Query 047067
Match_columns 566
No_of_seqs 768 out of 4074
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4E-118 9E-123 957.6 64.6 565 1-566 132-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 6E-113 1E-117 938.9 63.3 560 1-564 297-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 9.1E-73 2E-77 621.0 42.0 552 1-559 95-677 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.7E-62 8.1E-67 527.4 51.7 511 5-545 383-912 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2E-61 4.3E-66 521.7 52.1 430 1-433 446-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 9.9E-62 2.1E-66 521.4 41.7 489 55-560 84-582 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-26 7E-31 256.7 48.0 416 3-428 442-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-25 2.4E-30 252.4 49.4 414 3-426 408-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.3E-29 2.8E-34 201.7 7.3 106 433-556 2-116 (116)
10 KOG4626 O-linked N-acetylgluco 99.9 1.8E-20 4E-25 180.9 32.3 378 27-415 116-508 (966)
11 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.4E-25 182.4 28.8 358 58-427 116-486 (966)
12 PRK11447 cellulose synthase su 99.9 1.5E-18 3.3E-23 196.4 48.6 413 4-430 281-745 (1157)
13 PRK11788 tetratricopeptide rep 99.9 5.4E-20 1.2E-24 185.7 31.5 295 136-433 42-354 (389)
14 PRK11447 cellulose synthase su 99.9 4.4E-18 9.6E-23 192.7 48.3 187 234-427 465-701 (1157)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-18 1.1E-22 180.6 43.4 250 173-426 307-571 (615)
16 PRK11788 tetratricopeptide rep 99.8 2.5E-18 5.3E-23 173.6 30.5 283 37-357 45-344 (389)
17 PRK15174 Vi polysaccharide exp 99.8 7.9E-17 1.7E-21 170.9 42.0 368 39-426 17-403 (656)
18 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.8E-21 172.9 43.0 395 24-426 12-456 (765)
19 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.6E-21 171.3 42.4 390 4-400 27-464 (765)
20 PRK15174 Vi polysaccharide exp 99.8 4.6E-16 9.9E-21 165.2 39.2 327 94-427 43-382 (656)
21 PRK09782 bacteriophage N4 rece 99.8 4.7E-15 1E-19 161.1 47.1 212 210-427 491-707 (987)
22 PRK14574 hmsH outer membrane p 99.8 3.5E-15 7.6E-20 158.9 44.2 418 3-427 45-514 (822)
23 PRK09782 bacteriophage N4 rece 99.8 3.7E-15 8.1E-20 161.9 43.4 263 159-429 476-743 (987)
24 TIGR00990 3a0801s09 mitochondr 99.7 3.9E-14 8.4E-19 150.9 41.7 386 31-426 131-537 (615)
25 PRK14574 hmsH outer membrane p 99.7 4.6E-13 1E-17 142.8 42.2 385 34-426 41-479 (822)
26 KOG4422 Uncharacterized conser 99.7 1.2E-12 2.6E-17 122.2 39.1 391 4-428 127-592 (625)
27 KOG2002 TPR-containing nuclear 99.6 2.3E-12 4.9E-17 132.1 33.2 413 8-427 252-746 (1018)
28 PF13429 TPR_15: Tetratricopep 99.6 3.3E-15 7.1E-20 143.0 11.3 257 166-425 14-276 (280)
29 KOG2003 TPR repeat-containing 99.6 1E-12 2.2E-17 123.3 26.0 204 207-413 502-710 (840)
30 KOG2076 RNA polymerase III tra 99.6 2.1E-11 4.6E-16 124.3 36.1 328 105-436 151-522 (895)
31 PRK10747 putative protoheme IX 99.5 1.3E-11 2.8E-16 123.8 31.0 275 142-425 97-389 (398)
32 KOG4422 Uncharacterized conser 99.5 9.9E-11 2.2E-15 109.6 33.2 351 23-393 203-591 (625)
33 KOG2002 TPR-containing nuclear 99.5 1E-10 2.2E-15 120.2 35.8 424 8-441 146-608 (1018)
34 KOG1915 Cell cycle control pro 99.5 5.7E-10 1.2E-14 105.9 37.2 391 38-436 84-510 (677)
35 KOG0495 HAT repeat protein [RN 99.5 1.6E-09 3.4E-14 106.9 40.7 396 6-412 390-802 (913)
36 KOG1126 DNA-binding cell divis 99.5 6.3E-12 1.4E-16 124.2 23.1 276 144-426 334-620 (638)
37 KOG0495 HAT repeat protein [RN 99.5 1.6E-09 3.5E-14 106.8 39.3 428 2-439 416-891 (913)
38 KOG2076 RNA polymerase III tra 99.5 1.2E-09 2.5E-14 111.9 39.1 344 6-354 153-549 (895)
39 PRK10747 putative protoheme IX 99.5 7.1E-11 1.5E-15 118.4 30.3 220 168-393 161-391 (398)
40 KOG1126 DNA-binding cell divis 99.5 9.1E-12 2E-16 123.1 23.1 245 174-425 333-585 (638)
41 KOG1155 Anaphase-promoting com 99.5 8.9E-10 1.9E-14 104.5 35.1 252 170-425 237-494 (559)
42 KOG1155 Anaphase-promoting com 99.5 4.7E-10 1E-14 106.3 31.8 372 23-425 160-552 (559)
43 KOG1915 Cell cycle control pro 99.5 2.7E-09 5.8E-14 101.5 36.5 390 6-405 87-548 (677)
44 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.4E-15 117.7 29.5 252 137-391 126-398 (409)
45 PF13429 TPR_15: Tetratricopep 99.4 1.3E-12 2.9E-17 125.0 13.5 249 32-320 13-272 (280)
46 TIGR00540 hemY_coli hemY prote 99.4 7.1E-10 1.5E-14 111.8 33.6 282 139-425 94-398 (409)
47 KOG0547 Translocase of outer m 99.4 7.5E-10 1.6E-14 105.6 31.0 215 206-425 337-565 (606)
48 KOG4318 Bicoid mRNA stability 99.4 7.2E-10 1.6E-14 112.8 29.3 400 13-436 11-603 (1088)
49 KOG2003 TPR repeat-containing 99.4 2.3E-09 5E-14 101.2 30.2 359 61-425 279-688 (840)
50 KOG1173 Anaphase-promoting com 99.4 4.8E-09 1E-13 102.1 33.1 405 10-425 34-517 (611)
51 COG2956 Predicted N-acetylgluc 99.4 7.7E-10 1.7E-14 100.3 25.0 298 143-446 49-367 (389)
52 TIGR02521 type_IV_pilW type IV 99.4 4E-10 8.7E-15 104.6 24.4 197 228-425 29-231 (234)
53 PF13041 PPR_2: PPR repeat fam 99.3 2.1E-12 4.7E-17 87.1 6.1 50 56-105 1-50 (50)
54 KOG4318 Bicoid mRNA stability 99.3 5E-11 1.1E-15 121.0 17.9 271 181-491 11-283 (1088)
55 COG3071 HemY Uncharacterized e 99.3 5.6E-09 1.2E-13 97.7 29.1 292 64-391 88-389 (400)
56 COG3071 HemY Uncharacterized e 99.3 6.2E-09 1.3E-13 97.4 28.6 275 142-425 97-389 (400)
57 COG2956 Predicted N-acetylgluc 99.3 6.7E-09 1.4E-13 94.3 27.8 285 71-391 48-346 (389)
58 PF13041 PPR_2: PPR repeat fam 99.3 7.6E-12 1.6E-16 84.4 6.8 50 259-308 1-50 (50)
59 PRK12370 invasion protein regu 99.3 1.6E-09 3.4E-14 113.6 26.7 258 159-427 255-536 (553)
60 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.1E-14 106.2 26.4 231 195-425 199-478 (508)
61 KOG4162 Predicted calmodulin-b 99.2 9.4E-08 2E-12 96.6 33.5 409 22-436 318-792 (799)
62 KOG1174 Anaphase-promoting com 99.2 4.4E-07 9.5E-12 85.3 35.1 366 27-397 97-505 (564)
63 TIGR02521 type_IV_pilW type IV 99.2 8.3E-09 1.8E-13 95.7 24.5 189 162-354 33-226 (234)
64 KOG1840 Kinesin light chain [C 99.2 1.7E-08 3.7E-13 101.2 26.4 235 126-391 196-478 (508)
65 PRK11189 lipoprotein NlpI; Pro 99.1 1.6E-08 3.4E-13 97.1 23.2 211 209-427 40-266 (296)
66 KOG1173 Anaphase-promoting com 99.1 1E-07 2.2E-12 93.1 27.9 275 125-404 240-530 (611)
67 PRK12370 invasion protein regu 99.1 1.4E-08 3E-13 106.5 24.3 226 194-425 255-501 (553)
68 KOG1129 TPR repeat-containing 99.1 3.1E-09 6.7E-14 96.4 16.3 227 164-426 227-458 (478)
69 KOG1129 TPR repeat-containing 99.1 7.6E-09 1.6E-13 93.9 16.6 195 229-427 222-425 (478)
70 PRK11189 lipoprotein NlpI; Pro 99.0 1.6E-07 3.5E-12 90.2 25.8 218 174-398 40-271 (296)
71 KOG2047 mRNA splicing factor [ 99.0 1.1E-05 2.3E-10 80.4 37.0 413 7-424 117-613 (835)
72 KOG0547 Translocase of outer m 99.0 5.6E-07 1.2E-11 86.5 26.8 342 61-426 118-491 (606)
73 PF12569 NARP1: NMDA receptor- 99.0 8.2E-06 1.8E-10 83.2 36.6 406 4-422 16-516 (517)
74 COG3063 PilF Tfp pilus assembl 99.0 6.9E-08 1.5E-12 84.0 18.4 162 264-428 38-204 (250)
75 KOG1125 TPR repeat-containing 99.0 2.4E-08 5.2E-13 97.7 16.6 218 205-425 295-526 (579)
76 KOG2376 Signal recognition par 99.0 2.8E-05 6E-10 76.9 37.4 280 137-422 183-516 (652)
77 KOG1174 Anaphase-promoting com 99.0 1.2E-05 2.6E-10 75.9 33.2 260 159-426 231-500 (564)
78 KOG1156 N-terminal acetyltrans 98.9 5.8E-06 1.2E-10 82.4 31.6 423 5-439 20-486 (700)
79 KOG2047 mRNA splicing factor [ 98.9 3.1E-05 6.8E-10 77.2 34.7 173 27-206 102-292 (835)
80 KOG0548 Molecular co-chaperone 98.9 9.5E-07 2.1E-11 86.1 24.0 394 4-427 14-456 (539)
81 PF12569 NARP1: NMDA receptor- 98.9 1.7E-06 3.7E-11 88.1 26.4 158 279-439 129-309 (517)
82 KOG3785 Uncharacterized conser 98.9 2.5E-06 5.5E-11 78.7 24.6 403 6-427 36-491 (557)
83 COG3063 PilF Tfp pilus assembl 98.9 1.8E-06 3.9E-11 75.3 22.3 201 162-396 37-240 (250)
84 KOG4162 Predicted calmodulin-b 98.9 0.00013 2.7E-09 74.6 38.3 101 123-223 317-422 (799)
85 KOG0624 dsRNA-activated protei 98.8 1.7E-05 3.6E-10 73.2 29.0 295 128-427 37-371 (504)
86 PF04733 Coatomer_E: Coatomer 98.8 1.4E-07 3.1E-12 89.3 16.4 244 141-425 13-264 (290)
87 cd05804 StaR_like StaR_like; a 98.8 1.2E-05 2.6E-10 80.0 31.3 294 131-427 8-337 (355)
88 KOG4340 Uncharacterized conser 98.8 6.1E-06 1.3E-10 74.5 24.0 380 30-425 13-442 (459)
89 KOG3785 Uncharacterized conser 98.8 7.1E-05 1.5E-09 69.4 30.2 402 4-432 69-520 (557)
90 PRK04841 transcriptional regul 98.7 2.5E-05 5.3E-10 88.2 32.3 297 131-427 411-761 (903)
91 KOG3616 Selective LIM binding 98.7 1.7E-05 3.8E-10 79.9 26.7 192 202-421 739-932 (1636)
92 PRK04841 transcriptional regul 98.7 0.00012 2.6E-09 82.6 37.5 363 32-395 346-763 (903)
93 KOG0985 Vesicle coat protein c 98.7 6E-05 1.3E-09 78.8 30.1 239 160-423 1104-1367(1666)
94 cd05804 StaR_like StaR_like; a 98.6 0.00011 2.4E-09 73.1 31.3 250 139-392 53-336 (355)
95 PRK10370 formate-dependent nit 98.6 2.5E-06 5.5E-11 76.3 17.3 118 309-427 52-174 (198)
96 TIGR03302 OM_YfiO outer membra 98.6 4.3E-06 9.3E-11 77.8 19.0 180 228-426 31-232 (235)
97 KOG0624 dsRNA-activated protei 98.6 0.00014 3E-09 67.3 27.6 328 33-427 44-395 (504)
98 KOG1070 rRNA processing protei 98.6 6.4E-06 1.4E-10 88.7 21.5 199 227-429 1455-1666(1710)
99 PF12854 PPR_1: PPR repeat 98.6 7.2E-08 1.6E-12 58.3 4.3 33 124-156 2-34 (34)
100 PLN02789 farnesyltranstransfer 98.6 3E-05 6.6E-10 74.5 24.6 229 162-424 39-300 (320)
101 PF12854 PPR_1: PPR repeat 98.6 6.5E-08 1.4E-12 58.5 3.8 33 22-54 2-34 (34)
102 PRK15359 type III secretion sy 98.6 1.6E-06 3.5E-11 73.3 13.8 109 299-408 27-137 (144)
103 KOG0985 Vesicle coat protein c 98.6 0.0017 3.7E-08 68.5 37.4 143 260-422 1103-1245(1666)
104 KOG4340 Uncharacterized conser 98.6 2.6E-05 5.7E-10 70.5 21.5 179 243-423 125-336 (459)
105 KOG1156 N-terminal acetyltrans 98.6 0.00081 1.7E-08 67.7 33.2 401 5-421 54-494 (700)
106 KOG2376 Signal recognition par 98.5 0.00097 2.1E-08 66.4 33.1 375 34-425 19-486 (652)
107 KOG3616 Selective LIM binding 98.5 0.00023 4.9E-09 72.2 28.8 255 140-426 743-1024(1636)
108 PRK15363 pathogenicity island 98.5 4.1E-06 8.9E-11 69.7 13.5 95 331-425 35-131 (157)
109 PRK15359 type III secretion sy 98.5 1.8E-06 4E-11 73.0 11.8 94 334-427 27-122 (144)
110 KOG3617 WD40 and TPR repeat-co 98.5 0.00014 3.1E-09 74.5 25.8 357 25-422 724-1170(1416)
111 KOG1127 TPR repeat-containing 98.5 0.00015 3.2E-09 76.1 26.2 378 27-422 492-909 (1238)
112 PF04733 Coatomer_E: Coatomer 98.4 2.1E-05 4.5E-10 74.6 18.0 216 134-357 40-262 (290)
113 PRK10370 formate-dependent nit 98.4 5.3E-05 1.1E-09 67.8 19.2 155 237-401 23-182 (198)
114 KOG1070 rRNA processing protei 98.4 9E-05 1.9E-09 80.2 23.5 227 195-424 1458-1698(1710)
115 KOG1125 TPR repeat-containing 98.4 2.9E-05 6.3E-10 76.7 18.3 245 169-416 294-561 (579)
116 KOG1128 Uncharacterized conser 98.4 6.8E-05 1.5E-09 76.1 21.2 216 125-357 394-613 (777)
117 KOG1128 Uncharacterized conser 98.4 2.2E-05 4.7E-10 79.6 17.3 189 226-428 394-584 (777)
118 PRK15179 Vi polysaccharide bio 98.4 5.1E-05 1.1E-09 80.5 21.0 188 200-402 33-227 (694)
119 KOG0548 Molecular co-chaperone 98.3 0.00016 3.5E-09 70.9 22.2 366 36-426 11-421 (539)
120 COG5010 TadD Flp pilus assembl 98.3 8.3E-05 1.8E-09 66.6 18.1 117 302-419 106-224 (257)
121 TIGR00756 PPR pentatricopeptid 98.3 1E-06 2.2E-11 54.1 4.1 35 59-93 1-35 (35)
122 TIGR03302 OM_YfiO outer membra 98.3 8.5E-05 1.8E-09 69.0 18.9 182 193-394 31-234 (235)
123 KOG1127 TPR repeat-containing 98.3 0.001 2.3E-08 70.0 27.6 174 247-424 800-994 (1238)
124 PLN02789 farnesyltranstransfer 98.3 0.0013 2.9E-08 63.3 26.7 176 130-308 38-229 (320)
125 KOG3617 WD40 and TPR repeat-co 98.3 0.00022 4.7E-09 73.3 21.6 151 55-221 723-884 (1416)
126 PRK14720 transcript cleavage f 98.2 0.00041 8.9E-09 74.6 24.6 45 364-408 224-268 (906)
127 COG5010 TadD Flp pilus assembl 98.2 9.8E-05 2.1E-09 66.1 16.7 135 293-428 63-199 (257)
128 TIGR02552 LcrH_SycD type III s 98.2 1.8E-05 3.9E-10 66.4 11.4 97 331-427 17-115 (135)
129 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.2E-11 52.4 4.5 35 262-296 1-35 (35)
130 PRK15179 Vi polysaccharide bio 98.2 0.0005 1.1E-08 73.1 23.4 144 225-371 81-230 (694)
131 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.8E-11 51.5 4.1 34 58-91 1-34 (34)
132 KOG3081 Vesicle coat complex C 98.1 0.00061 1.3E-08 61.2 19.5 88 338-425 180-270 (299)
133 PF13812 PPR_3: Pentatricopept 98.1 7.5E-06 1.6E-10 49.8 4.6 34 261-294 1-34 (34)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00021 4.6E-09 70.2 16.5 129 231-361 170-298 (395)
135 COG4783 Putative Zn-dependent 98.0 0.0019 4.1E-08 63.2 22.3 138 268-426 313-454 (484)
136 KOG3081 Vesicle coat complex C 98.0 0.0072 1.6E-07 54.5 23.5 246 142-397 21-276 (299)
137 TIGR02552 LcrH_SycD type III s 98.0 0.00027 5.9E-09 59.1 14.2 113 283-398 5-120 (135)
138 COG4783 Putative Zn-dependent 98.0 0.0012 2.7E-08 64.4 19.7 177 245-425 252-436 (484)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00027 5.8E-09 69.5 15.5 121 134-256 174-294 (395)
140 KOG3060 Uncharacterized conser 98.0 0.0023 5E-08 57.1 19.4 169 233-403 55-231 (289)
141 PRK14720 transcript cleavage f 97.9 0.0058 1.3E-07 66.0 25.9 171 55-290 28-198 (906)
142 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.9E-10 47.4 3.3 31 59-89 1-31 (31)
143 cd00189 TPR Tetratricopeptide 97.9 0.00016 3.4E-09 55.7 10.3 92 334-425 3-96 (100)
144 PF12895 Apc3: Anaphase-promot 97.9 1.7E-05 3.7E-10 60.1 4.4 78 344-422 2-83 (84)
145 PF13414 TPR_11: TPR repeat; P 97.9 4.5E-05 9.8E-10 55.2 6.4 64 362-425 2-66 (69)
146 PF01535 PPR: PPR repeat; Int 97.8 2.4E-05 5.2E-10 46.3 3.5 31 262-292 1-31 (31)
147 KOG2053 Mitochondrial inherita 97.8 0.066 1.4E-06 56.5 39.7 409 5-431 22-507 (932)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0003 6.5E-09 57.2 11.2 93 334-426 5-105 (119)
149 PF09976 TPR_21: Tetratricopep 97.8 0.002 4.3E-08 54.6 16.3 84 274-357 24-111 (145)
150 PLN03088 SGT1, suppressor of 97.8 0.00034 7.4E-09 69.0 13.2 84 342-425 13-98 (356)
151 PF04840 Vps16_C: Vps16, C-ter 97.8 0.038 8.3E-07 53.2 29.4 122 234-374 181-302 (319)
152 KOG1914 mRNA cleavage and poly 97.8 0.051 1.1E-06 54.1 37.5 394 24-423 17-536 (656)
153 PF09976 TPR_21: Tetratricopep 97.7 0.0025 5.5E-08 53.9 15.7 122 163-286 15-143 (145)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00088 1.9E-08 54.4 12.3 101 299-399 5-112 (119)
155 PF13432 TPR_16: Tetratricopep 97.7 0.00013 2.8E-09 52.0 6.0 58 369-426 3-60 (65)
156 PRK10153 DNA-binding transcrip 97.6 0.0031 6.6E-08 65.1 17.4 140 257-426 333-482 (517)
157 KOG0553 TPR repeat-containing 97.6 0.00061 1.3E-08 62.4 10.8 108 306-414 91-200 (304)
158 KOG0553 TPR repeat-containing 97.6 0.0002 4.3E-09 65.5 7.3 87 339-425 89-177 (304)
159 KOG0550 Molecular chaperone (D 97.6 0.0021 4.5E-08 61.4 14.3 266 136-428 56-352 (486)
160 PRK02603 photosystem I assembl 97.6 0.00083 1.8E-08 58.9 11.1 81 332-412 36-121 (172)
161 PLN03088 SGT1, suppressor of 97.6 0.0014 2.9E-08 64.8 13.7 105 305-410 11-117 (356)
162 PRK02603 photosystem I assembl 97.6 0.0024 5.2E-08 55.9 13.7 131 260-412 34-166 (172)
163 CHL00033 ycf3 photosystem I as 97.5 0.00098 2.1E-08 58.2 11.0 95 330-424 34-140 (168)
164 KOG3060 Uncharacterized conser 97.5 0.012 2.7E-07 52.7 17.4 162 263-427 54-221 (289)
165 COG4235 Cytochrome c biogenesi 97.5 0.001 2.2E-08 61.4 11.0 102 328-429 153-259 (287)
166 KOG1538 Uncharacterized conser 97.5 0.045 9.6E-07 55.5 22.8 182 118-363 624-806 (1081)
167 KOG2053 Mitochondrial inherita 97.5 0.085 1.8E-06 55.7 25.5 211 142-357 22-252 (932)
168 PF13432 TPR_16: Tetratricopep 97.5 0.00034 7.3E-09 49.9 5.9 61 337-397 3-65 (65)
169 PF05843 Suf: Suppressor of fo 97.5 0.0051 1.1E-07 58.5 15.6 134 262-397 2-141 (280)
170 PF13371 TPR_9: Tetratricopept 97.5 0.00044 9.5E-09 50.6 6.6 58 370-427 2-59 (73)
171 PF14938 SNAP: Soluble NSF att 97.4 0.013 2.8E-07 55.9 17.5 110 236-357 100-222 (282)
172 PF14559 TPR_19: Tetratricopep 97.4 0.00024 5.1E-09 51.2 4.3 53 374-426 2-54 (68)
173 cd00189 TPR Tetratricopeptide 97.4 0.0024 5.2E-08 48.8 10.4 57 264-321 3-59 (100)
174 KOG1914 mRNA cleavage and poly 97.4 0.19 4.1E-06 50.2 30.6 367 55-429 17-467 (656)
175 PRK15331 chaperone protein Sic 97.3 0.0024 5.3E-08 53.6 10.1 89 337-425 43-133 (165)
176 PRK10866 outer membrane biogen 97.3 0.083 1.8E-06 49.0 20.8 171 135-320 38-236 (243)
177 PF12895 Apc3: Anaphase-promot 97.3 0.0009 1.9E-08 50.6 6.4 81 274-356 2-83 (84)
178 COG4700 Uncharacterized protei 97.2 0.05 1.1E-06 46.4 16.7 131 292-425 85-221 (251)
179 PF13431 TPR_17: Tetratricopep 97.2 0.00022 4.8E-09 42.9 2.2 32 386-417 2-33 (34)
180 PF14938 SNAP: Soluble NSF att 97.2 0.056 1.2E-06 51.6 19.3 124 235-358 119-264 (282)
181 PF13414 TPR_11: TPR repeat; P 97.2 0.00077 1.7E-08 48.7 5.0 65 330-394 2-69 (69)
182 PF04840 Vps16_C: Vps16, C-ter 97.2 0.25 5.4E-06 47.7 24.8 111 297-423 178-288 (319)
183 PF06239 ECSIT: Evolutionarily 97.2 0.005 1.1E-07 54.1 10.5 97 250-346 34-153 (228)
184 PF10037 MRP-S27: Mitochondria 97.2 0.0058 1.3E-07 60.6 12.3 55 265-319 107-161 (429)
185 PF08579 RPM2: Mitochondrial r 97.1 0.0089 1.9E-07 46.5 10.5 81 162-242 27-116 (120)
186 PF14559 TPR_19: Tetratricopep 97.1 0.00048 1E-08 49.6 3.5 55 343-397 3-59 (68)
187 KOG1130 Predicted G-alpha GTPa 97.1 0.0041 8.8E-08 59.3 10.3 127 298-424 197-342 (639)
188 PRK15363 pathogenicity island 97.1 0.02 4.4E-07 48.0 13.2 93 160-255 35-128 (157)
189 CHL00033 ycf3 photosystem I as 97.1 0.013 2.9E-07 51.0 13.0 81 160-241 35-117 (168)
190 PF08579 RPM2: Mitochondrial r 97.1 0.013 2.8E-07 45.6 11.0 79 265-343 29-116 (120)
191 PF05843 Suf: Suppressor of fo 97.1 0.022 4.8E-07 54.1 15.2 126 162-289 3-135 (280)
192 PF12688 TPR_5: Tetratrico pep 97.0 0.023 4.9E-07 45.9 12.6 104 166-269 7-114 (120)
193 PF10037 MRP-S27: Mitochondria 97.0 0.0077 1.7E-07 59.7 11.7 116 128-243 65-186 (429)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0034 7.4E-08 61.6 8.8 63 363-425 75-140 (453)
195 PF12688 TPR_5: Tetratrico pep 97.0 0.011 2.3E-07 47.7 10.2 88 337-424 7-102 (120)
196 COG4700 Uncharacterized protei 97.0 0.052 1.1E-06 46.3 14.4 103 326-428 84-191 (251)
197 KOG2796 Uncharacterized conser 96.9 0.13 2.9E-06 46.4 17.2 231 160-396 69-319 (366)
198 PRK10803 tol-pal system protei 96.9 0.0076 1.6E-07 56.3 10.2 96 331-426 143-246 (263)
199 COG3898 Uncharacterized membra 96.9 0.45 9.9E-06 45.7 24.8 270 142-426 97-392 (531)
200 PF13371 TPR_9: Tetratricopept 96.8 0.004 8.7E-08 45.4 6.3 64 338-401 2-67 (73)
201 KOG2796 Uncharacterized conser 96.8 0.35 7.5E-06 43.9 19.1 237 58-302 69-325 (366)
202 PF06239 ECSIT: Evolutionarily 96.8 0.015 3.2E-07 51.2 10.3 97 149-245 34-153 (228)
203 PRK10153 DNA-binding transcrip 96.8 0.09 2E-06 54.4 18.0 61 295-357 419-479 (517)
204 PRK10866 outer membrane biogen 96.8 0.16 3.4E-06 47.1 17.8 185 236-424 38-239 (243)
205 PF13428 TPR_14: Tetratricopep 96.7 0.0031 6.8E-08 40.7 4.4 42 364-405 2-43 (44)
206 PF03704 BTAD: Bacterial trans 96.6 0.0074 1.6E-07 51.2 7.0 69 364-432 63-136 (146)
207 PF13424 TPR_12: Tetratricopep 96.4 0.0058 1.3E-07 45.3 4.8 62 364-425 6-74 (78)
208 KOG0543 FKBP-type peptidyl-pro 96.4 0.048 1E-06 52.6 11.8 64 363-426 257-320 (397)
209 KOG2041 WD40 repeat protein [G 96.3 1.7 3.7E-05 45.1 27.8 62 24-87 689-763 (1189)
210 PF13281 DUF4071: Domain of un 96.3 0.69 1.5E-05 45.2 19.1 159 236-396 147-338 (374)
211 PF13424 TPR_12: Tetratricopep 96.2 0.008 1.7E-07 44.5 4.6 61 332-392 6-75 (78)
212 KOG4555 TPR repeat-containing 96.2 0.046 1E-06 43.6 8.7 90 339-428 51-146 (175)
213 PF07079 DUF1347: Protein of u 96.2 1.4 3.1E-05 43.3 36.8 407 4-423 18-521 (549)
214 KOG2280 Vacuolar assembly/sort 96.2 2.1 4.5E-05 44.9 27.0 108 234-356 688-795 (829)
215 PRK10803 tol-pal system protei 96.1 0.12 2.5E-06 48.5 12.5 90 308-397 155-251 (263)
216 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.6 3.5E-05 42.9 28.8 364 24-397 39-536 (660)
217 COG0457 NrfG FOG: TPR repeat [ 96.0 1.2 2.5E-05 40.3 27.5 196 230-426 59-265 (291)
218 PF09205 DUF1955: Domain of un 95.9 0.24 5.3E-06 39.8 11.5 140 272-429 13-152 (161)
219 PF13512 TPR_18: Tetratricopep 95.8 0.28 6E-06 40.5 11.9 61 338-398 17-82 (142)
220 KOG1538 Uncharacterized conser 95.8 0.69 1.5E-05 47.3 16.8 55 195-258 747-801 (1081)
221 PF13525 YfiO: Outer membrane 95.8 1.3 2.9E-05 39.7 17.8 172 238-417 13-198 (203)
222 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.065 1.4E-06 52.9 9.3 96 330-428 74-176 (453)
223 PF13281 DUF4071: Domain of un 95.7 2 4.2E-05 42.1 19.0 72 134-205 146-227 (374)
224 KOG0550 Molecular chaperone (D 95.6 1.3 2.9E-05 43.0 17.2 88 307-395 260-353 (486)
225 KOG1130 Predicted G-alpha GTPa 95.5 0.44 9.5E-06 46.0 13.8 130 262-391 196-343 (639)
226 PRK11906 transcriptional regul 95.4 1.2 2.6E-05 44.4 16.8 175 244-421 232-431 (458)
227 KOG0543 FKBP-type peptidyl-pro 95.4 0.23 4.9E-06 48.1 11.5 137 268-425 215-354 (397)
228 PF12921 ATP13: Mitochondrial 95.4 0.16 3.4E-06 41.5 9.1 47 327-373 48-98 (126)
229 COG4235 Cytochrome c biogenesi 95.4 0.41 8.9E-06 44.6 12.8 43 248-290 211-256 (287)
230 KOG3941 Intermediate in Toll s 95.3 0.18 3.9E-06 46.1 9.8 100 249-348 53-175 (406)
231 KOG1920 IkappaB kinase complex 95.2 5.2 0.00011 44.4 22.0 93 236-357 958-1052(1265)
232 KOG1920 IkappaB kinase complex 95.1 7 0.00015 43.5 26.4 27 130-156 791-819 (1265)
233 PF03704 BTAD: Bacterial trans 95.0 0.16 3.5E-06 42.9 8.7 66 233-298 65-138 (146)
234 COG1729 Uncharacterized protei 94.9 0.22 4.8E-06 45.7 9.4 91 333-426 144-244 (262)
235 PF12921 ATP13: Mitochondrial 94.9 0.35 7.7E-06 39.4 9.7 95 230-340 2-97 (126)
236 PF00515 TPR_1: Tetratricopept 94.8 0.058 1.3E-06 32.2 4.0 32 364-395 2-33 (34)
237 PF13525 YfiO: Outer membrane 94.7 3 6.6E-05 37.4 20.0 59 166-224 11-71 (203)
238 KOG3941 Intermediate in Toll s 94.7 0.33 7.1E-06 44.5 9.8 98 148-245 53-173 (406)
239 COG0457 NrfG FOG: TPR repeat [ 94.6 3.2 7E-05 37.3 26.4 198 196-395 60-268 (291)
240 PF04053 Coatomer_WDAD: Coatom 94.6 1.3 2.7E-05 45.0 15.0 133 197-358 297-429 (443)
241 PF07719 TPR_2: Tetratricopept 94.5 0.11 2.3E-06 30.9 4.7 33 364-396 2-34 (34)
242 smart00299 CLH Clathrin heavy 94.4 2.6 5.6E-05 35.2 14.5 42 200-242 12-53 (140)
243 COG3898 Uncharacterized membra 94.3 5.5 0.00012 38.7 28.4 285 60-357 84-389 (531)
244 PF04184 ST7: ST7 protein; In 94.3 1 2.2E-05 45.0 13.0 150 272-432 179-330 (539)
245 PRK11906 transcriptional regul 94.2 0.82 1.8E-05 45.5 12.3 127 300-426 257-401 (458)
246 PRK15331 chaperone protein Sic 94.2 0.45 9.7E-06 40.3 9.0 84 240-324 47-133 (165)
247 KOG1941 Acetylcholine receptor 94.1 0.75 1.6E-05 43.8 11.2 46 170-215 16-63 (518)
248 COG3118 Thioredoxin domain-con 94.1 5.2 0.00011 37.4 16.8 33 391-423 230-262 (304)
249 PF04053 Coatomer_WDAD: Coatom 93.8 2.2 4.8E-05 43.3 14.9 133 269-427 269-403 (443)
250 smart00299 CLH Clathrin heavy 93.8 3.4 7.4E-05 34.4 15.0 122 234-374 11-136 (140)
251 KOG2280 Vacuolar assembly/sort 93.7 11 0.00024 39.9 26.8 326 63-422 442-795 (829)
252 KOG2610 Uncharacterized conser 93.6 2.2 4.8E-05 40.3 13.1 113 243-357 116-235 (491)
253 PF10300 DUF3808: Protein of u 93.5 3.3 7.1E-05 42.6 15.7 114 276-391 248-375 (468)
254 COG4105 ComL DNA uptake lipopr 93.3 6.1 0.00013 36.2 15.1 163 139-321 44-229 (254)
255 PF04184 ST7: ST7 protein; In 93.0 8.5 0.00018 38.8 16.8 99 299-397 262-380 (539)
256 KOG4234 TPR repeat-containing 92.8 0.42 9.1E-06 41.5 6.7 89 339-427 103-198 (271)
257 COG5107 RNA14 Pre-mRNA 3'-end 92.8 11 0.00024 37.4 28.2 128 297-425 398-530 (660)
258 KOG2114 Vacuolar assembly/sort 92.4 6.3 0.00014 42.1 15.7 140 237-388 375-515 (933)
259 KOG1258 mRNA processing protei 92.4 15 0.00032 37.9 28.7 382 28-412 46-490 (577)
260 PRK09687 putative lyase; Provi 92.2 11 0.00024 35.8 27.4 80 127-208 35-118 (280)
261 KOG2041 WD40 repeat protein [G 92.2 17 0.00038 38.1 24.9 37 40-81 747-783 (1189)
262 COG3629 DnrI DNA-binding trans 92.1 1.2 2.6E-05 41.6 9.4 76 230-305 153-236 (280)
263 KOG4555 TPR repeat-containing 92.1 0.49 1.1E-05 38.0 5.8 56 371-426 51-106 (175)
264 KOG2066 Vacuolar assembly/sort 92.1 19 0.00041 38.4 25.8 69 300-379 638-706 (846)
265 COG4785 NlpI Lipoprotein NlpI, 92.0 8.6 0.00019 34.2 14.5 160 261-428 99-268 (297)
266 COG3629 DnrI DNA-binding trans 91.9 0.9 2E-05 42.5 8.3 62 364-425 154-215 (280)
