FSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK 242
F M+ G P ++ +++ + +S SL GK +H +KSG V N L+ MYAK
Sbjct: 401 FRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAK 460
Query: 243 SGSIEDAEKVFNRL-LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
+G+I A + F+ + +RD VSW SM+ AQHG + + FE ML G+ P+ +T++
Sbjct: 461 AGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVG 520
Query: 302 VLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
V +AC+HAGL+++G+ YF +MK + P +HY VDL GRAGLL A +FI +MPIE
Sbjct: 521 VFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIE 580
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
P WG+LL ACR+HKN++LG AAER+ L+P +SG + LAN+Y++ G+ +AA+ R
Sbjct: 581 PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIR 640
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
K MK+ VKKE SW+E K+ VH+F D HP++ I+ ++I ++IK++GYVPD++
Sbjct: 641 KSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTA 700
Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
VL +++ +E L+ HSEKLA+AF LISTP +T+ I KN+RVC DCH+A KF SK+V
Sbjct: 701 SVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLV 760
Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
REIIVRDT RFHHF+DGFCSC DYW
Sbjct: 761 GREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 211/465 (45%), Gaps = 75/465 (16%)
Query: 31 NTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLK 90
NT+L+AY+K G +D + FD++P +D V+WT +I GY Q AI + M++ G++
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 91 PNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR--------- 141
P QFTL++VL AS A + G++VH+F +K G NV V +SLL+MYA+
Sbjct: 144 PTQFTLTNVL-ASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKF 202
Query: 142 -FD---------------------QMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
FD QMD A F + ++ V+WN++I+G ++ +A
Sbjct: 203 VFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262
Query: 180 LRTFSEMLREG-FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238
L FS+MLR+ P F+ +SV +A A+ L GK +H+H++ +G + V N L+
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322
Query: 239 MYAKSGSIEDAEK---------------------------------VFNRLLKRDVVSWN 265
MY++ G +E A + +F L RDVV+W
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382
Query: 266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH 325
+M+ G QHG + F M+ G PN T +L+ S L G+ K
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442
Query: 326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVE--LGA 383
G + + + +AG + A + + E W +++ A H + E L
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALEL 502
Query: 384 YAAERIFELDPHDSGPHILLANIYAS---AGRLNDAARARKMMKE 425
+ + L P HI ++++ AG +N + MMK+
Sbjct: 503 FETMLMEGLRP----DHITYVGVFSACTHAGLVNQGRQYFDMMKD 543
Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 158/310 (50%), Gaps = 39/310 (12%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDM--- 58
C +L+KL + +H+HI+ + F + N +++ Y++CG ++ AR+L ++ KD+
Sbjct: 289 CANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348
Query: 59 ------------------------------VTWTALISGYSQNDQPENAIILFSQMLRLG 88
V WTA+I GY Q+ AI LF M+ G
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408
Query: 89 LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDA 148
+PN +TL++ + + + G+Q+H +K G ++V V ++L+ MYA+ + A
Sbjct: 409 QRPNSYTLAA-MLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSA 467
Query: 149 WFLFTALE-SKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS 207
F + ++ VSW ++I A+ E+AL F ML EG P H +Y VF+A
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527
Query: 208 TGSLEQGKWVHAHVIKSGGQLVAFVGN--TLVDMYAKSGSIEDAEKVFNRL-LKRDVVSW 264
G + QG+ + ++K +++ + + +VD++ ++G +++A++ ++ ++ DVV+W
Sbjct: 528 AGLVNQGRQ-YFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTW 586
Query: 265 NSMLTGCAQH 274
S+L+ C H
Sbjct: 587 GSLLSACRVH 596
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 131/268 (48%), Gaps = 37/268 (13%)
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
L+ + WN ++L Y++ MD F L ++ VSW +I G+ + KA+
Sbjct: 77 LRTAFSWN-----TVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAI 131
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
R +M++EG EPT F+ ++V ++A+T +E GK VH+ ++K G + V N+L++MY
Sbjct: 132 RVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMY 191
Query: 241 AKSGSIEDAEKVFNRLL-------------------------------KRDVVSWNSMLT 269
AK G A+ VF+R++ +RD+V+WNSM++
Sbjct: 192 AKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMIS 251
Query: 270 GCAQHGLGKATVRWFEKMLRNG-IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE 328
G Q G + F KMLR+ ++P++ T VL+AC++ L G+ + + G +
Sbjct: 252 GFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFD 311
Query: 329 PEEAHYVTFVDLLGRAGLLDRALKFIRE 356
+ + R G ++ A + I +
Sbjct: 312 ISGIVLNALISMYSRCGGVETARRLIEQ 339
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Query: 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289
AF NT++ Y+K G ++ + F++L +RD VSW +M+ G G +R M++
Sbjct: 80 AFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK 139
Query: 290 NGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR 349
GI P Q T VL + + ++ G+ + + K G+ + + +++ + G
Sbjct: 140 EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199
Query: 350 ALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD 393
A KF+ + + + W A++ ++L E++ E D
Sbjct: 200 A-KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/587 (39%), Positives = 351/587 (59%), Gaps = 35/587 (5%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+H + SA +D+ + N++++ Y CG LD A K+F + KD+V+W ++I+G+ Q
Sbjct: 153 LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 212
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
P+ A+ LF +M +K + T+ VL A A + +FGRQV ++ + + N+ + +
Sbjct: 213 PDKALELFKKMESEDVKASHVTMVGVLSAC-AKIRNLEFGRQVCSYIEENRVNVNLTLAN 271
Query: 134 SLLDMYARFDQMDDAWFLFTALESKNEVSW------------------------------ 163
++LDMY + ++DA LF A+E K+ V+W
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVA 331
Query: 164 -NALIAGHARKSEGEKALRTFSEM-LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHV 221
NALI+ + + + +AL F E+ L++ + + S +A A G+LE G+W+H+++
Sbjct: 332 WNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYI 391
Query: 222 IKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATV 281
K G ++ V + L+ MY+K G +E + +VFN + KRDV W++M+ G A HG G V
Sbjct: 392 KKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAV 451
Query: 282 RWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDL 340
F KM + PN VTF V ACSH GL+DE + F M+ +G+ PEE HY VD+
Sbjct: 452 DMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDV 511
Query: 341 LGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400
LGR+G L++A+KFI MPI P+ +VWGALLGAC++H N+ L A R+ EL+P + G H
Sbjct: 512 LGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAH 571
Query: 401 ILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIH 460
+LL+NIYA G+ + + RK M+ +G+KKEP CS +E +H F++ D+AHP ++
Sbjct: 572 VLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVY 631
Query: 461 KKWREISEKIKQIGYVPDSSHVLSYADQQE-REAKLQVHSEKLALAFALISTPPGSTIHI 519
K E+ EK+K GY P+ S VL +++E +E L +HSEKLA+ + LIST I +
Sbjct: 632 GKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRV 691
Query: 520 KKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
KN+RVCGDCHS K S++ +REIIVRD RFHHFR+G CSC D+W
Sbjct: 692 IKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/445 (24%), Positives = 216/445 (48%), Gaps = 44/445 (9%)
Query: 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTI--LNAYAKCGCLDEARKLFDEMPVKDM 58
+C L++LK+ H H++ + +D + + + A + L+ ARK+FDE+P +
Sbjct: 39 RCVSLRQLKQT---HGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNS 95
Query: 59 VTWTALISGYSQNDQPENAIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKFGRQVH 117
W LI Y+ P +I F M+ PN++T ++KA+ A + G+ +H
Sbjct: 96 FAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAA-AEVSSLSLGQSLH 154
Query: 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE 177
+K +V+V +SL+ Y +D A +FT ++ K+ VSWN++I G +K +
Sbjct: 155 GMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPD 214
Query: 178 KALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237
KAL F +M E + +H + V +A A +LE G+ V +++ ++ + + N ++
Sbjct: 215 KALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAML 274
Query: 238 DMYAKSGSIEDAEKVF-------------------------------NRLLKRDVVSWNS 266
DMY K GSIEDA+++F N + ++D+V+WN+
Sbjct: 275 DMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNA 334
Query: 267 MLTGCAQHG-LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH 325
+++ Q+G +A + + E L+ + NQ+T + L+AC+ G L+ G+ + +KKH
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKH 394
Query: 326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYA 385
G+ + + + G L+++ + + + VW A++G MH G A
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG---CGNEA 450
Query: 386 AERIFELDPHDSGPH-ILLANIYAS 409
+ +++ + P+ + N++ +
Sbjct: 451 VDMFYKMQEANVKPNGVTFTNVFCA 475
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 154/310 (49%), Gaps = 39/310 (12%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C ++ L+ R V ++I + ++ + N +L+ Y KCG +++A++LFD M KD VTW
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 62 TAL-------------------------------ISGYSQNDQPENAIILFSQM-LRLGL 89
T + IS Y QN +P A+I+F ++ L+ +
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 90 KPNQFTLSSVLKASG-AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDA 148
K NQ TL S L A GA + GR +H++ K+G N +V S+L+ MY++ ++ +
Sbjct: 362 KLNQITLVSTLSACAQVGALE--LGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 149 WFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAST 208
+F ++E ++ W+A+I G A G +A+ F +M +P ++++VF A + T
Sbjct: 420 REVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479
Query: 209 GSLEQGKWVHAHVIKSGGQLVAFVGN--TLVDMYAKSGSIEDAEKVFNRL-LKRDVVSWN 265
G +++ + + H ++S +V + +VD+ +SG +E A K + + W
Sbjct: 480 GLVDEAESLF-HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWG 538
Query: 266 SMLTGCAQHG 275
++L C H
Sbjct: 539 ALLGACKIHA 548
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 137/307 (44%), Gaps = 9/307 (2%)
Query: 114 RQVHAFCLKYGYDWNVYVGSSLLDMYA--RFDQMDDAWFLFTALESKNEVSWNALIAGHA 171
+Q H ++ G + Y S L M A F ++ A +F + N +WN LI +A
Sbjct: 47 KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106
Query: 172 RKSEGEKALRTFSEMLREG-FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA 230
+ ++ F +M+ E P +++ + A A SL G+ +H +KS
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV 166
Query: 231 FVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN 290
FV N+L+ Y G ++ A KVF + ++DVVSWNSM+ G Q G + F+KM
Sbjct: 167 FVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESE 226
Query: 291 GIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRA 350
+ + VT + VL+AC+ L+ G+ + ++++ V +D+ + G ++ A
Sbjct: 227 DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 286
Query: 351 LKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH-DSGPHILLANIYAS 409
+ M E W +L + ++ E AA + P D L + Y
Sbjct: 287 KRLFDAME-EKDNVTWTTMLDGYAISEDYE----AAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 410 AGRLNDA 416
G+ N+A
Sbjct: 342 NGKPNEA 348
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 13/219 (5%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + L+ R +H++I + + + + +++ Y+KCG L+++R++F+ + +D+ W
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
+A+I G + + A+ +F +M +KPN T ++V A D+ H
Sbjct: 435 SAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMES 494
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVS-WNALIAG---HARKSEGE 177
YG + ++D+ R ++ A A+ S W AL+ HA + E
Sbjct: 495 NYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAE 554
Query: 178 KALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW 216
A E L + H S+++ L GKW
Sbjct: 555 MACTRLLE-LEPRNDGAHVLLSNIYAKL--------GKW 584
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/571 (39%), Positives = 353/571 (61%), Gaps = 10/571 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
CT +H++ + ++++ + N +++ YA+ G L + +K+FD M V+D+++W
Sbjct: 257 CTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISW 316
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTL---SSVLKASGAGATDDKFGRQVHA 118
++I Y N+QP AI LF +M ++P+ TL +S+L G D + R V
Sbjct: 317 NSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG----DIRACRSVQG 372
Query: 119 FCLKYGYDW-NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE 177
F L+ G+ ++ +G++++ MYA+ +D A +F L + + +SWN +I+G+A+
Sbjct: 373 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFAS 432
Query: 178 KALRTFSEMLREG-FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
+A+ ++ M EG ++ SV A + G+L QG +H ++K+G L FV +L
Sbjct: 433 EAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSL 492
Query: 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
DMY K G +EDA +F ++ + + V WN+++ HG G+ V F++ML G+ P+
Sbjct: 493 ADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDH 552
Query: 297 VTFLCVLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIR 355
+TF+ +L+ACSH+GL+DEGQ F +M+ +G+ P HY VD+ GRAG L+ ALKFI+
Sbjct: 553 ITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIK 612
Query: 356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415
M ++P A++WGALL ACR+H NV+LG A+E +FE++P G H+LL+N+YASAG+
Sbjct: 613 SMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEG 672
Query: 416 AARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY 475
R + G++K P S +E N V +F + HP ++++ + K+K IGY
Sbjct: 673 VDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGY 732
Query: 476 VPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKF 535
VPD VL + E+E L HSE+LA+AFALI+TP +TI I KN+RVCGDCHS KF
Sbjct: 733 VPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKF 792
Query: 536 ASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
SK+ EREIIVRD+NRFHHF++G CSCGDYW
Sbjct: 793 ISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 165/310 (53%), Gaps = 12/310 (3%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
CT+L+ A+ +HA ++ S ++ + ++N Y G + AR FD + +D+ W
Sbjct: 64 CTNLQS---AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAW 120
Query: 62 TALISGYSQNDQPENAIILFSQ-MLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
+ISGY + I FS ML GL P+ T SVLKA D G ++H
Sbjct: 121 NLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT-VID---GNKIHCLA 176
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
LK+G+ W+VYV +SL+ +Y+R+ + +A LF + ++ SWNA+I+G+ + ++AL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
T S LR T S+ +A G +G +H++ IK G + FV N L+D+Y
Sbjct: 237 -TLSNGLRAMDSVT---VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292
Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
A+ G + D +KVF+R+ RD++SWNS++ + + F++M + I P+ +T +
Sbjct: 293 AEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLI 352
Query: 301 CVLTACSHAG 310
+ + S G
Sbjct: 353 SLASILSQLG 362
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 14/290 (4%)
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSE-M 186
NV + + L+++Y + A F +++++ +WN +I+G+ R + +R FS M
Sbjct: 85 NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144
Query: 187 LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSI 246
L G P + ++ SV L + ++ G +H +K G +V +L+ +Y++ ++
Sbjct: 145 LSSGLTPDYRTFPSV---LKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAV 201
Query: 247 EDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI-APNQVTFLCVLTA 305
+A +F+ + RD+ SWN+M++G Q G K + L NG+ A + VT + +L+A
Sbjct: 202 GNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLSA 256
Query: 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAV 365
C+ AG + G + KHG+E E +DL G L K M + +
Sbjct: 257 CTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS- 315
Query: 366 WGALLGACRMHKNV--ELGAYAAERIFELDPHDSGPHILLANIYASAGRL 413
W +++ A +++ + + R+ + P D I LA+I + G +
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQP-DCLTLISLASILSQLGDI 364
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
Query: 201 VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD 260
V T +L+ K +HA ++ S + LV++Y G++ A F+ + RD
Sbjct: 57 VHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRD 116
Query: 261 VVSWNSMLTGCAQHGLGKATVRWFEK-MLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319
V +WN M++G + G +R F ML +G+ P+ TF VL AC + +G
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIH 173
Query: 320 ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALL-GACR 374
L K G + + + L R + A EMP+ + W A++ G C+
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS-WNAMISGYCQ 228
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/553 (42%), Positives = 351/553 (63%), Gaps = 1/553 (0%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+H +++ S + N ++N Y+K ++R+ F++ P K TW+++IS ++QN+
Sbjct: 37 LHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNEL 96
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
P ++ +M+ L+P+ L S K+ + D GR VH +K GYD +V+VGS
Sbjct: 97 PWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCD-IGRSVHCLSMKTGYDADVFVGS 155
Query: 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193
SL+DMYA+ ++ A +F + +N V+W+ ++ G+A+ E E+AL F E L E
Sbjct: 156 SLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAV 215
Query: 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF 253
+S+SSV + A++ LE G+ +H IKS +FVG++LV +Y+K G E A +VF
Sbjct: 216 NDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVF 275
Query: 254 NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313
N + +++ WN+ML AQH + + F++M +G+ PN +TFL VL ACSHAGL+D
Sbjct: 276 NEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVD 335
Query: 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGAC 373
EG+ YF MK+ +EP + HY + VD+LGRAG L AL+ I MPI+PT +VWGALL +C
Sbjct: 336 EGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSC 395
Query: 374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPA 433
+HKN EL A+AA+++FEL P SG HI L+N YA+ GR DAA+ARK++++ G KKE
Sbjct: 396 TVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETG 455
Query: 434 CSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREA 493
SWVE +N VH F A + H + I++K E+ E++++ GY+ D+S+VL D E+
Sbjct: 456 LSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQ 515
Query: 494 KLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFH 553
++ HSE+LA+AF LI+ P I + KN+RVCGDCH+A KF S R IIVRD NRFH
Sbjct: 516 TIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFH 575
Query: 554 HFRDGFCSCGDYW 566
F DG CSC DYW
Sbjct: 576 RFEDGKCSCNDYW 588
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 151/274 (55%), Gaps = 2/274 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L + R VH + + + D+ + +++++ YAKCG + ARK+FDEMP +++VTW
Sbjct: 126 CAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTW 185
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
+ ++ GY+Q + E A+ LF + L L N ++ SSV+ A +T + GRQ+H +