267 KOG1585 Protein required for f 91.8 9.9 0.00022 34.5 17.4 50 368-418 195-248 (308)
268 PF13176 TPR_7: Tetratricopept 91.7 0.36 7.9E-06 29.3 3.8 26 399-424 1-26 (36)
269 COG3118 Thioredoxin domain-con 91.3 13 0.00028 34.9 17.8 117 203-323 142-264 (304)
270 PF13181 TPR_8: Tetratricopept 91.3 0.38 8.2E-06 28.5 3.6 31 365-395 3-33 (34)
271 PF13170 DUF4003: Protein of u 90.9 15 0.00034 35.0 16.0 49 177-225 79-133 (297)
272 COG4649 Uncharacterized protei 90.7 3.6 7.7E-05 35.1 9.7 49 140-188 69-122 (221)
273 KOG1464 COP9 signalosome, subu 90.5 14 0.00031 34.0 15.9 241 142-393 40-329 (440)
274 COG1729 Uncharacterized protei 90.4 2.9 6.3E-05 38.6 9.9 55 264-319 145-201 (262)
275 PF13176 TPR_7: Tetratricopept 90.4 0.5 1.1E-05 28.6 3.6 28 365-392 1-28 (36)
276 PF13170 DUF4003: Protein of u 89.8 8.8 0.00019 36.7 13.2 91 145-237 119-224 (297)
277 PF00515 TPR_1: Tetratricopept 89.8 0.85 1.8E-05 27.0 4.3 28 262-289 2-29 (34)
278 PF10300 DUF3808: Protein of u 89.6 28 0.0006 36.0 24.1 76 112-189 251-334 (468)
279 KOG4648 Uncharacterized conser 89.5 0.67 1.5E-05 43.7 5.2 110 304-419 105-217 (536)
280 KOG2610 Uncharacterized conser 89.5 20 0.00043 34.2 16.4 158 172-331 115-283 (491)
281 PF13428 TPR_14: Tetratricopep 89.4 1.3 2.8E-05 28.2 5.2 28 263-290 3-30 (44)
282 PF02259 FAT: FAT domain; Int 89.4 23 0.0005 34.8 20.8 149 259-409 144-304 (352)
283 PRK11619 lytic murein transgly 89.3 35 0.00076 36.7 32.9 94 115-210 84-178 (644)
284 KOG1941 Acetylcholine receptor 89.1 23 0.00049 34.3 16.6 43 140-182 17-65 (518)
285 PRK09687 putative lyase; Provi 89.1 21 0.00045 33.9 28.0 236 54-307 33-278 (280)
286 PF09205 DUF1955: Domain of un 89.0 11 0.00024 30.7 13.4 65 263-328 88-152 (161)
287 PF08631 SPO22: Meiosis protei 88.8 22 0.00048 33.7 24.6 19 372-390 255-273 (278)
288 KOG1550 Extracellular protein 88.6 36 0.00079 36.0 23.5 273 145-426 228-538 (552)
289 PF09613 HrpB1_HrpK: Bacterial 88.6 3.4 7.3E-05 35.0 8.2 48 376-423 23-70 (160)
290 PF07035 Mic1: Colon cancer-as 88.4 15 0.00033 31.5 13.1 133 78-223 14-148 (167)
291 PF09613 HrpB1_HrpK: Bacterial 88.4 6 0.00013 33.5 9.6 49 307-357 21-70 (160)
292 PF07035 Mic1: Colon cancer-as 88.3 16 0.00034 31.4 13.1 130 180-319 14-143 (167)
293 PF10602 RPN7: 26S proteasome 88.1 13 0.00028 32.5 12.1 55 233-287 39-99 (177)
294 PF13512 TPR_18: Tetratricopep 88.0 14 0.00031 30.7 11.5 68 240-307 20-93 (142)
295 TIGR02561 HrpB1_HrpK type III 88.0 3.4 7.4E-05 34.4 7.7 53 375-427 22-74 (153)
296 PRK10941 hypothetical protein; 87.9 4.3 9.3E-05 38.1 9.5 63 365-427 183-245 (269)
297 COG4105 ComL DNA uptake lipopr 87.8 22 0.00048 32.7 20.2 58 369-426 173-233 (254)
298 COG4649 Uncharacterized protei 87.8 11 0.00023 32.4 10.6 50 342-391 143-195 (221)
299 KOG2114 Vacuolar assembly/sort 87.5 46 0.001 36.0 21.7 75 337-412 711-786 (933)
300 KOG4570 Uncharacterized conser 87.1 5.6 0.00012 37.4 9.3 96 225-324 59-164 (418)
301 PF10602 RPN7: 26S proteasome 86.8 11 0.00024 32.9 10.9 94 262-357 37-139 (177)
302 PF07719 TPR_2: Tetratricopept 86.5 1.8 3.9E-05 25.4 4.3 27 263-289 3-29 (34)
303 PF13431 TPR_17: Tetratricopep 86.3 1.2 2.6E-05 26.5 3.3 31 16-47 3-33 (34)
304 KOG1586 Protein required for f 85.9 27 0.00058 31.7 14.2 60 340-399 163-231 (288)
305 PF02259 FAT: FAT domain; Int 85.9 37 0.0008 33.3 16.9 67 362-428 145-215 (352)
306 KOG4570 Uncharacterized conser 85.6 4.3 9.3E-05 38.1 7.8 98 124-225 59-165 (418)
307 PF14853 Fis1_TPR_C: Fis1 C-te 85.3 2.9 6.2E-05 28.0 5.0 31 369-399 7-37 (53)
308 KOG1550 Extracellular protein 84.9 50 0.0011 35.0 16.6 153 272-430 260-430 (552)
309 TIGR02508 type_III_yscG type I 84.2 15 0.00032 28.3 8.6 87 8-98 21-107 (115)
310 PF13374 TPR_10: Tetratricopep 84.2 2 4.3E-05 26.6 3.8 28 398-425 3-30 (42)
311 PF06552 TOM20_plant: Plant sp 84.1 3.9 8.5E-05 35.2 6.4 46 379-424 51-100 (186)
312 PF14853 Fis1_TPR_C: Fis1 C-te 83.9 7.6 0.00017 26.0 6.5 51 399-475 3-53 (53)
313 PF07721 TPR_4: Tetratricopept 83.7 1.6 3.5E-05 24.1 2.8 24 398-421 2-25 (26)
314 PF07079 DUF1347: Protein of u 83.3 53 0.0011 33.0 32.5 30 159-188 297-326 (549)
315 KOG4642 Chaperone-dependent E3 83.0 3.4 7.5E-05 37.2 5.8 81 345-425 24-106 (284)
316 TIGR02561 HrpB1_HrpK type III 82.5 11 0.00025 31.4 8.3 17 341-357 54-70 (153)
317 PF13181 TPR_8: Tetratricopept 82.0 3.2 7E-05 24.3 4.0 28 398-425 2-29 (34)
318 KOG0890 Protein kinase of the 82.0 1.4E+02 0.003 36.8 23.4 64 363-428 1670-1733(2382)
319 KOG0276 Vesicle coat complex C 81.6 25 0.00054 36.4 11.8 45 242-288 649-693 (794)
320 PF04910 Tcf25: Transcriptiona 81.4 21 0.00046 35.3 11.5 64 362-425 99-167 (360)
321 PF13374 TPR_10: Tetratricopep 81.4 3.8 8.3E-05 25.3 4.4 28 262-289 3-30 (42)
322 PF08631 SPO22: Meiosis protei 81.3 50 0.0011 31.3 24.2 21 404-424 253-273 (278)
323 KOG1586 Protein required for f 81.1 43 0.00093 30.4 13.8 14 242-255 26-39 (288)
324 TIGR02508 type_III_yscG type I 80.8 24 0.00051 27.2 9.5 84 112-199 23-106 (115)
325 PF00637 Clathrin: Region in C 80.7 0.76 1.6E-05 38.6 1.1 83 201-286 13-95 (143)
326 smart00028 TPR Tetratricopepti 80.5 3.8 8.2E-05 22.8 4.0 29 366-394 4-32 (34)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 80.5 15 0.00033 28.0 7.6 63 276-339 22-84 (103)
328 COG3947 Response regulator con 80.2 6.6 0.00014 36.5 6.8 59 367-425 283-341 (361)
329 KOG0890 Protein kinase of the 80.1 1.6E+02 0.0035 36.4 29.0 354 32-404 1388-1796(2382)
330 PF13174 TPR_6: Tetratricopept 80.1 3.2 6.9E-05 24.0 3.4 23 372-394 9-31 (33)
331 PF13174 TPR_6: Tetratricopept 80.0 2.7 5.8E-05 24.3 3.1 28 399-426 2-29 (33)
332 KOG1585 Protein required for f 79.5 50 0.0011 30.2 12.2 23 399-421 192-214 (308)
333 PF06552 TOM20_plant: Plant sp 79.4 24 0.00052 30.6 9.5 66 358-430 63-140 (186)
334 COG2976 Uncharacterized protei 79.2 44 0.00096 29.4 14.0 114 279-396 70-192 (207)
335 KOG0545 Aryl-hydrocarbon recep 78.7 34 0.00074 31.2 10.5 56 371-426 238-293 (329)
336 PF02284 COX5A: Cytochrome c o 78.6 13 0.00028 28.7 6.8 60 279-339 28-87 (108)
337 PF11207 DUF2989: Protein of u 78.6 13 0.00028 32.9 7.9 75 342-417 118-198 (203)
338 KOG0376 Serine-threonine phosp 77.6 4.7 0.0001 40.3 5.5 87 339-425 12-100 (476)
339 KOG3364 Membrane protein invol 77.6 14 0.00031 30.2 7.2 48 378-425 50-99 (149)
340 PF11207 DUF2989: Protein of u 77.4 22 0.00048 31.4 8.9 72 177-249 123-197 (203)
341 KOG1308 Hsp70-interacting prot 77.1 1.8 4E-05 41.0 2.4 89 344-432 127-217 (377)
342 PF04097 Nic96: Nup93/Nic96; 76.4 38 0.00082 36.4 12.4 64 133-196 115-188 (613)
343 PF13762 MNE1: Mitochondrial s 76.0 32 0.0007 28.7 9.2 80 29-108 41-130 (145)
344 PF07721 TPR_4: Tetratricopept 75.5 4.9 0.00011 22.1 3.0 21 31-51 5-25 (26)
345 PF02284 COX5A: Cytochrome c o 75.4 21 0.00046 27.6 7.2 48 356-403 38-85 (108)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 74.9 23 0.00051 27.0 7.2 46 177-222 24-69 (103)
347 COG1747 Uncharacterized N-term 74.8 1.1E+02 0.0023 31.5 22.9 172 229-405 65-247 (711)
348 PRK15180 Vi polysaccharide bio 74.6 50 0.0011 33.3 11.3 119 274-395 302-423 (831)
349 COG4455 ImpE Protein of avirul 74.4 13 0.00029 33.1 6.8 63 335-397 5-69 (273)
350 KOG3807 Predicted membrane pro 73.8 47 0.001 31.7 10.5 113 267-398 281-397 (556)
351 PF00637 Clathrin: Region in C 73.6 3.4 7.3E-05 34.6 3.1 77 5-84 20-96 (143)
352 PRK11619 lytic murein transgly 73.4 1.4E+02 0.003 32.3 36.9 188 231-432 313-511 (644)
353 KOG0276 Vesicle coat complex C 73.1 48 0.001 34.5 11.1 101 138-255 646-746 (794)
354 PRK13800 putative oxidoreducta 71.8 1.9E+02 0.004 33.0 26.3 257 148-425 623-880 (897)
355 KOG4648 Uncharacterized conser 71.3 20 0.00044 34.2 7.6 115 237-357 104-221 (536)
356 PF04910 Tcf25: Transcriptiona 70.7 1.2E+02 0.0025 30.2 17.5 54 304-357 111-165 (360)
357 COG2909 MalT ATP-dependent tra 70.2 1.8E+02 0.0038 32.1 20.9 194 240-436 425-657 (894)
358 PRK15180 Vi polysaccharide bio 69.7 29 0.00062 34.9 8.5 132 239-372 298-434 (831)
359 PF14561 TPR_20: Tetratricopep 69.2 16 0.00035 27.7 5.6 45 383-427 8-52 (90)
360 KOG4234 TPR repeat-containing 68.8 78 0.0017 28.1 10.0 59 339-397 142-202 (271)
361 PF09670 Cas_Cas02710: CRISPR- 68.5 1.1E+02 0.0023 30.6 12.8 52 272-324 142-197 (379)
362 KOG4507 Uncharacterized conser 68.2 14 0.00029 38.1 6.2 70 337-406 648-719 (886)
363 KOG4507 Uncharacterized conser 67.8 22 0.00047 36.7 7.4 133 293-427 568-706 (886)
364 PHA02875 ankyrin repeat protei 67.5 1.4E+02 0.0031 30.0 15.7 148 136-296 72-230 (413)
365 PF07163 Pex26: Pex26 protein; 67.2 64 0.0014 30.2 9.7 88 268-357 90-184 (309)
366 PRK10941 hypothetical protein; 66.7 47 0.001 31.2 9.2 67 334-400 184-252 (269)
367 TIGR03504 FimV_Cterm FimV C-te 66.5 10 0.00023 24.2 3.4 27 401-427 3-29 (44)
368 COG4455 ImpE Protein of avirul 66.4 30 0.00066 31.0 7.2 74 264-339 4-80 (273)
369 PF09986 DUF2225: Uncharacteri 65.3 44 0.00096 30.2 8.5 63 366-428 121-196 (214)
370 TIGR03504 FimV_Cterm FimV C-te 64.8 18 0.00038 23.1 4.2 24 267-290 5-28 (44)
371 PF11663 Toxin_YhaV: Toxin wit 63.3 11 0.00023 30.8 3.6 32 70-103 107-138 (140)
372 PRK13342 recombination factor 63.0 1.8E+02 0.0039 29.5 16.2 101 192-310 173-279 (413)
373 PF09477 Type_III_YscG: Bacter 62.9 72 0.0016 25.0 9.8 79 210-291 21-99 (116)
374 KOG4279 Serine/threonine prote 62.8 2.3E+02 0.0049 30.7 14.3 183 161-396 202-399 (1226)
375 smart00386 HAT HAT (Half-A-TPR 61.9 16 0.00035 20.6 3.6 29 377-405 1-29 (33)
376 COG3947 Response regulator con 61.6 1.5E+02 0.0032 28.1 13.7 57 233-289 282-341 (361)
377 PF04190 DUF410: Protein of un 61.2 1.4E+02 0.0031 27.9 16.5 36 127-162 88-123 (260)
378 PF10366 Vps39_1: Vacuolar sor 60.9 75 0.0016 25.1 8.1 27 162-188 41-67 (108)
379 PRK12798 chemotaxis protein; R 60.8 1.9E+02 0.004 29.0 22.7 179 243-424 125-322 (421)
380 cd08819 CARD_MDA5_2 Caspase ac 60.1 47 0.001 24.9 6.2 66 11-78 21-86 (88)
381 KOG1258 mRNA processing protei 59.5 2.3E+02 0.005 29.7 28.8 335 4-346 91-490 (577)
382 PRK13800 putative oxidoreducta 58.3 3.3E+02 0.0071 31.1 27.7 254 47-323 624-879 (897)
383 PF07163 Pex26: Pex26 protein; 58.1 1.1E+02 0.0024 28.7 9.6 57 167-223 90-146 (309)
384 PF11846 DUF3366: Domain of un 57.8 47 0.001 29.4 7.4 38 358-395 139-176 (193)
385 PF12862 Apc5: Anaphase-promot 57.6 35 0.00077 26.0 5.7 52 374-425 9-69 (94)
386 KOG0991 Replication factor C, 57.0 1.6E+02 0.0034 27.0 11.4 56 249-306 227-282 (333)
387 PF14863 Alkyl_sulf_dimr: Alky 57.0 57 0.0012 27.2 7.1 63 347-412 57-119 (141)
388 cd08819 CARD_MDA5_2 Caspase ac 56.8 82 0.0018 23.6 7.2 39 242-281 48-86 (88)
389 COG4976 Predicted methyltransf 56.3 19 0.00041 32.5 4.3 58 340-397 4-63 (287)
390 PF13762 MNE1: Mitochondrial s 56.1 1.2E+02 0.0026 25.4 10.4 50 260-309 78-128 (145)
391 PF10366 Vps39_1: Vacuolar sor 55.6 83 0.0018 24.8 7.5 28 262-289 40-67 (108)
392 PF09477 Type_III_YscG: Bacter 55.0 1E+02 0.0022 24.2 9.6 76 112-190 24-99 (116)
393 PHA02875 ankyrin repeat protei 55.0 1.2E+02 0.0025 30.7 10.7 66 14-79 17-86 (413)
394 PF06957 COPI_C: Coatomer (COP 54.6 67 0.0014 32.3 8.3 40 358-397 293-334 (422)
395 COG1747 Uncharacterized N-term 53.2 2.8E+02 0.006 28.7 21.6 160 159-325 65-234 (711)
396 PF10579 Rapsyn_N: Rapsyn N-te 52.0 41 0.0009 24.6 4.7 45 375-419 18-65 (80)
397 PF11848 DUF3368: Domain of un 50.3 68 0.0015 20.9 5.2 33 272-304 13-45 (48)
398 KOG4077 Cytochrome c oxidase, 49.4 1.4E+02 0.003 24.3 7.6 70 279-358 67-136 (149)
399 KOG2422 Uncharacterized conser 49.2 3.4E+02 0.0073 28.5 12.7 122 306-427 248-408 (665)
400 PF10579 Rapsyn_N: Rapsyn N-te 48.8 61 0.0013 23.8 5.1 47 273-319 18-66 (80)
401 cd08326 CARD_CASP9 Caspase act 48.4 53 0.0012 24.5 5.1 62 12-77 19-80 (84)
402 PF12862 Apc5: Anaphase-promot 48.3 69 0.0015 24.4 6.0 51 343-393 10-71 (94)
403 PRK10564 maltose regulon perip 47.7 35 0.00076 32.3 4.9 40 162-201 259-298 (303)
404 PF11848 DUF3368: Domain of un 45.1 76 0.0016 20.6 4.9 34 68-101 12-45 (48)
405 PF12968 DUF3856: Domain of Un 45.1 1.4E+02 0.003 24.1 6.9 21 403-423 106-126 (144)
406 PF00244 14-3-3: 14-3-3 protei 44.0 2.6E+02 0.0057 25.7 10.7 160 267-427 7-199 (236)
407 PRK10564 maltose regulon perip 43.9 49 0.0011 31.4 5.2 42 262-303 258-299 (303)
408 PF11663 Toxin_YhaV: Toxin wit 43.8 22 0.00048 29.0 2.6 32 273-306 107-138 (140)
409 cd00280 TRFH Telomeric Repeat 43.7 1.9E+02 0.0041 25.4 8.1 28 370-398 118-145 (200)
410 COG2976 Uncharacterized protei 43.5 2.4E+02 0.0051 25.1 15.0 89 203-291 97-189 (207)
411 KOG0551 Hsp90 co-chaperone CNS 43.0 1.2E+02 0.0026 29.2 7.5 88 334-421 84-177 (390)
412 KOG3824 Huntingtin interacting 43.0 45 0.00099 31.5 4.7 45 375-419 128-172 (472)
413 KOG0376 Serine-threonine phosp 42.9 48 0.0011 33.4 5.3 57 371-427 12-68 (476)
414 PF04097 Nic96: Nup93/Nic96; 42.0 4.8E+02 0.01 28.2 23.6 59 28-87 113-181 (613)
415 COG2912 Uncharacterized conser 41.1 75 0.0016 29.7 5.9 59 368-426 186-244 (269)
416 PF07720 TPR_3: Tetratricopept 40.4 84 0.0018 19.0 4.6 27 368-394 6-34 (36)
417 COG4976 Predicted methyltransf 40.2 52 0.0011 29.8 4.5 55 373-427 5-59 (287)
418 PF11846 DUF3366: Domain of un 39.8 1.1E+02 0.0025 26.9 6.9 30 328-357 141-170 (193)
419 KOG2300 Uncharacterized conser 39.7 4.4E+02 0.0095 27.1 20.3 144 146-289 299-473 (629)
420 PHA03100 ankyrin repeat protei 39.5 4.4E+02 0.0096 27.1 12.4 202 78-295 48-277 (480)
421 KOG4077 Cytochrome c oxidase, 38.0 2.2E+02 0.0048 23.2 7.1 46 112-157 67-112 (149)
422 PF11768 DUF3312: Protein of u 37.7 4E+02 0.0087 27.8 10.8 56 234-289 412-472 (545)
423 COG5108 RPO41 Mitochondrial DN 37.7 2.1E+02 0.0045 30.5 8.8 43 134-176 33-81 (1117)
424 COG0735 Fur Fe2+/Zn2+ uptake r 37.6 1.6E+02 0.0035 24.6 7.0 48 60-107 22-69 (145)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 37.4 2.2E+02 0.0049 23.1 8.0 42 381-422 81-124 (126)
426 PF14689 SPOB_a: Sensor_kinase 37.2 62 0.0013 22.4 3.7 25 265-289 27-51 (62)
427 cd08326 CARD_CASP9 Caspase act 37.0 1.7E+02 0.0038 21.8 6.3 41 139-179 40-80 (84)
428 PRK11639 zinc uptake transcrip 37.0 1.4E+02 0.0031 25.7 6.8 63 47-109 14-76 (169)
429 cd08332 CARD_CASP2 Caspase act 36.7 1.1E+02 0.0024 23.1 5.3 35 39-73 46-80 (90)
430 KOG0292 Vesicle coat complex C 36.6 48 0.001 36.1 4.4 95 274-392 606-701 (1202)
431 KOG0686 COP9 signalosome, subu 36.4 4.5E+02 0.0098 26.3 14.1 59 231-289 151-215 (466)
432 COG4785 NlpI Lipoprotein NlpI, 36.0 3.4E+02 0.0073 24.7 16.9 176 143-325 79-266 (297)
433 PF14561 TPR_20: Tetratricopep 36.0 1.9E+02 0.0041 21.8 8.3 62 362-423 21-85 (90)
434 KOG1308 Hsp70-interacting prot 35.7 14 0.0003 35.4 0.4 98 374-487 125-225 (377)
435 PF15015 NYD-SP12_N: Spermatog 35.7 91 0.002 31.0 5.7 27 371-397 236-262 (569)
436 PF14689 SPOB_a: Sensor_kinase 35.3 57 0.0012 22.6 3.3 30 159-188 22-51 (62)
437 PF10345 Cohesin_load: Cohesin 34.5 6.2E+02 0.013 27.3 28.1 189 90-289 27-253 (608)
438 PF08424 NRDE-2: NRDE-2, neces 33.9 4.5E+02 0.0097 25.5 14.8 29 299-327 157-185 (321)
439 KOG3824 Huntingtin interacting 33.9 65 0.0014 30.5 4.3 58 343-400 128-187 (472)
440 KOG0686 COP9 signalosome, subu 33.2 5.1E+02 0.011 26.0 13.9 59 130-188 151-215 (466)
441 PF11525 CopK: Copper resistan 32.5 16 0.00034 25.6 0.1 21 542-562 8-28 (73)
442 COG0735 Fur Fe2+/Zn2+ uptake r 32.5 2.9E+02 0.0063 23.1 7.8 41 166-206 26-66 (145)
443 PF10475 DUF2450: Protein of u 32.0 2.6E+02 0.0056 26.7 8.4 54 133-188 102-155 (291)
444 PRK14700 recombination factor 31.8 4.7E+02 0.01 25.1 9.9 49 162-210 125-176 (300)
445 COG2909 MalT ATP-dependent tra 31.3 7.8E+02 0.017 27.5 27.1 217 138-357 424-685 (894)
446 KOG1524 WD40 repeat-containing 31.1 2.5E+02 0.0054 29.0 7.9 89 330-421 572-668 (737)
447 COG5191 Uncharacterized conser 31.0 99 0.0021 29.5 4.9 74 329-402 105-181 (435)
448 PF13934 ELYS: Nuclear pore co 30.7 4.2E+02 0.0091 24.2 11.4 120 240-366 88-207 (226)
449 KOG2066 Vacuolar assembly/sort 30.7 7.6E+02 0.016 27.1 25.2 126 27-160 392-536 (846)
450 PF04034 DUF367: Domain of unk 30.1 3E+02 0.0066 22.4 7.5 59 331-389 66-125 (127)
451 PRK11639 zinc uptake transcrip 30.1 2.6E+02 0.0057 24.1 7.3 45 165-209 30-74 (169)
452 PF11817 Foie-gras_1: Foie gra 30.1 3.7E+02 0.008 24.9 8.9 53 267-319 184-241 (247)
453 PF10475 DUF2450: Protein of u 29.7 2.6E+02 0.0057 26.7 8.0 51 237-289 105-155 (291)
454 smart00638 LPD_N Lipoprotein N 29.5 7.1E+02 0.015 26.5 25.5 61 129-191 310-371 (574)
455 PF11123 DNA_Packaging_2: DNA 29.5 99 0.0021 22.2 3.6 31 9-40 14-44 (82)
456 PF04090 RNA_pol_I_TF: RNA pol 29.5 4.1E+02 0.0089 23.7 10.2 116 261-392 41-168 (199)
457 PF09454 Vps23_core: Vps23 cor 29.3 1.6E+02 0.0035 20.7 4.7 49 258-307 5-53 (65)
458 PF11838 ERAP1_C: ERAP1-like C 28.9 5.3E+02 0.011 24.7 17.9 81 312-392 146-230 (324)
459 PF08311 Mad3_BUB1_I: Mad3/BUB 28.6 3.2E+02 0.0069 22.2 8.3 42 213-254 81-123 (126)
460 PF11768 DUF3312: Protein of u 28.5 3.6E+02 0.0078 28.2 8.8 56 31-86 412-472 (545)
461 PF10255 Paf67: RNA polymerase 28.2 1.2E+02 0.0026 30.5 5.4 57 334-390 125-191 (404)
462 COG5108 RPO41 Mitochondrial DN 27.9 2.6E+02 0.0056 29.8 7.7 72 266-340 33-112 (1117)
463 KOG0292 Vesicle coat complex C 27.9 8.5E+02 0.018 27.3 11.5 131 238-391 651-781 (1202)
464 COG5187 RPN7 26S proteasome re 27.9 4.3E+02 0.0094 25.1 8.4 94 331-424 115-219 (412)
465 cd08323 CARD_APAF1 Caspase act 27.9 1.7E+02 0.0038 21.9 5.0 63 11-77 16-78 (86)
466 PF11817 Foie-gras_1: Foie gra 27.7 3.5E+02 0.0076 25.0 8.3 54 201-254 184-242 (247)
467 KOG2396 HAT (Half-A-TPR) repea 27.6 7.1E+02 0.015 25.8 20.7 289 44-364 268-565 (568)
468 TIGR02710 CRISPR-associated pr 27.4 6.3E+02 0.014 25.2 11.7 27 270-296 139-165 (380)
469 PF09670 Cas_Cas02710: CRISPR- 27.4 6.4E+02 0.014 25.2 12.6 55 169-224 140-198 (379)
470 PF02847 MA3: MA3 domain; Int 27.4 1.3E+02 0.0029 23.6 4.7 20 167-186 9-28 (113)
471 cd07153 Fur_like Ferric uptake 27.2 1.7E+02 0.0036 23.2 5.3 48 63-110 5-52 (116)
472 KOG2659 LisH motif-containing 27.0 4.9E+02 0.011 23.7 10.2 15 305-319 73-87 (228)
473 PLN03192 Voltage-dependent pot 26.6 6.5E+02 0.014 28.3 11.6 54 200-257 624-679 (823)
474 PRK13342 recombination factor 26.6 6.8E+02 0.015 25.3 17.8 48 162-209 229-279 (413)
475 KOG0508 Ankyrin repeat protein 26.6 3.8E+02 0.0081 27.4 8.2 47 358-404 331-383 (615)
476 COG0790 FOG: TPR repeat, SEL1 26.3 5.5E+02 0.012 24.2 20.0 50 376-428 204-268 (292)
477 PF13929 mRNA_stabil: mRNA sta 26.1 5.8E+02 0.013 24.3 15.8 157 79-255 98-263 (292)
478 KOG4642 Chaperone-dependent E3 26.0 5.3E+02 0.012 23.9 9.4 79 240-320 20-102 (284)
479 KOG3364 Membrane protein invol 25.7 3.9E+02 0.0085 22.2 10.1 70 328-397 29-105 (149)
480 KOG1464 COP9 signalosome, subu 25.7 5.6E+02 0.012 24.0 18.3 148 172-319 39-214 (440)
481 PF12796 Ank_2: Ankyrin repeat 25.5 1.5E+02 0.0033 21.7 4.6 12 40-51 7-18 (89)
482 KOG4279 Serine/threonine prote 25.4 2.9E+02 0.0063 30.0 7.6 110 262-374 202-334 (1226)
483 KOG4567 GTPase-activating prot 25.3 6.2E+02 0.013 24.4 9.9 41 216-256 264-304 (370)
484 PF12968 DUF3856: Domain of Un 25.3 3.7E+02 0.008 21.8 10.5 61 331-391 55-128 (144)
485 PRK13341 recombination factor 24.7 9.8E+02 0.021 26.5 16.6 107 190-310 192-307 (725)
486 COG5191 Uncharacterized conser 24.6 83 0.0018 29.9 3.3 77 360-438 104-181 (435)
487 PF08967 DUF1884: Domain of un 24.3 86 0.0019 23.0 2.6 26 456-481 7-32 (85)
488 cd00280 TRFH Telomeric Repeat 23.8 4.8E+02 0.01 23.0 7.4 36 337-372 117-152 (200)
489 smart00544 MA3 Domain in DAP-5 23.8 3.6E+02 0.0077 21.1 8.6 22 166-187 8-29 (113)
490 PF04762 IKI3: IKI3 family; I 23.8 8.8E+02 0.019 27.8 11.7 29 262-290 813-843 (928)
491 KOG4567 GTPase-activating prot 23.6 6.7E+02 0.014 24.2 9.9 73 281-358 263-345 (370)
492 PF10255 Paf67: RNA polymerase 23.5 2E+02 0.0044 28.9 6.0 54 235-288 127-191 (404)
493 PF04190 DUF410: Protein of un 23.4 6.2E+02 0.013 23.7 20.2 106 141-257 2-117 (260)
494 PF02847 MA3: MA3 domain; Int 23.3 2.5E+02 0.0054 21.9 5.7 21 236-256 8-28 (113)
495 TIGR02414 pepN_proteo aminopep 23.2 9.9E+02 0.022 27.1 11.9 58 362-419 772-836 (863)
496 PHA02537 M terminase endonucle 23.2 5.9E+02 0.013 23.4 9.7 22 272-293 94-115 (230)
497 PF07575 Nucleopor_Nup85: Nup8 23.1 7.6E+02 0.016 26.3 10.8 60 194-255 404-463 (566)
498 TIGR02270 conserved hypothetic 23.1 8E+02 0.017 24.9 26.1 121 228-358 159-279 (410)
499 KOG4521 Nuclear pore complex, 23.0 1.2E+03 0.027 27.1 13.7 105 237-348 927-1071(1480)
500 cd07153 Fur_like Ferric uptake 22.8 2.4E+02 0.0051 22.2 5.5 46 166-211 6-51 (116)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-118 Score=957.56 Aligned_cols=565 Identities=39% Similarity=0.720 Sum_probs=557.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL 80 (566)
Q Consensus 1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 80 (566)
+|++.++++.|+++|..|.+.|+.||+.++|.|+.+|+++|++++|+++|++|+.||+++||+||.+|++.|++++|+++
T Consensus 132 a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067 81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE 160 (566)
Q Consensus 81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 160 (566)
|++|.+.|+.||..||+.++.+|+..+... .++++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~ 290 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSAR-AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT 290 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHH-HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCCh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 240 (566)
++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.||..++++|+++|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 371 ~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred HHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hHH-hhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 321 LMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 321 ~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
.|. +.|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.|..+++++++++|++..+
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~ 530 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN 530 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence 665 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCC
Q 047067 400 HILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479 (566)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~ 479 (566)
|..|+++|++.|+|++|.++++.|+++|+.+.|++||+++++.+|.|.+||..||+..+|+..+.++..+|++.||.||+
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeEEEEccccccCCCchhhHhhhhhcCceEEEecCCccccccccc
Q 047067 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGF 559 (566)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~ 559 (566)
..+++++++++|+..+..|||+||++|||+++++++||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+
T Consensus 611 ~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~ 690 (697)
T PLN03081 611 NELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGK 690 (697)
T ss_pred chhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 047067 560 CSCGDYW 566 (566)
Q Consensus 560 cs~~~~~ 566 (566)
|||+|||
T Consensus 691 csc~d~w 697 (697)
T PLN03081 691 CSCGDYW 697 (697)
T ss_pred ccccccC
Confidence 9999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.2e-113 Score=938.90 Aligned_cols=560 Identities=41% Similarity=0.727 Sum_probs=550.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL 80 (566)
Q Consensus 1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 80 (566)
+|++.|+++.|+++|..+.+.|+.||+.+||+|+.+|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067 81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE 160 (566)
Q Consensus 81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 160 (566)
|++|.+.|+.||..||++++.+|++.|+.+ .+.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~-~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLD-VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHH-HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 240 (566)
++||+||.+|.++|+.++|+++|++|.. +++||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999986 599999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hHH-hhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 321 LMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 321 ~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
.|. +.|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++++++|+++..