Sbjct: 186 SGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVC-ANSTLLELGRQIHGLSI 244
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K +D + +VGSSL+ +Y++ + A+ +F + KN WNA++ +A+ S +K +
Sbjct: 245 KSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIE 304
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F M G +P ++ +V A + G +++G++ + +S + +LVDM
Sbjct: 305 LFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLG 364
Query: 242 KSGSIEDA-EKVFNRLLKRDVVSWNSMLTGCAQH 274
++G +++A E + N + W ++LT C H
Sbjct: 365 RAGRLQEALEVITNMPIDPTESVWGALLTSCTVH 398
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 132/268 (49%), Gaps = 1/268 (0%)
Query: 113 GRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHAR 172
G Q+H + +K G V ++L++ Y++ D+ F K+ +W+++I+ A+
Sbjct: 34 GLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQ 93
Query: 173 KSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFV 232
+L +M+ P S + A + G+ VH +K+G FV
Sbjct: 94 NELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFV 153
Query: 233 GNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI 292
G++LVDMYAK G I A K+F+ + +R+VV+W+ M+ G AQ G + + F++ L +
Sbjct: 154 GSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENL 213
Query: 293 APNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALK 352
A N +F V++ C+++ LL+ G+ L K + + V L + G+ + A +
Sbjct: 214 AVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQ 273
Query: 353 FIREMPIEPTAAVWGALLGACRMHKNVE 380
E+P++ +W A+L A H + +
Sbjct: 274 VFNEVPVK-NLGIWNAMLKAYAQHSHTQ 300
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 4/204 (1%)
Query: 191 FEPTHFSYSSVFTAL---ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
F P H +Y+ + L A T S +G +H +V+KSG L+ V N L++ Y+KS
Sbjct: 9 FVPCH-NYNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPF 67
Query: 248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
D+ + F ++ +W+S+++ AQ+ L ++ + +KM+ + P+ +C+
Sbjct: 68 DSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCA 127
Query: 308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWG 367
D G+ L K G + + + VD+ + G + A K EMP G
Sbjct: 128 ILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSG 187
Query: 368 ALLGACRMHKNVELGAYAAERIFE 391
+ G +M +N E E +FE
Sbjct: 188 MMYGYAQMGENEEALWLFKEALFE 211
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/563 (39%), Positives = 353/563 (62%), Gaps = 5/563 (0%)
Query: 8 LKEARIVHAH-ILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALIS 66
++ R+ AH + + D+ ++ YA G ++ A+KLFDE+PVKD+V+W A+IS
Sbjct: 180 VQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMIS 239
Query: 67 GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYD 126
GY++ + A+ LF M++ ++P++ T+ +V+ A + + GRQVH + +G+
Sbjct: 240 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE-LGRQVHLWIDDHGFG 298
Query: 127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEM 186
N+ + ++L+D+Y++ +++ A LF L K+ +SWN LI G+ + ++AL F EM
Sbjct: 299 SNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM 358
Query: 187 LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK--SGGQLVAFVGNTLVDMYAKSG 244
LR G P + S+ A A G+++ G+W+H ++ K G + + +L+DMYAK G
Sbjct: 359 LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCG 418
Query: 245 SIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304
IE A +VFN +L + + SWN+M+ G A HG A+ F +M + GI P+ +TF+ +L+
Sbjct: 419 DIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLS 478
Query: 305 ACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTA 363
ACSH+G+LD G+ F M + + + P+ HY +DLLG +GL A + I M +EP
Sbjct: 479 ACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG 538
Query: 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423
+W +LL AC+MH NVELG AE + +++P + G ++LL+NIYASAGR N+ A+ R ++
Sbjct: 539 VIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALL 598
Query: 424 KESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVL 483
+ G+KK P CS +E + VH F+ D HP+ I+ E+ +++ G+VPD+S VL
Sbjct: 599 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVL 658
Query: 484 SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVERE 543
+++ +E L+ HSEKLA+AF LIST PG+ + I KN+RVC +CH A K SK+ +RE
Sbjct: 659 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 718
Query: 544 IIVRDTNRFHHFRDGFCSCGDYW 566
II RD RFHHFRDG CSC DYW
Sbjct: 719 IIARDRTRFHHFRDGVCSCNDYW 741
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 211/431 (48%), Gaps = 44/431 (10%)
Query: 6 KKLKEARIVHAHILGSAFKN-----DIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
K L+ RI+HA ++ N ++ IL+ + + L A +F + +++
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEG--LPYAISVFKTIQEPNLLI 101
Query: 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
W + G++ + P +A+ L+ M+ LGL PN +T VLK S A + K G+Q+H
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLK-SCAKSKAFKEGQQIHGHV 160
Query: 121 LKYGYDWNVYVGSSLLDMYAR----------FDQ---------------------MDDAW 149
LK G D ++YV +SL+ MY + FD+ +++A
Sbjct: 161 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQ 220
Query: 150 FLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG 209
LF + K+ VSWNA+I+G+A ++AL F +M++ P + +V +A A +G
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 280
Query: 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLT 269
S+E G+ VH + G + N L+D+Y+K G +E A +F RL +DV+SWN+++
Sbjct: 281 SIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIG 340
Query: 270 GCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH--GV 327
G L K + F++MLR+G PN VT L +L AC+H G +D G+ + K GV
Sbjct: 341 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGV 400
Query: 328 EPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH--KNVELGAYA 385
+ + +D+ + G ++ A + + + + + W A++ MH + ++
Sbjct: 401 TNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDLFS 459
Query: 386 AERIFELDPHD 396
R + P D
Sbjct: 460 RMRKIGIQPDD 470
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 170/337 (50%), Gaps = 18/337 (5%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C ++ R VH I F +++ + N +++ Y+KCG L+ A LF+ +P KD+++W
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG-AGATDDKFGRQVHAFC 120
LI GY+ + + A++LF +MLR G PN T+ S+L A GA D GR +H +
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID--IGRWIHVYI 393
Query: 121 LKY--GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEK 178
K G + +SL+DMYA+ ++ A +F ++ K+ SWNA+I G A +
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 179 ALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGN---- 234
+ FS M + G +P ++ + +A + +G L+ G+ H+ ++ Q
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR----HIFRTMTQDYKMTPKLEHY 509
Query: 235 -TLVDMYAKSGSIEDAEKVFNRLLKR-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI 292
++D+ SG ++AE++ N + D V W S+L C HG + + E +++ I
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK--I 567
Query: 293 AP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE 328
P N +++ + + AG +E AL+ G++
Sbjct: 568 EPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 102/234 (43%), Gaps = 9/234 (3%)
Query: 202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED---AEKVFNRLLK 258
+ L + +L+ + +HA +IK G + + L++ S E A VF + +
Sbjct: 37 LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96
Query: 259 RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGY 318
+++ WN+M G A + ++ + M+ G+ PN TF VL +C+ + EGQ
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 319 FALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKN 378
+ K G + + + + + + + G L+ A K + P + + AL+
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS-YTALIKGYASRGY 215
Query: 379 VELGAYAAERIFELDP-HDSGPHILLANIYASAGRLNDAARARKMMKESGVKKE 431
+E A+++F+ P D + + YA G +A K M ++ V+ +
Sbjct: 216 IE----NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD 265
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/586 (39%), Positives = 357/586 (60%), Gaps = 28/586 (4%)
Query: 2 CTHLKKLKEARIVHAHIL--GSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMV 59
C+HL+ L+ + +HA+ L GS +N + + +++ Y C + R++FD M + +
Sbjct: 312 CSHLEMLRTGKELHAYALKNGSLDENSF-VGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 370
Query: 60 TWTALISGYSQNDQPENAIILFSQMLR-LGLKPNQFTLSSVLKA---SGAGATDDKFGRQ 115
W A+I+GYSQN+ + A++LF M GL N T++ V+ A SGA F R+
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA------FSRK 424
Query: 116 --VHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARK 173
+H F +K G D + +V ++L+DMY+R ++D A +F +E ++ V+WN +I G+
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484
Query: 174 SEGEKALRTFSEML-----------REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVI 222
E AL +M R +P + ++ + A+ +L +GK +HA+ I
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544
Query: 223 KSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVR 282
K+ VG+ LVDMYAK G ++ + KVF+++ +++V++WN ++ HG G+ +
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604
Query: 283 WFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLL 341
M+ G+ PN+VTF+ V ACSH+G++DEG F +MK +GVEP HY VDLL
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664
Query: 342 GRAGLLDRALKFIREMPIE-PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400
GRAG + A + + MP + A W +LLGA R+H N+E+G AA+ + +L+P+ + +
Sbjct: 665 GRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHY 724
Query: 401 ILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIH 460
+LLANIY+SAG + A R+ MKE GV+KEP CSW+E + VH FVA D +HPQ +
Sbjct: 725 VLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLS 784
Query: 461 KKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIK 520
+ E++++ GYVPD+S VL ++ E+E L HSEKLA+AF +++T PG+ I +
Sbjct: 785 GYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVA 844
Query: 521 KNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
KN+RVC DCH A KF SK+V+REII+RD RFH F++G CSCGDYW
Sbjct: 845 KNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 184/358 (51%), Gaps = 6/358 (1%)
Query: 5 LKKLKEARIVHAHILGSAFKND-IAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTA 63
L+ ++ + +HAH+ + D + + NT++N Y KCG K+FD + ++ V+W +
Sbjct: 110 LQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNS 169
Query: 64 LISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKF--GRQVHAFCL 121
LIS ++ E A+ F ML ++P+ FTL SV+ A + G+QVHA+ L
Sbjct: 170 LISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGL 229
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
+ G + N ++ ++L+ MY + ++ + L + ++ V+WN +++ + + +AL
Sbjct: 230 RKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALE 288
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGG-QLVAFVGNTLVDMY 240
EM+ EG EP F+ SSV A + L GK +HA+ +K+G +FVG+ LVDMY
Sbjct: 289 YLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348
Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN-GIAPNQVTF 299
+ +VF+ + R + WN+M+ G +Q+ K + F M + G+ N T
Sbjct: 349 CNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTM 408
Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357
V+ AC +G + + K G++ + T +D+ R G +D A++ +M
Sbjct: 409 AGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 146/270 (54%), Gaps = 6/270 (2%)
Query: 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
W L+ +++ A++ + M+ LG+KP+ + ++LKA A D + G+Q+HA
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAV-ADLQDMELGKQIHAHV 123
Query: 121 LKYGYDWN-VYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
K+GY + V V ++L+++Y + + +F + +N+VSWN+LI+ + E A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183
Query: 180 LRTFSEMLREGFEPTHFSYSSVFTA---LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
L F ML E EP+ F+ SV TA L L GK VHA+ ++ G +L +F+ NTL
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTL 242
Query: 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
V MY K G + ++ + RD+V+WN++L+ Q+ + + +M+ G+ P++
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302
Query: 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHG 326
T VL ACSH +L G+ A K+G
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNG 332
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 43/272 (15%)
Query: 156 ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGK 215
+S++ W L+ R + +A+ T+ +M+ G +P ++++ ++ A+A +E GK
Sbjct: 58 QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGK 117
Query: 216 WVHAHVIKSG-GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH 274
+HAHV K G G V NTLV++Y K G KVF+R+ +R+ VSWNS+++
Sbjct: 118 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 177
Query: 275 GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHY 334
+ + F ML + P+ T + V+TACS+ + EG + +G+ E +
Sbjct: 178 EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP-MPEGLMMGKQVHAYGLRKGELNS 236
Query: 335 V---TFVDLLGRAGLLD-------------------------------RALKFIREMP-- 358
T V + G+ G L AL+++REM
Sbjct: 237 FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296
Query: 359 -IEPTAAVWGALLGACR----MHKNVELGAYA 385
+EP ++L AC + EL AYA
Sbjct: 297 GVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/582 (38%), Positives = 351/582 (60%), Gaps = 25/582 (4%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C+ L + + H +++DI + + ++ Y+ CG L++ARK+FDE+P +++V+W
Sbjct: 86 CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145
Query: 62 TALISGYSQNDQPENAIILFSQML-------------RLGLKPNQFTLSSVLKASGAGAT 108
T++I GY N +A+ LF +L +GL +S+ + G T
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVS---VISACSRVPAKGLT 202
Query: 109 DDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQ--MDDAWFLFTALESKNEVSWNAL 166
+ +H+F +K G+D V VG++LLD YA+ + + A +F + K+ VS+N++
Sbjct: 203 E-----SIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSI 257
Query: 167 IAGHARKSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALASTGSLEQGKWVHAHVIKSG 225
++ +A+ +A F +++ + + S+V A++ +G+L GK +H VI+ G
Sbjct: 258 MSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMG 317
Query: 226 GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFE 285
+ VG +++DMY K G +E A K F+R+ ++V SW +M+ G HG + F
Sbjct: 318 LEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFP 377
Query: 286 KMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDLLGRA 344
M+ +G+ PN +TF+ VL ACSHAGL EG +F MK + GVEP HY VDLLGRA
Sbjct: 378 AMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRA 437
Query: 345 GLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404
G L +A I+ M ++P + +W +LL ACR+HKNVEL + R+FELD + G ++LL+
Sbjct: 438 GFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLS 497
Query: 405 NIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWR 464
+IYA AGR D R R +MK G+ K P S +E VH+F+ D+ HPQR I++
Sbjct: 498 HIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLA 557
Query: 465 EISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIR 524
E++ K+ + GYV ++S V D++E+E L+VHSEKLA+AF +++T PGST+++ KN+R
Sbjct: 558 ELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLR 617
Query: 525 VCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
VC DCH+ K SK+V+RE +VRD RFHHF+DG CSCGDYW
Sbjct: 618 VCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 151 LFTALESKNEV-SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG 209
LF K +V SWN++IA AR + +AL FS M + PT S+ A +S
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLT 269
+ GK H G Q FV + L+ MY+ G +EDA KVF+ + KR++VSW SM+
Sbjct: 91 DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150
Query: 270 GCAQHGLGKATVRWFEKMLRNGIAPNQVTFL------CVLTACSHA-------------- 309
G +G V F+ +L + + FL V++ACS
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210
Query: 310 ------------GLLDE----GQGYFALMKK---HGVEPEEAHYVTFVDLLGRAGLLDRA 350
LLD G+G A+ +K V+ + Y + + + ++G+ + A
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270
Query: 351 LKFIREM----PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS---GPHILL 403
+ R + + A +L A + +G +++ + D G I+
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII- 329
Query: 404 ANIYASAGRLNDAARARKMMKESGVK 429
++Y GR+ A +A MK V+
Sbjct: 330 -DMYCKCGRVETARKAFDRMKNKNVR 354
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/598 (37%), Positives = 356/598 (59%), Gaps = 34/598 (5%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCL------------------ 43
C+ + L+E + VH HI S F I + N +L YAKCG L
Sbjct: 95 CSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSW 154
Query: 44 -------------DEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRL-GL 89
+EARKLFDEM KD +WTA+++GY + DQPE A++L+S M R+
Sbjct: 155 NVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS 214
Query: 90 KPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAW 149
+PN FT+S + A+ A + G+++H ++ G D + + SSL+DMY + +D+A
Sbjct: 215 RPNIFTVS-IAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEAR 273
Query: 150 FLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG 209
+F + K+ VSW ++I + + S + FSE++ P ++++ V A A
Sbjct: 274 NIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLT 333
Query: 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLT 269
+ E GK VH ++ + G +F ++LVDMY K G+IE A+ V + K D+VSW S++
Sbjct: 334 TEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIG 393
Query: 270 GCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVE 328
GCAQ+G +++F+ +L++G P+ VTF+ VL+AC+HAGL+++G +F ++ +KH +
Sbjct: 394 GCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLS 453
Query: 329 PEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAER 388
HY VDLL R+G ++ I EMP++P+ +W ++LG C + N++L AA+
Sbjct: 454 HTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQE 513
Query: 389 IFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVA 448
+F+++P + ++ +ANIYA+AG+ + + RK M+E GV K P SW E K H+F+A
Sbjct: 514 LFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIA 573
Query: 449 NDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFAL 508
D +HP I + RE+ +K+K+ GYVP +S VL + +++E L HSEKLA+AFA+
Sbjct: 574 ADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAI 633
Query: 509 ISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
+ST G+ I + KN+R C DCH A KF S + +R+I VRD+ RFH F +G CSCGDYW
Sbjct: 634 LSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 34/323 (10%)
Query: 83 QMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARF 142
Q+L KP T ++++ ++ G++VH G+ + + + LL MYA+
Sbjct: 75 QLLGRAKKPPASTYCNLIQVCSQTRALEE-GKKVHEHIRTSGFVPGIVIWNRLLRMYAKC 133
Query: 143 DQMDDAWFLFTALESKNEVSWNALIAGHA------------------------------- 171
+ DA +F + +++ SWN ++ G+A
Sbjct: 134 GSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYV 193
Query: 172 RKSEGEKALRTFSEMLR-EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA 230
+K + E+AL +S M R P F+ S A A+ + +GK +H H++++G
Sbjct: 194 KKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDE 253
Query: 231 FVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN 290
+ ++L+DMY K G I++A +F++++++DVVSW SM+ + + F +++ +
Sbjct: 254 VLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGS 313
Query: 291 GIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRA 350