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 776 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCC
Q 047067 400 HILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479 (566)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~ 479 (566)
|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++|+..|+++..+|++.||.||+
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeEEEEccccccCCCchhhHhhhhhcCceEEEecCCccccccccc
Q 047067 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGF 559 (566)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~ 559 (566)
..++ +.++++|+..++.|||+||++|||+++++++||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+
T Consensus 774 ~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~ 852 (857)
T PLN03077 774 SSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGE 852 (857)
T ss_pred chhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCc
Confidence 9877 557888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 047067 560 CSCGD 564 (566)
Q Consensus 560 cs~~~ 564 (566)
|||+|
T Consensus 853 csc~d 857 (857)
T PLN03077 853 CSCGD 857 (857)
T ss_pred ccCCC
Confidence 99998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.1e-73 Score=620.96 Aligned_cols=552 Identities=22% Similarity=0.390 Sum_probs=487.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL 80 (566)
Q Consensus 1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 80 (566)
+|.+.+.++.|.++|+.+++.|..+++.++|+|+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++
T Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~ 174 (857)
T PLN03077 95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174 (857)
T ss_pred HHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHH
Confidence 36677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067 81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE 160 (566)
Q Consensus 81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 160 (566)
|++|...|+.||.+||+++|++|+..++.. .++++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|+++|+
T Consensus 175 f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~ 253 (857)
T PLN03077 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLA-RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHhCCccchh-hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 240 (566)
++||+||.+|.+.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
.+.+.|+.|+..+|++|+++|+++|++++|.++|++|+ +||..+|++++.+|.++|+.++|..+|++|.+.-+.|..+|
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~ 492 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTL 492 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHH
Confidence 99999999999999999999999999999999999997 68999999999999999999999999999987555566788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeC-----C--------------EE---EEEEecCCCCcchHH
Q 047067 401 ILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETK-----N--------------AV---HMFVANDDAHPQRAM 458 (566)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~-----~--------------~~---~~f~~~~~~~~~~~~ 458 (566)
..++.+|++.|.++.+.+++..|.+.|+.++.......+. + .+ ...+.++..|++..+
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH
Confidence 8888888888888888888888877777654321100000 0 00 011234456666666
Q ss_pred HHHHHHHHHHHHHHcCcccCCCcccccccHHHHHhhhhh---hhHHHHHHHhhhcCCCCCeEEEEccccccCCCchhhHh
Q 047067 459 IHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQV---HSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKF 535 (566)
Q Consensus 459 ~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 535 (566)
+. +++++|.+.|+.||..++...+..+.+.+.+.. ..+.+...+|+.+...... ++++.+.++|+.++|.++
T Consensus 573 A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 573 AV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHH
Confidence 55 678889999999999888776666666655422 3344555677766544433 688999999999999999
Q ss_pred hhhhcCc------eEEEecCCccccccccc
Q 047067 536 ASKVVER------EIIVRDTNRFHHFRDGF 559 (566)
Q Consensus 536 ~~~~~~~------~~~~~~~~~~h~~~~g~ 559 (566)
|.+|+.+ ..++..|+.+.+.+.|+
T Consensus 648 ~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 648 INKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 9999743 23344555544444443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-62 Score=527.36 Aligned_cols=511 Identities=16% Similarity=0.200 Sum_probs=254.5
Q ss_pred CCCcHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHH
Q 047067 5 LKKLKEARIVHAHILGSAF-KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQ 83 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 83 (566)
.|++++|.++|+.|.+.|+ .++...++.++..|.+.|.+++|.++|+.|+.||..+||.||.+|++.|++++|.++|++
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 3445555555555555443 234444444455555555555555555555555555555555555555555555555555
Q ss_pred HHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC
Q 047067 84 MLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES----KN 159 (566)
Q Consensus 84 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~ 159 (566)
|.+.|+.||..+|+++|.+|++.|+.+ .+.++++.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd-~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVD-AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 555555555555555555555555555 5555555555555555555555555555555555555555555432 34
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLR--EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 237 (566)
.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 45555555555555555555555555543 3445555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 238 DMYAKSGSIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.|+.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 55555555555555555552 33445555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVELGAYAAERIF 390 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 390 (566)
+|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++| ++.||..+|++++.+|.+.|++++|.+++++|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555544444455555555555555555555555555555544 444555555555555555555555555555554
Q ss_pred hcC-CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcch-HHHHHHHHHHHH
Q 047067 391 ELD-PHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQR-AMIHKKWREISE 468 (566)
Q Consensus 391 ~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~-~~~~~~l~~~~~ 468 (566)
+.+ ..+..+|..|+.+|. ++++++..+.+.+.. |-.+ ++.. ..-......+++
T Consensus 782 k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~--------------------f~~g---~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS--------------------FDSG---RPQIENKWTSWALMVYR 836 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh--------------------hhcc---ccccccchHHHHHHHHH
Confidence 432 112234444443332 123333322222211 1000 0000 000122347889
Q ss_pred HHHHcCcccCCCcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeE--EEEccccccCCC-chhhHhhhhhcCceEE
Q 047067 469 KIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTI--HIKKNIRVCGDC-HSAFKFASKVVEREII 545 (566)
Q Consensus 469 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~c~~~-~~~~~~~~~~~~~~~~ 545 (566)
+|.+.|+.||..++...+....+.+.. .....+-..+++.+.+++... .+++.+ +.. ++|..++.+|..+.|+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCC
Confidence 999999999977665444221121111 123344455666665554332 344543 322 5799999988877544
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-61 Score=521.73 Aligned_cols=430 Identities=19% Similarity=0.251 Sum_probs=402.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCCccH
Q 047067 1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP----VKDMVTWTALISGYSQNDQPEN 76 (566)
Q Consensus 1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~ 76 (566)
+|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 477889999999999999999999999999999999999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067 77 AIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLK--YGYDWNVYVGSSLLDMYARFDQMDDAWFLFTA 154 (566)
Q Consensus 77 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 154 (566)
|+++|++|.+.|+.||..||+.+|.+|++.|+.+ .+.++++.|.+ .|+.||..+|++||.+|+++|++++|.++|+.
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d-eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD-RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999987 67899999999999999999999999999999
Q ss_pred CCC----CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067 155 LES----KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA 230 (566)
Q Consensus 155 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 230 (566)
|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 986 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhc----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 231 FVGNTLVDMYAKSGSIEDAEKVFNRL----LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
.+|++||++|+++|++++|.++|++| ..||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 47899999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh----hcC-------------------CHHHHHHHHHhC---CCC
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG----RAG-------------------LLDRALKFIREM---PIE 360 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~---~~~ 360 (566)
++.|++++|.++|..|.+.|+.||..+|++++.++. +++ ..++|..+|++| ++.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999997643 222 246799999999 899
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 047067 361 PTAAVWGALLGACRMHKNVELGAYAAERIFE-LDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPA 433 (566)
Q Consensus 361 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 433 (566)
||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999888888888888888877653 3455667999999988432 368999999999999988764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.9e-62 Score=521.39 Aligned_cols=489 Identities=20% Similarity=0.249 Sum_probs=426.1
Q ss_pred CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHH
Q 047067 55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133 (566)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 133 (566)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+ .+.++|..+.+.|+.||..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~-~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR-CVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHhCCCcchHHHH
Confidence 3467799999999999999999999999998864 7899999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ 213 (566)
Q Consensus 134 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 213 (566)
.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047067 214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA 293 (566)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 293 (566)
+.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047067 294 PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGAC 373 (566)
Q Consensus 294 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 373 (566)
||..||+.++.+|++.|++++|.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|. +||..+||+||.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 78999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCCceeEEEeCCEEEEEEecCC
Q 047067 374 RMHKNVELGAYAAERIFELD-PHDSGPHILLANIYASAGRLNDAARARKMMKE-SGVKKEPACSWVETKNAVHMFVANDD 451 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~f~~~~~ 451 (566)
.++|+.++|.++|++|.+.+ ..|..+|..++.+|++.|.+++|.++|+.|.+ .|+.|+..... ..+.+..
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~~l~ 473 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIELLG 473 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHHHHH
Confidence 99999999999999999754 33457999999999999999999999999986 68877653211 1112223
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCcccCCCcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeEEEEccccccCCCch
Q 047067 452 AHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHS 531 (566)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 531 (566)
..+..++ ..+.+++.++.||..++..-+..+.+.+.+..-.+.....+++.+...++.+.+++.+..+|+..+
T Consensus 474 r~G~~~e-------A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 474 REGLLDE-------AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred hcCCHHH-------HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 3344444 445566789999977665444444443332211111222345544444555667888999999999
Q ss_pred hhHhhhhhcCceEEE-------ecCCcccccccccc
Q 047067 532 AFKFASKVVEREIIV-------RDTNRFHHFRDGFC 560 (566)
Q Consensus 532 ~~~~~~~~~~~~~~~-------~~~~~~h~~~~g~c 560 (566)
|.+++.+|..+.+-. --.+..|.|-.|-.
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999999999886532 12345677765543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.2e-26 Score=256.73 Aligned_cols=416 Identities=14% Similarity=0.106 Sum_probs=341.8
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHH
Q 047067 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAII 79 (566)
Q Consensus 3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 79 (566)
.+.|+.+.|..++..+.+.. ++++.+++.+...|...|++++|.+.|+++. +.+...+..+...+...|++++|.+
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35688899999999888753 5678889999999999999999999999764 3456678888889999999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 047067 80 LFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES-- 157 (566)
Q Consensus 80 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 157 (566)
.|+++.+.. +.+..++..+...+...|+.+ .+...+..+.+.. +.+...+..++..|.+.|++++|..+++.+.+
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEE-EAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999998754 345677888888888888888 8888888887764 45667788889999999999999999988764
Q ss_pred -CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHH
Q 047067 158 -KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236 (566)
Q Consensus 158 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (566)
.+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 367789999999999999999999999988753 3456677788888889999999999999888765 5567788888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
...+...|++++|.++++.+.. .+...|..+...+...|++++|+..|+++... .|+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 9999999999999999988843 35677888888888999999999999998885 455577778888888899999
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
+|.+.+..+.... +.+...+..+...|.+.|++++|.+.|+++ ...| +..+++.+...+...|+ .+|+..++++++
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 9998886655543 456778888888888999999999998887 3333 56788888888888888 778888888888
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 392 LDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 392 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
+.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.1e-25 Score=252.36 Aligned_cols=414 Identities=13% Similarity=0.027 Sum_probs=355.3
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHH
Q 047067 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAII 79 (566)
Q Consensus 3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 79 (566)
...|+.+.|...+..+.+... .+......++..|.+.|++++|.++++.+. ++++.+|+.+...|...|++++|.+
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 356888999999999988753 345566778889999999999999999876 3467789999999999999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 047067 80 LFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES-- 157 (566)
Q Consensus 80 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 157 (566)
.|+++.+.. +.+...+..+...+...|+.+ .+...+..+.+.. +.+..++..+...|.+.|+.++|...|+++..
T Consensus 487 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 487 AFEKALSIE-PDFFPAAANLARIDIQEGNPD-DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998753 334556777788888899999 8999999988765 45778899999999999999999999998754
Q ss_pred -CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHH
Q 047067 158 -KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236 (566)
Q Consensus 158 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (566)
.+...+..++..|.+.|++++|+.+++++.... +.+..+|..+..++...|++++|...+..+.+.. +.+...+..+
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 356788889999999999999999999998753 5577889999999999999999999999998875 5567788889
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
..+|.+.|++++|...|+++. ..+..+|..++..+...|++++|..+++.+.+.. +++...+..+...+...|+++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence 999999999999999999874 3367899999999999999999999999998874 456778888889999999999
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
+|...+..+.... |+..++..+...+.+.|++++|.+.++++ ...| +...+..+...+...|+.++|...++++++
T Consensus 721 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 721 AAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999997766654 55577788999999999999999999888 3334 667888889999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 392 LDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 392 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
..|+++.++..++.+|...|+ ++|..+++++.+.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999999999999999 8899999998775
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=1.3e-29 Score=201.74 Aligned_cols=106 Identities=58% Similarity=1.021 Sum_probs=95.7
Q ss_pred ceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccccHHHH--------HhhhhhhhHHHHH
Q 047067 433 ACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQER--------EAKLQVHSEKLAL 504 (566)
Q Consensus 433 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 504 (566)
++||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+..|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899876 9999999999998 455677888999999998888777655 5678999999999
Q ss_pred HHhhhcCCCCCeEEEEccc-cccCCCchhhHhhhhhcCceEEEecCCcccccc
Q 047067 505 AFALISTPPGSTIHIKKNI-RVCGDCHSAFKFASKVVEREIIVRDTNRFHHFR 556 (566)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 556 (566)
+||++++ +|+||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 788998 999999999999999999999999999999997
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-20 Score=180.87 Aligned_cols=378 Identities=14% Similarity=0.122 Sum_probs=236.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHH-
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA- 102 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a- 102 (566)
..+|..+.+.+-..|++++|+.+++.+. +..+..|..+..++...|+.+.|...|.+.++ +.|+.+...+-+.-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHH
Confidence 4456666666666777777777776554 22455677777777777777777777766665 34554433322222
Q ss_pred HccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---hHHHHHHHHHHHhCCChhHH
Q 047067 103 SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN---EVSWNALIAGHARKSEGEKA 179 (566)
Q Consensus 103 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A 179 (566)
.-..|.+. ++...+..+++.. +.-..+|+.|...+-..|++..|+..|++...-| ..+|-.|...|-..+.+++|
T Consensus 194 lka~Grl~-ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLE-EAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccc-hhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 22234555 5555555555542 1224456666666666777777777777665433 34666666667777777777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 047067 180 LRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL- 257 (566)
Q Consensus 180 ~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 257 (566)
+..|.+... ..|+ ...+..+...|-.+|.+|.|...+++.++.. +.-...|+.|..++-..|++.+|.+.|++..
T Consensus 272 vs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 776666654 2343 3455556666666777777777777766654 3345566677777777777777777776653
Q ss_pred --CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHH
Q 047067 258 --KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAH 333 (566)
Q Consensus 258 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~ 333 (566)
.....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|...+++..+ +.|+ ...
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda 424 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA 424 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence 22455666677777777777777777777666 4554 44566666777777777777777755543 4554 346
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG 411 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 411 (566)
|+.+...|-..|+.+.|.+.+.+. .+.|.. ...+.|...|...|++.+|+..++..+++.|+.+.+|-.++.+..-..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 666667777777777777777665 555643 466667777777777777777777777777777777766666665555
Q ss_pred ChhH
Q 047067 412 RLND 415 (566)
Q Consensus 412 ~~~~ 415 (566)
+|.+
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 5554
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-20 Score=182.38 Aligned_cols=358 Identities=17% Similarity=0.228 Sum_probs=308.4
Q ss_pred cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchh-HHHHH
Q 047067 58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVY-VGSSL 135 (566)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~~l 135 (566)
..+|..+...+-..|+.++|+.+|+.|++. +|+ ...|..+-.++...|+.. .+-+.+...++. .|+.. ..+.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~-~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLE-LAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCc-ccHHHHHHHHhc--Ccchhhhhcch
Confidence 357888999999999999999999999985 564 568899999999999999 888888887775 45544 33456
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCh
Q 047067 136 LDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSL 211 (566)
Q Consensus 136 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~ 211 (566)
.......|++.+|...+.+..+. =.+.|+.|...+..+|+...|++-|++... +.|+ ...|..+...+...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcc
Confidence 66667789999999998876553 356899999999999999999999999987 4565 36888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067 212 EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKML 288 (566)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (566)
+.|...+.++.... +....++..+...|...|.++-|+..|++..+ | -...||.|..++-..|+..+|...|.+.+
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999887765 44566777788889999999999999999854 3 35799999999999999999999999999
Q ss_pred HcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-H
Q 047067 289 RNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-A 364 (566)
Q Consensus 289 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~ 364 (566)
. +.|+ ..+.+.|...+...|.+++|..+|..... +.|. ....+.|...|-..|++++|...+++. .++|+. .
T Consensus 348 ~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 348 R--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred H--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 8 4555 67889999999999999999999966554 3444 457888999999999999999999988 889976 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
.++.+.+.|...|+.+.|.+.+.++++.+|.-..++..|+.+|-..|+..+|+.-++...+..
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999987743
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.5e-18 Score=196.39 Aligned_cols=413 Identities=11% Similarity=0.043 Sum_probs=307.8
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC--CCc---chHHHH------------HH
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPV--KDM---VTWTAL------------IS 66 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~---~~~~~l------------i~ 66 (566)
..|++++|...+..+++.. +.+..++..|...|.+.|++++|+..|++... |+. ..|..+ ..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 4577888888888888764 44677788888888888888888888887642 221 123222 23
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 047067 67 GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMD 146 (566)
Q Consensus 67 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 146 (566)
.+.+.|++++|+..|++..+.. +.+...+..+-..+...|+.+ .+...+..+++.. +.+...+..+...|. .++.+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~-eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA-AAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 4667888888888888888752 233455666677777888888 8888888887764 334555666777664 45678
Q ss_pred HHHHHHHhCCCCC------------hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHH
Q 047067 147 DAWFLFTALESKN------------EVSWNALIAGHARKSEGEKALRTFSEMLREGFEP-THFSYSSVFTALASTGSLEQ 213 (566)
Q Consensus 147 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~ 213 (566)
+|..+++.++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 8888887765421 223455667788899999999999999875 34 45566778888999999999
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----h---------hHHHHHHHHHHHcCCHHHH
Q 047067 214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD----V---------VSWNSMLTGCAQHGLGKAT 280 (566)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A 280 (566)
|...++.+++.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999988765 3344455555666778899999999999875321 1 1123456678889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 047067 281 VRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI 359 (566)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 359 (566)
+.+++. .+++...+..+...+.+.|++++|...|+...... +.+...+..++..|...|++++|.+.++.. ..
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999872 34456677788889999999999999997766653 345778889999999999999999999987 44
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCChhHHHHHHHHHHh-CCCcc
Q 047067 360 EPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG------PHILLANIYASAGRLNDAARARKMMKE-SGVKK 430 (566)
Q Consensus 360 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~ 430 (566)
.|+ ...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|...+++... .|+.|
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 554 467777888899999999999999999988765543 555678999999999999999988853 44543
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.4e-20 Score=185.66 Aligned_cols=295 Identities=15% Similarity=0.098 Sum_probs=239.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccC
Q 047067 136 LDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT---HFSYSSVFTALASTG 209 (566)
Q Consensus 136 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~ 209 (566)
...+...|++++|...|.++.+. +..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567788999999999988753 456788888999999999999999999887542222 245777888889999
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCCHHHHH
Q 047067 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD--------VVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 281 (566)
+++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 4567788899999999999999999999885322 124566778888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 047067 282 RWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE 360 (566)
Q Consensus 282 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 360 (566)
..|+++.+.. +.+...+..+...+.+.|++++|.++++.+...+.......++.++.+|.+.|++++|...++++ ...
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998853 22456777888999999999999999977766543333567888999999999999999999998 556
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCc
Q 047067 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS---AGRLNDAARARKMMKESGVKKEPA 433 (566)
Q Consensus 361 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 433 (566)
|+...+..+...+...|++++|..+++++++..|++. .+..+...+.. .|+.+++..++++|.++++.++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 8777778889999999999999999999999999886 55555555543 569999999999999999999886
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=4.4e-18 Score=192.66 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=130.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH---------
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFL--------- 300 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~--------- 300 (566)
..+...+...|++++|++.|++..+ | +...+..+...|.+.|++++|+..|+++.+. .|+ ...+.
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC
Confidence 3455666666666666666666532 2 3445555666666666666666666666552 222 22222
Q ss_pred -----------------------------------HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC
Q 047067 301 -----------------------------------CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG 345 (566)
Q Consensus 301 -----------------------------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 345 (566)
.+...+...|+.++|..+++. .+++...+..+...|.+.|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 223344455566666655541 2345556677888889999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 346 LLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 346 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
++++|.+.|++. ...| +...+..+...+...|+.++|++.++++++..|+++..+..++.++...|++++|.++++++
T Consensus 618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999887 4455 46788888899999999999999999999988988888888999999999999999999988
Q ss_pred HhCC
Q 047067 424 KESG 427 (566)
Q Consensus 424 ~~~g 427 (566)
....
T Consensus 698 l~~~ 701 (1157)
T PRK11447 698 IPQA 701 (1157)
T ss_pred hhhC
Confidence 7654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.9e-18 Score=180.64 Aligned_cols=250 Identities=15% Similarity=0.111 Sum_probs=205.4
Q ss_pred CCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067 173 KSEGEKALRTFSEMLREG-FEP-THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE 250 (566)
Q Consensus 173 ~g~~~~A~~~~~~m~~~g-~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 250 (566)
.+++++|++.|++....+ ..| +...+..+...+...|++++|...++.+++.. +.....+..+..++...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 468999999999998765 334 34567777778889999999999999998875 344667888899999999999999
Q ss_pred HHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC
Q 047067 251 KVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG 326 (566)
Q Consensus 251 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 326 (566)
..|++.. ..+...|..+...+...|++++|+..|++.++. .| +...+..+..++.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9999874 346789999999999999999999999999985 45 4667778888899999999999999766553
Q ss_pred CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 327 VEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-------A-VWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
.+.+...++.+...+...|++++|.+.|++. .+.|+. . .++..+..+...|++++|...++++++++|++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 2445778889999999999999999999986 444421 1 122222334456999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 398 GPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
.++..++.+|...|++++|.+.+++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999999999998763
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.5e-18 Score=173.55 Aligned_cols=283 Identities=14% Similarity=0.149 Sum_probs=201.8
Q ss_pred HHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHH
Q 047067 37 YAKCGCLDEARKLFDEMPV---KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFG 113 (566)
Q Consensus 37 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 113 (566)
+...|++++|...|+++.. .+..+|..+...+.+.|++++|+.+++.+...+..++.
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------------------- 104 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE-------------------- 104 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH--------------------
Confidence 3445666666666665542 23334555555566666666666666555542110000
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047067 114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREG 190 (566)
Q Consensus 114 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 190 (566)
....++..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+.+...+
T Consensus 105 -------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 105 -------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 0123567778888888888888888888865 356788888888888999999999998888765
Q ss_pred CCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC--hh
Q 047067 191 FEPTH----FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RD--VV 262 (566)
Q Consensus 191 ~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~ 262 (566)
..++. ..+..+...+...|++++|...+.++.+.. +.+...+..+...|.+.|++++|.+.|+++.+ |+ ..
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 33322 234556677788889999999988888765 34556777788888899999999999988853 32 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG 342 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (566)
+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..++..+.+. .|+...+..++..+.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 6788888899999999999999988884 566666788888888899999999988655543 577778887777666
Q ss_pred h---cCCHHHHHHHHHhC
Q 047067 343 R---AGLLDRALKFIREM 357 (566)
Q Consensus 343 ~---~g~~~~A~~~~~~~ 357 (566)
. .|+.++|..+++++
T Consensus 327 ~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDL 344 (389)
T ss_pred hccCCccchhHHHHHHHH
Confidence 4 55888888888877
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=7.9e-17 Score=170.91 Aligned_cols=368 Identities=11% Similarity=-0.011 Sum_probs=284.5
Q ss_pred hcCChhHHHHHHccCCCC------CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHH
Q 047067 39 KCGCLDEARKLFDEMPVK------DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKF 112 (566)
Q Consensus 39 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 112 (566)
+..+++.-.-.|..-++. +..-...++..+.+.|++++|+.+++........+ ...+..+..+....|+.+ .
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~-~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD-A 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH-H
Confidence 566777776677666532 22334556778889999999999999988763222 334445556666789999 8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047067 113 GRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLRE 189 (566)
Q Consensus 113 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 189 (566)
+...++.+.+.. +.+...+..+...|.+.|++++|...|++... .+...|..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999988874 44567788899999999999999999998765 36778999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 047067 190 GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNS 266 (566)
Q Consensus 190 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 266 (566)
. |+.......+..+...|++++|...++.+++....++......+...+.+.|++++|+..|++... .+...+..
T Consensus 174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3 333222222345788899999999999988875444555556667889999999999999998743 36778888
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067 267 MLTGCAQHGLGKA----TVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL 341 (566)
Q Consensus 267 li~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 341 (566)
+...|.+.|++++ |+..|++..+. .| +...+..+...+...|++++|...++...... +.+...+..+...|
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l 328 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 9999999999986 89999999884 45 46688888999999999999999997766653 33455677788999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 342 GRAGLLDRALKFIREM-PIEPTAAVW-GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 342 ~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...++++++..|++. ...+++|...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~ 396 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLA 396 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHH
Confidence 9999999999999988 456765443 3456678999999999999999999999874 2344566666
Q ss_pred HHHHHhC
Q 047067 420 RKMMKES 426 (566)
Q Consensus 420 ~~~m~~~ 426 (566)
+....+.
T Consensus 397 ~~~~~~~ 403 (656)
T PRK15174 397 LDGQISA 403 (656)
T ss_pred HHHHHHh
Confidence 6666553
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.3e-16 Score=172.85 Aligned_cols=395 Identities=9% Similarity=-0.022 Sum_probs=292.9
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHH
Q 047067 24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPV---KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSV 99 (566)
Q Consensus 24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 99 (566)
+.++....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++.++. .|+ ...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34455556677788889999999999998763 33445888999999999999999999998875 344 4556667
Q ss_pred HHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-ChHHHHHHHHHHHhCCCh
Q 047067 100 LKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES--K-NEVSWNALIAGHARKSEG 176 (566)
Q Consensus 100 l~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 176 (566)
...+...++.+ .+...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...+..
T Consensus 90 a~~l~~~g~~~-eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYD-EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 77788889999 8888888888773 44555 88889999999999999999998765 2 566777788888899999
Q ss_pred hHHHHHHHHHHHCCCCCCHH------HHHHHHHHHh-----ccCCh---HHHHHHHHHHHHh-CCCCcHh-H-HHH---H
Q 047067 177 EKALRTFSEMLREGFEPTHF------SYSSVFTALA-----STGSL---EQGKWVHAHVIKS-GGQLVAF-V-GNT---L 236 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---l 236 (566)
++|++.++.... .|+.. ....++.... ..+.+ +.|.+.++.+++. ...|+.. . ... .
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999998876653 33320 1112222221 11223 6677788888764 2222221 1 111 1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC--hh--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcc
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKRD--VV--SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP---NQVTFLCVLTACSHA 309 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~ 309 (566)
+.++...|++++|++.|+.+.+.+ .. .--.+...|...|++++|+..|+++.+..... .......+..++...
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 234456799999999999986542 11 12225678999999999999999987643111 134566677788999
Q ss_pred CCHHHHHHHHHhHHhhCC-----------Ccc---HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067 310 GLLDEGQGYFALMKKHGV-----------EPE---EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC 373 (566)
Q Consensus 310 g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 373 (566)
|++++|..++..+..... .|+ ...+..+...+...|++++|.++++++ ...| +...+..+...+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999966554321 122 234566778899999999999999997 4455 567888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
...|++++|++.++++++++|+++..+..++..+...|++++|..+++.+.+.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999864
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.1e-16 Score=171.25 Aligned_cols=390 Identities=10% Similarity=0.033 Sum_probs=296.9
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC---CCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM---PVKDMVTWTALISGYSQNDQPENAIIL 80 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l 80 (566)
..|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++. .+.+...+..+...+...|++++|+..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3688899999999887643 455667889999999999999999999984 345677788899999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067 81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE 160 (566)
Q Consensus 81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 160 (566)
+++..+. .|+...+..+-.++...|+.. .+...+..+.+.. +.+..++..+..++.+.+..+.|.+.++.... ++
T Consensus 106 l~~~l~~--~P~~~~~~~la~~l~~~g~~~-~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 106 AKQLVSG--APDKANLLALAYVYKRAGRHW-DELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 9999876 454333777777888899999 9999999998875 34566667788899999999999999998776 21
Q ss_pred H--------HHHHHHHHHH-----hCCCh---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHhccCChHHHHHHH
Q 047067 161 V--------SWNALIAGHA-----RKSEG---EKALRTFSEMLRE-GFEPTHF-SYS----SVFTALASTGSLEQGKWVH 218 (566)
Q Consensus 161 ~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~~-t~~----~ll~~~~~~~~~~~a~~~~ 218 (566)
. ....++.... ..+++ ++|++.++.+... ...|+.. .+. ..+.++...+++++|...|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1 1222233222 12234 7789999998864 2233321 111 1134556779999999999
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047067 219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-------VVSWNSMLTGCAQHGLGKATVRWFEKMLRNG 291 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (566)
+.+.+.+.+........+..+|...|++++|+..|+++.+.+ ...+..+..++...|++++|+.+++++....