PN+ TF VL AC+ + G+ M + G +P + VD+ + G ++ A
Sbjct: 314 CERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESA 373
Query: 351 LKFIREMPIEPTAAVWGALLGAC 373
+ P +P W +L+G C
Sbjct: 374 KHVVDGCP-KPDLVSWTSLIGGC 395
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 33/227 (14%)
Query: 176 GEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNT 235
G+K LR ++L +P +Y ++ + T +LE+GK VH H+ SG + N
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125
Query: 236 LVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN----- 290
L+ MYAK GS+ DA KVF+ + RD+ SWN M+ G A+ GL + + F++M
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSW 185
Query: 291 ---------------------------GIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK 323
PN T + A + + G+ +
Sbjct: 186 TAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIV 245
Query: 324 KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALL 370
+ G++ +E + + +D+ G+ G +D A + I + +E W +++
Sbjct: 246 RAGLDSDEVLWSSLMDMYGKCGCIDEA-RNIFDKIVEKDVVSWTSMI 291
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/565 (39%), Positives = 342/565 (60%), Gaps = 10/565 (1%)
Query: 7 KLKEARI-VHAHILGS---AFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWT 62
+L+E R+ + H L + + +D + I + Y+KCG + LF E D+V +
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFI-SLYSKCGKIKMGSALFREFRKPDIVAYN 291
Query: 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLK 122
A+I GY+ N + E ++ LF +++ G + TL S++ SG +H +CLK
Sbjct: 292 AMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSG----HLMLIYAIHGYCLK 347
Query: 123 YGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRT 182
+ + V ++L +Y++ ++++ A LF K+ SWNA+I+G+ + E A+
Sbjct: 348 SNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISL 407
Query: 183 FSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK 242
F EM + F P + + + +A A G+L GKWVH V + + +V L+ MYAK
Sbjct: 408 FREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAK 467
Query: 243 SGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCV 302
GSI +A ++F+ + K++ V+WN+M++G HG G+ + F +ML +GI P VTFLCV
Sbjct: 468 CGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCV 527
Query: 303 LTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361
L ACSHAGL+ EG F +++ ++G EP HY VD+LGRAG L RAL+FI M IEP
Sbjct: 528 LYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEP 587
Query: 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK 421
++VW LLGACR+HK+ L +E++FELDP + G H+LL+NI+++ AA R+
Sbjct: 588 GSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQ 647
Query: 422 MMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSH 481
K+ + K P + +E H+F + D +HPQ I++K ++ K+++ GY P++
Sbjct: 648 TAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETEL 707
Query: 482 VLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVE 541
L +++ERE ++VHSE+LA+AF LI+T PG+ I I KN+RVC DCH+ K SK+ E
Sbjct: 708 ALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITE 767
Query: 542 REIIVRDTNRFHHFRDGFCSCGDYW 566
R I+VRD NRFHHF+DG CSCGDYW
Sbjct: 768 RVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 99/449 (22%), Positives = 206/449 (45%), Gaps = 41/449 (9%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
HA I+ F+NDI++ + + G + AR +F + D+ + L+ G+S N+
Sbjct: 39 THAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNES 98
Query: 74 PENAIILFSQMLR-LGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVG 132
P +++ +F+ + + LKPN T + + A+ +G DD+ GR +H + G D + +G
Sbjct: 99 PHSSLSVFAHLRKSTDLKPNSSTYAFAISAA-SGFRDDRAGRVIHGQAVVDGCDSELLLG 157
Query: 133 SSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFE 192
S+++ MY +F +++DA +F + K+ + WN +I+G+ + ++++ F +++ E
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESC- 216
Query: 193 PTHFSYSSVFTALASTGSLEQ---GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDA 249
T +++ L + L++ G +H+ K+G +V + +Y+K G I+
Sbjct: 217 -TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMG 275
Query: 250 EKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA 309
+F K D+V++N+M+ G +G + ++ F++++ +G T + ++ H
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335
Query: 310 GLLDEGQGY-----------------FALMKKHGVE---------PEEA--HYVTFVDLL 341
L+ GY K + +E PE++ + +
Sbjct: 336 MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395
Query: 342 GRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398
+ GL + A+ REM P +L AC + LG + + + D +S
Sbjct: 396 TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD-FESS 454
Query: 399 PHI--LLANIYASAGRLNDAARARKMMKE 425
++ L +YA G + +A R +M +
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTK 483
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 11/211 (5%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L L + VH + + F++ I + ++ YAKCG + EAR+LFD M K+ VTW
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTW 489
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGAT---DDKFGRQVH 117
+ISGY + Q + A+ +F +ML G+ P T VL A S AG D+ F +H
Sbjct: 490 NTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIH 549
Query: 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVS-WNALIAGHARKSEG 176
+YG++ +V + ++D+ R + A A+ + S W L+ G R +
Sbjct: 550 ----RYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLL-GACRIHKD 604
Query: 177 EKALRTFSEMLREGFEPTHFSYSSVFTALAS 207
RT SE L E +P + Y + + + S
Sbjct: 605 TNLARTVSEKLFE-LDPDNVGYHVLLSNIHS 634
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/543 (41%), Positives = 332/543 (61%), Gaps = 5/543 (0%)
Query: 26 DIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQML 85
+ M N+++ CG +++A +LF M KD V+W A+I G +QN + AI F +M
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMK 262
Query: 86 RLGLKPNQFTLSSVLKASGA-GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQ 144
GLK +Q+ SVL A G GA ++ G+Q+HA ++ + ++YVGS+L+DMY +
Sbjct: 263 VQGLKMDQYPFGSVLPACGGLGAINE--GKQIHACIIRTNFQDHIYVGSALIDMYCKCKC 320
Query: 145 MDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204
+ A +F ++ KN VSW A++ G+ + E+A++ F +M R G +P H++ +A
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISA 380
Query: 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSW 264
A+ SLE+G H I SG V N+LV +Y K G I+D+ ++FN + RD VSW
Sbjct: 381 CANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSW 440
Query: 265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALM-K 323
+M++ AQ G T++ F+KM+++G+ P+ VT V++ACS AGL+++GQ YF LM
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTS 500
Query: 324 KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGA 383
++G+ P HY +DL R+G L+ A++FI MP P A W LL ACR N+E+G
Sbjct: 501 EYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGK 560
Query: 384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAV 443
+AAE + ELDPH + LL++IYAS G+ + A+ R+ M+E VKKEP SW++ K +
Sbjct: 561 WAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKL 620
Query: 444 HMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLA 503
H F A+D++ P I+ K E++ KI GY PD+S V ++ + L HSE+LA
Sbjct: 621 HSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLA 680
Query: 504 LAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCG 563
+AF LI P G I + KN+RVC DCH+A K S V REI+VRD RFH F+DG CSCG
Sbjct: 681 IAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCG 740
Query: 564 DYW 566
D+W
Sbjct: 741 DFW 743
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 41/377 (10%)
Query: 31 NTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLR-LGL 89
N +L AY+K G + E F+++P +D VTW LI GYS + A+ ++ M+R
Sbjct: 76 NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSA 135
Query: 90 KPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAW 149
+ TL ++LK S + G+Q+H +K G++ + VGS LL MYA + DA
Sbjct: 136 NLTRVTLMTMLKLSSSNG-HVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAK 194
Query: 150 FLFTALESKN------------------------------EVSWNALIAGHARKSEGEKA 179
+F L+ +N VSW A+I G A+ ++A
Sbjct: 195 KVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEA 254
Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
+ F EM +G + + + SV A G++ +GK +HA +I++ Q +VG+ L+DM
Sbjct: 255 IECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDM 314
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
Y K + A+ VF+R+ +++VVSW +M+ G Q G + V+ F M R+GI P+ T
Sbjct: 315 YCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTL 374
Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVT----FVDLLGRAGLLDRALKFIR 355
++AC++ L+EG + G+ HYVT V L G+ G +D + +
Sbjct: 375 GQAISACANVSSLEEGSQFHGKAITSGL----IHYVTVSNSLVTLYGKCGDIDDSTRLFN 430
Query: 356 EMPIEPTAAVWGALLGA 372
EM + A W A++ A
Sbjct: 431 EMNVR-DAVSWTAMVSA 446
Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 154/277 (55%), Gaps = 5/277 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L + E + +HA I+ + F++ I + + +++ Y KC CL A+ +FD M K++V+W
Sbjct: 280 CGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 339
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
TA++ GY Q + E A+ +F M R G+ P+ +TL + A A + + G Q H +
Sbjct: 340 TAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC-ANVSSLEEGSQFHGKAI 398
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
G V V +SL+ +Y + +DD+ LF + ++ VSW A+++ +A+ + ++
Sbjct: 399 TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQ 458
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG--NTLVDM 239
F +M++ G +P + + V +A + G +E+G+ + ++ S +V +G + ++D+
Sbjct: 459 LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ-RYFKLMTSEYGIVPSIGHYSCMIDL 517
Query: 240 YAKSGSIEDAEKVFNRL-LKRDVVSWNSMLTGCAQHG 275
+++SG +E+A + N + D + W ++L+ C G
Sbjct: 518 FSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKG 554
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 156/389 (40%), Gaps = 79/389 (20%)
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
N++ ++LL Y++ + + F L ++ V+WN LI G++ A++ ++ M+
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 188 RE-GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSI 246
R+ T + ++ +S G + GK +H VIK G + VG+ L+ MYA G I
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 247 EDAEKVFN------------------------------RLLKRDVVSWNSMLTGCAQHGL 276
DA+KVF R +++D VSW +M+ G AQ+GL
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGL 250
Query: 277 GKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEG--------------------- 315
K + F +M G+ +Q F VL AC G ++EG
Sbjct: 251 AKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSA 310
Query: 316 --------------QGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP--- 358
+ F MK+ V A V + G+ G + A+K +M
Sbjct: 311 LIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGY----GQTGRAEEAVKIFLDMQRSG 366
Query: 359 IEPTAAVWGALLGACRMHKNVELGA-YAAERIFELDPHDSGPHILLANIYASAGRLNDAA 417
I+P G + AC ++E G+ + + I H L +Y G ++D+
Sbjct: 367 IDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDST 426
Query: 418 RARKMMKESGVKKEPACSWVETKNAVHMF 446
R + E V+ A SW +A F
Sbjct: 427 R---LFNEMNVRD--AVSWTAMVSAYAQF 450
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 116/225 (51%), Gaps = 7/225 (3%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C ++ L+E H + S + + + N+++ Y KCG +D++ +LF+EM V+D V+W
Sbjct: 381 CANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSW 440
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
TA++S Y+Q + I LF +M++ GLKP+ TL+ V+ A +K R
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTS 500
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALE-SKNEVSWNALIAGHARKSEGEKAL 180
+YG ++ S ++D+++R ++++A + + + W L++ K E
Sbjct: 501 EYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIG- 559
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSG 225
+ +E L E +P H + ++ +++ ++ +GKW ++ G
Sbjct: 560 KWAAESLIE-LDPHHPAGYTLLSSIYAS----KGKWDSVAQLRRG 599
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 13/219 (5%)
Query: 215 KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH 274
K +H ++I++ F+ N +V YA S A +VF+R+ + ++ SWN++L ++
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 275 GLGKATVRWFEKML-RNGIAPNQVTFLCVLTACSHAGLLDEG-QGYFALMKKHGVEPEEA 332
GL FEK+ R+G VT+ ++ S +GL+ + Y +M+
Sbjct: 86 GLISEMESTFEKLPDRDG-----VTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRV 140
Query: 333 HYVTFVDLLGRAGLLDRALKF---IREMPIEPTAAVWGALLGACRMHKNVELGAYAAERI 389
+T + L G + + + ++ E V LL M+ NV + A +
Sbjct: 141 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL---YMYANVGCISDAKKVF 197
Query: 390 FELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428
+ LD ++ + L + G + DA + + M++ V
Sbjct: 198 YGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSV 236
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/567 (37%), Positives = 350/567 (61%), Gaps = 3/567 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + + R VH+ + + F + NT+L+ Y+KCG LD A+ +F EM + +V++
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 365
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
T++I+GY++ A+ LF +M G+ P+ +T+++VL D+ G++VH +
Sbjct: 366 TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE-GKRVHEWIK 424
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
+ ++++V ++L+DMYA+ M +A +F+ + K+ +SWN +I G+++ +AL
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 484
Query: 182 TFSEMLREG-FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
F+ +L E F P + + V A AS + ++G+ +H +++++G V N+LVDMY
Sbjct: 485 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMY 544
Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
AK G++ A +F+ + +D+VSW M+ G HG GK + F +M + GI ++++F+
Sbjct: 545 AKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFV 604
Query: 301 CVLTACSHAGLLDEGQGYFALMKKH-GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
+L ACSH+GL+DEG +F +M+ +EP HY VD+L R G L +A +FI MPI
Sbjct: 605 SLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPI 664
Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
P A +WGALL CR+H +V+L AE++FEL+P ++G ++L+ANIYA A + R
Sbjct: 665 PPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRL 724
Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
RK + + G++K P CSW+E K V++FVA D ++P+ I R++ ++ + GY P +
Sbjct: 725 RKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLT 784
Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
+ L A++ E+E L HSEKLA+A +IS+ G I + KN+RVCGDCH KF SK+
Sbjct: 785 KYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKL 844
Query: 540 VEREIIVRDTNRFHHFRDGFCSCGDYW 566
REI++RD+NRFH F+DG CSC +W
Sbjct: 845 TRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 199/378 (52%), Gaps = 9/378 (2%)
Query: 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWT 62
+ L+ + +H IL S F ++ N+++ Y K +D ARK+FDEM +D+++W
Sbjct: 206 SSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWN 265
Query: 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDK---FGRQVHAF 119
++I+GY N E + +F QML G++ + T+ SV AG D + GR VH+
Sbjct: 266 SIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF----AGCADSRLISLGRAVHSI 321
Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
+K + ++LLDMY++ +D A +F + ++ VS+ ++IAG+AR+ +A
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEA 381
Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
++ F EM EG P ++ ++V A L++GK VH + ++ FV N L+DM
Sbjct: 382 VKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDM 441
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQVT 298
YAK GS+++AE VF+ + +D++SWN+++ G +++ + F +L +P++ T
Sbjct: 442 YAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 501
Query: 299 FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP 358
CVL AC+ D+G+ + ++G + + VD+ + G L A ++
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA 561
Query: 359 IEPTAAVWGALLGACRMH 376
+ + W ++ MH
Sbjct: 562 SKDLVS-WTVMIAGYGMH 578
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 188/371 (50%), Gaps = 2/371 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C K LK+ + V I G+ F D + + + Y CG L EA ++FDE+ ++ + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFW 163
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
L++ +++ +I LF +M+ G++ + +T S V K S + G Q+H F L
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSK-SFSSLRSVHGGEQLHGFIL 222
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K G+ VG+SL+ Y + ++D A +F + ++ +SWN++I G+ EK L
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F +ML G E + SVF A + + G+ VH+ +K+ NTL+DMY+
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K G ++ A+ VF + R VVS+ SM+ G A+ GL V+ FE+M GI+P+ T
Sbjct: 343 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402
Query: 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361
VL C+ LLDEG+ +K++ + + +D+ + G + A EM ++
Sbjct: 403 VLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKD 462
Query: 362 TAAVWGALLGA 372
+ W ++G
Sbjct: 463 IIS-WNTIIGG 472
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 165/353 (46%), Gaps = 12/353 (3%)
Query: 68 YSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDW 127
+ ++ ENA+ L + + P TL SVL+ A + K G++V F G+
Sbjct: 71 FCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLC-ADSKSLKDGKEVDNFIRGNGFVI 127
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
+ +GS L MY + +A +F ++ + + WN L+ A+ + ++ F +M+
Sbjct: 128 DSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM 187
Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
G E +++S V + +S S+ G+ +H ++KSG VGN+LV Y K+ ++
Sbjct: 188 SSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVD 247
Query: 248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
A KVF+ + +RDV+SWNS++ G +GL + + F +ML +GI + T + V C+
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307
Query: 308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWG 367
+ L+ G+ ++ K E+ T +D+ + G LD A REM +
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367
Query: 368 ALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
+ G R L A + E++ P ++Y LN AR R
Sbjct: 368 MIAGYAREG----LAGEAVKLFEEMEEEGISP-----DVYTVTAVLNCCARYR 411
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/603 (38%), Positives = 353/603 (58%), Gaps = 42/603 (6%)
Query: 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILN---AYAKCGCLDEARKLFDEMPVKD 57
+C+ ++LK+ +HA +L + D L+ + L A+ +FD D
Sbjct: 23 RCSKQEELKQ---IHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPD 79
Query: 58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGATDDKFGRQV 116
W +I G+S +D+PE +++L+ +ML N +T S+LKA S A ++ Q+
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEET--TQI 137
Query: 117 HAFCLKYGYDWNVYVGSSLLDMYA----------RFD---------------------QM 145
HA K GY+ +VY +SL++ YA FD +M
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197
Query: 146 DDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205
D A LF + KN +SW +I+G+ + ++AL+ F EM EP + S ++ +A
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257
Query: 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWN 265
A G+LEQGKW+H+++ K+ ++ + +G L+DMYAK G +E+A +VF + K+ V +W
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317