T Consensus 261 ~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 261 QRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 999987632122222336789999999999999999985432 2346667778899999999999999998752
Q ss_pred C-----------CCCH---HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 292 I-----------APNQ---VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 292 ~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
. .|+. ..+..+...+...|++++|+..++.+.... +.+...+..+...+...|++++|++.+++.
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 1332 244566778889999999999997666543 455778889999999999999999999988
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 358 -PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 358 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
.+.|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 66776 45667777788999999999999999999999998543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=4.6e-16 Score=165.15 Aligned_cols=327 Identities=10% Similarity=-0.040 Sum_probs=265.4
Q ss_pred hHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHH
Q 047067 94 FTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGH 170 (566)
Q Consensus 94 ~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 170 (566)
.-...++..+.+.|+.. .+..+....+...... ......++......|++++|...|+++.. .+...|..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~-~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETD-VGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcc-hhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34556677888899999 8998888888775433 44455556677789999999999999865 3667899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067 171 ARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE 250 (566)
Q Consensus 171 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 250 (566)
.+.|++++|+..|+++.... +.+...+..+..++...|++++|...+..+......+ ...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998752 3345677788899999999999999999887776433 3333333 3478899999999
Q ss_pred HHHHhcCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHhH
Q 047067 251 KVFNRLLKR----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDE----GQGYFALM 322 (566)
Q Consensus 251 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~ 322 (566)
..++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987543 33445556778899999999999999999853 2346677888899999999986 78888776
Q ss_pred HhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 323 KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
.... +.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++++.+|+++..+
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 6543 345778899999999999999999999988 45564 46778888999999999999999999999999988777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 401 ILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
..++.++...|++++|...+++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 778899999999999999999987754
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=4.7e-15 Score=161.15 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=155.6
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RDVVSWNSMLTGCAQHGLGKATVRWFEKM 287 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (566)
+.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++.
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444332 3333223334444577888888888876642 34445666677778888888888888888
Q ss_pred HHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HH
Q 047067 288 LRNGIAPNQ-VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AA 364 (566)
Q Consensus 288 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 364 (566)
++.. |+. ..+..+.......|++++|...+....+. .|+...|..+..++.+.|++++|...+++. ...|+ ..
T Consensus 569 L~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 569 EQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 7753 433 33333344445568999999998666654 456778888999999999999999999888 55674 46
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
.++.+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 778888889999999999999999999999999999999999999999999999999998643
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.5e-15 Score=158.87 Aligned_cols=418 Identities=11% Similarity=0.012 Sum_probs=300.4
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHH---HHHHHhCCCccHHHH
Q 047067 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTAL---ISGYSQNDQPENAII 79 (566)
Q Consensus 3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~ 79 (566)
.+.|+++.|...+..+++......+.++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3578889999999999887533223445 888888899999999999999887655444433 346778899999999
Q ss_pred HHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 047067 80 LFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES- 157 (566)
Q Consensus 80 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~- 157 (566)
+|+++.+. .|+ ...+..+...+...++.+ .+......+.+. .|+...+..++..+...++..+|.+.++++.+
T Consensus 124 ly~kaL~~--dP~n~~~l~gLa~~y~~~~q~~-eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 124 LWQSSLKK--DPTNPDLISGMIMTQADAGRGG-VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHhhcCCHH-HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999886 344 455566677778888888 777777777665 45555565666666556667669999988875
Q ss_pred -C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----hccCC---hHHHHHHHHHH
Q 047067 158 -K-NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS------YSSVFTAL-----ASTGS---LEQGKWVHAHV 221 (566)
Q Consensus 158 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t------~~~ll~~~-----~~~~~---~~~a~~~~~~~ 221 (566)
| +...+..+..+..+.|-...|+++..+-... +.|...- ....++.- ..... .+.|..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 5667788888899999998888776653211 1111111 11111111 01112 23344444444
Q ss_pred HHh-CC-CCcHhH-HHHH---HHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047067 222 IKS-GG-QLVAFV-GNTL---VDMYAKSGSIEDAEKVFNRLLKR----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG 291 (566)
Q Consensus 222 ~~~-~~-~~~~~~-~~~l---i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (566)
... +- ++.... ..+. +-++.+.|++.++++.|+.+... ...+--++..+|...+++++|+.+|+++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 442 11 222222 2233 44677889999999999999743 23455678899999999999999999997643
Q ss_pred -----CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-----------Ccc---HHHHHHHHHHhhhcCCHHHHHH
Q 047067 292 -----IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-----------EPE---EAHYVTFVDLLGRAGLLDRALK 352 (566)
Q Consensus 292 -----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~ 352 (566)
..++......|.-++..++++++|..+++.+.+... .|+ ...+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122344457889999999999999999966665211 122 2244556788899999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 353 FIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 353 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
.++++ ...| |...+..+...+...|++.+|++.++.+..++|++..+...++..+...|+|.+|..+.+...+.-
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99998 4455 777888999999999999999999999999999999999999999999999999999998887643
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.7e-15 Score=161.88 Aligned_cols=263 Identities=8% Similarity=-0.009 Sum_probs=214.2
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 238 (566)
+...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45567777777766 7888999988887764 477665555556667899999999999998665 344445567788
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047067 239 MYAKSGSIEDAEKVFNRLLKRDVVSWNSM---LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEG 315 (566)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 315 (566)
++.+.|++++|...|+...+.++..++.. .......|++++|+..|++..+ ..|+...+..+..++.+.|++++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998865544333333 3334455999999999999998 567888899999999999999999
Q ss_pred HHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067 316 QGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 393 (566)
...+....... +.+...++.+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++++
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99997766654 345677888889999999999999999988 5566 56789999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067 394 PHDSGPHILLANIYASAGRLNDAARARKMMKESGVK 429 (566)
Q Consensus 394 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 429 (566)
|++..+....+++.....+++.|.+-+++....++.
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999988887765543
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=3.9e-14 Score=150.88 Aligned_cols=386 Identities=10% Similarity=-0.038 Sum_probs=256.2
Q ss_pred HHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCC
Q 047067 31 NTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGA 107 (566)
Q Consensus 31 ~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 107 (566)
..+...|.+.|++++|.+.|++.. .|+...|..+..+|.+.|++++|++.+.+.++. .|+ ...+..+-.++...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcC
Confidence 345566777788888888887654 456667777777788888888888888777764 343 446666667777777
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 047067 108 TDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187 (566)
Q Consensus 108 ~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 187 (566)
+.+ .+..-+..+...+-..+... ..++.-+.+......+...++.-+. +..++..+.. |...........-+..-.
T Consensus 209 ~~~-eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 209 KYA-DALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CHH-HHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 777 56555544443321111111 1111111111112333444433222 2223332222 222222222222222111
Q ss_pred HCCCCCCH-HHHHHHHHH---HhccCChHHHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 047067 188 REGFEPTH-FSYSSVFTA---LASTGSLEQGKWVHAHVIKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R 259 (566)
Q Consensus 188 ~~g~~pd~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 259 (566)
. ..|+. ..+..+... ....+.+++|...++.+++.+ .+.....++.+...|...|++++|+..|++..+ |
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 11111 111111111 123467899999999998875 234556788889999999999999999999853 3
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH
Q 047067 260 -DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV 338 (566)
Q Consensus 260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 338 (566)
+..+|..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 45688889999999999999999999998852 2357788899999999999999999997766643 33566778889
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-------HHHHHHh
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHIL-------LANIYAS 409 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~ 409 (566)
..+.+.|++++|...|++. ...| +...|+.+...+...|++++|+..+++++++.|.+...+.. ....|..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999987 4455 46788999999999999999999999999999875443322 1223344
Q ss_pred cCChhHHHHHHHHHHhC
Q 047067 410 AGRLNDAARARKMMKES 426 (566)
Q Consensus 410 ~g~~~~a~~~~~~m~~~ 426 (566)
.|++++|.+++++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 521 KQDFIEAENLCEKALII 537 (615)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 79999999999998764
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=4.6e-13 Score=142.82 Aligned_cols=385 Identities=14% Similarity=0.063 Sum_probs=279.4
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcc---hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHH---HHHHHHHccCC
Q 047067 34 LNAYAKCGCLDEARKLFDEMPVKDMV---TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTL---SSVLKASGAGA 107 (566)
Q Consensus 34 i~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~~ 107 (566)
+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 44556899999999999998744433 23488899999999999999999988 3433333 33345677889
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHh--CCChhHHHHHHHH
Q 047067 108 TDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHAR--KSEGEKALRTFSE 185 (566)
Q Consensus 108 ~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~ 185 (566)
+.+ .|..+++.+.+.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.+++
T Consensus 117 dyd-~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWD-QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHH-HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999 9999999999875 34467777889999999999999999999887544332224444444 5666669999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHh------HHHHHHHHH---H--hcC---CHHHHHH
Q 047067 186 MLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAF------VGNTLVDMY---A--KSG---SIEDAEK 251 (566)
Q Consensus 186 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~---~--~~g---~~~~A~~ 251 (566)
+.+.. +-+...+.....+..+.|....|.++..+-... +.+... ....++..- . ... -.+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 99864 335666778888899999888887766542211 000000 000111000 0 111 2344444
Q ss_pred HHHhcCC-----CCh-h----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067 252 VFNRLLK-----RDV-V----SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL 321 (566)
Q Consensus 252 ~~~~~~~-----~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 321 (566)
-++.+.. |.. . ..--.+.++...|+..++++.|+.|...|.+....+-..+..+|...+.+++|..++..
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444432 211 1 22235677889999999999999999988765556888999999999999999999966
Q ss_pred HHhhC-----CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----C----------CCC--CHH-HHHHHHHHHHhcCCH
Q 047067 322 MKKHG-----VEPEEAHYVTFVDLLGRAGLLDRALKFIREM----P----------IEP--TAA-VWGALLGACRMHKNV 379 (566)
Q Consensus 322 ~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~----------~~p--~~~-~~~~ll~~~~~~g~~ 379 (566)
+.... .+++......|.-+|...+++++|..+++++ | -.| |-. ....++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 54432 2334555678899999999999999999988 2 012 222 334456778899999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 380 ELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
.+|++.+++++...|.|+.....+++++...|...+|.+.++.....
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999777654
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.2e-12 Score=122.19 Aligned_cols=391 Identities=15% Similarity=0.124 Sum_probs=225.3
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCCh-------------------------hHHHHHHccCCCC
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNA--YAKCGCL-------------------------DEARKLFDEMPVK 56 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~--~~~~g~~-------------------------~~A~~~f~~~~~~ 56 (566)
..|.++++--++++|...|.+.++.+--.|+.. |....++ +-|. ++-+..++
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~PK 205 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLPK 205 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcCC
Confidence 457788888999999999988777776666543 2222111 1133 33333455
Q ss_pred CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047067 57 DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLL 136 (566)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li 136 (566)
+..+|..||.|+++-...+.|.++|++-.+...+.+..+||.+|.+..-. .++.+...|+...+.||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 67899999999999999999999999998888899999999999876433 5678899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHH----HhCC----CCChHHHHHHHHHHHhCCChhH-HHHHHHHHHHC----CCCC----CHHHHH
Q 047067 137 DMYARFDQMDDAWFLF----TALE----SKNEVSWNALIAGHARKSEGEK-ALRTFSEMLRE----GFEP----THFSYS 199 (566)
Q Consensus 137 ~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~p----d~~t~~ 199 (566)
...++.|+++.|++.+ .+|+ +|...+|..+|..+.+.+++.+ |..+..+.... -++| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999988876543 2232 2455555555555555555533 22233332221 1222 334455
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 047067 200 SVFTALASTGSLEQGKWVHAHVIKSG----GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHG 275 (566)
Q Consensus 200 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 275 (566)
..++.|.+..+.+.|.+++.-+.... +.++.. ...-|..+....++..
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHHHHHHHHH
Confidence 55555555555555555554432211 111100 1122333444444445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CH-------
Q 047067 276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LL------- 347 (566)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~------- 347 (566)
..+.-+.+|+.|.-.-.-|+..+...+++|....+.++-..+++..+...|.........-+...+++.. ..
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 5555555555555544555555555555555555555555555544444443333222222223333222 00
Q ss_pred -HH-----HHHHH-------HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCch--HHHHHHHHH
Q 047067 348 -DR-----ALKFI-------REM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD---PHDSGP--HILLANIYA 408 (566)
Q Consensus 348 -~~-----A~~~~-------~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~--~~~l~~~~~ 408 (566)
.. |..++ .++ ..+......+..+..+.+.|..++|.+++..++... |..+.. ..-+.+.-.
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 00 11111 122 122344455555666677788888888887776432 433321 223444444
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 047067 409 SAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~g~ 428 (566)
.......|..+++.|...+.
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCc
Confidence 55667777777777766544
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.3e-12 Score=132.07 Aligned_cols=413 Identities=12% Similarity=0.080 Sum_probs=232.6
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCC------cchHHHHHHHHHhCCCccHHHHHH
Q 047067 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKD------MVTWTALISGYSQNDQPENAIILF 81 (566)
Q Consensus 8 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~ 81 (566)
+..|.+.+...-+.. ..+|.+.+.|.+.|.-.|++..+..+.+.+...+ ..+|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344445554444433 4566677777777777777777776666554222 234666777777777777777777
Q ss_pred HHHHHCCCCCChhH--HHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHHHHHHHHHhC
Q 047067 82 SQMLRLGLKPNQFT--LSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD----QMDDAWFLFTAL 155 (566)
Q Consensus 82 ~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~f~~~ 155 (566)
.+-.+. .||.++ +..+-..+...|++. .+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+.
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle-~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLE-ESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHH-HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 655543 344433 334555566667776 6666666666552 344555555555665553 344555555544
Q ss_pred CCC---ChHHHHHHHHHHHhCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---C
Q 047067 156 ESK---NEVSWNALIAGHARKSEGEKALRTFSEM----LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS---G 225 (566)
Q Consensus 156 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 225 (566)
.++ |..+|-.+...+-+..-+.. +..|... ...+-.+.....+.+.......|+++.|...|...... .
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 432 34444444444433322222 4444332 22333344455555555555555555555555544433 1
Q ss_pred CCCcH------h-HHH--------------------------HHHHHHHhc-------CCHHHHHHHHHhcC---CCChh
Q 047067 226 GQLVA------F-VGN--------------------------TLVDMYAKS-------GSIEDAEKVFNRLL---KRDVV 262 (566)
Q Consensus 226 ~~~~~------~-~~~--------------------------~li~~~~~~-------g~~~~A~~~~~~~~---~~~~~ 262 (566)
..++. . -|| ..|++|.+. +...+|...++... ..|+.
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 11111 0 111 122222222 23334444444432 23455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHhHHhhCCCc
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQVTFLCVLTACSH------------AGLLDEGQGYFALMKKHGVEP 329 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~p 329 (566)
.|.-+...+.....+..|.+-|....+.- ..+|..+...|.+.|.+ .+..+.|.++|..+.+.. +.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 56555556666666666666555544321 23566666666665543 234566777776555433 34
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD--PHDSGPHILLAN 405 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 405 (566)
|...-|-+.-.++..|++.+|.++|.+. ...-+..+|-.+..+|...|++-.|+++|+..+... .+++.+...|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 5556666777788888888888888877 212244678888888888888888888888887643 445667778888
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 047067 406 IYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 406 ~~~~~g~~~~a~~~~~~m~~~g 427 (566)
++.+.|++.+|.+.........
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhC
Confidence 8888888888888777776543
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=3.3e-15 Score=143.02 Aligned_cols=257 Identities=18% Similarity=0.134 Sum_probs=110.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 047067 166 LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSS-VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG 244 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 244 (566)
+...+.+.|++++|++++++......+|+...|.. +...+...++.+.|...++++...+. .+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 34556667777777777755443322344444443 33344556777777777777776653 255556666666 6788
Q ss_pred CHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067 245 SIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQVTFLCVLTACSHAGLLDEGQGYFAL 321 (566)
Q Consensus 245 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 321 (566)
++++|.+++...- .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887663 3466777888888899999999999999877543 345677788888888999999999999977
Q ss_pred HHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 322 MKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 322 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
..+.. +.+......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|+..++++.+..|+|+..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 66653 224667888999999999999988887766 113455678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 400 HILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
...++.++...|+.++|.+++.+..+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887643
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1e-12 Score=123.31 Aligned_cols=204 Identities=11% Similarity=0.071 Sum_probs=165.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHHcCCHHHHHHH
Q 047067 207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL---LKRDVVSWNSMLTGCAQHGLGKATVRW 283 (566)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 283 (566)
..|+++.|...+.+.+...-.-....|| +.-.+-..|++++|++.|-++ ...++...-.+...|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4578888888888887765333334444 344577789999999999876 356777777888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 047067 284 FEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT 362 (566)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 362 (566)
+.+.... ++.|+..+.-|...|-+.|+-.+|.+.+-.-- +-++.+.++..-|..-|....-+++|..+|++. -++|+
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 8877663 44467788889999999999999999883322 235678888888888899999999999999998 67899
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 047067 363 AAVWGALLGA-CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL 413 (566)
Q Consensus 363 ~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 413 (566)
..-|..++.. +++.|+++.|..+++......|.+......|..++...|..
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999988866 46789999999999999999999999999999999888754
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=2.1e-11 Score=124.27 Aligned_cols=328 Identities=13% Similarity=0.148 Sum_probs=237.5
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCChHHHHHHHHHHHhCCChhHHHH
Q 047067 105 AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL---ESKNEVSWNALIAGHARKSEGEKALR 181 (566)
Q Consensus 105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 181 (566)
..|+.+ .|..++..+++.. +.....|..|...|-..|+++++...+--. ...|...|..+..-..+.|.+++|.-
T Consensus 151 arg~~e-eA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLE-EAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHH-HHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 337777 8888888888764 455677888888888888888887766443 34567788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHH----HHHHHHhcCCHHHHHHHHHhcC
Q 047067 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNT----LVDMYAKSGSIEDAEKVFNRLL 257 (566)
Q Consensus 182 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~ 257 (566)
.|.+..+.. +++...+.--...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888764 44555555666777888888888888888887754333333332 3455666677788888877764
Q ss_pred C-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHHHHHHH
Q 047067 258 K-----RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP---------------------------NQVTFLCVLTA 305 (566)
Q Consensus 258 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~t~~~ll~a 305 (566)
. -+...+|.++..|.+..+++.|......+......| +... ..+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 3 144577888888888888888888888777621222 2111 112223
Q ss_pred HHccCCHHHHHHHHHhHHhhC--CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHH
Q 047067 306 CSHAGLLDEGQGYFALMKKHG--VEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVE 380 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~ 380 (566)
..+....+....+.....+.. ..-+...|.-+.++|...|++.+|..+|..+ +..-+...|--+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 334444444444444444445 3345678889999999999999999999998 22235679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 047067 381 LGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSW 436 (566)
Q Consensus 381 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 436 (566)
+|.+.+++++.+.|++..+-..|+..|.+.|+.++|.+++..+..-+-...+++.|
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999887333222345555
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=1.3e-11 Score=123.79 Aligned_cols=275 Identities=11% Similarity=0.068 Sum_probs=210.5
Q ss_pred cCCHHHHHHHHHhCCCC--ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 047067 142 FDQMDDAWFLFTALESK--NEV-SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYS--SVFTALASTGSLEQGKW 216 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~ 216 (566)
.|+++.|++.+...++. ++. .|-....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999998876653 233 3433344558999999999999999774 56654433 33567788999999999
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCCHHHHHHHHH
Q 047067 217 VHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV-----------VSWNSMLTGCAQHGLGKATVRWFE 285 (566)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 285 (566)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998887 66678888999999999999999999998864321 234444444445556667777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-H
Q 047067 286 KMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-A 363 (566)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~ 363 (566)
.+.+. .+.+......+..++...|+.++|..++....+. +|+.... ++......++.+++.+.+++. ...|+ .
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 76543 3457778888999999999999999999666553 4444322 233334559999999999887 44664 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.....+...|...+++++|.+.|+++++..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888899999999999999999999999875 678999999999999999999987754
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=9.9e-11 Score=109.60 Aligned_cols=351 Identities=13% Similarity=0.136 Sum_probs=252.0
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHH
Q 047067 23 FKNDIAMQNTILNAYAKCGCLDEARKLFDEMP----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSS 98 (566)
Q Consensus 23 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 98 (566)
.+-.+.++..||...+|--..+.|.+++.+-. +-+..++|.+|.+-.-.. ..++..+|....+.||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 35578899999999999999999999999876 337788999997654332 2789999999999999999999
Q ss_pred HHHHHccCCCch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhCCC------------CChHH
Q 047067 99 VLKASGAGATDD---KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDD-AWFLFTALES------------KNEVS 162 (566)
Q Consensus 99 ll~a~~~~~~~~---~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~f~~~~~------------~~~~~ 162 (566)
+|+..++.|++. +.+.++...|.+.|+.|...+|..+|..+.+.++..+ |..+...+.. .|..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 999999999766 3566888999999999999999999999999988754 4444433321 25556
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHH
Q 047067 163 WNALIAGHARKSEGEKALRTFSEMLREG----FEPTH---FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNT 235 (566)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~pd~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (566)
+..-++.|.+..+.+-|.++-.-..... +.|+. +-|..+..+.++....+.-...|+.|+-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7777788888888888887755443221 33432 3466777788888899999999999988877888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCH
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV---TFLCVLTACSHAGLL 312 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~ 312 (566)
++.+..-.|.++-..+++..+..-+ ..-+.+--.+++..|......|+.. -+.....-|. -++
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~ 504 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADI 504 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHH
Confidence 8888888888887777776553221 1112233344555555544445433 3333333332 233
Q ss_pred HHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047067 313 DEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPTAAVWGALLGACRMHKNVELGAY 384 (566)
Q Consensus 313 ~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~ 384 (566)
.++.+.- ..+.+..+ .....++..-.+.|.|..++|.+++.-. +..|......-++.+..+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 4444333 44444444 4456778888899999999999988654 445555556677778888888889998
Q ss_pred HHHHHHhcC
Q 047067 385 AAERIFELD 393 (566)
Q Consensus 385 ~~~~~~~~~ 393 (566)
+++-+.+.+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 888887654
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1e-10 Score=120.20 Aligned_cols=424 Identities=16% Similarity=0.148 Sum_probs=299.1
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC------CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP------VKDMVTWTALISGYSQNDQPENAIILF 81 (566)
Q Consensus 8 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~ 81 (566)
++.|-+-|..+++.. ++|+...--=.......|++..|+.+|.... .+|+. -.+-..+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 477888888888765 3333222111223334689999999999843 23332 12335677899999999999
Q ss_pred HHHHHCCCCCChhHHHHHHHHHc-cCCCch--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 047067 82 SQMLRLGLKPNQFTLSSVLKASG-AGATDD--KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK 158 (566)
Q Consensus 82 ~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 158 (566)
.+.++. .|+.+.-...|..+. ...+.+ ..+...+....+. -..++.+.+.|.+.|.-.|++..++.+...+...
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 998874 453332222222111 112222 1333333333332 2457788899999999999999999988877654
Q ss_pred C------hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067 159 N------EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH--FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA 230 (566)
Q Consensus 159 ~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 230 (566)
+ ..+|-.+..+|...|++++|...|.+..+. .||. ..+..+...+...|+++.+...|+.+.+.. +.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 2 336888999999999999999999887764 4554 344567788999999999999999998875 6667
Q ss_pred hHHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCHHHH
Q 047067 231 FVGNTLVDMYAKSG----SIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKML----RNGIAPNQVTF 299 (566)
Q Consensus 231 ~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~ 299 (566)
.+...|...|+..+ ..+.|..+..+...+ |...|-.+...+-+.. ...++..|.... ..+-.+.....
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 77778888888775 567777777776544 5667777766665544 445577776544 45556778889
Q ss_pred HHHHHHHHccCCHHHHHHHHHhHHhh---CCCccH------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHH
Q 047067 300 LCVLTACSHAGLLDEGQGYFALMKKH---GVEPEE------AHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAA-VWGA 368 (566)
Q Consensus 300 ~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ 368 (566)
+.+.......|+++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+ ...|.-+ .|-.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylR 535 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLR 535 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHH
Confidence 99999999999999999999554433 122333 22334667777888999999999988 4456553 4545
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCC
Q 047067 369 LLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKN 441 (566)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 441 (566)
++-.....++..+|...++.+++.+..+|.++..+++.|.+...|.-|.+-|....++-...+..+|.+.+++
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 5434455688999999999999999999999999999999999999999988888776555545566555544
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=5.7e-10 Score=105.93 Aligned_cols=391 Identities=12% Similarity=0.130 Sum_probs=294.5
Q ss_pred HhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHHHHHHHHccCCCchHHH
Q 047067 38 AKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLSSVLKASGAGATDDKFG 113 (566)
Q Consensus 38 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~ 113 (566)
-.++++..|+.+|+... .++...|---+..=.++.++..|..++++.... -|-+. .|---+-.=-..|+.. .+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~-ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIA-GA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccH-HH
Confidence 34567778999999865 567778888888888999999999999988764 44432 2222222233457888 89
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC-C
Q 047067 114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL--ESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE-G 190 (566)
Q Consensus 114 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 190 (566)
+++|..-.+ ..|+...|++.|+.=.+-+.++.|+.++++. ..|++.+|--....-.++|....|..+|....+. |
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 999988766 4799999999999999999999999999985 4689999999999999999999999999887663 1
Q ss_pred -CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHHH--------HhcCCC
Q 047067 191 -FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLV--AFVGNTLVDMYAKSGSIEDAEKVF--------NRLLKR 259 (566)
Q Consensus 191 -~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~~ 259 (566)
-.-+...|++....-.....++.|.-+|..++..= +.+ ..+|..+...=-+-|+......+. +.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 01122334444444456677899999999988763 333 456666666655667655444332 223222
Q ss_pred ---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHhHHhhC
Q 047067 260 ---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ-------VTFLCVLTAC---SHAGLLDEGQGYFALMKKHG 326 (566)
Q Consensus 260 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~ 326 (566)
|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=-+| ....+++.+.++++...+ -
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-l 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-L 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-h
Confidence 5678888888888889999999999999886 56532 1222222222 347889999999977776 3
Q ss_pred CCccHHHHHHHHHHhh----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067 327 VEPEEAHYVTFVDLLG----RAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI 401 (566)
Q Consensus 327 ~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 401 (566)
++....++.-+--+|+ ++.++..|.+++... |..|...++...|..-.+.++++....++++.++..|.+..++.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 4555666666655554 789999999999877 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 047067 402 LLANIYASAGRLNDAARARKMMKESGVKKEPACSW 436 (566)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 436 (566)
..+..-...|+++.|+.+|+...++...--|..-|
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999999998876544454445
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=1.6e-09 Score=106.88 Aligned_cols=396 Identities=10% Similarity=0.072 Sum_probs=298.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067 6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFS 82 (566)
Q Consensus 6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 82 (566)
.+.+.|+.++.+.++. .+.+...| -+|++...++.|.+++.+.. +.+...|-+-...=-++|+.+...++..
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445567667766664 23334444 44556677888888877654 5678888877777778888888877765
Q ss_pred H----HHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047067 83 Q----MLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWN--VYVGSSLLDMYARFDQMDDAWFLFTALE 156 (566)
Q Consensus 83 ~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~ 156 (566)
+ +...|+..+...|..=..+|-..|..- ..+.|..-++..|++.. ..+|+.-...+.+.+.++.|+.+|....
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~-TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVI-TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChh-hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 5 456788899999988888898888888 88888888888887543 5578888888999999999999998876
Q ss_pred C---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHH
Q 047067 157 S---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG 233 (566)
Q Consensus 157 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (566)
+ .+...|...+..--..|..++-..+|++.... ++-....+....+-.-..|+...|+.++.++.+.. +.+..++
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiw 621 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIW 621 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHH
Confidence 5 36678888887777888899999999998875 33344445445555667799999999999998876 4477888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAG 310 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 310 (566)
-+-+..-....+++.|+.+|.+.. .++...|.--+..---.+..++|++++++.++. -|+ ...|..+.+.+-+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 888999999999999999998874 456677777666666778899999999988883 566 456777778888899
Q ss_pred CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067 311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP-IEP-TAAVWGALLGACRMHKNVELGAYAAER 388 (566)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (566)
+++.|...|..-.+ .++..+..|-.|.+.=-+.|.+-.|..++++.. -.| +...|-..+..-.+.|+.+.|..+..+
T Consensus 700 ~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988843222 234456678888888888999999999999882 134 668999999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCC
Q 047067 389 IFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 389 ~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
+++--|++...+.--+.+..+.++
T Consensus 779 ALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHhCCccchhHHHHHHhccCccc
Confidence 887666655444443333333333
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=6.3e-12 Score=124.23 Aligned_cols=276 Identities=16% Similarity=0.067 Sum_probs=212.8
Q ss_pred CHHHHHHHHHhCCCC--ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047067 144 QMDDAWFLFTALESK--NEV-SWNALIAGHARKSEGEKALRTFSEMLREG--FEPTHFSYSSVFTALASTGSLEQGKWVH 218 (566)
Q Consensus 144 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 218 (566)
+..+|...|..+++. |+- ....+..+|...+++++|.++|+...+.. ..-+...|.+++-.+-+ +.+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 457888899886653 433 34567788999999999999999997743 11255677776654422 1222233
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067 219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN 295 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (566)
.+-+-.--+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223667889999999999999999999999998654 457888888888999999999999999877 3443
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 047067 296 -QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA 372 (566)
Q Consensus 296 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 372 (566)
...|..+...|.+.++++.|.-.|+++.+.+ +.+.....++...+.+.|+.++|+++++++ .++| |+..----...
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 4577888899999999999999998776644 234555667778899999999999999998 4444 44433344555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+...+++++|++.++++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 677899999999999999999999999999999999999999999988888764
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=1.6e-09 Score=106.77 Aligned_cols=428 Identities=12% Similarity=0.071 Sum_probs=236.1
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--------CCCcchHHHHHHHHHhCCC
Q 047067 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--------VKDMVTWTALISGYSQNDQ 73 (566)
Q Consensus 2 c~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~ 73 (566)
++++..++.|+.++....+. ++.++..|..-...=-..|+.+...++.++-. .-|...|-.=...+-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34555677788888877664 67778888766666667788888887776532 1233445444455555555
Q ss_pred ccHHHHHHHHHHHCCCCCC--hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 047067 74 PENAIILFSQMLRLGLKPN--QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFL 151 (566)
Q Consensus 74 ~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 151 (566)
.-.+..+....+..|+.-. ..||...-..|.+.+.++ .++.++...++. ++.+..+|......=-..|..++-..+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~-carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE-CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH-HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 5555555555555554322 335555555566666665 666666655543 233444444444444444444444444
Q ss_pred HHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--------------------------------CCCCHH
Q 047067 152 FTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREG--------------------------------FEPTHF 196 (566)
Q Consensus 152 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------------------~~pd~~ 196 (566)
|++... +..+.|-....-+-..|+...|..++....+.. ..|+..
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 444332 233344444444444444444444444444432 234444
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 047067 197 SYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQ 273 (566)
Q Consensus 197 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 273 (566)
.|..-++.---+++.++|.+++++.++.- +.-...|-.+...+-+.++++.|.+.|..-.+ ..+..|-.|...=-+
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 44333333334444455555554444432 22333444444445555555555554443321 123344444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH
Q 047067 274 HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF 353 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 353 (566)
.|+.-.|..++++.+..+.+ |...|...|..-.+.|+.++|........+ .++.+...|..-|.+..+-++-..+.+.
T Consensus 732 ~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred hcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHHHHhccCcccchHHHHH
Confidence 45555555555555444322 444555555555555555555555533222 1233444455555555555554444444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 047067 354 IREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPA 433 (566)
Q Consensus 354 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 433 (566)
+++.. .|+.+.-++...+-...+++.|.+-|.++++.+|++..++..+...+...|.-++-.+++.+.... .|.-|
T Consensus 810 Lkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG 885 (913)
T KOG0495|consen 810 LKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHG 885 (913)
T ss_pred HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCC
Confidence 44442 234444445555666778999999999999999999999999999999999999999999888764 35567
Q ss_pred eeEEEe
Q 047067 434 CSWVET 439 (566)
Q Consensus 434 ~s~~~~ 439 (566)
..|..+
T Consensus 886 ~~W~av 891 (913)
T KOG0495|consen 886 ELWQAV 891 (913)
T ss_pred cHHHHH
Confidence 777644
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=1.2e-09 Score=111.87 Aligned_cols=344 Identities=13% Similarity=0.115 Sum_probs=259.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC---CCCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067 6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM---PVKDMVTWTALISGYSQNDQPENAIILFS 82 (566)
Q Consensus 6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 82 (566)
|+++.|..|+..+++.. +.+...|-.|...|-..|+.+++...+-.. .+.|...|-.+..-..+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 89999999999999986 667888999999999999999999877543 46677889999999999999999999999
Q ss_pred HHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHHHHHHHHHhCCC-
Q 047067 83 QMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSS----LLDMYARFDQMDDAWFLFTALES- 157 (566)
Q Consensus 83 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~- 157 (566)
+.++.. +++...+--=...|-+.|+.. .+..-+..+.+...+.|..-... .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~-~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLK-RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHH-HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 998863 444444445556677888888 77777777777654333333333 34556667777889998887665
Q ss_pred -C---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHHhc
Q 047067 158 -K---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSY--------------------------SSVFTALAS 207 (566)
Q Consensus 158 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~--------------------------~~ll~~~~~ 207 (566)
. +...+|.++..|.+...++.|......+......+|..-+ .-+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2 4457889999999999999999998888762222222111 112233445
Q ss_pred cCChHHHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCCHHHHH
Q 047067 208 TGSLEQGKWVHAHVIKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK----RDVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 281 (566)
....+....+.....+.. +..+...|.-+.++|...|++.+|..+|..+.. .+...|--+..+|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 556666666666666666 455667888899999999999999999999853 36789999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHH--------hhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067 282 RWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMK--------KHGVEPEEAHYVTFVDLLGRAGLLDRALK 352 (566)
Q Consensus 282 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (566)
+.|++.+. ..|+ ...-.+|-..+.+.|+.++|.+.+..+. ..+..|+........+.|.+.|+.++=..
T Consensus 470 e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999998 4555 3455566677889999999999996533 23355666666677888999999887544
Q ss_pred HH
Q 047067 353 FI 354 (566)
Q Consensus 353 ~~ 354 (566)
..
T Consensus 548 t~ 549 (895)
T KOG2076|consen 548 TA 549 (895)
T ss_pred HH
Confidence 43
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=7.1e-11 Score=118.44 Aligned_cols=220 Identities=13% Similarity=-0.004 Sum_probs=141.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH-------hHHHHHHHHH
Q 047067 168 AGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA-------FVGNTLVDMY 240 (566)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~ 240 (566)
..+...|++++|...++++.+.. +-+...+..+...+.+.|+++.+..++..+.+.+..++. ..+..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554432 122334444444555555555555555555544332111 1223334444
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047067 241 AKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQG 317 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 317 (566)
.+..+.+...++++.++. .++.....+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence 444556666667766643 46777888888888889999999988888773 444421 12333345588888888
Q ss_pred HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067 318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 393 (566)
..+...+.. +-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|...+++.+.+-
T Consensus 316 ~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 885555432 345666778888999999999999999888 667888888888888999999999999999887753
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=9.1e-12 Score=123.14 Aligned_cols=245 Identities=14% Similarity=0.099 Sum_probs=188.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHHHHHH
Q 047067 174 SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGG--QLVAFVGNTLVDMYAKSGSIEDAEK 251 (566)
Q Consensus 174 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 251 (566)
-+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+... ..+..+|++.+.-+-+.-.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888885443 333446666788899999999999999999877642 3456677776654433222211111
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067 252 VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE 330 (566)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~ 330 (566)
-+-.+....+.+|-++..+|.-.++.+.|++.|++..+ +.| ...+|+.+..=+.....+|.|...|+... ..|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~ 485 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVD 485 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCC
Confidence 11122344678999999999999999999999999988 566 57888888888888889999999996544 345
Q ss_pred HHHHHH---HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 331 EAHYVT---FVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 331 ~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
..+|++ |...|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|++++++++.++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 566665 456788999999999999988 7778 45666777778889999999999999999999999988889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047067 406 IYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 406 ~~~~~g~~~~a~~~~~~m~~ 425 (566)
++...+++++|.+.++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999987
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.9e-10 Score=104.47 Aligned_cols=252 Identities=13% Similarity=0.115 Sum_probs=178.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHH
Q 047067 170 HARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGG--QLVAFVGNTLVDMYAKSGSIE 247 (566)
Q Consensus 170 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 247 (566)
+....+.+++++-.......|++.+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++-.--.+.++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 333344555555555555555443333333333344455566666666666665532 123444444442222211111
Q ss_pred H-HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhh
Q 047067 248 D-AEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKH 325 (566)
Q Consensus 248 ~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 325 (566)
- |..++ .+.+=.+.|...+..-|+-.++.++|+..|++.++. .|. ...|+.+..-|....+...|.+-++...+-
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 1 11111 112223445555666677889999999999999984 454 567778888899999999999999877765
Q ss_pred CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067 326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILL 403 (566)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 403 (566)
. +.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.+++..+..+..++..|
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 4 457788999999999999999999999998 6677 778999999999999999999999999999888788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 047067 404 ANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
++.|-+.++.++|.+.+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999998876
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.7e-10 Score=106.30 Aligned_cols=372 Identities=12% Similarity=0.112 Sum_probs=232.4
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHH--HHH
Q 047067 23 FKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLS--SVL 100 (566)
Q Consensus 23 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll 100 (566)
..-|.+.+-...-.+-+.|....|+..|......-+..|.+-+....-.-+.+.+ ..... |...|..-+. .+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHH
Confidence 3455555544455566778888888888776655555555444332222222221 11111 2222211111 123
Q ss_pred HHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCC
Q 047067 101 KASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKS 174 (566)
Q Consensus 101 ~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g 174 (566)
.++-.....+ .+.+=.......|++.+...-+-...++-...+++.|+.+|+++.+. |..+|+..+- .++.
T Consensus 235 ~a~~el~q~~-e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHE-EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3444444344 55555555666777777777777777777788888888888888763 5567766653 3333
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN 254 (566)
Q Consensus 175 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (566)
+..- ..+.+-...=-+--+.|...+.+-|+-.++.+.|...|+..++.+ +....+|+.+..-|....+...|++.++
T Consensus 312 ~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2222 222111111012233567777778888888888888888888876 5566778888888888888888888888
Q ss_pred hcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067 255 RLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE 330 (566)
Q Consensus 255 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~ 330 (566)
... .+|-..|-.|.++|.-.+.+.-|+-.|++... ++| |...|.+|..+|.+.+++++|+..|......| +.+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 764 34667888888888888888888888888887 455 56788888888888888888888886655544 335
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPTAA-VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI 401 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 401 (566)
...+..|.++|-+.++.++|...|++- + +.|... +.--|..-+.+.+++++|.....+....++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~------- 538 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET------- 538 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-------
Confidence 567778888888888888887777654 2 223221 222244456677777777655555444322
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047067 402 LLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
..++|..++++.+.
T Consensus 539 ----------e~eeak~LlReir~ 552 (559)
T KOG1155|consen 539 ----------ECEEAKALLREIRK 552 (559)
T ss_pred ----------hHHHHHHHHHHHHH
Confidence 33577777776654
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=2.7e-09 Score=101.45 Aligned_cols=390 Identities=13% Similarity=0.069 Sum_probs=186.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067 6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFS 82 (566)
Q Consensus 6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 82 (566)
+++..|+.||++.+... ..+..+|-..+.+=.++..+..|+.+|+... ++--..|---+..=-..|++..|.++|+
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45566777777776654 4556666666666667777777777766543 1111223333333334455666666665
Q ss_pred HHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----
Q 047067 83 QMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK---- 158 (566)
Q Consensus 83 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---- 158 (566)
+-.. ..|+...|.+.++.=.+....+ .++.|++..+-. .|++..|--....=.++|.+..|+.+|+...+.
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeie-raR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIE-RARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHH-HHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 5554 3566666666665555555555 555555554432 355555555555555556666665555554321
Q ss_pred --ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-------------------------------------------CCC
Q 047067 159 --NEVSWNALIAGHARKSEGEKALRTFSEMLREG-------------------------------------------FEP 193 (566)
Q Consensus 159 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------------------------------~~p 193 (566)
+...+++...--.++..++.|--+|+-.+..= -+-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 12223333333333444444444444333320 123
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHh------HHH---HHHHHHHhcCCHHHHHHHHHhcC---CCCh
Q 047067 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAF------VGN---TLVDMYAKSGSIEDAEKVFNRLL---KRDV 261 (566)
Q Consensus 194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~---~li~~~~~~g~~~~A~~~~~~~~---~~~~ 261 (566)
|-.||--.++.-...|+.+...++++.++..-.+.... +|- -.+-.=....+++.+.++|+... ....
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 33444444444444555555555555554432111110 110 00111112344555555554432 1122
Q ss_pred hHHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHH
Q 047067 262 VSWNSMLTG----CAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF 337 (566)
Q Consensus 262 ~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 337 (566)
.|+.-+--. -.++.+...|.+++-..+. .-|-..+|...|..-.+.+.++....+++.....+ +-+..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 222222222 2234445555555544433 34555555555555555555555555554444433 2234444444
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 338 VDLLGRAGLLDRALKFIREMPIEP----TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
...=...|+.+.|..+|+-.-.+| -...|.+.|.--...|.++.|..+++++++..+... ++...+.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 444455555555555555441122 123455555555555555556666665555554433 4444333
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.1e-10 Score=117.73 Aligned_cols=252 Identities=10% Similarity=-0.030 Sum_probs=149.1
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CC--hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067 137 DMYARFDQMDDAWFLFTALES--KN--EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE 212 (566)
Q Consensus 137 ~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 212 (566)
.++.+.|+.+.|.+.|.+..+ |+ ....-+....+.+.|+++.|.+.++.+.+.. +-+...+..+...+...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 344445555555555554322 11 1122223444555555666666665555543 123344455555555566666
Q ss_pred HHHHHHHHHHHhCCCCcHhHH-------HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 047067 213 QGKWVHAHVIKSGGQLVAFVG-------NTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVR 282 (566)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 282 (566)
.+.+++..+.+.+..+..... ..+++.-......+...+.++..+. .+...+..+...+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 666666555555432222111 1111111122223444455555543 377888888888899999999999
Q ss_pred HHHHHHHcCCCCCHHH--H-HHHHHHHHccCCHHHHHHHHHhHHhh-CCCccHHHHHHHHHHhhhcCCHHHHHHHHHh--
Q 047067 283 WFEKMLRNGIAPNQVT--F-LCVLTACSHAGLLDEGQGYFALMKKH-GVEPEEAHYVTFVDLLGRAGLLDRALKFIRE-- 356 (566)
Q Consensus 283 ~~~~m~~~g~~p~~~t--~-~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-- 356 (566)
++++..+. .||... + ..........++.+.+.+.++...+. .-.|+.....++...+.+.|++++|.+.|+.
T Consensus 285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 99988885 344332 1 11222223457778888888544433 2222225566888889999999999999993
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 357 M-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 357 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
. ...|+...+..+...+...|+.++|.+++++.++
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 5678888888888889999999999999998865
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=1.3e-12 Score=124.95 Aligned_cols=249 Identities=14% Similarity=0.106 Sum_probs=90.9
Q ss_pred HHHHHHHhcCChhHHHHHHcc-CC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccC
Q 047067 32 TILNAYAKCGCLDEARKLFDE-MP----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAG 106 (566)
Q Consensus 32 ~li~~~~~~g~~~~A~~~f~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 106 (566)
.+..++.+.|++++|.++++. .. ..|+.-|..+.......+++++|+..++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 446666677777777777743 21 224445555555555666677777777666653211
Q ss_pred CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CChHHHHHHHHHHHhCCChhHHHHHHH
Q 047067 107 ATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES--KNEVSWNALIAGHARKSEGEKALRTFS 184 (566)
Q Consensus 107 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 184 (566)
++..+..++.. ...+++++|.+++...-+ ++...+..++..+.+.++++++.++++
T Consensus 77 ---------------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 77 ---------------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ---------------------ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 22233344444 455666677666655432 355566677777777788888888777
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCC
Q 047067 185 EMLREG-FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL---LKRD 260 (566)
Q Consensus 185 ~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~ 260 (566)
...... .+++...|......+.+.|+.++|...++++++.. |.|..+.+.++.++...|+.+++.+++... ...|
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 766432 34455666667777777777788887777777765 345666777777777777777766666554 3446
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
...|..+..+|...|+.++|+.+|++..... +.|......+..++...|+.++|.++..
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 6677777788888888888888888877642 2356666777777777777777777663
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=7.1e-10 Score=111.84 Aligned_cols=282 Identities=11% Similarity=0.015 Sum_probs=199.9
Q ss_pred HHhcCCHHHHHHHHHhCCCC--C-hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHH
Q 047067 139 YARFDQMDDAWFLFTALESK--N-EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF--SYSSVFTALASTGSLEQ 213 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~ 213 (566)
-...|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.+.|.+..+. .|+.. .-..........|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 34579999999999887653 2 334455567788889999999999998764 34443 33334777788999999
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH----HHHHHHHHcCCHHHHHHHHHH
Q 047067 214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWN----SMLTGCAQHGLGKATVRWFEK 286 (566)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~ 286 (566)
|...++.+.+.. +.+..+...+..+|.+.|++++|.+.+..+.+. +...+. ....++...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999887 556678889999999999999999999988643 333232 111222333334444455555
Q ss_pred HHHcCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh--hhcCCHHHHHHHHHhC-CCC
Q 047067 287 MLRNGI---APNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL--GRAGLLDRALKFIREM-PIE 360 (566)
Q Consensus 287 m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~-~~~ 360 (566)
+.+... +.+...+..+...+...|+.++|...++...+...++....+. ++..+ ...++.+.+.+.+++. ...
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 555321 1377788888899999999999999996665543222211111 22222 3357788888888776 334
Q ss_pred CCH---HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 361 PTA---AVWGALLGACRMHKNVELGAYAAE--RIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 361 p~~---~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
|+. ....++...+.+.|++++|.+.++ ...+..|++. .+..++..+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433 566788888999999999999999 5777788765 567999999999999999999988644
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=7.5e-10 Score=105.62 Aligned_cols=215 Identities=18% Similarity=0.154 Sum_probs=174.3
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHH
Q 047067 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVR 282 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 282 (566)
.-.|+.-.+..-++.+++....++. .|--+..+|....+.++..+.|+... ..|+.+|..-.+.+.-.+++++|+.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4457888888899999887644333 36667778999999999999998874 3477888888888888899999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 047067 283 WFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE 360 (566)
Q Consensus 283 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 360 (566)
=|++.+. +.| +...|..+.-+..+.+.++++...|+...+ .++...++|+-....+...++++.|.+.|+.. .+.
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999988 455 466777777777889999999999976554 46777889999999999999999999999876 444
Q ss_pred CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 361 PT---------AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 361 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
|+ +.+-.+++.. .-.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44 2222222222 2348999999999999999999999999999999999999999999998754
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=7.2e-10 Score=112.78 Aligned_cols=400 Identities=13% Similarity=0.052 Sum_probs=243.3
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC----CcchHHHHHHHHHhCCCccHHHHHHHHHHHCC
Q 047067 13 IVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK----DMVTWTALISGYSQNDQPENAIILFSQMLRLG 88 (566)
Q Consensus 13 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 88 (566)
.++..+...|+.|+.++|.+||.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 88887633 3345666666666666665554
Q ss_pred CCCChhHHHHHHHHHccCCCchHHHHHHHHHHH-------HhCC-----------------CCchhHHHHHHHHHHhcCC
Q 047067 89 LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL-------KYGY-----------------DWNVYVGSSLLDMYARFDQ 144 (566)
Q Consensus 89 ~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~-------~~g~-----------------~~~~~~~~~li~~y~~~g~ 144 (566)
.|-..||..++.+|...||+. .-..+-+.+. ..|+ -||. ..++....-.|-
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli-~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~egl 154 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLI-LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGL 154 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchH-HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHH
Confidence 466667777777777776665 3222222111 1111 1111 112222233333
Q ss_pred HHHHHHHHHhCC---------------------------------C-CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047067 145 MDDAWFLFTALE---------------------------------S-KNEVSWNALIAGHARKSEGEKALRTFSEMLREG 190 (566)
Q Consensus 145 ~~~A~~~f~~~~---------------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 190 (566)
++.+.++...+| + ++..++.+.+..-..+|+.+.|..++.+|.+.|
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 444444433332 2 567788889998899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH-----------Hhc---
Q 047067 191 FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF-----------NRL--- 256 (566)
Q Consensus 191 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-----------~~~--- 256 (566)
++.+..-|..++-+ .++......+.+-|...|+.|+..++.-.+-...+.|....+.+.. ..|
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 99998888887765 7788888889999999999999988876665555544322221111 001
Q ss_pred -------------------C-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC-HHHHH-------
Q 047067 257 -------------------L-------KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG--IAPN-QVTFL------- 300 (566)
Q Consensus 257 -------------------~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~-~~t~~------- 300 (566)
+ .....+|...+.. ...|..++..++...|..-- ..|+ ...|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 0 0112233332222 12343333333333332100 0110 01111
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q 047067 301 -------------------------------------------------------------------------CVLTACS 307 (566)
Q Consensus 301 -------------------------------------------------------------------------~ll~a~~ 307 (566)
.++..|.
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 1111111
Q ss_pred ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHH
Q 047067 308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP-----IEPTAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a 382 (566)
..-+..++...-++....-+ ...|..||+.+....++++|..+.++.. +.-|..-+..+.+...+++....+
T Consensus 471 se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 11111112111111111111 1457788888888888999999888872 223455667778888888888888
Q ss_pred HHHHHHHHhc---CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 047067 383 AYAAERIFEL---DPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSW 436 (566)
Q Consensus 383 ~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 436 (566)
..+++++.+. .|.-..+..-+.+.-+..|+.+.-.++++-+...|+.- .+--|
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8888888763 24334556667777888999999999999999988865 34344
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.3e-09 Score=101.20 Aligned_cols=359 Identities=10% Similarity=0.082 Sum_probs=238.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCC------------Cc
Q 047067 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYD------------WN 128 (566)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~------------~~ 128 (566)
.|.+.-.|.+.|+++.|+.-|+...+. .||..+-..++-.+...++.+ ..++.|..++..... |+
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~e-kmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAE-KMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHH-HHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 444445577889999999999888774 688776555555555667777 778888888764322 22
Q ss_pred hhHHHHHH-----HHHHhcCC--HHHHH----HHHHhCCCCChH---HH----------H--------HHHHHHHhCCCh
Q 047067 129 VYVGSSLL-----DMYARFDQ--MDDAW----FLFTALESKNEV---SW----------N--------ALIAGHARKSEG 176 (566)
Q Consensus 129 ~~~~~~li-----~~y~~~g~--~~~A~----~~f~~~~~~~~~---~~----------~--------~li~~~~~~g~~ 176 (566)
....|--+ .-.-+.+. .+++. ++..-...+|-. -| . .-..-|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222211 11111111 11111 111111222210 01 0 112347899999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 177 EKALRTFSEMLREGFEPTHFSYS--SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN 254 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (566)
+.|+++++-..+..-+.-...-+ .++.......++-.|.++-+..+... .-+....+.-.+.-...|++++|.+.|+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99999998887654332222222 22333333446777777776665543 2233333333344556799999999999
Q ss_pred hcCCCChhHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH
Q 047067 255 RLLKRDVVSWNSML---TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE 331 (566)
Q Consensus 255 ~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~ 331 (566)
+....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++..... -++.|.
T Consensus 515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCH
Confidence 99888765544443 3477889999999999988653 344677888888999999999999999855432 356678
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS 409 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 409 (566)
.+...|.+.|-+.|+-..|.+..-+- ..-| +..+..-|...|....-.+.++..|+++--+.|+.......++.++.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 89999999999999999999986554 3333 455555566667777778999999999999999887666677788889
Q ss_pred cCChhHHHHHHHHHHh
Q 047067 410 AGRLNDAARARKMMKE 425 (566)
Q Consensus 410 ~g~~~~a~~~~~~m~~ 425 (566)
.|++..|..+++..-.
T Consensus 673 sgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHR 688 (840)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999998854
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.8e-09 Score=102.09 Aligned_cols=405 Identities=12% Similarity=0.046 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHcc--CCCCCcchHHHHHHHHHhCCCccHHHHHHH----H
Q 047067 10 EARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDE--MPVKDMVTWTALISGYSQNDQPENAIILFS----Q 83 (566)
Q Consensus 10 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~----~ 83 (566)
.|.-+-+.+...+ .|+...--+..+|.-.|+++.|..+... +...|..+.......+.+..++++|+.++. .
T Consensus 34 ~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~ 111 (611)
T KOG1173|consen 34 TALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVE 111 (611)
T ss_pred HHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 3333334444333 4555555577888878888888887764 557888888888999999999999999887 2
Q ss_pred HHHC-------C--CCCChhH----HHHHHH-------HHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 047067 84 MLRL-------G--LKPNQFT----LSSVLK-------ASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR-- 141 (566)
Q Consensus 84 m~~~-------g--~~p~~~t----~~~ll~-------a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~-- 141 (566)
+... + +.+|..- -+.-.+ .+....+.+ .++..+...+.. |+..+.++..+-..
T Consensus 112 ~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~-~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 112 TNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNRE-EARDKYKEALLA----DAKCFEAFEKLVSAHM 186 (611)
T ss_pred hcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHH-HHHHHHHHHHhc----chhhHHHHHHHHHHHh
Confidence 2110 0 1111111 111111 122233333 455554444433 22222221111110
Q ss_pred ------------------cC-CHHHHHHHHHhC----C----------------CCChHHHHHHHHHHHhCCChhHHHHH
Q 047067 142 ------------------FD-QMDDAWFLFTAL----E----------------SKNEVSWNALIAGHARKSEGEKALRT 182 (566)
Q Consensus 142 ------------------~g-~~~~A~~~f~~~----~----------------~~~~~~~~~li~~~~~~g~~~~A~~~ 182 (566)
++ +.+.-+.+|+-. . +.|+..--.-..-+...+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 01 111111222211 0 01333344445567788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 047067 183 FSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR--- 259 (566)
Q Consensus 183 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 259 (566)
++...+.. ++....+..-|.++...|+..+-..+=..+++.- |....+|-++.--|.-.|+..+|++.|.+...-
T Consensus 267 t~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~ 344 (611)
T KOG1173|consen 267 TEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT 344 (611)
T ss_pred hHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc
Confidence 99988763 5555566666667778888777666666676654 667788888998899999999999999987543
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
=...|-.+...|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|.++|...... .+.|+.+.+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhh
Confidence 3578999999999999999999998887663 1212233344555688899999999999554332 2345667777777
Q ss_pred HhhhcCCHHHHHHHHHhC--C---C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067 340 LLGRAGLLDRALKFIREM--P---I---EP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA 410 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~--~---~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 410 (566)
..-..+.+.+|..+|+.. + + .+ -..+|+.|..+|++.+.+++|+..+++.+.+.|.++.+|..++-+|...
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLL 502 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 777889999999999876 1 1 11 2356889999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHh
Q 047067 411 GRLNDAARARKMMKE 425 (566)
Q Consensus 411 g~~~~a~~~~~~m~~ 425 (566)
|+++.|...|.+...
T Consensus 503 gnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 503 GNLDKAIDHFHKALA 517 (611)
T ss_pred cChHHHHHHHHHHHh
Confidence 999999999998764
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=7.7e-10 Score=100.29 Aligned_cols=298 Identities=15% Similarity=0.168 Sum_probs=198.6
Q ss_pred CCHHHHHHHHHhCCCCChHHH---HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChHH
Q 047067 143 DQMDDAWFLFTALESKNEVSW---NALIAGHARKSEGEKALRTFSEMLREGFEPTH------FSYSSVFTALASTGSLEQ 213 (566)
Q Consensus 143 g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~t~~~ll~~~~~~~~~~~ 213 (566)
.+.++|.+.|-+|.+.|..++ -+|.+.|-+.|..+.|+++-+.+.+. ||. ...-.+..-|...|-+|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 567777777777776554443 45667777778888888777776653 332 123334455667777788
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--------hHHHHHHHHHHHcCCHHHHHHHHH
Q 047067 214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV--------VSWNSMLTGCAQHGLGKATVRWFE 285 (566)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~ 285 (566)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-.++.+-+. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888887777644 23344456677888888888888887776643322 234555566666788888888888
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH
Q 047067 286 KMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA 363 (566)
Q Consensus 286 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 363 (566)
+..+. .|+.+ .-..+.......|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++.++ ...+..
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 88874 34433 333455677788899999999988787776666677888888999999999988888776 334444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCChhHHHHHHHHHHhCCCccCCceeEEEeCC
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA--SAGRLNDAARARKMMKESGVKKEPACSWVETKN 441 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 441 (566)
..-..+-..-....-.+.|.....+-+...|+-...|..+---.. ..|++.+...++..|....++..|.+.....+-
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF 362 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGF 362 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCC
Confidence 444444444444555677777777777778876544433332232 346788888899999887777777665544444
Q ss_pred EEEEE
Q 047067 442 AVHMF 446 (566)
Q Consensus 442 ~~~~f 446 (566)
..|.|
T Consensus 363 ~a~~l 367 (389)
T COG2956 363 TAHTL 367 (389)
T ss_pred cceee
Confidence 44444
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=4e-10 Score=104.58 Aligned_cols=197 Identities=16% Similarity=0.104 Sum_probs=160.5
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (566)
.....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456667788888999999999999987642 356778888889999999999999999988853 335567778888
Q ss_pred HHHccCCHHHHHHHHHhHHhhCC-CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067 305 ACSHAGLLDEGQGYFALMKKHGV-EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL 381 (566)
Q Consensus 305 a~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 381 (566)
.+...|++++|...+........ ......+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 88999999999999966554322 223456777888999999999999999887 3344 45678888889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 382 GAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 382 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
|...++++++..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888899999999999999999888764
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.1e-12 Score=87.06 Aligned_cols=50 Identities=34% Similarity=0.629 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc
Q 047067 56 KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA 105 (566)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 105 (566)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=5e-11 Score=120.95 Aligned_cols=271 Identities=16% Similarity=0.162 Sum_probs=196.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 047067 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD 260 (566)
Q Consensus 181 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 260 (566)
.++-.|...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46678888999999999999999999999999999 9999998888999999999999999998887665 678
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-HHhhCCCccHHHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL-MKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~-~~~~~~~p~~~~~~~li~ 339 (566)
..+|..|..+|.++||... ++..++ -...+...++..|.-..-..++.. -...+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999876 333333 122344455666665555555532 23344556654 3566
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067 340 LLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRM-HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR 418 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 418 (566)
...-.|.++.+.+++..+|..........+++-+.. +..++.-....+...+ .| ++.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 677788999999999888643211111113444433 3344444444444444 44 45689999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccccHHHH
Q 047067 419 ARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQER 491 (566)
Q Consensus 419 ~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~ 491 (566)
+...|+++|+.-.+.+.|-.+.+ . +....++.+.+.|++.|+.|+..+....+.++-+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 99999999998888888865433 1 1124455778999999999998776554444333
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=5.6e-09 Score=97.68 Aligned_cols=292 Identities=14% Similarity=0.082 Sum_probs=180.3
Q ss_pred HHHHHHh--CCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 047067 64 LISGYSQ--NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR 141 (566)
Q Consensus 64 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~ 141 (566)
+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+ .+......+.+..-+++..+.-+.......
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~-~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDED-RANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 4444433 577888888877766655333 233445555566666766 666666666665445556666666666666
Q ss_pred cCCHHHHHHHHHhCC---CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047067 142 FDQMDDAWFLFTALE---SKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVH 218 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 218 (566)
.|+.+.|..-.+++. .+++..-.....+|.+.|++.+...++.+|.+.|+--|+..-
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-------------------- 225 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-------------------- 225 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--------------------
Confidence 677666666555533 345666666666777777777777777777666643332210
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067 219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN 295 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (566)
.....+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus 226 --------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 226 --------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred --------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 0011233444444443444444444555553 33566666777777888888888888888888777666
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALLGAC 373 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 373 (566)
...+-.+.+.++.+.-.+.. ......+-.| ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++
T Consensus 298 ----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 298 ----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred ----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 22223455666666666665 3334444344 56667777777777788777777766 6677777777777777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 047067 374 RMHKNVELGAYAAERIFE 391 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~ 391 (566)
.+.|+.++|.+..++.+-
T Consensus 372 ~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 372 DQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 777777777777777664
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=6.2e-09 Score=97.43 Aligned_cols=275 Identities=14% Similarity=0.130 Sum_probs=211.3
Q ss_pred cCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047067 142 FDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVH 218 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 218 (566)
.|++..|++...+-.+ .-+..|..-+.+-.+.|+.+.+-.++.+.-+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5899999999887544 2455666667778889999999999998877533455556666677788899999999999
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067 219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-----------VVSWNSMLTGCAQHGLGKATVRWFEKM 287 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (566)
.++.+.+ +-+..+......+|.+.|++.....+...+.+.. -.+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9988887 5566777888999999999999999999986552 247787877777666666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH----HHhCCCCCCH
Q 047067 288 LRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF----IREMPIEPTA 363 (566)
Q Consensus 288 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~p~~ 363 (566)
..+ .+-+...-.+++.-+.+.|+.++|.++.....+.+..|+... ++ ...+-++...=.+. +...|..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 544 455667777888888999999999999977777777776221 11 22344554443333 33434444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
..+.+|...|.+++.+.+|...++.++...|+. ..|..++.++.+.|+..+|.+++++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 778899999999999999999999999999976 5899999999999999999999988764
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=6.7e-09 Score=94.32 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=143.7
Q ss_pred CCCccHHHHHHHHHHHCCCCCChh-HHHHHHHHHccCCCchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHH
Q 047067 71 NDQPENAIILFSQMLRLGLKPNQF-TLSSVLKASGAGATDDKFGRQVHAFCLKYG-YDW--NVYVGSSLLDMYARFDQMD 146 (566)
Q Consensus 71 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~ 146 (566)
+.++++|.++|-+|.+. .|..+ +-.++-+.+.+.|..+ .|..+|+-+.++. +.. -......|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvD-RAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVD-RAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHH-HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45677777777777763 22221 2233334444555555 5555555555431 100 1122334555566666677
Q ss_pred HHHHHHHhCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067 147 DAWFLFTALESKN---EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK 223 (566)
Q Consensus 147 ~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 223 (566)
.|+.+|..+.+.+ ..+.-.|+..|-+..+|++|++.-+++.+.+-++..+-.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI------------------------- 179 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI------------------------- 179 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-------------------------
Confidence 7777776665532 234455666666667777777666666655433322110
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047067 224 SGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300 (566)
Q Consensus 224 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (566)
...|.-|...+.-..+++.|..++.+..+. .+.+--.+...+...|+++.|++.++...+.+..--..+..
T Consensus 180 ------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 180 ------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 112233333344444555555555554322 22233334455566666666666666666643222234555
Q ss_pred HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh---c
Q 047067 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI-REMPIEPTAAVWGALLGACRM---H 376 (566)
Q Consensus 301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~---~ 376 (566)
.|..+|.+.|+.+++..++..+.+.. +....-..+.+.-....-.+.|...+ +.+.-+|+...+..|+..-.. .
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 56666666666666666663333322 22222233333333333344444433 344556777777777765432 2
Q ss_pred CCHHHHHHHHHHHHh
Q 047067 377 KNVELGAYAAERIFE 391 (566)
Q Consensus 377 g~~~~a~~~~~~~~~ 391 (566)
|...+.+.+++.|+.