Query: 266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKK- 324
++++G A HG G+ + F +M + GI PN +TF VLTACS+ GL++EG+ F M++
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377
Query: 325 HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAY 384
+ ++P HY VDLLGRAGLLD A +FI+EMP++P A +WGALL ACR+HKN+ELG
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437
Query: 385 AAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVH 444
E + +DP+ G ++ ANI+A + + AA R++MKE GV K P CS + + H
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497
Query: 445 MFVANDDAHPQRAMIHKKWREISEKIKQIGYVPD-SSHVLSYADQQEREAKLQVHSEKLA 503
F+A D +HP+ I KWR + K+++ GYVP+ +L D EREA + HSEKLA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557
Query: 504 LAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCG 563
+ + LI T PG+ I I KN+RVC DCH K SK+ +R+I++RD RFHHFRDG CSCG
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCG 617
Query: 564 DYW 566
DYW
Sbjct: 618 DYW 620
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/556 (41%), Positives = 333/556 (59%), Gaps = 4/556 (0%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+HA + D+ + + + Y K D+ARKLFDE+P +++ TW A IS + +
Sbjct: 130 IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGR 189
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
P AI F + R+ PN T + L A + G Q+H L+ G+D +V V +
Sbjct: 190 PREAIEAFIEFRRIDGHPNSITFCAFLNAC-SDWLHLNLGMQLHGLVLRSGFDTDVSVCN 248
Query: 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193
L+D Y + Q+ + +FT + +KN VSW +L+A + + E EKA + ++ E
Sbjct: 249 GLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVET 308
Query: 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF 253
+ F SSV +A A LE G+ +HAH +K+ + FVG+ LVDMY K G IED+E+ F
Sbjct: 309 SDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAF 368
Query: 254 NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP--NQVTFLCVLTACSHAGL 311
+ + ++++V+ NS++ G A G + FE+M G P N +TF+ +L+ACS AG
Sbjct: 369 DEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGA 428
Query: 312 LDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALL 370
++ G F M+ +G+EP HY VD+LGRAG+++RA +FI++MPI+PT +VWGAL
Sbjct: 429 VENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQ 488
Query: 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKK 430
ACRMH +LG AAE +F+LDP DSG H+LL+N +A+AGR +A R+ +K G+KK
Sbjct: 489 NACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKK 548
Query: 431 EPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQE 490
SW+ KN VH F A D +H I ++ +++ GY PD L +++E
Sbjct: 549 GAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEE 608
Query: 491 REAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTN 550
+ A++ HSEKLALAF L+S P I I KN+R+CGDCHS FKF S V+REIIVRD N
Sbjct: 609 KAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNN 668
Query: 551 RFHHFRDGFCSCGDYW 566
RFH F+DG CSC DYW
Sbjct: 669 RFHRFKDGICSCKDYW 684
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 182/394 (46%), Gaps = 8/394 (2%)
Query: 8 LKEARIVHAHILGSAFKNDIA-MQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALIS 66
++ R+VHA I+ + + N ++N Y+K + AR + P +++V+WT+LIS
Sbjct: 22 MRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLIS 81
Query: 67 GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYD 126
G +QN A++ F +M R G+ PN FT KA A G+Q+HA +K G
Sbjct: 82 GLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAV-ASLRLPVTGKQIHALAVKCGRI 140
Query: 127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEM 186
+V+VG S DMY + DDA LF + +N +WNA I+ +A+ F E
Sbjct: 141 LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEF 200
Query: 187 LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSI 246
R P ++ + A + L G +H V++SG V N L+D Y K I
Sbjct: 201 RRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQI 260
Query: 247 EDAEKVFNRLLKRDVVSWNSMLTGCAQ-HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305
+E +F + ++ VSW S++ Q H KA+V + + ++ + + VL+A
Sbjct: 261 RSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYL-RSRKDIVETSDFMISSVLSA 319
Query: 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAV 365
C+ L+ G+ A K VE VD+ G+ G ++ + + EMP E
Sbjct: 320 CAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVT 378
Query: 366 WGALLGACRMHKNVELGAYAAERIFELDPHDSGP 399
+L+G V++ E E+ P GP
Sbjct: 379 RNSLIGGYAHQGQVDMALALFE---EMAPRGCGP 409
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 149/278 (53%), Gaps = 5/278 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C+ L +H +L S F D+++ N +++ Y KC + + +F EM K+ V+W
Sbjct: 219 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSW 278
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
+L++ Y QN + E A +L+ + + ++ + F +SSVL A AG + GR +HA +
Sbjct: 279 CSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSAC-AGMAGLELGRSIHAHAV 337
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K + ++VGS+L+DMY + ++D+ F + KN V+ N+LI G+A + + + AL
Sbjct: 338 KACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALA 397
Query: 182 TFSEMLREGFEPT--HFSYSSVFTALASTGSLEQGKWVHAHVIKSGG-QLVAFVGNTLVD 238
F EM G PT + ++ S+ +A + G++E G + + + G + A + +VD
Sbjct: 398 LFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVD 457
Query: 239 MYAKSGSIEDAEKVFNRLLKRDVVS-WNSMLTGCAQHG 275
M ++G +E A + ++ + +S W ++ C HG
Sbjct: 458 MLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHG 495
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 133/275 (48%), Gaps = 2/275 (0%)
Query: 99 VLKASGAGATDDKFGRQVHAFCLK-YGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES 157
+L + A+ + GR VHA +K ++ + L++MY++ D + A + +
Sbjct: 11 LLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPA 70
Query: 158 KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV 217
+N VSW +LI+G A+ AL F EM REG P F++ F A+AS GK +
Sbjct: 71 RNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQI 130
Query: 218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLG 277
HA +K G L FVG + DMY K+ +DA K+F+ + +R++ +WN+ ++ G
Sbjct: 131 HALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRP 190
Query: 278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF 337
+ + F + R PN +TF L ACS L+ G L+ + G + + +
Sbjct: 191 REAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGL 250
Query: 338 VDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
+D G+ + + EM + A W +L+ A
Sbjct: 251 IDFYGKCKQIRSSEIIFTEMGTK-NAVSWCSLVAA 284
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 19/230 (8%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + L+ R +HAH + + + I + + +++ Y KCGC++++ + FDEMP K++VT
Sbjct: 320 CAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTR 379
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGL--KPNQFTLSSVLKA-SGAGATDDKFGRQVHA 118
+LI GY+ Q + A+ LF +M G PN T S+L A S AGA ++ + +
Sbjct: 380 NSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGM-KIFDS 438
Query: 119 FCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVS-WNALIAGHARKSEGE 177
YG + S ++DM R ++ A+ + + +S W AL +A + G+
Sbjct: 439 MRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL--QNACRMHGK 496
Query: 178 KALRTFSEMLREGFEP----THFSYSSVFTALASTGSLEQGKWVHAHVIK 223
L + +P H S+ F A G+W A+ ++
Sbjct: 497 PQLGLLAAENLFKLDPKDSGNHVLLSNTFAA--------AGRWAEANTVR 538
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/598 (37%), Positives = 352/598 (58%), Gaps = 34/598 (5%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L+ L+ V+A I S + + M + +++ Y KC +D A++LFDE ++
Sbjct: 246 CAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLC 305
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
A+ S Y + A+ +F+ M+ G++P++ ++ S + +S + + +G+ H + L
Sbjct: 306 NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI-SSCSQLRNILWGKSCHGYVL 364
Query: 122 KYGYDWNVYVGSSLLDMYAR----------FDQM---------------------DDAWF 150
+ G++ + ++L+DMY + FD+M D AW
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424
Query: 151 LFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML-REGFEPTHFSYSSVFTALASTG 209
F + KN VSWN +I+G + S E+A+ F M +EG + S+ +A G
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
Query: 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLT 269
+L+ KW++ ++ K+G QL +G TLVDM+++ G E A +FN L RDV +W + +
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544
Query: 270 GCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQG-YFALMKKHGVE 328
A G + + F+ M+ G+ P+ V F+ LTACSH GL+ +G+ +++++K HGV
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604
Query: 329 PEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAER 388
PE+ HY VDLLGRAGLL+ A++ I +MP+EP +W +LL ACR+ NVE+ AYAAE+
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK 664
Query: 389 IFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVA 448
I L P +G ++LL+N+YASAGR ND A+ R MKE G++K P S ++ + H F +
Sbjct: 665 IQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTS 724
Query: 449 NDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFAL 508
D++HP+ I E+S++ +G+VPD S+VL D++E+ L HSEKLA+A+ L
Sbjct: 725 GDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGL 784
Query: 509 ISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
IS+ G+TI I KN+RVC DCHS KFASKV REII+RD NRFH+ R G CSCGD+W
Sbjct: 785 ISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 194/384 (50%), Gaps = 34/384 (8%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+H I+ + D+ +QN++++ YA+CG LD ARK+FDEM +++V+WT++I GY++ D
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 215
Query: 74 PENAIILFSQMLR-LGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVG 132
++A+ LF +M+R + PN T+ V+ A A D + G +V+AF G + N +
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISAC-AKLEDLETGEKVYAFIRNSGIEVNDLMV 274
Query: 133 SSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFE 192
S+L+DMY + + +D A LF + N NA+ + + R+ +AL F+ M+ G
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKV 252
P S S ++ + ++ GK H +V+++G + + N L+DMY K + A ++
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 253 FNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKM------------------------- 287
F+R+ + VV+WNS++ G ++G A FE M
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454
Query: 288 -------LRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL 340
+ G+ + VT + + +AC H G LD + + ++K+G++ + T VD+
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514
Query: 341 LGRAGLLDRALKFIREMPIEPTAA 364
R G + A+ + +A
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSA 538
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 191/401 (47%), Gaps = 19/401 (4%)
Query: 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGC---LDEARKLFDEM-PVKDMV 59
+ K + E ++ H + ND++ ++ + G L A+++F+
Sbjct: 41 NCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCF 100
Query: 60 TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFT----LSSVLKASGAGATDDKFGRQ 115
+ +LI GY+ + AI+LF +M+ G+ P+++T LS+ K+ G G Q
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGN-----GIQ 155
Query: 116 VHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSE 175
+H +K GY +++V +SL+ YA ++D A +F + +N VSW ++I G+AR+
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDF 215
Query: 176 GEKALRTFSEMLR-EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGN 234
+ A+ F M+R E P + V +A A LE G+ V+A + SG ++ + +
Sbjct: 216 AKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS 275
Query: 235 TLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP 294
LVDMY K +I+ A+++F+ ++ N+M + + GL + + F M+ +G+ P
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335
Query: 295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI 354
++++ L +++CS + G+ + ++G E + +D+ + D A +
Sbjct: 336 DRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIF 395
Query: 355 REMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH 395
M T W +++ + V+ AA FE P
Sbjct: 396 DRMS-NKTVVTWNSIVAGYVENGEVD----AAWETFETMPE 431
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/627 (37%), Positives = 363/627 (57%), Gaps = 71/627 (11%)
Query: 9 KEARIVHAHILGSAFKNDIAMQNTILNAYAKCGC----LDEARKLFDEMPVKDMVTWTAL 64
K+ HA L S ++ N +++ Y+KC L ARK+FDE+ KD +WT +
Sbjct: 166 KQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTM 225
Query: 65 ISGYSQN---DQPE---------------NAII--------------LFSQMLRLGLKPN 92
++GY +N D E NA+I + +M+ G++ +
Sbjct: 226 MTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELD 285
Query: 93 QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLF 152
+FT SV++A A A + G+QVHA+ L+ D++ + +SL+ +Y + + D+A +F
Sbjct: 286 EFTYPSVIRAC-ATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIF 343
Query: 153 TALESKNEVSWNALIAGH-------------------------------ARKSEGEKALR 181
+ +K+ VSWNAL++G+ A GE+ L+
Sbjct: 344 EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLK 403
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
FS M REGFEP +++S + A G+ G+ HA ++K G GN L+ MYA
Sbjct: 404 LFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYA 463
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K G +E+A +VF + D VSWN+++ QHG G V +E+ML+ GI P+++T L
Sbjct: 464 KCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLT 523
Query: 302 VLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
VLTACSHAGL+D+G+ YF M+ + + P HY +DLL R+G A I +P +
Sbjct: 524 VLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFK 583
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
PTA +W ALL CR+H N+ELG AA+++F L P G ++LL+N++A+ G+ + AR R
Sbjct: 584 PTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVR 643
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
K+M++ GVKKE ACSW+E + VH F+ +D +HP+ ++ +++ ++++++GYVPD+S
Sbjct: 644 KLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTS 703
Query: 481 HVLSYADQQ-EREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
VL + +E L HSEK+A+AF L+ PPG+TI I KN+R CGDCH+ F+F S V
Sbjct: 704 FVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWV 763
Query: 540 VEREIIVRDTNRFHHFRDGFCSCGDYW 566
V+R+II+RD RFHHFR+G CSCG++W
Sbjct: 764 VQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/477 (26%), Positives = 208/477 (43%), Gaps = 104/477 (21%)
Query: 2 CTHLKK--LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM------ 53
C L++ L+ AR VH +I+ F+ + N +++ Y K L+ AR+LFDE+
Sbjct: 22 CLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKI 81
Query: 54 -------------------------PV--KDMVTWTALISGYSQNDQPENAIILFSQMLR 86
PV +D V + A+I+G+S N+ +AI LF +M
Sbjct: 82 ARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKH 141
Query: 87 LGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR----- 141
G KP+ FT +SVL A D+K Q HA LK G + V ++L+ +Y++
Sbjct: 142 EGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSP 201
Query: 142 ---------FDQM----DDAWFLFTALESKNE------------------VSWNALIAGH 170
FD++ + +W KN V++NA+I+G+
Sbjct: 202 SLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGY 261
Query: 171 ARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA 230
+ ++AL M+ G E F+Y SV A A+ G L+ GK VHA+V++
Sbjct: 262 VNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFH 321
Query: 231 FVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNS------------------------ 266
F N+LV +Y K G ++A +F ++ +D+VSWN+
Sbjct: 322 F-DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEK 380
Query: 267 -------MLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319
M++G A++G G+ ++ F M R G P F + +C+ G GQ Y
Sbjct: 381 NILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYH 440
Query: 320 ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH 376
A + K G + + + + + G+++ A + R MP + + W AL+ A H
Sbjct: 441 AQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS-WNALIAALGQH 496
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/619 (37%), Positives = 350/619 (56%), Gaps = 54/619 (8%)
Query: 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGC----LDEARKLFDEMPVK 56
+ + + +++ +HA + S D IL A LD A K+F++MP +
Sbjct: 29 QINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 88
Query: 57 DMVTWTALISGYSQNDQPEN--AIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKFG 113
+ +W +I G+S++D+ + AI LF +M+ ++PN+FT SVLKA A + G
Sbjct: 89 NCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKAC-AKTGKIQEG 147
Query: 114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDA------------------------- 148
+Q+H LKYG+ + +V S+L+ MY M DA
Sbjct: 148 KQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207
Query: 149 ---W-----------------FLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLR 188
W LF + ++ VSWN +I+G++ + A+ F EM +
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 189 EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED 248
P + + SV A++ GSLE G+W+H + SG ++ +G+ L+DMY+K G IE
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 249 AEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308
A VF RL + +V++W++M+ G A HG + F KM + G+ P+ V ++ +LTACSH
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSH 387
Query: 309 AGLLDEGQGYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWG 367
GL++EG+ YF+ M G+EP HY VDLLGR+GLLD A +FI MPI+P +W
Sbjct: 388 GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWK 447
Query: 368 ALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427
ALLGACRM NVE+G A + ++ PHDSG ++ L+N+YAS G ++ + R MKE
Sbjct: 448 ALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKD 507
Query: 428 VKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYAD 487
++K+P CS ++ +H FV DD+HP+ I+ EIS+K++ GY P ++ VL +
Sbjct: 508 IRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLE 567
Query: 488 QQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVR 547
++++E L HSEK+A AF LIST PG I I KN+R+C DCHS+ K SKV +R+I VR
Sbjct: 568 EEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVR 627
Query: 548 DTNRFHHFRDGFCSCGDYW 566
D RFHHF+DG CSC DYW
Sbjct: 628 DRKRFHHFQDGSCSCMDYW 646
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/543 (40%), Positives = 329/543 (60%), Gaps = 5/543 (0%)
Query: 26 DIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQML 85
D A N++++ Y + G +D+A KLF +MP K++++WT +I G QN++ A+ LF ML
Sbjct: 158 DTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNML 217
Query: 86 RLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQM 145
R +K + V+ A A A G QVH +K G+ + YV +SL+ YA ++
Sbjct: 218 RCCIKSTSRPFTCVITAC-ANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRI 276
Query: 146 DDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205
D+ +F + W AL++G++ + E AL FS MLR P +++S +
Sbjct: 277 GDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSC 336
Query: 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWN 265
++ G+L+ GK +H +K G + AFVGN+LV MY+ SG++ DA VF ++ K+ +VSWN
Sbjct: 337 SALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWN 396
Query: 266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKK- 324
S++ GCAQHG GK F +M+R P+++TF +L+ACSH G L++G+ F M
Sbjct: 397 SIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSG 456
Query: 325 -HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGA 383
+ ++ + HY VD+LGR G L A + I M ++P VW ALL ACRMH +V+ G
Sbjct: 457 INHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGE 516
Query: 384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAV 443
AA IF LD S ++LL+NIYASAGR ++ ++ R MK++G+ K+P SWV +
Sbjct: 517 KAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKK 576
Query: 444 HMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLA 503
H F + D H R I++K + EK+K++GY PD L + +++E L HSE+LA
Sbjct: 577 HEFFSGDQPHCSR--IYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLA 634
Query: 504 LAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCG 563
+AF LI+T GS + + KN+RVC DCH+ K S VV REI++RD RFHHF++G CSCG
Sbjct: 635 IAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCG 694
Query: 564 DYW 566
DYW
Sbjct: 695 DYW 697
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 178/379 (46%), Gaps = 20/379 (5%)
Query: 2 CTHL--KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMV 59
C HL +++ EAR V + +++ ++ Y + L +A LFDEMPV+D+V
Sbjct: 43 CNHLLSRRIDEAREVFNQVPSP----HVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVV 98
Query: 60 TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA--GATDDKFGRQVH 117
+W ++ISG + A+ LF +M P + +S +G D+ R +
Sbjct: 99 SWNSMISGCVECGDMNTAVKLFDEM------PERSVVSWTAMVNGCFRSGKVDQAERLFY 152
Query: 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE 177
+K WN S++ Y +F ++DDA LF + KN +SW +I G +
Sbjct: 153 QMPVKDTAAWN-----SMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSG 207
Query: 178 KALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237
+AL F MLR + T ++ V TA A+ + G VH +IK G +V +L+
Sbjct: 208 EALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLI 267
Query: 238 DMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV 297
YA I D+ KVF+ + V W ++L+G + + + + F MLRN I PNQ
Sbjct: 268 TFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQS 327
Query: 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357
TF L +CS G LD G+ + K G+E + + V + +G ++ A+ ++
Sbjct: 328 TFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI 387
Query: 358 PIEPTAAVWGALLGACRMH 376
+ + W +++ C H
Sbjct: 388 -FKKSIVSWNSIIVGCAQH 405
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 152/264 (57%), Gaps = 4/264 (1%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
VH I+ F + + +++ YA C + ++RK+FDE + + WTAL+SGYS N +
Sbjct: 247 VHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKK 306
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
E+A+ +FS MLR + PNQ T +S L + A T D +G+++H +K G + + +VG+
Sbjct: 307 HEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLD-WGKEMHGVAVKLGLETDAFVGN 365
Query: 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193
SL+ MY+ ++DA +F + K+ VSWN++I G A+ G+ A F +M+R EP
Sbjct: 366 SLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEP 425
Query: 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGN--TLVDMYAKSGSIEDAEK 251
+++ + +A + G LE+G+ + ++ + + + +VD+ + G +++AE+
Sbjct: 426 DEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEE 485
Query: 252 VFNRL-LKRDVVSWNSMLTGCAQH 274
+ R+ +K + + W ++L+ C H
Sbjct: 486 LIERMVVKPNEMVWLALLSACRMH 509
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 96/185 (51%), Gaps = 9/185 (4%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C+ L L + +H + + D + N+++ Y+ G +++A +F ++ K +V+W
Sbjct: 336 CSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSW 395
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
++I G +Q+ + + A ++F QM+RL +P++ T + +L A +K GR++ + +
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEK-GRKLFYY-M 453
Query: 122 KYG---YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK-NEVSWNALIAG---HARKS 174
G D + + ++D+ R ++ +A L + K NE+ W AL++ H+
Sbjct: 454 SSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVD 513
Query: 175 EGEKA 179
GEKA
Sbjct: 514 RGEKA 518
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 40/174 (22%)
Query: 217 VHAHVIKSGGQLVAFVG-NTLVDMYAKSGSIEDAEKVF---------------------N 254
+H +S V F L+ + S I++A +VF N
Sbjct: 21 IHGKCYRSFSVTVEFQNREVLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSN 80
Query: 255 RLLK----------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304
RL+ RDVVSWNSM++GC + G V+ F++M + V++ ++
Sbjct: 81 RLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSV----VSWTAMVN 136
Query: 305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP 358
C +G +D+ + F M + A + + V + G +D ALK ++MP
Sbjct: 137 GCFRSGKVDQAERLFYQMPV----KDTAAWNSMVHGYLQFGKVDDALKLFKQMP 186
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/560 (38%), Positives = 334/560 (59%), Gaps = 5/560 (0%)
Query: 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQ 70
R++H ++ S + + ++ Y + G A KLFDEMP +D+V+W +LISGYS
Sbjct: 50 CRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSG 109
Query: 71 NDQPENAIILFSQML--RLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWN 128
+ S+M+ +G +PN+ T S++ A G + ++ GR +H +K+G
Sbjct: 110 RGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEE-GRCIHGLVMKFGVLEE 168
Query: 129 VYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLR 188
V V ++ ++ Y + + + LF L KN VSWN +I H + EK L F+ R
Sbjct: 169 VKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRR 228
Query: 189 EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED 248
G EP ++ +V + G + + +H ++ G + L+D+Y+K G +ED
Sbjct: 229 VGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLED 288
Query: 249 AEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308
+ VF+ + D ++W +ML A HG G+ ++ FE M+ GI+P+ VTF +L ACSH
Sbjct: 289 SSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSH 348
Query: 309 AGLLDEGQGYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWG 367
+GL++EG+ YF M K++ ++P HY VDLLGR+GLL A I+EMP+EP++ VWG
Sbjct: 349 SGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWG 408
Query: 368 ALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427
ALLGACR++K+ +LG AAER+FEL+P D +++L+NIY+++G DA+R R +MK+ G
Sbjct: 409 ALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKG 468
Query: 428 VKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIK-QIGYVPDSSHVLSYA 486
+ + CS++E N +H FV D +HP+ I KK +EI +K+K ++GY + VL
Sbjct: 469 LVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDV 528
Query: 487 DQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIV 546
+ +E + HSEK+A+AF L+ P I I+KN+R+CGDCH K S + +R II+
Sbjct: 529 GEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIII 588
Query: 547 RDTNRFHHFRDGFCSCGDYW 566
RD+ RFHHF DG CSC DYW
Sbjct: 589 RDSKRFHHFLDGSCSCSDYW 608
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 168/335 (50%), Gaps = 18/335 (5%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + +E R +H ++ ++ + N +N Y K G L + KLF+++ +K++V+W
Sbjct: 144 CVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSW 203
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGATDDKFGRQVHAFC 120
+I + QN E + F+ R+G +P+Q T +VL++ G + + +H
Sbjct: 204 NTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVV--RLAQGIHGLI 261
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
+ G+ N + ++LLD+Y++ +++D+ +F + S + ++W A++A +A G A+
Sbjct: 262 MFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAI 321
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS---GGQLVAFVGNTLV 237
+ F M+ G P H +++ + A + +G +E+GK + K +L + + +V
Sbjct: 322 KHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHY--SCMV 379
Query: 238 DMYAKSGSIEDAEKVFNRL-LKRDVVSWNSMLTGCAQHG---LG-KATVRWFEKMLRNGI 292
D+ +SG ++DA + + ++ W ++L C + LG KA R FE R+G
Sbjct: 380 DLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDG- 438
Query: 293 APNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV 327
N V + +A +GL + LMK+ G+
Sbjct: 439 -RNYVMLSNIYSA---SGLWKDASRIRNLMKQKGL 469
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 3/174 (1%)
Query: 199 SSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK 258
SS+ A+ S S+E + +H V+KS F+G+ LV Y + G AEK+F+ + +
Sbjct: 35 SSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPE 94
Query: 259 RDVVSWNSMLTGCAQHG-LGKATVRWFEKMLRN-GIAPNQVTFLCVLTACSHAGLLDEGQ 316
RD+VSWNS+++G + G LGK M+ G PN+VTFL +++AC + G +EG+
Sbjct: 95 RDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGR 154
Query: 317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALL 370
L+ K GV E F++ G+ G L + K ++ I+ + W ++
Sbjct: 155 CIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVS-WNTMI 207
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/563 (39%), Positives = 334/563 (59%), Gaps = 4/563 (0%)
Query: 7 KLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALIS 66
K K+ + +HA +L + F ++ +L G + AR++FDEM + W L
Sbjct: 23 KPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFK 82
Query: 67 GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYD 126
GY +N P +++L+ +M LG++P++FT V+KA + D G +HA +KYG+
Sbjct: 83 GYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAI-SQLGDFSCGFALHAHVVKYGFG 141
Query: 127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEM 186
V + L+ MY +F ++ A FLF +++ K+ V+WNA +A + AL F++M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201
Query: 187 LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSI 246
+ + F+ S+ +A GSLE G+ ++ K V N +DM+ K G+
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNT 261
Query: 247 EDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306
E A +F + +R+VVSW++M+ G A +G + + F M G+ PN VTFL VL+AC
Sbjct: 262 EAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSAC 321
Query: 307 SHAGLLDEGQGYFALMKK---HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTA 363
SHAGL++EG+ YF+LM + +EP + HY VDLLGR+GLL+ A +FI++MP+EP
Sbjct: 322 SHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDT 381
Query: 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423
+WGALLGAC +H+++ LG A+ + E P H+LL+NIYA+AG+ + + R M
Sbjct: 382 GIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKM 441
Query: 424 KESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVL 483
++ G KK A S VE + +H F D +HPQ I++K EI +KI+++GYVPD+ V
Sbjct: 442 RKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVF 501
Query: 484 SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVERE 543
+ +E+E L HSEKLA+AF LI PG I + KN+R C DCH+ KF S + E
Sbjct: 502 HDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTE 561
Query: 544 IIVRDTNRFHHFRDGFCSCGDYW 566
II+RD NRFHHFR+G CSC ++W
Sbjct: 562 IIMRDKNRFHHFRNGVCSCKEFW 584
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 3/233 (1%)
Query: 96 LSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL 155
LS +L+AS ++ K +++HA L+ G+ + + LL+ M A +F +
Sbjct: 13 LSELLRAS---SSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEM 69
Query: 156 ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGK 215
WN L G+ R ++L + +M G P F+Y V A++ G G
Sbjct: 70 HKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGF 129
Query: 216 WVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHG 275
+HAHV+K G + V LV MY K G + AE +F + +D+V+WN+ L C Q G
Sbjct: 130 ALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTG 189
Query: 276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE 328
+ +F KM + + + T + +L+AC G L+ G+ + +K ++
Sbjct: 190 NSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEID 242
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L L+ ++ +I ++N L+ + KCG + AR LF+EM +++V+W
Sbjct: 220 CGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSW 279
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGATDD 110
+ +I GY+ N A+ LF+ M GL+PN T VL A S AG ++
Sbjct: 280 STMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNE 329
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/551 (40%), Positives = 322/551 (58%), Gaps = 3/551 (0%)
Query: 18 ILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENA 77
+ G K + N ++N Y + G L ARK+FDEMP + + TW A+I+G Q + E
Sbjct: 101 VYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEG 160
Query: 78 IILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLD 137
+ LF +M LG P+++TL SV S AG G+Q+H + +KYG + ++ V SSL
Sbjct: 161 LSLFREMHGLGFSPDEYTLGSVFSGS-AGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAH 219
Query: 138 MYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS 197
MY R ++ D + ++ +N V+WN LI G+A+ E L + M G P +
Sbjct: 220 MYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKIT 279
Query: 198 YSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL 257
+ +V ++ + QG+ +HA IK G V V ++L+ MY+K G + DA K F+
Sbjct: 280 FVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSERE 339
Query: 258 KRDVVSWNSMLTGCAQHGLGKATVRWFEKML-RNGIAPNQVTFLCVLTACSHAGLLDEGQ 316
D V W+SM++ HG G + F M + + N+V FL +L ACSH+GL D+G
Sbjct: 340 DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGL 399
Query: 317 GYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRM 375
F +M +K+G +P HY VDLLGRAG LD+A IR MPI+ +W LL AC +
Sbjct: 400 ELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNI 459
Query: 376 HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACS 435
HKN E+ + I ++DP+DS ++LLAN++ASA R D + RK M++ VKKE S
Sbjct: 460 HKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 519
Query: 436 WVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKL 495
W E K VH F D + + I+ +E++ ++K GY PD++ VL D++E+E+ L
Sbjct: 520 WFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDL 579
Query: 496 QVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHF 555
HSEKLA+AFAL+ P G+ I I KN+RVC DCH AFK+ S + REI +RD +RFHHF
Sbjct: 580 VQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHF 639
Query: 556 RDGFCSCGDYW 566
+G CSCGDYW
Sbjct: 640 INGKCSCGDYW 650
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 32/295 (10%)
Query: 113 GRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHAR 172
G+Q+H + G+ + ++ + L+ MY++ A ++ + KN +S N LI G+ R
Sbjct: 63 GKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVR 122
Query: 173 KSE-------------------------------GEKALRTFSEMLREGFEPTHFSYSSV 201
+ E+ L F EM GF P ++ SV
Sbjct: 123 AGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSV 182
Query: 202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV 261
F+ A S+ G+ +H + IK G +L V ++L MY ++G ++D E V + R++
Sbjct: 183 FSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNL 242
Query: 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL 321
V+WN+++ G AQ+G + + ++ M +G PN++TF+ VL++CS + +GQ A
Sbjct: 243 VAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAE 302
Query: 322 MKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH 376
K G A + + + + G L A K E E +W +++ A H
Sbjct: 303 AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSSMISAYGFH 356
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 160/308 (51%), Gaps = 7/308 (2%)
Query: 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTAL 64
L+ + + +H + + + D+ + +++ + Y + G L + + MPV+++V W L
Sbjct: 189 LRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTL 248
Query: 65 ISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYG 124
I G +QN PE + L+ M G +PN+ T +VL + A + G+Q+HA +K G
Sbjct: 249 IMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQ-GQQIHAEAIKIG 307
Query: 125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFS 184
V V SSL+ MY++ + DA F+ E ++EV W+++I+ + +G++A+ F+
Sbjct: 308 ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFN 367
Query: 185 EMLRE-GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNT-LVDMYAK 242
M + E ++ ++ A + +G ++G + +++ G T +VD+ +
Sbjct: 368 TMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGR 427
Query: 243 SGSIEDAEKVFNRL-LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
+G ++ AE + + +K D+V W ++L+ C H + R F+++L+ I PN +
Sbjct: 428 AGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--IDPND-SACY 484
Query: 302 VLTACSHA 309
VL A HA
Sbjct: 485 VLLANVHA 492
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 2/189 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C+ L + + +HA + + +A+ +++++ Y+KCGCL +A K F E +D V W
Sbjct: 287 CSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMW 346
Query: 62 TALISGYSQNDQPENAIILFSQML-RLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
+++IS Y + Q + AI LF+ M + ++ N+ ++L A DK
Sbjct: 347 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMV 406
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE-VSWNALIAGHARKSEGEKA 179
KYG+ + + ++D+ R +D A + ++ K + V W L++ E A
Sbjct: 407 EKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMA 466
Query: 180 LRTFSEMLR 188
R F E+L+
Sbjct: 467 QRVFKEILQ 475
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 39/222 (17%)
Query: 187 LREGFEPTH---FSYSSVFT----ALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
LRE F+ F+ +S+FT + + SL GK +H ++ SG F+ N L+ M
Sbjct: 29 LREAFQRFRLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSM 88
Query: 240 YAK-------------------------------SGSIEDAEKVFNRLLKRDVVSWNSML 268
Y+K +G + +A KVF+ + R + +WN+M+
Sbjct: 89 YSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI 148
Query: 269 TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE 328
G Q + + F +M G +P++ T V + + + GQ K+G+E
Sbjct: 149 AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 208
Query: 329 PEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALL 370
+ + + R G L IR MP+ A W L+
Sbjct: 209 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVA-WNTLI 249
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/636 (35%), Positives = 347/636 (54%), Gaps = 72/636 (11%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT- 60
C L K + +H S D +Q ++ + Y +CG + +ARK+FD M KD+VT
Sbjct: 126 CAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTC 185
Query: 61 ----------------------------------WTALISGYSQNDQPENAIILFSQMLR 86
W ++SG++++ + A+++F ++
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245
Query: 87 LGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR----- 141
LG P+Q T+SSVL + G + GR +H + +K G + V S+++DMY +
Sbjct: 246 LGFCPDQVTVSSVLPSVGDSEMLN-MGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVY 304
Query: 142 -----FDQ---------------------MDDAWFLFTALESK----NEVSWNALIAGHA 171
F+Q +D A +F + + N VSW ++IAG A
Sbjct: 305 GIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCA 364
Query: 172 RKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAF 231
+ + +AL F EM G +P H + S+ A + +L G+ H ++
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVH 424
Query: 232 VGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG 291
VG+ L+DMYAK G I ++ VFN + +++V WNS++ G + HG K + FE ++R
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR 484
Query: 292 IAPNQVTFLCVLTACSHAGLLDEGQGYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRA 350
+ P+ ++F +L+AC GL DEG YF +M +++G++P HY V+LLGRAG L A
Sbjct: 485 LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544
Query: 351 LKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA 410
I+EMP EP + VWGALL +CR+ NV+L AAE++F L+P + G ++LL+NIYA+
Sbjct: 545 YDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAK 604