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 345555556666653
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=7.6e-12 Score=84.36 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067 259 RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308 (566)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 308 (566)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=1.6e-09 Score=113.64 Aligned_cols=258 Identities=12% Similarity=0.033 Sum_probs=186.7
Q ss_pred ChHHHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 047067 159 NEVSWNALIAGHAR-----KSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALA---------STGSLEQGKWVHAHVIK 223 (566)
Q Consensus 159 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 223 (566)
+..+|...+.+-.. .+..++|+++|++..+. .|+. ..|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55666666666322 23457899999999874 4554 34444444332 23457899999999998
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HH
Q 047067 224 SGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV-TF 299 (566)
Q Consensus 224 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 299 (566)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 86 55777888888999999999999999999743 3 5678888999999999999999999999984 45532 33
Q ss_pred HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 047067 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHK 377 (566)
Q Consensus 300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g 377 (566)
..++..+...|++++|...+........+-+...+..+...|...|+.++|...++++ +..|+. ..++.+...+...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 3444456668999999999966655432224555777888899999999999999988 445554 45556666677777
Q ss_pred CHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 378 NVELGAYAAERIFEL---DPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 378 ~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
+.|...++++++. .|.++. .+..+|+-.|+-+.+... +++.+.|
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4788878887764 344433 366778888888777766 7777654
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=3.3e-09 Score=106.25 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCc-HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C
Q 047067 195 HFSYSSVFTALASTGSLEQGKWVHAHVIKS-----GG-QLV-AFVGNTLVDMYAKSGSIEDAEKVFNRLLK--------R 259 (566)
Q Consensus 195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~ 259 (566)
..|...+...|...|+++.|..++++.++. |. .|. ....+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667888899999999999999888765 21 222 22334567789999999999999988731 1
Q ss_pred ---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHh-hC--
Q 047067 260 ---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN-----GI-APNQ-VTFLCVLTACSHAGLLDEGQGYFALMKK-HG-- 326 (566)
Q Consensus 260 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~-- 326 (566)
-..+++.|..+|.+.|++++|...+++..+- |. .|.. .-++.+...|...+.+++|..+++...+ ..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357788888999999999998888876541 22 2222 3466777788999999999999843322 21
Q ss_pred CCcc----HHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067 327 VEPE----EAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 327 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 392 (566)
+.++ ..+++.|...|...|++++|.++++++ ...+. ...++.|..+|.+.++.++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 458999999999999999999999877 12233 357788889999999999999999988753
Q ss_pred ----CCCC---CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 393 ----DPHD---SGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 393 ----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
+|+. ..+|..|+-.|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444 45788999999999999999999988863
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=9.4e-08 Score=96.63 Aligned_cols=409 Identities=15% Similarity=0.095 Sum_probs=257.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHH
Q 047067 22 AFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPV---KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLS 97 (566)
Q Consensus 22 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 97 (566)
.+..|+.+|..|.-....+|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+++.-....-.|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4667999999999999999999999999998653 345679999999999999999999998776543335443 344
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHHh--C--CCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhCCCC---C
Q 047067 98 SVLKASGAGATDDKFGRQVHAFCLKY--G--YDWNVYVGSSLLDMYARF-----------DQMDDAWFLFTALESK---N 159 (566)
Q Consensus 98 ~ll~a~~~~~~~~~~~~~i~~~~~~~--g--~~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~~---~ 159 (566)
..-+.|...-..-+.+...-..++.. + -......|..+.-+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44445554433322444444444431 1 112233444444445332 2234566666665432 3
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 239 (566)
...---+.--|+-.++.+.|++..++...-+-.-+...|..+.-.++..+++.+|..+.+.....- +.|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 322222334466778899999999988887656777888888888888888888888877765431 1111111111111
Q ss_pred HHhcCCHHHHHHHHHhcC------------------------------C-CCh-hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLL------------------------------K-RDV-VSWNSMLTGCAQHGLGKATVRWFEKM 287 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~------------------------------~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 287 (566)
-...++.++|......+. + .+. .++..+.. ..+ -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-c
Confidence 122344444433322210 0 011 12222111 111 11111110000 1
Q ss_pred HHcCCCC--C------HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 047067 288 LRNGIAP--N------QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P 358 (566)
Q Consensus 288 ~~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 358 (566)
...-+.| + ...|......+...+..++|...+.+.... .+.....|......+...|.+++|.+.|... .
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 2111222 2 123445556777888888888777444332 2334567777778889999999999999877 6
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 047067 359 IEPT-AAVWGALLGACRMHKNVELGAY--AAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACS 435 (566)
Q Consensus 359 ~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s 435 (566)
+.|+ +.+..++...+...|+...|.. ++..+++++|.++.+|..|+.++.+.|+.++|...|+...+..- ..|..+
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~p 791 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLP 791 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCccc
Confidence 7785 4688999999999999988888 99999999999999999999999999999999999999876432 334444
Q ss_pred E
Q 047067 436 W 436 (566)
Q Consensus 436 ~ 436 (566)
|
T Consensus 792 F 792 (799)
T KOG4162|consen 792 F 792 (799)
T ss_pred c
Confidence 4
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.4e-07 Score=85.33 Aligned_cols=366 Identities=11% Similarity=0.026 Sum_probs=191.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHH-HHHHhCCC-ccHHH--------------HHHHHHHHCCC-
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALI-SGYSQNDQ-PENAI--------------ILFSQMLRLGL- 89 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li-~~~~~~g~-~~~A~--------------~l~~~m~~~g~- 89 (566)
...-...+..|...++-++|...+.+.+++-...-+.|+ .-+-+.|. -.++. ..+.-..+.++
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 334445677788889999999999888865444444444 33333332 11221 11111222221
Q ss_pred --------------CCChhHHHHHHHHHcc--CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 90 --------------KPNQFTLSSVLKASGA--GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFT 153 (566)
Q Consensus 90 --------------~p~~~t~~~ll~a~~~--~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 153 (566)
.|+..+...-+.+++. .++....+..+.-.-...-++.++....++.+.|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 1222222222222221 111110222222222223355566667777777777777777777777
Q ss_pred hCCCCChHHHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067 154 ALESKNEVSWNAL---IAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA 230 (566)
Q Consensus 154 ~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 230 (566)
+...-|+.+-..| ...+.+.|+.+....+...+.... +-....|..-+...-..++++.|..+-++.++.. +.+.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence 6554433322222 223445666666666666554421 1122222222233334556666666666655543 2223
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH
Q 047067 231 FVGNTLVDMYAKSGSIEDAEKVFNRLL--K-RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL-TAC 306 (566)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~ 306 (566)
..+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|++.+|..+-+...+. +..+..+...+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 333333355566677777777776542 2 36677777777777777777777666654442 233444444442 222
Q ss_pred Hc-cCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047067 307 SH-AGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGA 383 (566)
Q Consensus 307 ~~-~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~ 383 (566)
.- ...-++|..+++.... +.|+ ....+.+...+...|..+++..++++. ...||....+.|...++..+.+++|.
T Consensus 414 ~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred ccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 22 2233556666544332 3344 233445556666777777777777665 44667777777777777777777777
Q ss_pred HHHHHHHhcCCCCC
Q 047067 384 YAAERIFELDPHDS 397 (566)
Q Consensus 384 ~~~~~~~~~~p~~~ 397 (566)
..|..++.++|++.
T Consensus 492 ~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 492 EYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHhcCccch
Confidence 77777777777664
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=8.3e-09 Score=95.69 Aligned_cols=189 Identities=12% Similarity=0.114 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (566)
.+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555444321 1123333344444444444444444444444432 222233334444444
Q ss_pred hcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067 242 KSGSIEDAEKVFNRLLK-----RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 316 (566)
..|++++|.+.|++... .....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444321 112233444444445555555555555544421 112233444444444444444444
Q ss_pred HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067 317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI 354 (566)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (566)
..++..... .+.+...+..+...+...|+.++|..+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444333322 1222233333334444444444444443
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.7e-08 Score=101.16 Aligned_cols=235 Identities=16% Similarity=0.139 Sum_probs=140.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCC---C
Q 047067 126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALESK----------NEV-SWNALIAGHARKSEGEKALRTFSEMLREG---F 191 (566)
Q Consensus 126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~ 191 (566)
+.-..+...|..+|...|+++.|..+|....+. .+. .-+.+...|...+++.+|..+|+++...- .
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445566888888888888888887764431 111 22334455666666666666666654310 0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC----------CCCh
Q 047067 192 EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL----------KRDV 261 (566)
Q Consensus 192 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~ 261 (566)
-++. +.-..+++.|..+|.+.|++++|...+++.. .+.+
T Consensus 276 G~~h-------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 276 GEDH-------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred CCCC-------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 0111 1112233334444555555555444444331 1111
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhHHhhC----C--
Q 047067 262 -VSWNSMLTGCAQHGLGKATVRWFEKMLRN---GIAPN----QVTFLCVLTACSHAGLLDEGQGYFALMKKHG----V-- 327 (566)
Q Consensus 262 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-- 327 (566)
...+.++..+...+++++|..++++..+. -+.++ ..+++.|...|.+.|++++|..+|+...... -
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 23455566667777777777777765441 12222 3467778888888888888888774333221 1
Q ss_pred Cc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 328 EP-EEAHYVTFVDLLGRAGLLDRALKFIREM--------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 328 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
.+ ....++.|...|.+.++..+|.++|.+. +-.|+. .+|..|...|...|+++.|+++.+.++.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11 2345677778888888888888877765 445666 6899999999999999999999998874
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.6e-08 Score=97.14 Aligned_cols=211 Identities=17% Similarity=0.090 Sum_probs=147.1
Q ss_pred CChHHHHHHHHHHHHhC-CC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHH
Q 047067 209 GSLEQGKWVHAHVIKSG-GQ--LVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVR 282 (566)
Q Consensus 209 ~~~~~a~~~~~~~~~~~-~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 282 (566)
+..+.+..-+.+++... .. .....+..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666532 12 224557778888999999999999998874 3367889999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CC
Q 047067 283 WFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PI 359 (566)
Q Consensus 283 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 359 (566)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. ..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999988 4554 567788888888899999999999666654 343322222223345678899999999665 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 360 EPTAAVWGALLGACRMHKNVELGAYAAERIF-------ELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 360 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
.|+...| .......|+...+ ..++.+. ++.|..+.+|..++.+|.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 1222334555443 2444443 4456666789999999999999999999999998754
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-07 Score=93.13 Aligned_cols=275 Identities=11% Similarity=0.040 Sum_probs=213.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047067 125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN---EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSV 201 (566)
Q Consensus 125 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 201 (566)
...++.+.....+-+...+++.+..++++.+.+.| ...+..-|..+...|+..+-+.+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 34566666777788888999999999999987754 456667788899999999888888888875 34567899999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCH
Q 047067 202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLG 277 (566)
Q Consensus 202 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 277 (566)
.--|...|+.++|++.+.+..... +.-...|-.....|+-.|.-++|...+.... ..... +--+..-|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-SLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHhccH
Confidence 998888999999999999887654 3345577888999999999999988876652 22211 22244567888999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh--CC----CccHHHHHHHHHHhhhcCCHHHH
Q 047067 278 KATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH--GV----EPEEAHYVTFVDLLGRAGLLDRA 350 (566)
Q Consensus 278 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~----~p~~~~~~~li~~~~~~g~~~~A 350 (566)
+.|.+.|.+... +-| |+...+-+.-...+.+.+.+|..+|+..... .+ .....+++.|..+|.+++.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999887 455 4666666666666788999999999444311 11 12455788999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 351 LKFIREM-PIE-PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 351 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
...+++. ... .|..++.++.-.+...|+++.|...|.+++.+.|++..+-..|.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999987 333 47789999999999999999999999999999999975555444
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=1.4e-08 Score=106.52 Aligned_cols=226 Identities=12% Similarity=-0.039 Sum_probs=169.3
Q ss_pred CHHHHHHHHHHHhc-----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-
Q 047067 194 THFSYSSVFTALAS-----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK---------SGSIEDAEKVFNRLLK- 258 (566)
Q Consensus 194 d~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~- 258 (566)
+...|...+.+-.. .+++++|...+++.++.. +.+...+..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34455555555321 234678999999998875 3345556666655542 3458899999998853
Q ss_pred --CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHH
Q 047067 259 --RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV 335 (566)
Q Consensus 259 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 335 (566)
.+..+|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+.... +...+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 36778888989999999999999999999985 454 567888888999999999999999777665432 222333
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067 336 TFVDLLGRAGLLDRALKFIREM--PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
.+...+...|++++|...+++. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 3445567789999999999887 22354 4557777788889999999999999998888888878888888888888
Q ss_pred hhHHHHHHHHHHh
Q 047067 413 LNDAARARKMMKE 425 (566)
Q Consensus 413 ~~~a~~~~~~m~~ 425 (566)
+.|...++.+.+
T Consensus 490 -~~a~~~l~~ll~ 501 (553)
T PRK12370 490 -ERALPTIREFLE 501 (553)
T ss_pred -HHHHHHHHHHHH
Confidence 488887777765
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.1e-09 Score=96.40 Aligned_cols=227 Identities=15% Similarity=0.106 Sum_probs=159.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 047067 164 NALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS 243 (566)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 243 (566)
+.|...|.+.|.+.+|.+.|+.-... .|-..||..+-++|.+..+++.|..++.+-++.- +.++....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67788899999999999888887775 5666778778888888888888888887776653 44555555566666667
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 244 GSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 244 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
++.++|.++|+...+ .|+.+...+..+|.-.++++.|+..|+++++.|+. +...|..+.-+|.-.+.++-+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777776643 24555555666666677777777777777777655 55666666666666666665555553
Q ss_pred hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
.....-- +|+ ..+|-.|.......||+..|.+.|+-.+..+|++..
T Consensus 383 RAlstat--------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 383 RALSTAT--------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHhhcc--------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 3322111 232 246666666667778888888888888888888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 399 PHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+++.|+-.-.+.|+.++|+.++....+.
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888888888888888888888877664
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=7.6e-09 Score=93.94 Aligned_cols=195 Identities=13% Similarity=0.086 Sum_probs=162.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL-CVLTA 305 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 305 (566)
|-.--+.+..+|.+.|.+.+|.+.|+.-. .+-+.+|-.|-..|.+..+++.|+.+|.+-++ ..|-.+||. ...+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 33334678899999999999999998874 56788999999999999999999999999888 466666664 45577
Q ss_pred HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047067 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a 382 (566)
+...++.++|.++++...+.. +.+++...++...|.-.++++-|+.+++++ + .-++..|+.+.-+|.-.++++.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhh
Confidence 788899999999997776654 456777888888999999999999999976 5 34778899999999999999999
Q ss_pred HHHHHHHHhcC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 383 AYAAERIFELD--PH-DSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 383 ~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
+.-|++++... |+ ...+|..|+.+....|++..|.+.|+.....+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999998753 33 34588899999999999999999999887543
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.6e-07 Score=90.17 Aligned_cols=218 Identities=10% Similarity=-0.002 Sum_probs=142.4
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067 174 SEGEKALRTFSEMLREG-FEPT--HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE 250 (566)
Q Consensus 174 g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 250 (566)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...|.+.++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 2222 2345566666777788888877777777765 456777888888888888888888
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC
Q 047067 251 KVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV 327 (566)
Q Consensus 251 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 327 (566)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|...... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 88888743 3 4677888888888899999999999998874 455432222222344567889999988443322 2
Q ss_pred CccHHHHHHHHHHhhhcCCHH--HHHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 328 EPEEAHYVTFVDLLGRAGLLD--RALKFIREM-P----IEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
.|+...+ .++..+ .|+.. ++.+.+.+. . +.| ....|..+...+...|+.++|+..|+++++.+|.+..
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3332222 233333 34443 333333321 1 112 2357889999999999999999999999999975543
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=1.1e-05 Score=80.44 Aligned_cols=413 Identities=11% Similarity=0.116 Sum_probs=226.0
Q ss_pred CcHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHH
Q 047067 7 KLKEARIVHAHILGSA-FKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQML 85 (566)
Q Consensus 7 ~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 85 (566)
++-.-+..|++.++.= +......|...+......|-++-+.+++++..+-++..-+--|..++..+++++|-+.+...+
T Consensus 117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 3334444455444431 111223444444444445555555555555544444445555555556666666655555544
Q ss_pred HCC------CCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047067 86 RLG------LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGY--DWN--VYVGSSLLDMYARFDQMDDAWFLFTAL 155 (566)
Q Consensus 86 ~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~ 155 (566)
... .+.+...|.-+-...++..+.. ....+-. +++.|+ -+| -..|++|.+-|.+.|.++.|..+|++.
T Consensus 197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~-~slnvda-iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKV-QSLNVDA-IIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred CchhhhhhcccchhhHHHHHHHHHHhCcchh-cccCHHH-HHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 221 1222233333333333322222 1111111 122222 122 346889999999999999999999885
Q ss_pred CCC--ChHHHHHHHHHHHhC----------------CC------hhHHHHHHHHHHHCCC-----------CCCHHHHHH
Q 047067 156 ESK--NEVSWNALIAGHARK----------------SE------GEKALRTFSEMLREGF-----------EPTHFSYSS 200 (566)
Q Consensus 156 ~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-----------~pd~~t~~~ 200 (566)
... .+.-++.+-.+|++- ++ ++-.+.-|+.+...+. +-+..+|..
T Consensus 275 i~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 275 IQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred HHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 542 222233333333321 11 1222333333332210 111122222
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhC-----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHH
Q 047067 201 VFTALASTGSLEQGKWVHAHVIKSG-----GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV-------VSWNSML 268 (566)
Q Consensus 201 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li 268 (566)
-.. ...|+..+-...+.++++.- .......|..+.+.|-..|+++.|+.+|++..+-+- .+|-.-.
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA 432 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 111 22345556666777776541 223345778899999999999999999999865432 3555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC----------C-CH------HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH
Q 047067 269 TGCAQHGLGKATVRWFEKMLRNGIA----------P-NQ------VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE 331 (566)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~ 331 (566)
..=.++.+++.|+.+.+......-. | .. ..|...+..-...|-++....+++.+.+..+....
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq 512 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ 512 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH
Confidence 6666788899999988877542111 1 11 12333344444567788888888777776654322
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-C-C-CCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCc--hHHH
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM-P-I-EPTA-AVWGALLGACRM---HKNVELGAYAAERIFELDPHDSG--PHIL 402 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~-~p~~-~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~--~~~~ 402 (566)
..- .....+-...-++++.+++++- + + -|++ .+|++.+.-+.. ...++.|..+|+++++.-|.... .|..
T Consensus 513 ii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 513 III-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL 591 (835)
T ss_pred HHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 222 2233455667789999999986 2 2 3565 589998877543 24689999999999998774322 2333
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 047067 403 LANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
.+..--+-|.-..|..++++..
T Consensus 592 YA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3333344577777888888754
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=5.6e-07 Score=86.46 Aligned_cols=342 Identities=13% Similarity=0.054 Sum_probs=209.6
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCc-hhHHHHHHHH
Q 047067 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWN-VYVGSSLLDM 138 (566)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~li~~ 138 (566)
+-....-|.++|.+++|++.|.+.++ +.|| ...|...-.+|...|++. ...+--...++ +.|+ +-.+..-..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~-~Vied~TkALE--l~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWE-KVIEDCTKALE--LNPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHH-HHHHHHHHHhh--cCcHHHHHHHHHHHH
Confidence 33445567788999999999999887 4788 555666666677778777 44433333333 3444 3345555667
Q ss_pred HHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH--------HH-CC--CCCCHHHHHHHHHHHhc
Q 047067 139 YARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEM--------LR-EG--FEPTHFSYSSVFTALAS 207 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~-~g--~~pd~~t~~~ll~~~~~ 207 (566)
+-..|++++|+. .+|-..+..+|....-.-.+.+++++. .. .+ +-|......+.+..+-.
T Consensus 193 ~E~lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 193 HEQLGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHhhccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 777788777753 223334444444333333333333321 22 12 33444444444433321
Q ss_pred cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHhc-------CCC---Ch------hHHHHHHHH
Q 047067 208 TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS-GSIEDAEKVFNRL-------LKR---DV------VSWNSMLTG 270 (566)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~---~~------~~~~~li~~ 270 (566)
.-.. .+...+-..|...-..+=..|... ..+..|...+.+- ... |. .+.+.-..-
T Consensus 264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 1000 000000001111111111111110 1122232222211 111 11 122222222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHH
Q 047067 271 CAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRA 350 (566)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (566)
+.-.|+.-.|.+-|+..+.....++.. |.-+...|....+.++.++.|.+..+.+ +-+..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445788999999999999864443332 7777778999999999999998877654 33566787788888889999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 351 LKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 351 ~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
..=|++. .+.|+ ...|-.+.-+.-+.+.+++++..|++..+.-|..+..|+..+.++...++++.|.+.++..++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999988 66774 4677777777667789999999999999999999999999999999999999999999999864
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=8.2e-06 Score=83.17 Aligned_cols=406 Identities=15% Similarity=0.130 Sum_probs=247.8
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcc--h-HHHHHHHHHhC-----CCcc
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMV--T-WTALISGYSQN-----DQPE 75 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~-~~~li~~~~~~-----g~~~ 75 (566)
..|+.+.|...+..-.+. +.....+.......|.+.|+.++|..++..+..+|+. . |..+..+.... .+.+
T Consensus 16 e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred HCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHH
Confidence 357777777776554332 2333555666778888888988998888888744333 3 34444444222 2456
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047067 76 NAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL 155 (566)
Q Consensus 76 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 155 (566)
...++|+++... -|.......+.-.+.....+...+........+.|+| .+++.|-..|......+-..+++...
T Consensus 95 ~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 95 KLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 667788877654 2444433333222333333333555555666666754 46677777777655555555555443
Q ss_pred C------------------CCChH--HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHH
Q 047067 156 E------------------SKNEV--SWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQG 214 (566)
Q Consensus 156 ~------------------~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a 214 (566)
. .|... +|.-+...|...|++++|+++.++.+.. .|+ ...|..-.+.+-+.|++.+|
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 1 12232 4466678899999999999999999886 455 56788888999999999999
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------hHH--HHHHHHHHHcCCHHHHHH
Q 047067 215 KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV----------VSW--NSMLTGCAQHGLGKATVR 282 (566)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~ 282 (566)
...++.+.+.. ..|..+-+-.+..+.++|++++|.+++.....++. ..| .....+|.+.|++..|+.
T Consensus 248 a~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 248 AEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999887 56788888889999999999999999988765541 134 345678999999999998
Q ss_pred HHHHHHHc--CC-------------CCCHHHHHHHHHHHHccCC-------HHHHHHHHHhHHhhCCCc-----------
Q 047067 283 WFEKMLRN--GI-------------APNQVTFLCVLTACSHAGL-------LDEGQGYFALMKKHGVEP----------- 329 (566)
Q Consensus 283 ~~~~m~~~--g~-------------~p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~p----------- 329 (566)
.|....+. .+ +.+..+|..++...-+... ...|.+++-.+.+.....
T Consensus 327 ~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~ 406 (517)
T PF12569_consen 327 RFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNEN 406 (517)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccccccc
Confidence 77766542 01 1223344444443222111 223444442222211100
Q ss_pred -cHHHHHHHHHHh---hhcCCHHHHHHHHH-----------hC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067 330 -EEAHYVTFVDLL---GRAGLLDRALKFIR-----------EM------PIEPTAAVWGALLGACRMHKNVELGAYAAER 388 (566)
Q Consensus 330 -~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (566)
+..--..+-.-. .+...-+++...-. .. +..||+.- ..|+ ....-+++|.++++-
T Consensus 407 ~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~p 482 (517)
T PF12569_consen 407 MSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKP 482 (517)
T ss_pred CChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHH
Confidence 000000000000 11111111111110 00 11222211 1111 233457889999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 389 IFELDPHDSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 389 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 483 L~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 483 LLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999988877654
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=6.9e-08 Score=83.97 Aligned_cols=162 Identities=16% Similarity=0.111 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG 342 (566)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (566)
.-.|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...... +-+..+.|...--+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445667788888888888888888884 444 5678888888888888888888886655433 234567788888889
Q ss_pred hcCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067 343 RAGLLDRALKFIREM---PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR 418 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 418 (566)
..|++++|...|++. |.-|. ..+|..+..+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999988 32332 36888998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 047067 419 ARKMMKESGV 428 (566)
Q Consensus 419 ~~~~m~~~g~ 428 (566)
.++....++.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9999887665
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.4e-08 Score=97.75 Aligned_cols=218 Identities=16% Similarity=0.157 Sum_probs=174.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHH
Q 047067 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 281 (566)
+.+.|++.+|.-.|+..++.. +.+...|.-|....+..++-..|+..+++..+ .|..+.-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888876 66788888899999999998889988888743 36677888888899999999999
Q ss_pred HHHHHHHHcCCC-----C---CHHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067 282 RWFEKMLRNGIA-----P---NQVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALK 352 (566)
Q Consensus 282 ~~~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (566)
..++.-+....+ + +..+-.. ..+.....+....++| +.....+..+|..++..|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653211 0 0000000 1222223344556666 777777766788889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 353 FIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 353 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.|+.. .++| |...||-|...++...+.++|+..|++++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99988 6778 5679999999999999999999999999999999999999999999999999999999877764
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.8e-05 Score=76.91 Aligned_cols=280 Identities=11% Similarity=0.075 Sum_probs=159.7
Q ss_pred HHHHhcCCHHHHHHHHHhC--------CCCC-----h-----HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 047067 137 DMYARFDQMDDAWFLFTAL--------ESKN-----E-----VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSY 198 (566)
Q Consensus 137 ~~y~~~g~~~~A~~~f~~~--------~~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 198 (566)
..+...|++.+|+++++.. .+.| . ..--.|...+...|+-++|.+++....... .+|....
T Consensus 183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~ 261 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSL 261 (652)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHH
Confidence 3456677777777777665 1111 1 112234445666777777777777777664 3444322
Q ss_pred HHHH---HHHhccCChHH--HHHHHHHH-----------HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-h
Q 047067 199 SSVF---TALASTGSLEQ--GKWVHAHV-----------IKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-V 261 (566)
Q Consensus 199 ~~ll---~~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 261 (566)
.... .+...-.++-. ....++.. +...-......-+.++.+|. +..+.+.++-...+... .
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~ 339 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPE 339 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCch
Confidence 2221 12222111111 11111110 00000111112234444443 44556666666665433 3
Q ss_pred hHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------hHHhhCCCccH
Q 047067 262 VSWNSMLTGCA--QHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA--------LMKKHGVEPEE 331 (566)
Q Consensus 262 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~p~~ 331 (566)
..+.+++.... +...+.+|.+++...-+....-..+.....+......|+++.|.+++. ...+.+..|.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~- 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG- 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-
Confidence 44455544432 223567778877777664222223455556667778999999999997 4445554554
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM--------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHIL 402 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 402 (566)
+..+++.+|.+.++-+.|..++.+. .-.+.. .+|.-+..--.++|+.++|..+++++++.+|++..+...
T Consensus 419 -~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 419 -TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred -HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 4556788888888877777766654 112222 344444455567899999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 047067 403 LANIYASAGRLNDAARARKM 422 (566)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~ 422 (566)
+..+|++. +.+.|..+-+.
T Consensus 498 lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHhc-CHHHHHHHhhc
Confidence 99999976 45566655443
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.2e-05 Score=75.94 Aligned_cols=260 Identities=13% Similarity=0.039 Sum_probs=177.6
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYS-SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 237 (566)
|+.....+...+...|+.++|+..|++.... .|+..+-- .-.-.+.+.|+++....+...+.... ..+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 6777888888888889999998888887653 34433211 11122345677777766666665432 11122222223
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 047067 238 DMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 313 (566)
.......+++.|+.+-++.++. ++..+-.-...+.+.|++++|.-.|+..+. +.| +...|..|+.+|.-.|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 3344556777888777776543 444554445667888999999999998887 454 5678999999999999999
Q ss_pred HHHHHH-HhHHhhCCCccHHHHHHHH-HHhh-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067 314 EGQGYF-ALMKKHGVEPEEAHYVTFV-DLLG-RAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAER 388 (566)
Q Consensus 314 ~a~~~~-~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (566)
+|.-.- ..+.. ++.+..+...+. ..+. .-.--++|.+++++. .++|+- ...+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 987766 33332 223444443331 2221 222346788888877 777875 4667777888999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 389 IFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 389 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
.+...|++ ..++.|++++...+.+.+|...|......
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99988887 48889999999999999999999887653
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=5.8e-06 Score=82.44 Aligned_cols=423 Identities=13% Similarity=0.093 Sum_probs=207.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILF 81 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 81 (566)
.++...+.+..+.+++ +++....+.....--+...|+-++|......-. .++.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3455666677777776 333334444333333445789999988887655 345678999988888899999999999
Q ss_pred HHHHHCCCCCChh-HHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---
Q 047067 82 SQMLRLGLKPNQF-TLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES--- 157 (566)
Q Consensus 82 ~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--- 157 (566)
...... .||.. .+.-+--.-++.++.+ ..........+. .+.....|..+..++.-.|+...|..+.++..+
T Consensus 99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~-~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 99 RNALKI--EKDNLQILRDLSLLQIQMRDYE-GYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 998874 45543 3322222222333333 111111111111 011223344444444444444444444443321
Q ss_pred --CChHHHHHHH------HHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 047067 158 --KNEVSWNALI------AGHARKSEGEKALRTFSEMLREGFEPTHFSY-SSVFTALASTGSLEQGKWVHAHVIKSGGQL 228 (566)
Q Consensus 158 --~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 228 (566)
++...+.-.. ......|..++|++-+..-... ..|...+ ..-...+.+.+++++|..++..++... +.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-ch
Confidence 1222221111 1223344444444443332211 1121111 122233344445555555554444432 12
Q ss_pred cHhHHHHHHHHHHhcCCHHHHH-HHHHhcCCC---ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAE-KVFNRLLKR---DVVSWNSMLTGCAQ-HGLGKATVRWFEKMLRNGIAPNQVTFLCVL 303 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (566)
+...|..+..++.+--+.-++. .+|....+. ....-. +--.... ..-.+..-.++..+.+.|++|- |..+.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R-lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR-LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh-ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhH
Confidence 2222222223332222222222 333322111 000000 0000011 1112223334455555565543 33333
Q ss_pred HHHHccCCHHHHHHHH----HhHHhhC----------CCccHHH--HHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-H
Q 047067 304 TACSHAGLLDEGQGYF----ALMKKHG----------VEPEEAH--YVTFVDLLGRAGLLDRALKFIREM-PIEPTAA-V 365 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~----~~~~~~~----------~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~ 365 (566)
+.+-.-...+--.++. ..+...| -+|.... +-.++..|-+.|+++.|..+++.. +-.|+.+ .
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 3332222222111111 1111111 1444443 345678888999999999999887 5466654 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-----cCCceeEEEe
Q 047067 366 WGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK-----KEPACSWVET 439 (566)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~s~~~~ 439 (566)
|..=...+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.. .+..|.|..+
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 5455567788899999999999999998777544445666667889999999998888776642 1235777544
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=3.1e-05 Score=77.22 Aligned_cols=173 Identities=17% Similarity=0.167 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCC-----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHH
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMP-----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLK 101 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 101 (566)
+..|-..+....++|++..-+..|+... ......|...|.-....|-++-++.+|++.++. .|.. -.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 3445555666667788888888887643 224456888888888888888999999988863 3443 555666
Q ss_pred HHccCCCchHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCHH---HHHHHHHhCCCC--C--hHHHHHHHH
Q 047067 102 ASGAGATDDKFGRQVHAFCLKY------GYDWNVYVGSSLLDMYARFDQMD---DAWFLFTALESK--N--EVSWNALIA 168 (566)
Q Consensus 102 a~~~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~ 168 (566)
-++..++++ .+.+.+..++.. ..+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|..
T Consensus 178 ~L~~~d~~~-eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLD-EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchH-HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 677788888 555555544422 12556667777777766654432 244556655543 3 347999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047067 169 GHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA 206 (566)
Q Consensus 169 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 206 (566)
-|.+.|.+++|-.+|++....- .+..-|+.+.++|+
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 9999999999999998877642 23334455555554
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.5e-07 Score=86.10 Aligned_cols=394 Identities=11% Similarity=0.037 Sum_probs=237.4
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--CC-CcchHHHHHHHHHhCCCccHHHHH
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--VK-DMVTWTALISGYSQNDQPENAIIL 80 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l 80 (566)
..|+++.|...|...+... ++|...|..-...|++.|++++|.+=-.+-. .| -...|+-...++.-.|++++|+.-
T Consensus 14 s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 5688999999999888876 4588888888899999999988887555443 22 345788888888888999999999
Q ss_pred HHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHHh
Q 047067 81 FSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLL-----DMYARFDQMDDAWFLFTA 154 (566)
Q Consensus 81 ~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li-----~~y~~~g~~~~A~~~f~~ 154 (566)
|.+=++. .|+ ...++.+..+.. .+. .+ ...-.++..+..|. +.+...-.+..-++.+..
T Consensus 93 y~~GL~~--d~~n~~L~~gl~~a~~--~~~--~~---------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 93 YSEGLEK--DPSNKQLKTGLAQAYL--EDY--AA---------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHhhc--CCchHHHHHhHHHhhh--HHH--Hh---------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9887764 344 444555555541 000 00 00011122222111 111111111111111111
Q ss_pred CCCCChHH---HHHHHHHHHhCCChhHH-HHHHHHHH-HCCCCC----------------------CHHHHHHHHHHHhc
Q 047067 155 LESKNEVS---WNALIAGHARKSEGEKA-LRTFSEML-REGFEP----------------------THFSYSSVFTALAS 207 (566)
Q Consensus 155 ~~~~~~~~---~~~li~~~~~~g~~~~A-~~~~~~m~-~~g~~p----------------------d~~t~~~ll~~~~~ 207 (566)
-+. ++-. ...++.+.......+.- +..-..+. ..+..| -..-...+.++.-+
T Consensus 158 ~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 158 NPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred CcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 111 0000 00011111100000000 00000000 000011 01124456677777
Q ss_pred cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------HHHHHHHHHHHcCCH
Q 047067 208 TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVV----------SWNSMLTGCAQHGLG 277 (566)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~ 277 (566)
..+++.+.+-+...+... .+..-++....+|...|.+.++...-+...+..-. +...+..+|.+.+++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 778888888888888776 56666777888888888888877766655433211 222344567778889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHH-HHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEA-HYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
+.|+..|.+.+.....|+..+ +....+++........ -+.|... -...=...+.+.|++.+|...|.+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999998777655554322 2233344444332222 1233321 111125567788999999999988
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 357 M-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 357 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
+ ...| |...|.....+|...|++..|+.-.+..++++|+....|..-+.++....+|+.|.+.|++..+..