Query: 411 GRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKI 470
G + R M+ G+KK P CSW++ KN V+ +A D +HPQ I +K EIS+++
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEM 664
Query: 471 KQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCH 530
++ G+ P+ L ++QE+E L HSEKLA+ F L++TP G+ + + KN+R+CGDCH
Sbjct: 665 RKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCH 724
Query: 531 SAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
+ KF S REI +RDTNRFHHF+DG CSCGD+W
Sbjct: 725 AVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/432 (23%), Positives = 177/432 (40%), Gaps = 72/432 (16%)
Query: 15 HAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQP 74
HA IL S +ND + ++ +Y+ C ++A + +P + ++++LI ++
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 75 ENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSS 134
+I +FS+M GL P+ L ++ K A + K G+Q+H G D + +V S
Sbjct: 98 TQSIGVFSRMFSHGLIPDSHVLPNLFKVC-AELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156
Query: 135 LLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFE-- 192
+ MY R +M DA +F + K+ V+ +AL+ +ARK E+ +R SEM G E
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 193 ---------------------------------PTHFSYSSVFTALASTGSLEQGKWVHA 219
P + SSV ++ + L G+ +H
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 220 HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL----------------------- 256
+VIK G V + ++DMY KSG + +FN+
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 257 ------------LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304
++ +VVSW S++ GCAQ+G + F +M G+ PN VT +L
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396
Query: 305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAA 364
AC + L G+ + + +D+ + G ++ + MP +
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLV 455
Query: 365 VWGALLGACRMH 376
W +L+ MH
Sbjct: 456 CWNSLMNGFSMH 467
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 149/377 (39%), Gaps = 75/377 (19%)
Query: 115 QVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKS 174
Q HA LK G + Y+ + L+ Y+ ++ +DA + ++ S+++LI +
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGN 234
+++ FS M G P ++F A + + GK +H SG + AFV
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 235 TLVDMYAKSGSIEDAEKVFNRLLKRDV--------------------------------- 261
++ MY + G + DA KVF+R+ +DV
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215
Query: 262 --VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319
VSWN +L+G + G K V F+K+ G P+QVT VL + + +L+ G+
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 320 ALMKKHGVEPEEAHYVTFVDLLG-------------------------------RAGLLD 348
+ K G+ ++ +D+ G R GL+D
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 349 RAL---KFIREMPIEPTAAVWGALLGACRMH-KNVELGAYAAERIFELDPHDSGP-HILL 403
+AL + +E +E W +++ C + K++E A E E+ P H+ +
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE----ALELFREMQVAGVKPNHVTI 391
Query: 404 ANIYASAGRLNDAARAR 420
++ + G + R
Sbjct: 392 PSMLPACGNIAALGHGR 408
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/267 (18%), Positives = 93/267 (34%), Gaps = 47/267 (17%)
Query: 218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLG 277
HA ++KSG Q ++ L+ Y+ DA+ V + + S++S++ + L
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF 337
++ F +M +G+ P+ + C+ G+ + G++ + +
Sbjct: 98 TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157
Query: 338 VDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397
+ R G + A K M + ALL A
Sbjct: 158 FHMYMRCGRMGDARKVFDRMS-DKDVVTCSALLCA------------------------- 191
Query: 398 GPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRA 457
YA G L + R M+ SG++ SW + + R+
Sbjct: 192 ---------YARKGCLEEVVRILSEMESSGIEAN-IVSWNGILSGFN-----------RS 230
Query: 458 MIHKKWREISEKIKQIGYVPDSSHVLS 484
HK+ + +KI +G+ PD V S
Sbjct: 231 GYHKEAVVMFQKIHHLGFCPDQVTVSS 257
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/576 (40%), Positives = 352/576 (61%), Gaps = 16/576 (2%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C LK K + +H L ++++ N ++ YA+ G L+E RK+F MP D V+W
Sbjct: 425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSW 484
Query: 62 TALISGYSQNDQ--PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAF 119
++I +++++ PE A++ F R G K N+ T SSVL A + + + G+Q+H
Sbjct: 485 NSIIGALARSERSLPE-AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGE-LGKQIHGL 542
Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL-ESKNEVSWNALIAGHARKSEGEK 178
LK ++L+ Y + +MD +F+ + E ++ V+WN++I+G+ K
Sbjct: 543 ALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAK 602
Query: 179 ALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238
AL ML+ G F Y++V +A AS +LE+G VHA +++ + VG+ LVD
Sbjct: 603 ALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVD 662
Query: 239 MYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQV 297
MY+K G ++ A + FN + R+ SWNSM++G A+HG G+ ++ FE M +G P+ V
Sbjct: 663 MYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHV 722
Query: 298 TFLCVLTACSHAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356
TF+ VL+ACSHAGLL+EG +F M +G+ P H+ D+LGRAG LD+ FI +
Sbjct: 723 TFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEK 782
Query: 357 MPIEPTAAVWGALLGAC-RMH-KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLN 414
MP++P +W +LGAC R + + ELG AAE +F+L+P ++ ++LL N+YA+ GR
Sbjct: 783 MPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWE 842
Query: 415 DAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIG 474
D +ARK MK++ VKKE SWV K+ VHMFVA D +HP +I+KK +E++ K++ G
Sbjct: 843 DLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAG 902
Query: 475 YVPDSSHVLSYADQQEREAKLQVHSEKLALAFALI----STPPGSTIHIKKNIRVCGDCH 530
YVP + L +Q+ +E L HSEKLA+AF L ST P I I KN+RVCGDCH
Sbjct: 903 YVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLP---IRIMKNLRVCGDCH 959
Query: 531 SAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
SAFK+ SK+ R+II+RD+NRFHHF+DG CSC D+W
Sbjct: 960 SAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 153/284 (53%), Gaps = 10/284 (3%)
Query: 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQ 70
AR H+ + + D+ + N ++NAY + G ARK+FDEMP+++ V+W ++SGYS+
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 71 NDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGATDDKFGRQVHAFCLKYGYDWNV 129
N + + A++ M++ G+ NQ+ SVL+A G+ FGRQ+H K Y +
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
Query: 130 YVGSSLLDMYAR-FDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLR 188
V + L+ MY + + A F +E KN VSWN++I+ +++ + A R FS M
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199
Query: 189 EGFEPTHFSYSSVFTALASTGS-----LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS 243
+G PT +++ S+ T S LEQ + + KSG FVG+ LV +AKS
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQ---IMCTIQKSGLLTDLFVGSGLVSAFAKS 256
Query: 244 GSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKM 287
GS+ A KVFN++ R+ V+ N ++ G + G+ + F M
Sbjct: 257 GSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 173/363 (47%), Gaps = 7/363 (1%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+ I S D+ + + +++A+AK G L ARK+F++M ++ VT L+ G +
Sbjct: 230 IMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKW 289
Query: 74 PENAIILFSQM-LRLGLKPNQFT--LSSVLKASGAGATDDKFGRQVHAFCLKYGY-DWNV 129
E A LF M + + P + LSS + S A K GR+VH + G D+ V
Sbjct: 290 GEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMV 349
Query: 130 YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE 189
+G+ L++MYA+ + DA +F + K+ VSWN++I G + +A+ + M R
Sbjct: 350 GIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRH 409
Query: 190 GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDA 249
P F+ S ++ AS + G+ +H +K G L V N L+ +YA++G + +
Sbjct: 410 DILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNEC 469
Query: 250 EKVFNRLLKRDVVSWNSMLTGCA--QHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
K+F+ + + D VSWNS++ A + L +A V F R G N++TF VL+A S
Sbjct: 470 RKIFSSMPEHDQVSWNSIIGALARSERSLPEAVV-CFLNAQRAGQKLNRITFSSVLSAVS 528
Query: 308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWG 367
+ G+ L K+ + E + G+ G +D K M W
Sbjct: 529 SLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWN 588
Query: 368 ALL 370
+++
Sbjct: 589 SMI 591
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 11/269 (4%)
Query: 114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARK 173
R H+ K D +VY+ ++L++ Y A +F + +N VSW +++G++R
Sbjct: 21 RFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRN 80
Query: 174 SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ--GKWVHAHVIKSGGQLVAF 231
E ++AL +M++EG +++ SV A GS+ G+ +H + K + A
Sbjct: 81 GEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAV 140
Query: 232 VGNTLVDMYAKS-GSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN 290
V N L+ MY K GS+ A F + ++ VSWNS+++ +Q G ++ R F M +
Sbjct: 141 VSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYD 200
Query: 291 GIAPNQVTF-LCVLTACS----HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG 345
G P + TF V TACS LL++ ++K G+ + V ++G
Sbjct: 201 GSRPTEYTFGSLVTTACSLTEPDVRLLEQ---IMCTIQKSGLLTDLFVGSGLVSAFAKSG 257
Query: 346 LLDRALKFIREMPIEPTAAVWGALLGACR 374
L A K +M + G ++G R
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLMVGLVR 286
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/567 (38%), Positives = 335/567 (59%), Gaps = 3/567 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C H L + +H + L F + + N + +YAKCG L A+++F + K + +W
Sbjct: 405 CFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 464
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
ALI G++Q++ P ++ QM GL P+ FT+ S+L A + + G++VH F +
Sbjct: 465 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSAC-SKLKSLRLGKEVHGFII 523
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
+ + +++V S+L +Y ++ LF A+E K+ VSWN +I G+ + ++AL
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F +M+ G + S VF A + SL G+ HA+ +K + AF+ +L+DMYA
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 643
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K+GSI + KVFN L ++ SWN+M+ G HGL K ++ FE+M R G P+ +TFL
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703
Query: 302 VLTACSHAGLLDEGQGYFALMKKH-GVEPEEAHYVTFVDLLGRAGLLDRALKFI-REMPI 359
VLTAC+H+GL+ EG Y MK G++P HY +D+LGRAG LD+AL+ + EM
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763
Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
E +W +LL +CR+H+N+E+G A ++FEL+P ++LL+N+YA G+ D +
Sbjct: 764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823
Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
R+ M E ++K+ CSW+E V FV + I W + KI ++GY PD+
Sbjct: 824 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDT 883
Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
V ++E+ +L+ HSEKLAL + LI T G+TI + KN+R+C DCH+A K SKV
Sbjct: 884 MSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKV 943
Query: 540 VEREIIVRDTNRFHHFRDGFCSCGDYW 566
+EREI+VRD RFHHF++G CSCGDYW
Sbjct: 944 MEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 172/375 (45%), Gaps = 10/375 (2%)
Query: 6 KKLKEARIVHAHILGSA-FKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTAL 64
K ++ R +H + GS +ND + I+ YA CG D++R +FD + K++ W A+
Sbjct: 98 KDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAV 157
Query: 65 ISGYSQNDQPENAIILFSQMLRL-GLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKY 123
IS YS+N+ + + F +M+ L P+ FT V+KA AG +D G VH +K
Sbjct: 158 ISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC-AGMSDVGIGLAVHGLVVKT 216
Query: 124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTF 183
G +V+VG++L+ Y + DA LF + +N VSWN++I + E++
Sbjct: 217 GLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLL 276
Query: 184 SEMLRE----GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
EM+ E F P + +V A + GK VH +K + N L+DM
Sbjct: 277 GEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM 336
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG--IAPNQV 297
Y+K G I +A+ +F ++VVSWN+M+ G + G T +ML G + ++V
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 396
Query: 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357
T L + C H L + K E FV + G L A + +
Sbjct: 397 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI 456
Query: 358 PIEPTAAVWGALLGA 372
T W AL+G
Sbjct: 457 R-SKTVNSWNALIGG 470
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 182/377 (48%), Gaps = 4/377 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C +++ + VH + ++ + N +++ Y+KCGC+ A+ +F K++V+W
Sbjct: 302 CAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSW 361
Query: 62 TALISGYSQNDQPENAIILFSQMLRLG--LKPNQFTLSSVLKASGAGATDDKFGRQVHAF 119
++ G+S + QML G +K ++ T+ + + + +++H +
Sbjct: 362 NTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL-KELHCY 420
Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
LK + +N V ++ + YA+ + A +F + SK SWNALI GHA+ ++ +
Sbjct: 421 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 480
Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
L +M G P F+ S+ +A + SL GK VH +I++ + FV +++ +
Sbjct: 481 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 540
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
Y G + + +F+ + + +VSWN+++TG Q+G + F +M+ GI ++
Sbjct: 541 YIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 600
Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
+ V ACS L G+ A KH +E + + +D+ + G + ++ K +
Sbjct: 601 MPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK- 659
Query: 360 EPTAAVWGALLGACRMH 376
E + A W A++ +H
Sbjct: 660 EKSTASWNAMIMGYGIH 676
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/559 (22%), Positives = 232/559 (41%), Gaps = 70/559 (12%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + + VH ++ + D+ + N +++ Y G + +A +LFD MP +++V+W
Sbjct: 197 CAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSW 256
Query: 62 TALISGYSQNDQPENAIILFSQMLRL----GLKPNQFTLSSVLKASGAGATDDKFGRQVH 117
++I +S N E + +L +M+ P+ TL +VL A + G+ VH
Sbjct: 257 NSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC-AREREIGLGKGVH 315
Query: 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE 177
+ +K D + + ++L+DMY++ + +A +F +KN VSWN ++ G + + +
Sbjct: 316 GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 375
Query: 178 KALRTFSEMLREGFEPTHFSYSSVFTALAST---GSLEQGKWVHAHVIKSGGQLVAFVGN 234
+ML G E ++ A+ L K +H + +K V N
Sbjct: 376 GTFDVLRQMLAGG-EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVAN 434
Query: 235 TLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP 294
V YAK GS+ A++VF+ + + V SWN+++ G AQ + ++ +M +G+ P
Sbjct: 435 AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLP 494
Query: 295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL------- 347
+ T +L+ACS L G+ + ++ +E + Y++ + L G L
Sbjct: 495 DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 554
Query: 348 ------------------------DRALKFIREMP---IEPTAAVWGALLGACRMHKNVE 380
DRAL R+M I+ + GAC + ++
Sbjct: 555 DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR 614
Query: 381 LG----AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES---------- 426
LG AYA + + E D + L ++YA G + +++ +KE
Sbjct: 615 LGREAHAYALKHLLEDDAFIACS---LIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIM 671
Query: 427 -----GVKKEPACSWVETKNAVH-----MFVANDDAHPQRAMIHKKWREISEKIKQIGYV 476
G+ KE + E + H F+ A +IH+ R + + G
Sbjct: 672 GYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 731
Query: 477 PDSSHVLSYADQQEREAKL 495
P+ H D R +L
Sbjct: 732 PNLKHYACVIDMLGRAGQL 750
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 8/283 (2%)
Query: 96 LSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYV-GSSLLDMYARFDQMDDAWFLFTA 154
L +L+ASG D + GR++H N V + ++ MYA DD+ F+F A
Sbjct: 87 LGLLLQASGK-RKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 145
Query: 155 LESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE-GFEPTHFSYSSVFTALASTGSLEQ 213
L SKN WNA+I+ ++R ++ L TF EM+ P HF+Y V A A +
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205
Query: 214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQ 273
G VH V+K+G FVGN LV Y G + DA ++F+ + +R++VSWNSM+ +
Sbjct: 206 GLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSD 265
Query: 274 HGLGKATVRWFEKML-RNG---IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEP 329
+G + + +M+ NG P+ T + VL C+ + G+G K ++
Sbjct: 266 NGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK 325
Query: 330 EEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
E +D+ + G + A + I +M W ++G
Sbjct: 326 ELVLNNALMDMYSKCGCITNA-QMIFKMNNNKNVVSWNTMVGG 367
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/570 (37%), Positives = 330/570 (57%), Gaps = 8/570 (1%)
Query: 1 KCTHLKKLKE--ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDM 58
KC L++L + A + +HI +F +A + AR LF+ M D+
Sbjct: 38 KCNSLRELMQIQAYAIKSHIEDVSF---VAKLINFCTESPTESSMSYARHLFEAMSEPDI 94
Query: 59 VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHA 118
V + ++ GYS+ P LF ++L G+ P+ +T S+LKA ++ GRQ+H
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEE-GRQLHC 153
Query: 119 FCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEK 178
+K G D NVYV +L++MY + +D A +F + V +NA+I G+AR++ +
Sbjct: 154 LSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNE 213
Query: 179 ALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238
AL F EM + +P + SV ++ A GSL+ GKW+H + K V L+D
Sbjct: 214 ALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALID 273
Query: 239 MYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT 298
M+AK GS++DA +F ++ +D +W++M+ A HG + ++ FE+M + P+++T
Sbjct: 274 MFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEIT 333
Query: 299 FLCVLTACSHAGLLDEGQGYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357
FL +L ACSH G ++EG+ YF+ M K G+ P HY + VDLL RAG L+ A +FI ++
Sbjct: 334 FLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKL 393
Query: 358 PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAA 417
PI PT +W LL AC H N++L +ERIFELD G +++L+N+YA +
Sbjct: 394 PISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVD 453
Query: 418 RARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVP 477
RK+MK+ K P CS +E N VH F + D +H+ E+ +++K GYVP
Sbjct: 454 SLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVP 513
Query: 478 DSSHVL-SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFA 536
D+S V+ + + QE+E L+ HSEKLA+ F L++TPPG+TI + KN+RVC DCH+A K
Sbjct: 514 DTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLI 573
Query: 537 SKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
S + R++++RD RFHHF DG CSCGD+W
Sbjct: 574 SLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/565 (40%), Positives = 344/565 (60%), Gaps = 15/565 (2%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM-PVKDMVTWTALISGYSQND 72
+H + F + ++ N + Y+K G L EA +F M ++D V+W ++I Y Q+
Sbjct: 160 LHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHK 219
Query: 73 QPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFG-RQVHAFCLKYGYDWNVYV 131
+ A+ L+ +M+ G K + FTL+SVL A + D G RQ H +K G+ N +V
Sbjct: 220 EGAKALALYKEMIFKGFKIDMFTLASVLNA--LTSLDHLIGGRQFHGKLIKAGFHQNSHV 277
Query: 132 GSSLLDMYARF---DQMDDAWFLFTALESKNEVSWNALIAGHARKSE-GEKALRTFSEML 187
GS L+D Y++ D M D+ +F + S + V WN +I+G++ E E+A+++F +M
Sbjct: 278 GSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQ 337
Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS--GGQLVAFVGNTLVDMYAKSGS 245
R G P S+ V +A ++ S Q K +H IKS ++ V N L+ +Y KSG+
Sbjct: 338 RIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRIS-VNNALISLYYKSGN 396
Query: 246 IEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305
++DA VF+R+ + + VS+N M+ G AQHG G + +++ML +GIAPN++TF+ VL+A
Sbjct: 397 LQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSA 456
Query: 306 CSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAA 364
C+H G +DEGQ YF MK+ +EPE HY +DLLGRAG L+ A +FI MP +P +
Sbjct: 457 CAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSV 516
Query: 365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK 424
W ALLGACR HKN+ L AA + + P + P+++LAN+YA A + + A RK M+
Sbjct: 517 AWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMR 576
Query: 425 ESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVL- 483
++K+P CSW+E K H+FVA D +HP +++ E+ +K+K++GYV D +
Sbjct: 577 GKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMV 636
Query: 484 --SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVE 541
A + + E +L HSEKLA+AF L+ST G + + KN+R+CGDCH+A KF S V
Sbjct: 637 KEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAG 696
Query: 542 REIIVRDTNRFHHFRDGFCSCGDYW 566
REIIVRD RFH F+DG CSCGDYW
Sbjct: 697 REIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 165/283 (58%), Gaps = 8/283 (2%)
Query: 31 NTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLK 90
N I+ AYAK + AR+LFDE+P D V++ LISGY+ + A++LF +M +LG +
Sbjct: 78 NVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFE 137
Query: 91 PNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWF 150
+ FTLS ++ A +Q+H F + G+D V ++ + Y++ + +A
Sbjct: 138 VDGFTLSGLIAAC---CDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVS 194
Query: 151 LFTAL-ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG 209
+F + E ++EVSWN++I + + EG KAL + EM+ +GF+ F+ +SV AL S
Sbjct: 195 VFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLD 254
Query: 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE---DAEKVFNRLLKRDVVSWNS 266
L G+ H +IK+G + VG+ L+D Y+K G + D+EKVF +L D+V WN+
Sbjct: 255 HLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNT 314
Query: 267 MLTGCAQH-GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308
M++G + + L + V+ F +M R G P+ +F+CV +ACS+
Sbjct: 315 MISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 7/256 (2%)
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
NV+ + ++ YA+ ++ A LF + + VS+N LI+G+A E A+ F M
Sbjct: 73 NVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMR 132
Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
+ GFE F+ S + A L K +H + G + V N V Y+K G +
Sbjct: 133 KLGFEVDGFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLR 190
Query: 248 DAEKVFNRLLK-RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306
+A VF + + RD VSWNSM+ QH G + +++M+ G + T VL A
Sbjct: 191 EAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250
Query: 307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLD---RALKFIREMPIEPTA 363
+ L G+ + + K G +D + G D + K +E+ + P
Sbjct: 251 TSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEI-LSPDL 309
Query: 364 AVWGALLGACRMHKNV 379
VW ++ M++ +
Sbjct: 310 VVWNTMISGYSMNEEL 325
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/559 (41%), Positives = 337/559 (60%), Gaps = 12/559 (2%)
Query: 11 ARIVHAHILGSAF-KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYS 69
+R++ AH L + D N +L+ Y + ++A+ FD MP KD +W +I+GY+
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYA 166
Query: 70 QNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNV 129
+ + E A LF M+ + N+ + ++++ SG D + H F K V
Sbjct: 167 RRGEMEKARELFYSMM----EKNEVSWNAMI--SGYIECGD-LEKASHFF--KVAPVRGV 217
Query: 130 YVGSSLLDMYARFDQMDDAWFLFTALE-SKNEVSWNALIAGHARKSEGEKALRTFSEMLR 188
++++ Y + +++ A +F + +KN V+WNA+I+G+ S E L+ F ML
Sbjct: 218 VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE 277
Query: 189 EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED 248
EG P SS + +L+ G+ +H V KS +L+ MY K G + D
Sbjct: 278 EGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGD 337
Query: 249 AEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308
A K+F + K+DVV+WN+M++G AQHG + F +M+ N I P+ +TF+ VL AC+H
Sbjct: 338 AWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNH 397
Query: 309 AGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWG 367
AGL++ G YF ++++ + VEP+ HY VDLLGRAG L+ ALK IR MP P AAV+G
Sbjct: 398 AGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFG 457
Query: 368 ALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427
LLGACR+HKNVEL +AAE++ +L+ ++ ++ LANIYAS R D AR RK MKES
Sbjct: 458 TLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESN 517
Query: 428 VKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYAD 487
V K P SW+E +N VH F ++D HP+ IHKK +E+ +K+K GY P+ L +
Sbjct: 518 VVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVE 577
Query: 488 QQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVR 547
++++E L HSEKLA+AF I P GS I + KN+R+CGDCH A KF S++ +REIIVR
Sbjct: 578 EEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVR 637
Query: 548 DTNRFHHFRDGFCSCGDYW 566
DT RFHHF+DG CSCGDYW
Sbjct: 638 DTTRFHHFKDGSCSCGDYW 656
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 60/101 (59%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C+ L L+ R +H + S ND+ ++++ Y KCG L +A KLF+ M KD+V W
Sbjct: 294 CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 353
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA 102
A+ISGY+Q+ + A+ LF +M+ ++P+ T +VL A
Sbjct: 354 NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA 394
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 128/295 (43%), Gaps = 22/295 (7%)
Query: 140 ARFDQMDDAWFLFTALESKNEVSWNALIAGHAR-KSEGEKALRTFSEMLREGFEPTHFSY 198
R +D A +F + +KN ++WN+L+ G ++ S +A + F E+ EP FSY
Sbjct: 72 VRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP----EPDTFSY 127
Query: 199 SSVFTALASTGSLEQGK-WVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL 257
+ + + + E+ + + K NT++ YA+ G +E A ++F ++
Sbjct: 128 NIMLSCYVRNVNFEKAQSFFDRMPFKDAASW-----NTMITGYARRGEMEKARELFYSMM 182
Query: 258 KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQG 317
+++ VSWN+M++G + G + +F+ G+ V + ++T A ++ +
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV----VAWTAMITGYMKAKKVELAE- 237
Query: 318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACR 374
A+ K V + + + LK R M I P ++ + L C
Sbjct: 238 --AMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCS 295
Query: 375 MHKNVELGAYAAERIFELD-PHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428
++LG + + + +D L ++Y G L DA + ++MK+ V
Sbjct: 296 ELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 220 HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKA 279
++ K Q F N ++ +SG I+ A +VF+ + ++ ++WNS+L G+ K
Sbjct: 51 YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLI-----GISKD 105
Query: 280 TVRWFE--KMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF 337
R E ++ P+ ++ +L+ ++ Q +F M + A + T
Sbjct: 106 PSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTM 161
Query: 338 VDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
+ R G +++A + M +E W A++
Sbjct: 162 ITGYARRGEMEKARELFYSM-MEKNEVSWNAMISG 195
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/565 (39%), Positives = 333/565 (58%), Gaps = 7/565 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L + R +HA+++ + F DI++ N++ Y G EA KLF M KD+V+W
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSW 366
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
T +ISGY N P+ AI + M + +KP++ T+++VL A A D G ++H +
Sbjct: 367 TTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSAC-ATLGDLDTGVELHKLAI 425
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K V V ++L++MY++ +D A +F + KN +SW ++IAG + +AL
Sbjct: 426 KARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL- 484
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F ++ +P + ++ A A G+L GK +HAHV+++G L F+ N L+DMY
Sbjct: 485 IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYV 544
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
+ G + A FN K+DV SWN +LTG ++ G G V F++M+++ + P+++TF+
Sbjct: 545 RCGRMNTAWSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFIS 603
Query: 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361
+L CS + ++ +G YF+ M+ +GV P HY VDLLGRAG L A KFI++MP+ P
Sbjct: 604 LLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTP 663
Query: 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK 421
AVWGALL ACR+H ++LG +A+ IFELD G +ILL N+YA G+ + A+ R+
Sbjct: 664 DPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRR 723
Query: 422 MMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSH 481
MMKE+G+ + CSWVE K VH F+++D HPQ I+ EK+ ++G S
Sbjct: 724 MMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISES 783
Query: 482 VLSYADQQE--REAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
S D+ E R+ HSE+ A+AF LI+T PG I + KN+ +C +CH KF SK
Sbjct: 784 --SSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKT 841
Query: 540 VEREIIVRDTNRFHHFRDGFCSCGD 564
V REI VRD FHHF+DG CSCGD
Sbjct: 842 VRREISVRDAEHFHHFKDGECSCGD 866
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 195/380 (51%), Gaps = 11/380 (2%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + +E V++ L S + + N L + + G L +A +F +M +++ +W
Sbjct: 104 CEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSW 163
Query: 62 TALISGYSQNDQPENAIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
L+ GY++ + A+ L+ +ML +G +KP+ +T VL+ G G D G++VH
Sbjct: 164 NVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCG-GIPDLARGKEVHVHV 222
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
++YGY+ ++ V ++L+ MY + + A LF + ++ +SWNA+I+G+ + L
Sbjct: 223 VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGL 282
Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
F M +P + +SV +A G G+ +HA+VI +G + V N+L MY
Sbjct: 283 ELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342
Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
+GS +AEK+F+R+ ++D+VSW +M++G + L + + M ++ + P+++T
Sbjct: 343 LNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVA 402
Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV----TFVDLLGRAGLLDRALKFIRE 356
VL+AC+ G LD G + K ++ YV +++ + +D+AL
Sbjct: 403 AVLSACATLGDLDTG----VELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHN 458
Query: 357 MPIEPTAAVWGALLGACRMH 376
+P W +++ R++
Sbjct: 459 IP-RKNVISWTSIIAGLRLN 477
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/566 (36%), Positives = 331/566 (58%), Gaps = 2/566 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C++ +++E + H L + ++NT++ Y+ C EA ++ D++P D+ +
Sbjct: 146 CSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVF 205
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
++ +SGY + + + + + N T S L+ + D QVH+ +
Sbjct: 206 SSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLF-SNLRDLNLALQVHSRMV 264
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
++G++ V +L++MY + ++ A +F ++N ++ + + E+AL
Sbjct: 265 RFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALN 324
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
FS+M + P ++++ + ++A L+QG +H V+KSG + VGN LV+MYA
Sbjct: 325 LFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYA 384
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
KSGSIEDA K F+ + RD+V+WN+M++GC+ HGLG+ + F++M+ G PN++TF+
Sbjct: 385 KSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIG 444
Query: 302 VLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
VL ACSH G +++G YF LMKK V+P+ HY V LL +AG+ A F+R PIE
Sbjct: 445 VLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIE 504
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
W LL AC + +N LG AE E P+DSG ++LL+NI+A + A+ R
Sbjct: 505 WDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVR 564
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
+M GVKKEP SW+ +N H+F+A D+ HP+ +I+ K +E+ KIK +GY PD +
Sbjct: 565 SLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVA 624
Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
D+++RE L HSEKLA+A+ LI TP S +++ KN+R+C DCHSA K SK+
Sbjct: 625 GAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKIS 684
Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
+R I++RD+NRFHHF DG CSC DYW
Sbjct: 685 KRYIVIRDSNRFHHFLDGQCSCCDYW 710
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 8/380 (2%)
Query: 2 CTHLKKLKEARIVHAHIL---GSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDM 58
C + L+ +HAH++ S+ D N+++N Y KC ARKLFD MP +++
Sbjct: 41 CANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNV 100
Query: 59 VTWTALISGYSQNDQPENAIILFSQMLRLG-LKPNQFTLSSVLKA-SGAGATDDKFGRQV 116
V+W A++ GY + + LF M G +PN+F + V K+ S +G ++ G+Q
Sbjct: 101 VSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEE--GKQF 158
Query: 117 HAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEG 176
H LKYG + +V ++L+ MY+ +A + L + +++ ++G+
Sbjct: 159 HGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAF 218
Query: 177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
++ L + E F + +Y S ++ L VH+ +++ G L
Sbjct: 219 KEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGAL 278
Query: 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
++MY K G + A++VF+ +++ +++ Q + + F KM + PN+
Sbjct: 279 INMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNE 338
Query: 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356
TF +L + + LL +G L+ K G V++ ++G ++ A K
Sbjct: 339 YTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSG 398
Query: 357 MPIEPTAAVWGALLGACRMH 376
M W ++ C H
Sbjct: 399 MTFRDIVT-WNTMISGCSHH 417
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/555 (36%), Positives = 336/555 (60%), Gaps = 4/555 (0%)
Query: 14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
+HA+++ + +++ + NT+++ Y+KC + F M KD+++WT +I+GY+QND
Sbjct: 408 LHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDC 467
Query: 74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
A+ LF + + ++ ++ L S+L+AS +++H L+ G + + +
Sbjct: 468 HVEALELFRDVAKKRMEIDEMILGSILRASSV-LKSMLIVKEIHCHILRKGL-LDTVIQN 525
Query: 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193
L+D+Y + M A +F +++ K+ VSW ++I+ A +A+ F M+ G
Sbjct: 526 ELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSA 585
Query: 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF 253
+ + +A AS +L +G+ +H ++++ G L + +VDMYA G ++ A+ VF
Sbjct: 586 DSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVF 645
Query: 254 NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313
+R+ ++ ++ + SM+ HG GKA V F+KM ++P+ ++FL +L ACSHAGLLD
Sbjct: 646 DRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLD 705
Query: 314 EGQGYFALMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372
EG+G+ +M+ ++ +EP HYV VD+LGRA + A +F++ M EPTA VW ALL A
Sbjct: 706 EGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAA 765
Query: 373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEP 432
CR H E+G AA+R+ EL+P + G +L++N++A GR ND + R MK SG++K P
Sbjct: 766 CRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHP 825
Query: 433 ACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKI-KQIGYVPDSSHVLSYADQQER 491
CSW+E VH F A D +HP+ I++K E++ K+ +++GYV D+ VL D+ E+
Sbjct: 826 GCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEK 885
Query: 492 EAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNR 551
L HSE++A+A+ L+ TP + + I KN+RVC DCH+ K SK+ R+I++RD NR
Sbjct: 886 VQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANR 945
Query: 552 FHHFRDGFCSCGDYW 566
FHHF G CSCGD W
Sbjct: 946 FHHFESGLCSCGDSW 960
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 173/349 (49%), Gaps = 6/349 (1%)
Query: 2 CTHLKKLKEARIVHAHILGS--AFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMV 59
C + + + R +H+ I + +F+ D + ++ Y KCG LD+A K+FDEMP +
Sbjct: 90 CGKRRAVSQGRQLHSRIFKTFPSFELDF-LAGKLVFMYGKCGSLDDAEKVFDEMPDRTAF 148
Query: 60 TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAF 119
W +I Y N +P +A+ L+ M G+ + ++LKA A D + G ++H+
Sbjct: 149 AWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKAC-AKLRDIRSGSELHSL 207
Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE-VSWNALIAGHARKSEGEK 178
+K GY ++ ++L+ MYA+ D + A LF + K + V WN++++ ++ + +
Sbjct: 208 LVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLE 267
Query: 179 ALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA-FVGNTLV 237
L F EM G P ++ S TA + GK +HA V+KS +V N L+
Sbjct: 268 TLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALI 327
Query: 238 DMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV 297
MY + G + AE++ ++ DVV+WNS++ G Q+ + K + +F M+ G ++V
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387
Query: 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL 346
+ ++ A L G A + KHG + T +D+ + L
Sbjct: 388 SMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNL 436
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 159/308 (51%), Gaps = 3/308 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK-DMVT 60
C L+ ++ +H+ ++ + + + N +++ YAK L AR+LFD K D V
Sbjct: 192 CAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL 251
Query: 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
W +++S YS + + + LF +M G PN +T+ S L A G + K G+++HA
Sbjct: 252 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD-GFSYAKLGKEIHASV 310
Query: 121 LKYG-YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
LK + +YV ++L+ MY R +M A + + + + V+WN+LI G+ + ++A
Sbjct: 311 LKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEA 370
Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
L FS+M+ G + S +S+ A +L G +HA+VIK G VGNTL+DM
Sbjct: 371 LEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDM 430
Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
Y+K + F R+ +D++SW +++ G AQ+ + F + + + +++
Sbjct: 431 YSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMIL 490
Query: 300 LCVLTACS 307
+L A S
Sbjct: 491 GSILRASS 498
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 4/261 (1%)
Query: 113 GRQVHAFCLKYGYDWNV-YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHA 171
GRQ+H+ K + + ++ L+ MY + +DDA +F + + +WN +I +
Sbjct: 99 GRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV 158
Query: 172 RKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAF 231
E AL + M EG S+ ++ A A + G +H+ ++K G F
Sbjct: 159 SNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGF 218
Query: 232 VGNTLVDMYAKSGSIEDAEKVFNRLLKR-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN 290
+ N LV MYAK+ + A ++F+ ++ D V WNS+L+ + G T+ F +M