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8 4456 567889999999999999999999999999999999999999999999999999999999887644
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.87 E-value=1.7e-06 Score=88.07 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhh--------------CCCccHH--HHHHHHHHhh
Q 047067 279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH--------------GVEPEEA--HYVTFVDLLG 342 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--------------~~~p~~~--~~~~li~~~~ 342 (566)
.+...+..+...|+++ +|+.|-..|......+-..+++...... .-+|+.. ++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3445566667777653 4555555555444444444444222111 1134443 3355678888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 047067 343 RAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 420 (566)
..|++++|++++++. ...|+ +..|..-...+...|++++|.+.++.+.++++.|.....-.+..+.++|+.++|.++.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999977 55676 4577777888999999999999999999999999888888888889999999999999
Q ss_pred HHHHhCCCccCC-----ceeEEEe
Q 047067 421 KMMKESGVKKEP-----ACSWVET 439 (566)
Q Consensus 421 ~~m~~~g~~~~~-----~~s~~~~ 439 (566)
......+..+.. .|.|.++
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHH
Confidence 988776653332 4567544
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.5e-06 Score=78.73 Aligned_cols=403 Identities=12% Similarity=0.030 Sum_probs=231.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067 6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFS 82 (566)
Q Consensus 6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 82 (566)
+|+..|..+.+.-...+-+....+--=+...|...|++++|..++..+. .++...|-.|.-.+.-.|.+.+|..+-.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 4555566555554433211111111113445566788888888777554 3345556666666666677777766644
Q ss_pred HHHHCCCCCChhHHH-HHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--C
Q 047067 83 QMLRLGLKPNQFTLS-SVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK--N 159 (566)
Q Consensus 83 ~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~ 159 (566)
.. |+..... .++....+.++-. ....+|+.+... ..-.-+|.++....-.+++|.+++.++... +
T Consensus 116 ka------~k~pL~~RLlfhlahklndEk-~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 116 KA------PKTPLCIRLLFHLAHKLNDEK-RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred hC------CCChHHHHHHHHHHHHhCcHH-HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 32 3333333 3333344555554 555555554432 233455666666666789999999998764 3
Q ss_pred hHHHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChH--HHHH----------HHHHHH
Q 047067 160 EVSWNA-LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLE--QGKW----------VHAHVI 222 (566)
Q Consensus 160 ~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~--~a~~----------~~~~~~ 222 (566)
-...|. |.-.|.+..-++-+.++++-..+. -||. |+..=+.+|.. .|+.. +-.. ..+.+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 344444 345677888888888888777664 3443 22222333321 11111 1111 112222
Q ss_pred HhCC------CCc-----------HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-------HH
Q 047067 223 KSGG------QLV-----------AFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGL-------GK 278 (566)
Q Consensus 223 ~~~~------~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~ 278 (566)
+.++ +-- +..--.|+--|.+.+++++|..+.+++...++.-|-.-.-.++..|+ ..
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 2210 000 11112344558889999999999988866655544333333444443 33
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 279 ATVRWFEKMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
-|.+.|+-.-+.+..-|.. ---++.+++.-...+++..-++.....+=...|...+| +..+++..|.+.+|+++|-++
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhh
Confidence 4555555444444433322 12334444555567888888777666665555665555 788999999999999999888
Q ss_pred C-CC-CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcC-CCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 358 P-IE-PTAAVWGALL-GACRMHKNVELGAYAAERIFELD-PHDS-GPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 358 ~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
. .+ .|..+|-+++ .+|.++++++.|..+ +++.+ |.+. .....+++-|.+++.+--|.+.|+.+....
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 2 12 3566776555 667888999887554 45544 4333 344567888999999999999999887644
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=1.8e-06 Score=75.30 Aligned_cols=201 Identities=12% Similarity=0.040 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (566)
+...|..+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+++++.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44555566666666666666666666643 2233455555555555555555555555555543 333444444444444
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
..|++++|...|+ +......-|. ..||..+.-+..+.|+.+.|..+|+
T Consensus 115 ~qg~~~eA~q~F~-------------------------------~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 115 AQGRPEEAMQQFE-------------------------------RALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred hCCChHHHHHHHH-------------------------------HHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 4455554444444 4443211111 2344444444444444444444443
Q ss_pred hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
...+... -.......+.+...+.|++-.|..+++.. ...++..+.--.|..-...||.+.+-+.-.++....|..
T Consensus 164 raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 164 RALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 3332221 11223334444444555555555555444 122444444444444445555555555444444455544
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=0.00013 Score=74.65 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=66.8
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHH
Q 047067 123 YGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH-FSY 198 (566)
Q Consensus 123 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~ 198 (566)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|....|+.+++.-....-.|+. ..+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888899999999999999999999988654 24557888888888888888888888776543322433 333
Q ss_pred HHHHHHHh-ccCChHHHHHHHHHHHH
Q 047067 199 SSVFTALA-STGSLEQGKWVHAHVIK 223 (566)
Q Consensus 199 ~~ll~~~~-~~~~~~~a~~~~~~~~~ 223 (566)
...-..|. +.+..+++..+-.+++.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 33333332 34555555555444443
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=1.7e-05 Score=73.16 Aligned_cols=295 Identities=15% Similarity=0.119 Sum_probs=214.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 047067 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALI---AGHARKSEGEKALRTFSEMLREGFEPTHFSYS-SVFT 203 (566)
Q Consensus 128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~ 203 (566)
++.-.--|.+.+...|++.+|+.-|....+.|+..|-++- ..|...|+...|+.-|.+.++ ++||...-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 3333445666777789999999999999998888877764 578889999999999998887 578854322 2234
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCc--HhH------------HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHH
Q 047067 204 ALASTGSLEQGKWVHAHVIKSGGQLV--AFV------------GNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNS 266 (566)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 266 (566)
.+.++|.++.|..=|..+++...... ..+ ....+..+...|+...|++....+. ..|+..|..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 56789999999999999988753111 111 1223344566788888988888774 347778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHH----HHHH---H-
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAH----YVTF---V- 338 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~l---i- 338 (566)
-..+|...|.+..|+.=++..-+.. .-+..++.-+-..+...|+.+.+....+...+ +.||... |-.| +
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence 8899999999999988777766642 23455666666777788999888888866655 4566432 2211 1
Q ss_pred -----HHhhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 339 -----DLLGRAGLLDRALKFIREM-PIEPTA-----AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 339 -----~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
......++|.++.+-.+.. ...|.. ..+..+-.+++..+++.+|++...++++++|+|..++.--+.+|
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1234556777777766655 445542 23445557778889999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 047067 408 ASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~g 427 (566)
.-..++++|+.-+++..+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=1.4e-07 Score=89.27 Aligned_cols=244 Identities=13% Similarity=0.042 Sum_probs=125.8
Q ss_pred hcCCHHHHHHHHHhCCCC----ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047067 141 RFDQMDDAWFLFTALESK----NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW 216 (566)
Q Consensus 141 ~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 216 (566)
-.|.+..+..-.+ .... +.....-+.++|...|+++.++. +.... -.|.......+...+....+-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 3466666654443 1111 22334455666777776665442 22222 24555544444444433333333333
Q ss_pred HHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067 217 VHAHVIKSGGQ-LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN 295 (566)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (566)
-+...+..... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 33222222212 22223233334455566666666665543 33444444555555666666666666665542 222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGAC 373 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~ 373 (566)
.+...+. .+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+.
T Consensus 164 -~~l~qLa-------------------------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 164 -SILTQLA-------------------------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp -HHHHHHH-------------------------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred -HHHHHHH-------------------------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 2222222 22233333334567777777777 3345677777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL-NDAARARKMMKE 425 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 425 (566)
...|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++.
T Consensus 212 l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8888888888888888888888888888888777788877 556677777665
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=1.2e-05 Score=80.04 Aligned_cols=294 Identities=11% Similarity=-0.051 Sum_probs=163.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC---C--Ch-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067 131 VGSSLLDMYARFDQMDDAWFLFTALES---K--NE-VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204 (566)
Q Consensus 131 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 204 (566)
.+..+...|...|+.+.+.+.+....+ + +. .........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344444555555666555444444321 1 11 112223345567788888888888877642 223323331 112
Q ss_pred Hh----ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCH
Q 047067 205 LA----STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLG 277 (566)
Q Consensus 205 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 277 (566)
+. ..+..+.+.+.+... ....+........+...+...|++++|.+.+++..+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 22 234444444444331 111122233444556677888888888888887742 3456677778888888888
Q ss_pred HHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-CccHHHH-H--HHHHHhhhcCCHHHH
Q 047067 278 KATVRWFEKMLRNGI-APNQ--VTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPEEAHY-V--TFVDLLGRAGLLDRA 350 (566)
Q Consensus 278 ~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A 350 (566)
++|+..+++...... .|+. ..|..+...+...|++++|..+++....... .+..... + .++..+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 888888888776422 1222 2345667777888888888888855432221 1111111 1 223333344433322
Q ss_pred HHH---HHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHhcCChh
Q 047067 351 LKF---IREM-PIEPT---AAVWGALLGACRMHKNVELGAYAAERIFELD-P--------HDSGPHILLANIYASAGRLN 414 (566)
Q Consensus 351 ~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~ 414 (566)
.++ .... +..|. .........++...|+.+.|..+++.+.... . .........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1111 10011 1222345566778889999999988876532 1 12345566777888999999
Q ss_pred HHHHHHHHHHhCC
Q 047067 415 DAARARKMMKESG 427 (566)
Q Consensus 415 ~a~~~~~~m~~~g 427 (566)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887644
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=6.1e-06 Score=74.53 Aligned_cols=380 Identities=13% Similarity=0.046 Sum_probs=226.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHH-HHHHcc
Q 047067 30 QNTILNAYAKCGCLDEARKLFDEMPVK---DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSV-LKASGA 105 (566)
Q Consensus 30 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~ 105 (566)
+++.+.-+.+-.++++|.+++..-.++ +....+.|..+|....++..|-..|+++-.. .|...-|..- ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455566667788899999888765543 5556777888888888999999999988763 4544433211 112223
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchhHHHHHH----HHHHhcCCHHHHHHHHHhCCC-CChHHHHHHHHHHHhCCChhHHH
Q 047067 106 GATDDKFGRQVHAFCLKYGYDWNVYVGSSLL----DMYARFDQMDDAWFLFTALES-KNEVSWNALIAGHARKSEGEKAL 180 (566)
Q Consensus 106 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 180 (566)
.+.+. .+..+...+... + ...+-.+ ......+++..++.+.++.+. .+..+-+...-...+.|++++|+
T Consensus 91 A~i~A-DALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYA-DALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccH-HHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 33333 444444444321 1 1111111 122346788888889998884 56666666666677889999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-------------cH---------------h
Q 047067 181 RTFSEMLRE-GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQL-------------VA---------------F 231 (566)
Q Consensus 181 ~~~~~m~~~-g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~ 231 (566)
+-|+...+- |..| ...|+..+. ..+.++.+.|.....++++.|+.. |+ .
T Consensus 165 qkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999888765 4444 456665554 446788889999988888876422 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 232 VGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
.+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+++... -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 1222233467889999999999999755 677766554332 24555556665666665433 3467999999999
Q ss_pred HccCCHHHHHHHHHhHHhhCCC-ccHHHHHHHHHHhh-hcCCHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCC---H
Q 047067 307 SHAGLLDEGQGYFALMKKHGVE-PEEAHYVTFVDLLG-RAGLLDRALKFIREMPIEP-T-AAVWGALLGACRMHKN---V 379 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~---~ 379 (566)
++..-++.|..++..-...-.. .+...|+ |++++. -.-..++|.+-++.+...- + ......-+.--+..++ .
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999988432211111 1233343 344443 3345666666555441000 0 0000011111111111 1
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 380 ELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
..+++-+++.+++-- .+...-++.|.+..++..+.++|..-.+
T Consensus 400 R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 233344444444331 1455667788899999999999987765
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=7.1e-05 Score=69.40 Aligned_cols=402 Identities=13% Similarity=0.099 Sum_probs=235.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC---------------CcchH-------
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK---------------DMVTW------- 61 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~------- 61 (566)
.+|+.++|..++..+.... .++..++-.|.-.+--.|.+.+|..+-++.++. |..-|
T Consensus 69 hLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred hhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6799999999999888754 566666666666666678999999888777631 11111
Q ss_pred -------HHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH-ccCCCchHHHHHHHHHHHHhCCCCchhHHH
Q 047067 62 -------TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS-GAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133 (566)
Q Consensus 62 -------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 133 (566)
-+|.+.....-.+++|+++|.+.+.. .|+-...|.-+..| .+..-.+ .+..+..-..+. ++.++..-|
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYyd-vsqevl~vYL~q-~pdStiA~N 223 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYD-VSQEVLKVYLRQ-FPDSTIAKN 223 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHh-CCCcHHHHH
Confidence 12223322234578899999888765 45656666555544 4455555 677766665554 333444444
Q ss_pred HHHHHHHhc--CCHHHH--HHHHHhCCCCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067 134 SLLDMYARF--DQMDDA--WFLFTALESKNEVSWNALIAGHARK-----SEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204 (566)
Q Consensus 134 ~li~~y~~~--g~~~~A--~~~f~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 204 (566)
....-..+. |+..++ .++-+...+. | ..+.-.++. ...+.|++++-.+... -|. .-..++--
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iY 294 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIY 294 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheee
Confidence 443333332 222221 1122221111 1 111112222 2345666666555442 222 22334445
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH-----HHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHc
Q 047067 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM-----YAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGCAQH 274 (566)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 274 (566)
+.+.++..+|..+.+.+.. ..|...+...++.+ ......+.-|.+.|+-.... ++.--.+|.+.+.-.
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 6677777777666554321 12222222222221 12222355677777655322 333455666777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067 275 GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI 354 (566)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (566)
.++++.+-.+.....- +..|...-..+.++.+..|++.+|.++|-.+....++.+..-...|...|.+++.++-|.+++
T Consensus 373 ~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 7888888888887765 333444445677888889999999999966555444433333345668899999999999999
Q ss_pred HhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 047067 355 REMPIEPTAAVWGALL-GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEP 432 (566)
Q Consensus 355 ~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 432 (566)
-++.-..+..+.-.+| +-|-+.+.+--|-+.|+.+..++|... .| .|+-.....+|..+....-+|.|
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE-nW---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE-NW---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc-cc---------CCccchHHHHHHHHHcCCCCCCc
Confidence 9886333444444444 568888888889999999888888643 22 34445556677777665554444
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=2.5e-05 Score=88.16 Aligned_cols=297 Identities=12% Similarity=0.028 Sum_probs=193.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--------hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH---
Q 047067 131 VGSSLLDMYARFDQMDDAWFLFTALES----KN--------EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH--- 195 (566)
Q Consensus 131 ~~~~li~~y~~~g~~~~A~~~f~~~~~----~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--- 195 (566)
........+...|++++|...+..... .+ ......+...+...|++++|...+++....-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 334455666788999998888875421 11 111222334566899999999999988763111121
Q ss_pred -HHHHHHHHHHhccCChHHHHHHHHHHHHhCC---C--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---
Q 047067 196 -FSYSSVFTALASTGSLEQGKWVHAHVIKSGG---Q--LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-------R--- 259 (566)
Q Consensus 196 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--- 259 (566)
.....+...+...|+++.|...+.+.....- . ........+...+...|+++.|...+++... +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 2334455567789999999999888865321 1 1123445667788899999999998876521 1
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-CccHHH
Q 047067 260 -DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG--IAPN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPEEAH 333 (566)
Q Consensus 260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~~~~ 333 (566)
....+..+...+...|++++|...+++..... ..|. ...+..+.......|+.++|...+.......- ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 12234455666777899999999999876531 1122 33444556677789999999998855433211 111111
Q ss_pred H-----HHHHHHhhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCC
Q 047067 334 Y-----VTFVDLLGRAGLLDRALKFIREMPI-E-PTA----AVWGALLGACRMHKNVELGAYAAERIFELD------PHD 396 (566)
Q Consensus 334 ~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~ 396 (566)
+ ......+...|+.+.|..++..... . ... ..+..+..++...|+.++|...++++++.. +..
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 1122445668999999999877621 1 111 123456677888999999999999998752 122
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 397 SGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
..++..++.+|...|+.++|...+.+..+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3467788899999999999999999998744
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.71 E-value=1.7e-05 Score=79.89 Aligned_cols=192 Identities=14% Similarity=0.206 Sum_probs=106.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 047067 202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 202 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 281 (566)
+.+......+..|..+++.+..... -...|..+.+-|+..|+++.|+++|-+. ..++--|..|.+.|+++.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 3344455566666666666554432 1223445566677777777777776543 23445566677777777776
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 047067 282 RWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361 (566)
Q Consensus 282 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 361 (566)
++-.+.. |.......|..-..-.-..|++.+|.+++-.+ | .|+. .|.+|-+.|..++..++.++-. |
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h--~ 878 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G 878 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhC--h
Confidence 6654432 22223344444444455666676766666221 1 2332 4566667777777666666652 2
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 047067 362 TA--AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK 421 (566)
Q Consensus 362 ~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 421 (566)
+. .+-..+..-+-..|+++.|+..|-++ .-+..-.++|...+.|++|.++-+
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 22 34444555566666666666655443 234455566666666666665543
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=0.00012 Score=82.65 Aligned_cols=363 Identities=10% Similarity=-0.048 Sum_probs=220.2
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCCcch--HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCc
Q 047067 32 TILNAYAKCGCLDEARKLFDEMPVKDMVT--WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATD 109 (566)
Q Consensus 32 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 109 (566)
.....|...|++.+|..........+... ...........|++..+..++..+.......+..........+...++.
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33444555666666666555554332211 1111223445677777777776653221111222222233334456777
Q ss_pred hHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCh----HHHHHHHHHHHhC
Q 047067 110 DKFGRQVHAFCLKYGY------DWN--VYVGSSLLDMYARFDQMDDAWFLFTALES----KNE----VSWNALIAGHARK 173 (566)
Q Consensus 110 ~~~~~~i~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~ 173 (566)
+ .+........+.-- ++. ......+...+...|++++|...+++... .+. ..++.+...+...
T Consensus 426 ~-~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 426 S-EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred H-HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 7 77766666544311 111 12223344566789999999998887532 222 3456677778889
Q ss_pred CChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC---CcHhHHHHHHHHHH
Q 047067 174 SEGEKALRTFSEMLREGF---EP--THFSYSSVFTALASTGSLEQGKWVHAHVIKS----GGQ---LVAFVGNTLVDMYA 241 (566)
Q Consensus 174 g~~~~A~~~~~~m~~~g~---~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~ 241 (566)
|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++.... +.. .....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999988764311 11 1234455666788899999999998887653 211 12334555667788
Q ss_pred hcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHH
Q 047067 242 KSGSIEDAEKVFNRLLK------R--DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PNQVTF-----LCVLTACS 307 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~ 307 (566)
..|++++|...+++... + ....+..+...+...|++++|...+.+....... .....+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 88999999999887632 1 1334555667788899999999999888552111 111111 11223445
Q ss_pred ccCCHHHHHHHHHhHHhhCCCcc---HHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhc
Q 047067 308 HAGLLDEGQGYFALMKKHGVEPE---EAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPTA-AVWGALLGACRMH 376 (566)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~ 376 (566)
..|+.+.|...+........... ...+..+..++...|+.++|...+++. +..++. .+...+..++...
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 57899999998844332111111 111345677888999999999998876 222222 3556666778999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 047067 377 KNVELGAYAAERIFELDPH 395 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~ 395 (566)
|+.++|...+.+++++...
T Consensus 745 G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 745 GRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CCHHHHHHHHHHHHHHhCc
Confidence 9999999999999987644
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6e-05 Score=78.83 Aligned_cols=239 Identities=12% Similarity=0.070 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 239 (566)
+..|+.+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.+++-...+..+.+..-+|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 567999999999999999998887543 367789999999999999999999888888776666554 678999
Q ss_pred HHhcCCHHHHHHHHHhcCC-----------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 047067 240 YAKSGSIEDAEKVFNRLLK-----------------------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 296 (566)
|++.+++.+-++.+..-.. .++.-|..|...+...|++..|.+.-++. .+.
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 9999998887776532100 02334444555555555555554443332 234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047067 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACR 374 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 374 (566)
.||--+-.+|...+.+..|. +...++.....-..-|+.-|...|-++|-..+++.. +++. ....|.-|.-.|+
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 55666666665544433322 112222233344455666666677777766666655 4333 3344444444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
+.+ ++...+.++-.... ...--++.++-++.-|.|..-++.+-
T Consensus 1325 kyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1325 KYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred hcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 433 23333322222110 01123455566666666665555444
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=0.00011 Score=73.08 Aligned_cols=250 Identities=11% Similarity=0.051 Sum_probs=131.5
Q ss_pred HHhcCCHHHHHHHHHhCCC--C-ChHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC
Q 047067 139 YARFDQMDDAWFLFTALES--K-NEVSWNALIAGHAR----KSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALASTGS 210 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~ 210 (566)
+...|++++|.+.+++..+ | |...++. ...+.. .+....+.+.+.. .....|+. .....+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 3445666666666655432 1 3333332 222222 3333444444333 11122332 233344456667777
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCCHHHHHHH
Q 047067 211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DV--VSWNSMLTGCAQHGLGKATVRW 283 (566)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~ 283 (566)
+++|...+++.++.. +.+...+..+...|...|++++|...+++..+. +. ..|..+...+...|++++|+.+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777765 444556667777777788888888877766431 11 2355677777888888888888
Q ss_pred HHHHHHcCC-CCCHHHH-H--HHHHHHHccCCHHHHHHH--H-HhHHhhCC-CccHHHHHHHHHHhhhcCCHHHHHHHHH
Q 047067 284 FEKMLRNGI-APNQVTF-L--CVLTACSHAGLLDEGQGY--F-ALMKKHGV-EPEEAHYVTFVDLLGRAGLLDRALKFIR 355 (566)
Q Consensus 284 ~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~-~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (566)
+++...... .+..... . .++.-+...|....+.+. . ........ ..........+..+...|+.++|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 888754321 1111111 1 222223333433322222 2 11111100 0111112245667788899999999888
Q ss_pred hCC--CCC---CH----HHHHHHH--HHHHhcCCHHHHHHHHHHHHhc
Q 047067 356 EMP--IEP---TA----AVWGALL--GACRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 356 ~~~--~~p---~~----~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~ 392 (566)
.+. ... .. .+...++ -++...|+.+.|.+.+..++.+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 761 111 11 1222233 3356889999999999988764
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=2.5e-06 Score=76.27 Aligned_cols=118 Identities=11% Similarity=0.056 Sum_probs=97.0
Q ss_pred cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHH
Q 047067 309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA-CRMHKN--VELGA 383 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~ 383 (566)
.++.+++...+....+.. +.+...|..|...|...|++++|...|++. .+.| +...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 556677777775444433 557788899999999999999999999988 5566 56777777776 467777 59999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
++++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999998754
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=4.3e-06 Score=77.78 Aligned_cols=180 Identities=14% Similarity=0.020 Sum_probs=116.0
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----H
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DV---VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ----V 297 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 297 (566)
.....+..+...|.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|+..++++.+. .|+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3445566677778888888888888877643 2 21 35677777888888888888888888774 3321 1
Q ss_pred HHHHHHHHHHcc--------CCHHHHHHHHHhHHhhCCCccH-HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047067 298 TFLCVLTACSHA--------GLLDEGQGYFALMKKHGVEPEE-AHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGA 368 (566)
Q Consensus 298 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 368 (566)
++..+..++.+. |+.++|.+.+..+.+.. |+. ..+..+... +...... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 344444445443 56677777775544432 222 112111111 0000000 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 369 LLGACRMHKNVELGAYAAERIFELDPHDS---GPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45668889999999999999999877654 68889999999999999999999988754
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.62 E-value=0.00014 Score=67.30 Aligned_cols=328 Identities=13% Similarity=0.113 Sum_probs=174.9
Q ss_pred HHHHHHhcCChhHHHHHHccCCCCCcchHHHHH---HHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCc
Q 047067 33 ILNAYAKCGCLDEARKLFDEMPVKDMVTWTALI---SGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATD 109 (566)
Q Consensus 33 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 109 (566)
|-..+...|++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ ++||-..-
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~A------------- 108 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAA------------- 108 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHH-------------
Confidence 344455566677777766666666666666553 346666666666666666554 35553211
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047067 110 DKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE 189 (566)
Q Consensus 110 ~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 189 (566)
..--...+.+.|.++.|..=|+.+.+.++. +|...+|.+-+....+
T Consensus 109 ----------------------RiQRg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e- 154 (504)
T KOG0624|consen 109 ----------------------RIQRGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE- 154 (504)
T ss_pred ----------------------HHHhchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH-
Confidence 001112345667777777766665543210 0111111111000000
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHH
Q 047067 190 GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL---LKRDVVSWNS 266 (566)
Q Consensus 190 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ 266 (566)
.......+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.-++.. ...++...--
T Consensus 155 -----~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk 228 (504)
T KOG0624|consen 155 -----HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK 228 (504)
T ss_pred -----HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence 0111222233334455555555555555443 445555555555566666665555444333 3334445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH---H------HHHHccCCHHHHHHHHHhHHhhCCC-c--c
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT----FLCV---L------TACSHAGLLDEGQGYFALMKKHGVE-P--E 330 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l---l------~a~~~~g~~~~a~~~~~~~~~~~~~-p--~ 330 (566)
+-..+...|+.+.++...++-++ +.||... |-.| . ......+.+.++.+-.+...+.... + .
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 55555556666666666555555 3444321 1111 0 1122345555555555333333222 1 1
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...+..+-..|...|++.+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|++..+-.-
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG------ 380 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG------ 380 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH------
Confidence 223445556777889999999988887 67776 6688777888998999999999999999999998644322
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 047067 409 SAGRLNDAARARKMMKESG 427 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~g 427 (566)
.+.|.++.+...++.
T Consensus 381 ----le~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 381 ----LERAKRLKKQSGKRD 395 (504)
T ss_pred ----HHHHHHHHHHhccch
Confidence 245555555554443
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=6.4e-06 Score=88.67 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=162.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047067 227 QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR--------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT 298 (566)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 298 (566)
+.....|-..|......+++++|++++++.... -...|.+++..-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 455667777788888889999999999887432 3467888888888888888889999998874 223456
Q ss_pred HHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 047067 299 FLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPTAAVWGALLGAC 373 (566)
Q Consensus 299 ~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 373 (566)
|..|...|.+.+..++|.+++ .++.+.+ -...+|..+++.+.+.++-++|..++.+. |-+-......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 888889999999999999999 4545555 56778999999999999999999999877 3233455666666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK 429 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 429 (566)
.++|+.+++..+|+..+.-.|.....|...+++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999999999999999988774
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.2e-08 Score=58.28 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=28.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047067 124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALE 156 (566)
Q Consensus 124 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 156 (566)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 100
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=3e-05 Score=74.54 Aligned_cols=229 Identities=13% Similarity=0.091 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS-YSSVFTALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 239 (566)
++..+-..+...++.++|+.+..++++. .|+..| |..--.++...+ .++++...+..+++.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4455555556666667777777666653 344332 222222333333 3455555555555443 2233334333333
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
+.+.|+. ..++++.+++++++...+ |...|.....++.+.|+++++.+.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333331 013344444444442211 3344444444444444455554444
Q ss_pred HhHHhhCCCccHHHHHHHHHHhhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHH
Q 047067 320 ALMKKHGVEPEEAHYVTFVDLLGRA---GL----LDRALKFIREM-PIEP-TAAVWGALLGACRMH----KNVELGAYAA 386 (566)
Q Consensus 320 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~ 386 (566)
..+.+.+. -+...|+.....+.+. |. .+++.++..++ ...| |...|+.+...+... ++..+|...+
T Consensus 166 ~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 166 HQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 43333321 1223333333222222 11 23455555343 4456 557888888887763 3446688888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 047067 387 ERIFELDPHDSGPHILLANIYASAG------------------RLNDAARARKMMK 424 (566)
Q Consensus 387 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 424 (566)
.++++.+|.++.+...|+++|+... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 9988889999889999999998642 2356777777773
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=6.5e-08 Score=58.48 Aligned_cols=33 Identities=42% Similarity=0.708 Sum_probs=27.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHccCC
Q 047067 22 AFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP 54 (566)
Q Consensus 22 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 54 (566)
|+.||..+||.||+.|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888774
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=1.6e-06 Score=73.29 Aligned_cols=109 Identities=9% Similarity=-0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047067 299 FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH 376 (566)
Q Consensus 299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 376 (566)
+..+..++.+.|++++|...|....... +.+...|..+..++.+.|++++|...|++. ...| +...|..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344555566666666666665544432 234556666666666777777777776666 3344 445666666667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 377 KNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
|+.++|...+++++++.|+++..+...+.+..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777666655554443
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.0017 Score=68.50 Aligned_cols=143 Identities=19% Similarity=0.248 Sum_probs=116.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
.+..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+++.|.+++-..++.|.++..-.|.+.+ .||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 3467999999999999999999887653 3678899999999999999999999999888887787654 6899
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 340 LLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
+|++.+++.+-++++. -||......+..-|...|.++.|.-+|..+ +.|..|+..+...|.+..|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888764 578888888888899999999888777653 4667777777777777766654
Q ss_pred HHH
Q 047067 420 RKM 422 (566)
Q Consensus 420 ~~~ 422 (566)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 433
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=2.6e-05 Score=70.54 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067 243 SGSIEDAEKVFNRLL-KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL 321 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 321 (566)
.+++..+..+.++.+ +.+..+.+.......+.|++++|++-|+...+-+---....|+..+ +..+.++.+.|.++.+.
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 344444555555544 2334444444444445555555555555554422121223343333 22334455555555544
Q ss_pred HHhhCCC-------------cc--------HHHHHHHH-------HHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHH
Q 047067 322 MKKHGVE-------------PE--------EAHYVTFV-------DLLGRAGLLDRALKFIREMP----IEPTAAVWGAL 369 (566)
Q Consensus 322 ~~~~~~~-------------p~--------~~~~~~li-------~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l 369 (566)
+..+|+. || ..+-+.++ ..+.+.|+++.|.+.+-.|| -+.|++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 4444331 11 11222333 34568899999999999994 23467777554
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 370 LGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
.-. -..+++..+.+-+.-+++++|-.+.++..++-.|++..-++-|..++.+-
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 322 23566777888888889999988899999999999999999888876643
No 105
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=0.00081 Score=67.66 Aligned_cols=401 Identities=14% Similarity=0.069 Sum_probs=247.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILF 81 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 81 (566)
.|+.++|...-+..++.. ..+.+.|..+.-.+-.-.++++|.+.|.... +.|...|.-+.-.=++.|+++.....-
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 567778877776666644 3456677777666777789999999999754 446677877766667888888887777
Q ss_pred HHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhC-CCCchhHHHHHHH------HHHhcCCHHHHHHHHH
Q 047067 82 SQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYG-YDWNVYVGSSLLD------MYARFDQMDDAWFLFT 153 (566)
Q Consensus 82 ~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g-~~~~~~~~~~li~------~y~~~g~~~~A~~~f~ 153 (566)
.++.+. .|+ ...|.....+.--.|+.. .+..+.+...+.. -.|+...+.-... ...+.|..++|.+.+.
T Consensus 133 ~~LLql--~~~~ra~w~~~Avs~~L~g~y~-~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 133 NQLLQL--RPSQRASWIGFAVAQHLLGEYK-MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHh--hhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 777664 444 446777777777778877 7888877777765 2455555443322 3456788888888877
Q ss_pred hCCCC--ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCChHHHHHHHHHHHHhCC--
Q 047067 154 ALESK--NEV-SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA--STGSLEQGKWVHAHVIKSGG-- 226 (566)
Q Consensus 154 ~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~-- 226 (566)
.-... |-. .-.+....+.+.+++++|..++..+... .||..-|...+..+. -....+....++....+.-.