Sbjct: 219 IVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMT 278
Query: 291 GIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVT-FVDLLGRAGLLDR 349
G APN T + LTAC G+ A + K E + + + R G + +
Sbjct: 279 GPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQ 338
Query: 350 ALKFIREMPIEPTAAVWGALL 370
A + +R+M W +L+
Sbjct: 339 AERILRQMN-NADVVTWNSLI 358
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/562 (38%), Positives = 321/562 (57%), Gaps = 40/562 (7%)
Query: 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQ 70
R +H + + + N +++ Y KCG L EAR + DEM +D+V+W +L+ GY+Q
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218
Query: 71 NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVY 130
N + ++A+ + +M + + + T++S+L A T+ NV
Sbjct: 219 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE------------------NV- 259
Query: 131 VGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREG 190
MY + +F + K+ VSWN +I + + + +A+ +S M +G
Sbjct: 260 -------MYVKD--------MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADG 304
Query: 191 FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE 250
FEP S +SV A T +L GK +H ++ + + N L+DMYAK G +E A
Sbjct: 305 FEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKAR 364
Query: 251 KVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310
VF + RDVVSW +M++ G G V F K+ +G+ P+ + F+ L ACSHAG
Sbjct: 365 DVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAG 424
Query: 311 LLDEGQGYFALMKKH-GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGAL 369
LL+EG+ F LM H + P H VDLLGRAG + A +FI++M +EP VWGAL
Sbjct: 425 LLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGAL 484
Query: 370 LGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK 429
LGACR+H + ++G AA+++F+L P SG ++LL+NIYA AGR + R +MK G+K
Sbjct: 485 LGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLK 544
Query: 430 KEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQ 489
K P S VE +H F+ D +HPQ I+++ + +K+K++GYVPDS L +++
Sbjct: 545 KNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEE 604
Query: 490 EREAKLQVHSEKLALAFALISTP-----PGSTIHIKKNIRVCGDCHSAFKFASKVVEREI 544
++E L VHSEKLA+ FAL++T +TI I KN+R+CGDCH A K S++ REI
Sbjct: 605 DKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREI 664
Query: 545 IVRDTNRFHHFRDGFCSCGDYW 566
I+RDTNRFH FR G CSCGDYW
Sbjct: 665 IIRDTNRFHVFRFGVCSCGDYW 686
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 39/367 (10%)
Query: 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISG 67
++ R VH+ I+ + + ++ ++ AYA + ARK+FDE+P ++++ +I
Sbjct: 55 IRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRS 114
Query: 68 YSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDW 127
Y N + +F M ++P+ +T VLKA T GR++H K G
Sbjct: 115 YVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGT-IVIGRKIHGSATKVGLSS 173
Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
++VG+ L+ MY + + +A + + ++ VSWN+L+ G+A+ + AL EM
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM- 232
Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD--MYAKSGS 245
E + +H G++ L+ V NT + MY K
Sbjct: 233 -ESVKISH-----------DAGTM--------------ASLLPAVSNTTTENVMYVKD-- 264
Query: 246 IEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305
+F ++ K+ +VSWN M+ ++ + V + +M +G P+ V+ VL A
Sbjct: 265 ------MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA 318
Query: 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAV 365
C L G+ +++ + P +D+ + G L++A M +
Sbjct: 319 CGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS- 377
Query: 366 WGALLGA 372
W A++ A
Sbjct: 378 WTAMISA 384
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 28/335 (8%)
Query: 109 DDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIA 168
D + R VH+ + N +G L+ YA + A +F + +N + N +I
Sbjct: 54 DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113
Query: 169 GHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQL 228
+ + ++ F M P H+++ V A + +G++ G+ +H K G
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173
Query: 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKML 288
FVGN LV MY K G + +A V + + +RDVVSWNS++ G AQ+ + +M
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233
Query: 289 RNGIAPNQVTFLCVLTACSHA---GLLDEGQGYFALMKKH--------GVEPEEAHYVTF 337
I+ + T +L A S+ ++ +F + KK GV + A V
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293
Query: 338 VDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397
V+L R + EP A ++L AC + LG I +
Sbjct: 294 VELYSR----------MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYI---ERKKL 340
Query: 398 GPHILLAN----IYASAGRLNDAARARKMMKESGV 428
P++LL N +YA G L A + MK V
Sbjct: 341 IPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 15/232 (6%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C L + +H +I ++ ++N +++ YAKCGCL++AR +F+ M +D+V+W
Sbjct: 319 CGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSW 378
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGATDDKFGRQVHAFC 120
TA+IS Y + + +A+ LFS++ GL P+ + L A S AG ++ GR C
Sbjct: 379 TAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEE--GRS----C 432
Query: 121 LK-----YGYDWNVYVGSSLLDMYARFDQMDDAW-FLFTALESKNEVSWNALIAGHARKS 174
K Y + + ++D+ R ++ +A+ F+ NE W AL+ S
Sbjct: 433 FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHS 492
Query: 175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGG 226
+ + L ++ + E + + Y + A G E+ + +++KS G
Sbjct: 493 DTDIGLLAADKLFQLAPEQSGY-YVLLSNIYAKAGRWEEVTNIR-NIMKSKG 542
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/566 (36%), Positives = 339/566 (59%), Gaps = 2/566 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
CT K +H+ ++ F +D+A ++L+ Y+ G L++A KLFDE+P + +VTW
Sbjct: 121 CTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTW 180
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
TAL SGY+ + + AI LF +M+ +G+KP+ + + VL A D G + +
Sbjct: 181 TALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSAC-VHVGDLDSGEWIVKYME 239
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
+ N +V ++L+++YA+ +M+ A +F ++ K+ V+W+ +I G+A S ++ +
Sbjct: 240 EMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIE 299
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
F +ML+E +P FS ++ AS G+L+ G+W + + + F+ N L+DMYA
Sbjct: 300 LFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYA 359
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K G++ +VF + ++D+V N+ ++G A++G K + F + + GI+P+ TFL
Sbjct: 360 KCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLG 419
Query: 302 VLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
+L C HAGL+ +G +F A+ + ++ HY VDL GRAG+LD A + I +MP+
Sbjct: 420 LLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMR 479
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
P A VWGALL CR+ K+ +L + + L+P ++G ++ L+NIY+ GR ++AA R
Sbjct: 480 PNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVR 539
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
MM + G+KK P SW+E + VH F+A+D +HP I+ K ++ +++ +G+VP +
Sbjct: 540 DMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTE 599
Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
V +++E+E L HSEKLA+A LIST G I + KN+RVCGDCH K SK+
Sbjct: 600 FVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKIT 659
Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
REI+VRD NRFH F +G CSC DYW
Sbjct: 660 RREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 1/257 (0%)
Query: 114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARK 173
+Q+H + + + ++ + LL F Q ++ LF+ + N +N+LI G
Sbjct: 30 KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNN 89
Query: 174 SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG 233
+ L F + + G F++ V A S + G +H+ V+K G
Sbjct: 90 HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAM 149
Query: 234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA 293
+L+ +Y+ SG + DA K+F+ + R VV+W ++ +G G + + F+KM+ G+
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVK 209
Query: 294 PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF 353
P+ + VL+AC H G LD G+ M++ ++ T V+L + G +++A
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSV 269
Query: 354 IREMPIEPTAAVWGALL 370
M +E W ++
Sbjct: 270 FDSM-VEKDIVTWSTMI 285
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/565 (39%), Positives = 332/565 (58%), Gaps = 39/565 (6%)
Query: 36 AYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFT 95
AYA G + + LF + D+ +TA I+ S N + A +L+ Q+L + PN+FT
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 96 LSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR----------FDQM 145
SS+LK+ K G+ +H LK+G + YV + L+D+YA+ FD+M
Sbjct: 133 FSSLLKSCST-----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRM 187
Query: 146 DD---------------------AWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFS 184
+ A LF ++ ++ VSWN +I G+A+ AL F
Sbjct: 188 PERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQ 247
Query: 185 EMLREG-FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS 243
++L EG +P + + +A + G+LE G+W+H V S +L V L+DMY+K
Sbjct: 248 KLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKC 307
Query: 244 GSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR-NGIAPNQVTFLCV 302
GS+E+A VFN ++D+V+WN+M+ G A HG + +R F +M G+ P +TF+
Sbjct: 308 GSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367
Query: 303 LTACSHAGLLDEGQGYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361
L AC+HAGL++EG F M +++G++P+ HY V LLGRAG L RA + I+ M ++
Sbjct: 368 LQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDA 427
Query: 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK 421
+ +W ++LG+C++H + LG AE + L+ +SG ++LL+NIYAS G A+ R
Sbjct: 428 DSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRN 487
Query: 422 MMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSH 481
+MKE G+ KEP S +E +N VH F A D H + I+ R+ISE+IK GYVP+++
Sbjct: 488 LMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNT 547
Query: 482 VLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVE 541
VL ++ E+E LQVHSE+LA+A+ LIST PGS + I KN+RVC DCH+ K SK+
Sbjct: 548 VLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITG 607
Query: 542 REIIVRDTNRFHHFRDGFCSCGDYW 566
R+I++RD NRFHHF DG CSCGD+W
Sbjct: 608 RKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 18/264 (6%)
Query: 33 ILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLG-LKP 91
++ YAK G ++ AR LFD M +D+V+W +I GY+Q+ P +A++LF ++L G KP
Sbjct: 198 MITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKP 257
Query: 92 NQFTLSSVLKA-SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWF 150
++ T+ + L A S GA + GR +H F NV V + L+DMY++ +++A
Sbjct: 258 DEITVVAALSACSQIGALET--GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVL 315
Query: 151 LFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLR-EGFEPTHFSYSSVFTALASTG 209
+F K+ V+WNA+IAG+A + ALR F+EM G +PT ++ A A G
Sbjct: 316 VFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAG 375
Query: 210 SLEQGKWVHAHVIKSGGQLVAFVGNT-----LVDMYAKSGSIEDA-EKVFNRLLKRDVVS 263
+ +G + +S GQ LV + ++G ++ A E + N + D V
Sbjct: 376 LVNEG----IRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVL 431
Query: 264 WNSMLTGCAQHG---LGKATVRWF 284
W+S+L C HG LGK +
Sbjct: 432 WSSVLGSCKLHGDFVLGKEIAEYL 455
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C+ + L+ R +H + S + ++ + +++ Y+KCG L+EA +F++ P KD+V W
Sbjct: 269 CSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAW 328
Query: 62 TALISGYSQNDQPENAIILFSQMLRL-GLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
A+I+GY+ + ++A+ LF++M + GL+P T L+A ++ R +
Sbjct: 329 NAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMG 388
Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAW 149
+YG + L+ + R Q+ A+
Sbjct: 389 QEYGIKPKIEHYGCLVSLLGRAGQLKRAY 417
>sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2
SV=1
Length = 701
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/570 (36%), Positives = 334/570 (58%), Gaps = 6/570 (1%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C LK ++ + V+ ++ + F+ + M N IL + KCG + +AR+LFDE+P +++ ++
Sbjct: 133 CIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSY 192
Query: 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
++ISG+ A LF M T + +L+AS AG G+Q+H L
Sbjct: 193 YSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRAS-AGLGSIYVGKQLHVCAL 251
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K G N +V L+DMY++ ++DA F + K V+WN +IAG+A E+AL
Sbjct: 252 KLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALC 311
Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
+M G F+ S + LE K HA +I++G + LVD Y+
Sbjct: 312 LLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYS 371
Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
K G ++ A VF++L +++++SWN+++ G A HG G V+ FEKM+ +APN VTFL
Sbjct: 372 KWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLA 431
Query: 302 VLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
VL+AC+++GL ++G F M + HG++P HY ++LLGR GLLD A+ FIR P++
Sbjct: 432 VLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLK 491
Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
T +W ALL ACRM +N+ELG AE+++ + P G ++++ N+Y S G+ +AA
Sbjct: 492 TTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVL 551
Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVAND--DAHPQ--RAMIHKKWREISEKIKQIGYV 476
+ ++ G+ PAC+WVE + H F++ D D++ + + I++K E+ E+I + GY
Sbjct: 552 ETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYS 611
Query: 477 PDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFA 536
+ H+L D++E E + HSEKLA+A+ L++TP + + I +N R+C +CH +F
Sbjct: 612 EEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFI 671
Query: 537 SKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
S V RE++VRD +RFHHF++G CSCG YW
Sbjct: 672 SLVTGREMVVRDASRFHHFKEGKCSCGGYW 701
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/526 (39%), Positives = 323/526 (61%), Gaps = 7/526 (1%)
Query: 46 ARKLFD--EMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGL-KPNQFTLSSVLKA 102
A K+F E P+ ++ W LI GY++ +A L+ +M GL +P+ T ++KA
Sbjct: 72 AHKVFSKIEKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 103 SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVS 162
A D + G +H+ ++ G+ +YV +SLL +YA + A+ +F + K+ V+
Sbjct: 131 VTTMA-DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189
Query: 163 WNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVI 222
WN++I G A + E+AL ++EM +G +P F+ S+ +A A G+L GK VH ++I
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249
Query: 223 KSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVR 282
K G N L+D+YA+ G +E+A+ +F+ ++ ++ VSW S++ G A +G GK +
Sbjct: 250 KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIE 309
Query: 283 WFEKMLRN-GIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDL 340
F+ M G+ P ++TF+ +L ACSH G++ EG YF M++ + +EP H+ VDL
Sbjct: 310 LFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDL 369
Query: 341 LGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400
L RAG + +A ++I+ MP++P +W LLGAC +H + +L +A +I +L+P+ SG +
Sbjct: 370 LARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDY 429
Query: 401 ILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIH 460
+LL+N+YAS R +D + RK M GVKK P S VE N VH F+ D +HPQ I+
Sbjct: 430 VLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIY 489
Query: 461 KKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIK 520
K +E++ +++ GYVP S+V +++E+E + HSEK+A+AF LISTP S I +
Sbjct: 490 AKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVV 549
Query: 521 KNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
KN+RVC DCH A K SKV REI+VRD +RFHHF++G CSC DYW
Sbjct: 550 KNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 164/278 (58%), Gaps = 8/278 (2%)
Query: 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWT 62
T + ++ +H+ ++ S F + I +QN++L+ YA CG + A K+FD+MP KD+V W
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGATDDKFGRQVHAFCL 121
++I+G+++N +PE A+ L+++M G+KP+ FT+ S+L A + GA G++VH + +
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL--TLGKRVHVYMI 249
Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
K G N++ + LLD+YAR ++++A LF + KN VSW +LI G A G++A+
Sbjct: 250 KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIE 309
Query: 182 TFSEM-LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGN--TLVD 238
F M EG P ++ + A + G +++G + + ++ ++ + + +VD
Sbjct: 310 LFKYMESTEGLLPCEITFVGILYACSHCGMVKEG-FEYFRRMREEYKIEPRIEHFGCMVD 368
Query: 239 MYAKSGSIEDA-EKVFNRLLKRDVVSWNSMLTGCAQHG 275
+ A++G ++ A E + + ++ +VV W ++L C HG
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 7/263 (2%)
Query: 114 RQVHAFCLKYGYDW-NVYVGSSLLDMYARFDQ---MDDAWFLFTALESK-NEVSWNALIA 168
RQ+HAF +++G + +G L+ M A +F+ +E N WN LI
Sbjct: 34 RQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIR 93
Query: 169 GHARKSEGEKALRTFSEMLREGF-EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQ 227
G+A A + EM G EP +Y + A+ + + G+ +H+ VI+SG
Sbjct: 94 GYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFG 153
Query: 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKM 287
+ +V N+L+ +YA G + A KVF+++ ++D+V+WNS++ G A++G + + + +M
Sbjct: 154 SLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM 213
Query: 288 LRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL 347
GI P+ T + +L+AC+ G L G+ M K G+ +DL R G +
Sbjct: 214 NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRV 273
Query: 348 DRALKFIREMPIEPTAAVWGALL 370
+ A EM ++ + W +L+
Sbjct: 274 EEAKTLFDEM-VDKNSVSWTSLI 295
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 21/248 (8%)
Query: 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
C + L + VH +++ ++ N +L+ YA+CG ++EA+ LFDEM K+ V+W
Sbjct: 232 CAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291
Query: 62 TALISGYSQNDQPENAIILFSQMLRL-GLKPNQFTLSSVLKA-SGAGATDDKFG--RQVH 117
T+LI G + N + AI LF M GL P + T +L A S G + F R++
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR 351
Query: 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK-NEVSWNALIAGHARKSEG 176
+Y + + ++D+ AR Q+ A+ ++ + N V W L+ A G
Sbjct: 352 E---EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG--ACTVHG 406
Query: 177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW-----VHAHVIKSGGQLVAF 231
+ L F+ + EP H S + L++ + EQ +W + +++ G + V
Sbjct: 407 DSDLAEFARIQILQLEPNH---SGDYVLLSNMYASEQ-RWSDVQKIRKQMLRDGVKKVP- 461
Query: 232 VGNTLVDM 239
G++LV++
Sbjct: 462 -GHSLVEV 468
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,871,066
Number of Sequences: 539616
Number of extensions: 8773737
Number of successful extensions: 29333
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 21328
Number of HSP's gapped (non-prelim): 2362
length of query: 566
length of database: 191,569,459
effective HSP length: 123
effective length of query: 443
effective length of database: 125,196,691
effective search space: 55462134113
effective search space used: 55462134113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)