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 66543 322 3345567788999999999999999886 488877776665554 23333333466665544321
Q ss_pred -CCcHhHHHHHHHHHHhcCCHHH-HHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-------
Q 047067 227 -QLVAFVGNTLVDMYAKSGSIED-AEKVFNRLLKRD-VVSWNSMLTGCAQHGLGKATVRWFEKMLR----NGI------- 292 (566)
Q Consensus 227 -~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~------- 292 (566)
.|-....+ ++ ....+.+ .-+++..+.++. +.++..+.+.|-.-...+-..++...+.. .|.
T Consensus 288 e~p~Rlpls-vl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 288 ECPRRLPLS-VL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred ccchhccHH-Hh----CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 11111111 11 1122222 233344444443 34566666655443322211222222221 111
Q ss_pred ---CCCHH--HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHH
Q 047067 293 ---APNQV--TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAA 364 (566)
Q Consensus 293 ---~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~ 364 (566)
+|... |+..+...+-+.|+++.|..+++...++ .|+ ++.|..-.+++...|++++|..++++. .+ .||..
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 34443 4556677888999999999999776653 454 456666678899999999999999988 22 34443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK 421 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 421 (566)
+=.--..-..+..+.++|.++......-+- +....|..+-+-==..+.+..++.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~---~~~~~L~~mqcmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF---GAVNNLAEMQCMWFQLEDGEAYLR 494 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc---chhhhHHHhhhHHHhHhhhHHHHH
Confidence 322334445677899999998888766543 233444444333223444544443
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00097 Score=66.37 Aligned_cols=375 Identities=15% Similarity=0.104 Sum_probs=201.8
Q ss_pred HHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc--cCCC
Q 047067 34 LNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG--AGAT 108 (566)
Q Consensus 34 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~ 108 (566)
++.+...|++++|.+.-.++. +.|...+..=+-+..+.+++++|+.+.+.-.. +..+.+-+ +=++|+ +.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHccc
Confidence 567777888888888777665 33555566666677788888888855443221 01111111 233433 4555
Q ss_pred chHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 047067 109 DDKFGRQVHAFCLKYGYDWNV-YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187 (566)
Q Consensus 109 ~~~~~~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 187 (566)
.+ .+..... |.+++. .+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+-.- ..+... +.|.
T Consensus 95 ~D-ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~~q 165 (652)
T KOG2376|consen 95 LD-EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QLLQ 165 (652)
T ss_pred HH-HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HHHH
Confidence 55 4444443 333332 244444556677788888888888776554444433332211100 001111 1233
Q ss_pred HCCCCCCHHHHHHHHH---HHhccCChHHHHHHHHHHHHhCC-------CCcH-------hHHHHHHHHHHhcCCHHHHH
Q 047067 188 REGFEPTHFSYSSVFT---ALASTGSLEQGKWVHAHVIKSGG-------QLVA-------FVGNTLVDMYAKSGSIEDAE 250 (566)
Q Consensus 188 ~~g~~pd~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~li~~~~~~g~~~~A~ 250 (566)
.....| ..||..+.+ .+...|++.+|.+++....+.+. ..+. .+--.|.-.+-..|+.++|.
T Consensus 166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 323333 345655554 34577899999999988843321 0001 11123455677889999999
Q ss_pred HHHHhcCCC---Ch----hHHHHHHHHHHHc---------------------------------------------CCHH
Q 047067 251 KVFNRLLKR---DV----VSWNSMLTGCAQH---------------------------------------------GLGK 278 (566)
Q Consensus 251 ~~~~~~~~~---~~----~~~~~li~~~~~~---------------------------------------------g~~~ 278 (566)
.++...... |. +.-|.++..-... +..+
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 988877432 11 1112221110000 0011
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHH-
Q 047067 279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSH--AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIR- 355 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~- 355 (566)
.+.++-... -+..| ...+..++..+.+ ......+..++....+....-...+.-.++......|+++.|.+++.
T Consensus 325 q~r~~~a~l--p~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 325 QVRELSASL--PGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHhC--CccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111110000 01122 2344455554433 22456666666444433322234566677788889999999999988
Q ss_pred -------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCChhHHHHHH
Q 047067 356 -------EM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFEL----DPHD---SGPHILLANIYASAGRLNDAARAR 420 (566)
Q Consensus 356 -------~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~ 420 (566)
.+ .+.-.+.+..++...+..-++.+.|..++.+++.- .+.. ...+..++..-.+.|+-++|.+++
T Consensus 402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 44 23334455566666677777777788888877742 1221 223444555566779999999999
Q ss_pred HHHHh
Q 047067 421 KMMKE 425 (566)
Q Consensus 421 ~~m~~ 425 (566)
+++.+
T Consensus 482 eel~k 486 (652)
T KOG2376|consen 482 EELVK 486 (652)
T ss_pred HHHHH
Confidence 99986
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.53 E-value=0.00023 Score=72.19 Aligned_cols=255 Identities=15% Similarity=0.164 Sum_probs=144.8
Q ss_pred HhcCCHHHHHHHHHhCCCCChH--HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067 140 ARFDQMDDAWFLFTALESKNEV--SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV 217 (566)
Q Consensus 140 ~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 217 (566)
....++.+|..+++.+..+++. -|..+..-|...|+++.|.++|.+.- .+.-.+..|.+.|.++.|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 3445555555555555554333 24445556666666666666664431 234445556666666665554
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 047067 218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-- 295 (566)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 295 (566)
-.+. .|.......|-+-..-.-+.|++.+|+++|-.+..|+. -|..|-++|..+..+.+..+- .|+
T Consensus 814 a~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 814 AEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 3332 23333444444444455556666666666665555543 355566666666666655542 233
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCC---CC-HHHHHHHH-
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE---PT-AAVWGALL- 370 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~-~~~~~~ll- 370 (566)
..|-..+..-+...|++..|...|-... -|.+-+++|-..+.|++|.++-+.-+-. .. ...|.--+
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 3455666677778889998888774432 2567788999999999999887765211 11 12332211
Q ss_pred -----HHHHhcCCHHHH-------------HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 371 -----GACRMHKNVELG-------------AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 371 -----~~~~~~g~~~~a-------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
..+-++|-++.| ..+.+-..+ ..-+..+..++..+...|++++|.+-+-+..+.
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 222334444333 333332222 223457778888889999999998877666654
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.50 E-value=4.1e-06 Score=69.70 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
....-.+...+...|++++|..+|+-. .+.| +..-|-.|..++...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445667788999999999999988 5566 55788999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 047067 409 SAGRLNDAARARKMMKE 425 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~ 425 (566)
..|+.+.|++.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999876
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=1.8e-06 Score=72.97 Aligned_cols=94 Identities=16% Similarity=0.000 Sum_probs=86.1
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG 411 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 411 (566)
+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 556788889999999999999987 5556 66899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 047067 412 RLNDAARARKMMKESG 427 (566)
Q Consensus 412 ~~~~a~~~~~~m~~~g 427 (566)
++++|...++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998754
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=0.00014 Score=74.55 Aligned_cols=357 Identities=15% Similarity=0.152 Sum_probs=217.2
Q ss_pred CChhHHHHHH--HHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHC-C--------CCCCh
Q 047067 25 NDIAMQNTIL--NAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRL-G--------LKPNQ 93 (566)
Q Consensus 25 ~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~ 93 (566)
-|..+-.+++ +.|.--|+++.|.+-.+.+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 4667777776 45777899999988877664 4467999999999988888777666666432 1 12221
Q ss_pred hHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Q 047067 94 FTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK-NEVSWNALIAGHAR 172 (566)
Q Consensus 94 ~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~ 172 (566)
+=.-+.-.....|.++ .++.++....+. ..|=..|-..|.+++|.++-+.-..- =..||.....-+-.
T Consensus 802 -~eakvAvLAieLgMlE-eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 802 -DEAKVAVLAIELGMLE-EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -hhhHHHHHHHHHhhHH-HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1111111223456666 777777776664 34555677788888888775542221 12356666666666
Q ss_pred CCChhHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHH
Q 047067 173 KSEGEKALRTFSEM----------LREG---------FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG 233 (566)
Q Consensus 173 ~g~~~~A~~~~~~m----------~~~g---------~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (566)
.++.+.|++.|++. +... -..|...|..-.......|+.+.|..+|..+.. |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 77888888877653 2111 012333444444555566777777777665543 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG--- 310 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--- 310 (566)
-+++...+-.|+.++|-++-++ ..|..+...+...|-..|++.+|+..|.+.+. |...|+.|-..+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 4566666667777777777654 33556667788899999999999999988654 333333333222
Q ss_pred ------------CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-----------CCC--CCHHH
Q 047067 311 ------------LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-----------PIE--PTAAV 365 (566)
Q Consensus 311 ------------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----------~~~--p~~~~ 365 (566)
+.-.|..+|+.. |. -....+..|-++|.+.+|+++--+- .+. .|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 333344444331 11 1223466788999999888763221 122 35555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCCCC---------CchHHHHHHHHHhcCChh
Q 047067 366 WGALLGACRMHKNVELGAYAAERIFE----------------------LDPHD---------SGPHILLANIYASAGRLN 414 (566)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~~~~----------------------~~p~~---------~~~~~~l~~~~~~~g~~~ 414 (566)
.+.-..-+..+.+++.|..++-.+.+ +.|.. ......++..|.++|.+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 55555556667777777665544321 12221 125667899999999988
Q ss_pred HHHHHHHH
Q 047067 415 DAARARKM 422 (566)
Q Consensus 415 ~a~~~~~~ 422 (566)
.|.+-|.+
T Consensus 1163 ~AtKKfTQ 1170 (1416)
T KOG3617|consen 1163 AATKKFTQ 1170 (1416)
T ss_pred HHHHHHhh
Confidence 88766644
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=0.00015 Score=76.13 Aligned_cols=378 Identities=13% Similarity=-0.005 Sum_probs=198.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHH-
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA- 102 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a- 102 (566)
...|..|...|...-+...|.+.|++.- ..|..+|......|++..+++.|..+.-.--+.. +.-...++-+-.+
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 3467788888888788888888888765 4466788888899999999998888732221110 1111122222222
Q ss_pred -HccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHH---HHHHHHhCCChhH
Q 047067 103 -SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNA---LIAGHARKSEGEK 178 (566)
Q Consensus 103 -~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~ 178 (566)
+...++.. .+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|.+.+
T Consensus 571 yyLea~n~h-~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLH-GAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchh-hHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 22333333 3333333333322 4466777888888888888888888887766544443322 1223456777777
Q ss_pred HHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCChHHHHHH-------HHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 047067 179 ALRTFSEMLREG------FEPTHFSYSSVFTALASTGSLEQGKWV-------HAHVIKSGGQLVAFVGNTLVDMYAKSGS 245 (566)
Q Consensus 179 A~~~~~~m~~~g------~~pd~~t~~~ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~ 245 (566)
|+..+......- ..--..++..+...+...|-...+..+ +...+......+...|-.+.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-------- 720 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-------- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------
Confidence 777776654321 111112333333333333332223222 22222222222222222222
Q ss_pred HHHHHHHHHhcCCCChh--HHHHHHHH-HHHcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cC--
Q 047067 246 IEDAEKVFNRLLKRDVV--SWNSMLTG-CAQHGLG---K---ATVRWFEKMLRNGIAPNQVTFLCVLTACSH----AG-- 310 (566)
Q Consensus 246 ~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g-- 310 (566)
+|..+|-... |+.+ .+-.++.. .-..+.. + -+.+.+-.-+. ...+..+|..|+..|.+ .+
T Consensus 721 --dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 721 --DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred --HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCc
Confidence 2333333332 2211 11111111 1111111 1 01111111111 11223444444443332 11
Q ss_pred --CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047067 311 --LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAA 386 (566)
Q Consensus 311 --~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (566)
+...|...+....+.. ..+...|+.|.- +...|.+.-|...|-+. -..| ...+|..+.-.+..+.+++-|..++
T Consensus 796 ~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred chhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 2234555553333321 234455555543 36667777777776554 2234 5678888888888999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 387 ERIFELDPHDSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 387 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
.++..++|.+...+...+.+-...|+.-++..+|..
T Consensus 874 ~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999888887777777777877777777765
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.42 E-value=2.1e-05 Score=74.65 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=118.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChH
Q 047067 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP-THFSYSSVFTALASTGSLE 212 (566)
Q Consensus 134 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~ 212 (566)
-+.+.|...|+.+.+..-...-..|.......+...+...++-+.++.-+++.......+ +..........+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 344556666666655544444444455544444333332234445555554443333222 2233333334556677788
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHH----HcCCHHHHHHHHHHH
Q 047067 213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV-VSWNSMLTGCA----QHGLGKATVRWFEKM 287 (566)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~----~~g~~~~A~~~~~~m 287 (566)
+|.+++... .+.......+.+|.+.++++.|.+.++.|.+.+. .+...+..++. -.+.+.+|..+|+++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 777766532 3455556677888888888888888888864422 22223333332 233578888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCH-HHHHHHHHhC
Q 047067 288 LRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL-DRALKFIREM 357 (566)
Q Consensus 288 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 357 (566)
.+. ..++..+.+.+..++...|++++|.+++....... +-+..+...++-...-.|+. +.+.+++.++
T Consensus 194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 664 56677778888888888888888888874443322 22344455555555555655 4555666665
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=5.3e-05 Score=67.81 Aligned_cols=155 Identities=11% Similarity=0.098 Sum_probs=113.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 316 (566)
+-.|...|+++......+.+..+. ..|...++.++++..+++.++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777888777655544432221 01223566778888888877753 346778888888999999999999
Q ss_pred HHHHhHHhhCCCccHHHHHHHHHH-hhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 317 GYFALMKKHGVEPEEAHYVTFVDL-LGRAGL--LDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
..|+...+.. +.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++++
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9997666654 3356777777776 467777 59999999988 5566 567888888899999999999999999999
Q ss_pred cCCCCCchHH
Q 047067 392 LDPHDSGPHI 401 (566)
Q Consensus 392 ~~p~~~~~~~ 401 (566)
+.|.+..-+.
T Consensus 173 l~~~~~~r~~ 182 (198)
T PRK10370 173 LNSPRVNRTQ 182 (198)
T ss_pred hCCCCccHHH
Confidence 9987764443
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=9e-05 Score=80.24 Aligned_cols=227 Identities=12% Similarity=0.126 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHh-CC---CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHHH
Q 047067 195 HFSYSSVFTALASTGSLEQGKWVHAHVIKS-GG---QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-D-VVSWNSML 268 (566)
Q Consensus 195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li 268 (566)
...|..-+....+.++.+.|+++.+++++. ++ .--.-+|.+++++-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 455666677777788888888888877653 11 122346777777777777778888888888543 3 45688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc---HHHHHHHHHHhhhcC
Q 047067 269 TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE---EAHYVTFVDLLGRAG 345 (566)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g 345 (566)
..|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++....+. -|. .....-.+++-.+.|
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence 8888888999999999998876 4446678888888888888888888888444432 233 334455566777889
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCch-HHHHHHHHHhcCChhHHHHHH
Q 047067 346 LLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELD--PHDSGP-HILLANIYASAGRLNDAARAR 420 (566)
Q Consensus 346 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~-~~~l~~~~~~~g~~~~a~~~~ 420 (566)
+.+++..+|+.. .-.| ....|+.++..-.++|+.+.+..+|++++.+. |..... |...+..-.+.|+-+.+..+-
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999999877 2233 55789999999999999999999999998765 444333 333444334456655555554
Q ss_pred HHHH
Q 047067 421 KMMK 424 (566)
Q Consensus 421 ~~m~ 424 (566)
.++.
T Consensus 1695 arA~ 1698 (1710)
T KOG1070|consen 1695 ARAK 1698 (1710)
T ss_pred HHHH
Confidence 4444
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.9e-05 Score=76.68 Aligned_cols=245 Identities=9% Similarity=0.001 Sum_probs=173.9
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 047067 169 GHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED 248 (566)
Q Consensus 169 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 248 (566)
-+.++|+..+|.-.|+..++.+ +-+...|..|....+..++-..|...+.+.++.. +.+..+.-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567888888888888887764 3355677777777777888888888888888876 5567777778888888888888
Q ss_pred HHHHHHhcCCCC-hhHHHHHH---------HHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047067 249 AEKVFNRLLKRD-VVSWNSML---------TGCAQHGLGKATVRWFEKMLR-NGIAPNQVTFLCVLTACSHAGLLDEGQG 317 (566)
Q Consensus 249 A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 317 (566)
|.+.++.-.... ...|...- ..+..........++|-++.. .+.++|......|.-.|--.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888887652110 00000000 111122223445556655544 4545777788888888888999999999
Q ss_pred HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
.|+....-. +-|...||.|.-.++...+.++|...|++. .++|.- .++..|.-+|...|.+++|.+.+-.++.+.+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 996665532 446779999999999999999999999998 888976 48888889999999999999999999987544
Q ss_pred C----------CchHHHHHHHHHhcCChhHH
Q 047067 396 D----------SGPHILLANIYASAGRLNDA 416 (566)
Q Consensus 396 ~----------~~~~~~l~~~~~~~g~~~~a 416 (566)
+ ..++..|=.++.-.++.|.+
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 1 12455555555555555433
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=6.8e-05 Score=76.13 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=168.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067 125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204 (566)
Q Consensus 125 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 204 (566)
++|--.....+...+.++|-...|..+|+++ ..|...|..|...|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555556677888999999999999999985 5688889999999999999998888776 37899999988888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHH
Q 047067 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 281 (566)
..+..-+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88777788888887765332 1112222223368888898888865433 4568888888888999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 282 RWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 282 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
+.|..-.. ..|| ...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988877 4665 5689999999999999999999997777766 334456666777778889999999988877
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=2.2e-05 Score=79.56 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=152.2
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067 226 GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305 (566)
Q Consensus 226 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 305 (566)
++|-...-..+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555556677889999999999999999974 5788899999999999999999998887 47899999999888
Q ss_pred HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 047067 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGA 383 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 383 (566)
.-...-+++|.++++..... .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++.+.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88778888999888432211 1112223334578899998888765 5555 4578888888888889999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
+.|.+.+.++|++...|+++..+|.+.|+..+|...+++..+.+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999888763
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=5.1e-05 Score=80.49 Aligned_cols=188 Identities=9% Similarity=0.024 Sum_probs=133.6
Q ss_pred HHHHHHhccCChHHH-HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcC
Q 047067 200 SVFTALASTGSLEQG-KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHG 275 (566)
Q Consensus 200 ~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 275 (566)
.+=.+.+..|..+++ .+++.++.+ ++...+......+++.-..... ..++..+-.|.....+.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g 100 (694)
T PRK15179 33 LLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAH 100 (694)
T ss_pred HHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC
Confidence 333455666766554 666666532 3333333333333222222221 235778888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067 276 LGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI 354 (566)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (566)
++++|..+++...+ +.|+ ......+...+.+.+.+++|....+...... +-+......+..++.+.|++++|..+|
T Consensus 101 ~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 101 RSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred CcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999998 5776 4566777888999999999999997666543 335667777888899999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047067 355 REM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHIL 402 (566)
Q Consensus 355 ~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 402 (566)
++. .-.|+ ..+|.++..++...|+.++|...|+++++...+....|+.
T Consensus 178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 988 23454 5788889999999999999999999999876554445443
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.00016 Score=70.94 Aligned_cols=366 Identities=16% Similarity=0.064 Sum_probs=214.3
Q ss_pred HHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCh-hHHHHHHHHHccCCCchH
Q 047067 36 AYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQ-FTLSSVLKASGAGATDDK 111 (566)
Q Consensus 36 ~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 111 (566)
.....|+++.|...|-+.. ++|-+.|..-..+|+..|++++|++=-.+-++ +.|+. .-|+-.-.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~- 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE- 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH-
Confidence 3446899999999998643 66888899999999999999999876666555 46764 46777777788888888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhCCCCChHHHHHH-----HHHHHhCCChhHHHHHHHH
Q 047067 112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDA-WFLFTALESKNEVSWNAL-----IAGHARKSEGEKALRTFSE 185 (566)
Q Consensus 112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~ 185 (566)
.+..-+..-++.. +.+...++.|.+++ ..+.+ .+.|. ++..|..+ .+.+...-.+..-++.++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 7777777666553 45567778888777 11111 11111 11111111 1111111111111111111
Q ss_pred HHHC-CCCCCHHHHHHHHHHHhccC-------------------ChH----HHHHHHHHHHH-hCCCCcHhHHHHHHHHH
Q 047067 186 MLRE-GFEPTHFSYSSVFTALASTG-------------------SLE----QGKWVHAHVIK-SGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 186 m~~~-g~~pd~~t~~~ll~~~~~~~-------------------~~~----~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 240 (566)
-... +...+ ...++.+..... .+. ..........+ .....-..-...+.++.
T Consensus 158 ~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 158 NPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred CcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 0000 00000 000111111000 000 00000000000 00000011234567777
Q ss_pred HhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHccCCH
Q 047067 241 AKSGSIEDAEKVFNRLLK--RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP--N----QVTFLCVLTACSHAGLL 312 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~ 312 (566)
.+..+++.|++-+..... .++.-++....+|...|.+.+....-....+.|-.- + ...+..+..++.+.+++
T Consensus 235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 777888888888877643 344456667777888888888877777766655321 1 12333444566777888
Q ss_pred HHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067 313 DEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIF 390 (566)
Q Consensus 313 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 390 (566)
+.++..|.......-.|+. +.+....+++....+.. -+.|+. .--..=.+.+.+.|++..|+..|.+++
T Consensus 315 ~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred HHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8899988543333333332 33445556666655554 334544 223333677889999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 391 ELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 391 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+.+|+|+..|...+-+|.+.|.+..|.+--+...+.
T Consensus 386 kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999877666654
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=8.3e-05 Score=66.55 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=57.4
Q ss_pred HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047067 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNV 379 (566)
Q Consensus 302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 379 (566)
.+....+.|++.+|...+.+.... -++|...|+.+.-+|.+.|++++|..-|.+. .+.| +....+.+...+.-.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 444444445555555555333322 2344455555555555555555555544444 2233 234445555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 380 ELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
+.|+.++.......+.+..+-..|..+-...|++++|..+
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555555555555554555555555555555555555443
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1e-06 Score=54.07 Aligned_cols=35 Identities=37% Similarity=0.691 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCh
Q 047067 59 VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQ 93 (566)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 93 (566)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=8.5e-05 Score=69.04 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh---HH
Q 047067 193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQL--VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVV---SW 264 (566)
Q Consensus 193 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 264 (566)
.....+......+...|+++.|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345677788888999999999999999998865321 124667788999999999999999999843 2 222 46
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHH
Q 047067 265 NSMLTGCAQH--------GLGKATVRWFEKMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV 335 (566)
Q Consensus 265 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 335 (566)
..+..++.+. |+.++|++.|+++... .|+.. ....+..... . .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH--------HHHHH
Confidence 6666666655 7899999999999885 45532 2221111100 0 0000 01122
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067 336 TFVDLLGRAGLLDRALKFIREM----PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDP 394 (566)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 394 (566)
.+...|.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999998887 3234 346888999999999999999998888776555
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.29 E-value=0.001 Score=70.04 Aligned_cols=174 Identities=10% Similarity=0.026 Sum_probs=121.5
Q ss_pred HHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHH
Q 047067 247 EDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK 323 (566)
Q Consensus 247 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 323 (566)
..|+..+.+.. ..+...||+|.-. ...|.+.-|..-|-+-... .+.+..+|..+.-.|.+..+++.|...|.+.+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 45666666553 4577888887766 5567777777777666554 23367788888888899999999999998765
Q ss_pred hhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHH----------
Q 047067 324 KHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPTAAVWGALLGACRMHKNVELGAYA---------- 385 (566)
Q Consensus 324 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~---------- 385 (566)
.. .| +...|--........|+.-++..+|..- +-.|+..-|-....-...+|+.++-+..
T Consensus 878 SL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 SL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 43 44 3445544444455678888888888652 3346666666655556677776654444
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 386 AERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 386 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
.++.+.-.|+...+|...+....+.+.+.+|.....+..
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444455679998899999999999999988888776654
No 124
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=0.0013 Score=63.32 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067 130 YVGSSLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKS-EGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205 (566)
Q Consensus 130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 205 (566)
.++..+-..+...++.++|+.+.+++.+. +..+|+..-..+...| ++++++..++++.+... -+..+|..-.-.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 34556666777888999999999987764 4556776666777777 67999999999988642 2334455444344
Q ss_pred hccCC--hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc---CCH
Q 047067 206 ASTGS--LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQH---GLG 277 (566)
Q Consensus 206 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~ 277 (566)
.+.+. .+.+..+...+++.. +-+..+|+....++.+.|+++++++.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 44554 255666666666655 45566666666666666777777777776643 3555666655554443 212
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067 278 ----KATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308 (566)
Q Consensus 278 ----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 308 (566)
+++++...+++... +-|...|+.+...+..
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 34455554555431 1234445444444444
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=0.00022 Score=73.27 Aligned_cols=151 Identities=10% Similarity=0.022 Sum_probs=102.3
Q ss_pred CCCcchHHHHHH--HHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHh-C-------
Q 047067 55 VKDMVTWTALIS--GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKY-G------- 124 (566)
Q Consensus 55 ~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~-g------- 124 (566)
.-|..|-.+|+. -|.--|+.+.|.+-.+-++ +...|..+.+.|.+..+++ .++..+..|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLD-VAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLD-VAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhcccc-HHHHhhhhhhhhhhHHHHHHH
Confidence 347777778874 4777899999988776554 3467999999999999998 888777776532 1
Q ss_pred -CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047067 125 -YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFT 203 (566)
Q Consensus 125 -~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 203 (566)
-.++ ..-.-..-.-...|.+++|..+|.+.+. |..|=..|...|.+++|+++-+.=-+-.+ ..||..-..
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 1121 2223333345567888999999888665 33455667788999999887654322222 246666666
Q ss_pred HHhccCChHHHHHHHHHH
Q 047067 204 ALASTGSLEQGKWVHAHV 221 (566)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~ 221 (566)
-+...++.+.|.+.|++.
T Consensus 867 ~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 667778888888887753
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00041 Score=74.56 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
.++-.+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344444455555556666666666666666665555555555554
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=9.8e-05 Score=66.11 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047067 293 APNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALL 370 (566)
Q Consensus 293 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 370 (566)
.|+......+-.++...|+-+....+...... ..+.|......++....+.|++.+|...|++. +-.||...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 45433335566677777887777777744222 22445566667899999999999999999998 4345889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
-+|-+.|+.++|...|.+++++.|.++.+.+.|+-.|.-.|+++.|..++......+.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999998876543
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=1.8e-05 Score=66.38 Aligned_cols=97 Identities=25% Similarity=0.307 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556677788888888888888876 4345 55777888888888889999999999988889988888888999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 047067 409 SAGRLNDAARARKMMKESG 427 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~g 427 (566)
..|++++|...++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999888887643
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.4e-06 Score=52.38 Aligned_cols=35 Identities=29% Similarity=0.647 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 296 (566)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=0.0005 Score=73.11 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=117.5
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 047067 225 GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KR-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFL 300 (566)
Q Consensus 225 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 300 (566)
..+.+...+-.|.......|.+++|+.+++... .| +...+..+...+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 346668888899999999999999999999984 34 5677888999999999999999999999984 565 55566
Q ss_pred HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 047067 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLG 371 (566)
Q Consensus 301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 371 (566)
.+..++.+.|.+++|..+|+.+...+ +-+...+..+...+-..|+.++|...|++. ...|-...|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 67778889999999999997777633 334778888999999999999999999988 33455566665553
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=3.1e-06 Score=51.49 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 047067 58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKP 91 (566)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 91 (566)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00061 Score=61.16 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=69.5
Q ss_pred HHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 047067 338 VDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 415 (566)
|....-.+.+.+|.-+|++| ...|+..+.+....++...|++++|+.+++.++..+++++.+...++-.-...|+-.+
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 33344456688888899988 3678888889899999999999999999999999999999998888888888888766
Q ss_pred HH-HHHHHHHh
Q 047067 416 AA-RARKMMKE 425 (566)
Q Consensus 416 a~-~~~~~m~~ 425 (566)
+. +...+.+.
T Consensus 260 ~~~r~l~QLk~ 270 (299)
T KOG3081|consen 260 VTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHh
Confidence 54 44455443
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=7.5e-06 Score=49.76 Aligned_cols=34 Identities=32% Similarity=0.704 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP 294 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (566)
+.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888899999999999998888887
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00021 Score=70.20 Aligned_cols=129 Identities=10% Similarity=0.077 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067 231 FVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310 (566)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 310 (566)
....+|+..+...++++.|+.+|+++.+.++..+-.++..+...++-.+|++++++.+... +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566677778889999999999987777777778888888888889999999888642 224555555566678888
Q ss_pred CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 047067 311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361 (566)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 361 (566)
+++.|..+.+.+.... +-+..+|..|...|.+.|++++|+-.++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8999999886665532 3345688889999999999999999888887554
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0019 Score=63.16 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcC
Q 047067 268 LTGCAQHGLGKATVRWFEKMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAG 345 (566)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 345 (566)
...+...|++++|+..++.++.. .||.. ........+...++..+|.+.++.+... .|+ ....-.+.++|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33344556666666666666553 33333 3333344555666666666666444432 233 334444556666666
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 346 LLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 346 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
++.+|..++++. ...-|+..|..|..+|...|+..++... .+..|...|+|++|.......
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence 666666666655 2222455666666666666665554333 233455566666666666666
Q ss_pred HhC
Q 047067 424 KES 426 (566)
Q Consensus 424 ~~~ 426 (566)
.++
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 554
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0072 Score=54.48 Aligned_cols=246 Identities=9% Similarity=-0.033 Sum_probs=153.0
Q ss_pred cCCHHHHHHHHHhCC-C-CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH-HHHH
Q 047067 142 FDQMDDAWFLFTALE-S-KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQG-KWVH 218 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a-~~~~ 218 (566)
.|.+..++..-.... . .++..---|-++|...|.+...+.- ... |-.|....+..+......-++.+.- ..+.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 355555554433322 2 2333334455667777766544332 222 1234444444444444444443332 3444
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047067 219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT 298 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 298 (566)
+.+.......+......-...|.+.|++++|.+.......-.....| ...+.+..+.+-|...+++|++- -+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 55555544555444455566788999999999998874333333333 44556777889999999999883 26778
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047067 299 FLCVLTACSH----AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGA 372 (566)
Q Consensus 299 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 372 (566)
.+.|.+++.+ .+.+.+|.-+|+.+.+ ..+|+..+.+-..-+....|++++|..++++. ....++.+...++.+
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 8777777654 4568888889977654 35678888888888888899999999999888 323466677666666
Q ss_pred HHhcCCH-HHHHHHHHHHHhcCCCCC
Q 047067 373 CRMHKNV-ELGAYAAERIFELDPHDS 397 (566)
Q Consensus 373 ~~~~g~~-~~a~~~~~~~~~~~p~~~ 397 (566)
-...|.. +...+...++....|..+
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5555544 555677777777788765
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.99 E-value=0.00027 Score=59.12 Aligned_cols=113 Identities=10% Similarity=0.061 Sum_probs=86.0
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 047067 283 WFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE 360 (566)
Q Consensus 283 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 360 (566)
.|++... ..|+ ......+...+...|++++|...++.....+ +.+...+..+...|.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555 3443 3445566677778888888888886666544 446677888888888999999999988877 444
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 361 P-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 361 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 5 5677778888899999999999999999999998864
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.0012 Score=64.42 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=126.1
Q ss_pred CHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047067 245 SIEDAEKVFNRLLK------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGY 318 (566)
Q Consensus 245 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 318 (566)
++.+++..-+.++. ++...+...+.+.........+-.++.+ ... ..-...-|..-+ .....|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAK-RSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHH-HhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 34555555555543 2444555555544433333333333222 222 111223333333 44567999999999
Q ss_pred HHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 319 FALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
+..+... .+-|........+.+.+.|+.++|.+.++++ ...|+ ...+-++..++...|++++|+..+++...-+|++
T Consensus 329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 9665543 3445666677789999999999999999998 66777 5788888999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 397 SGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
+..|..|+.+|...|+..++.....++..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999988877754
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=0.00027 Score=69.49 Aligned_cols=121 Identities=18% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067 134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ 213 (566)
Q Consensus 134 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 213 (566)
+|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++++..... +-|...+..-...+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 344444445555555555555555544444455555555555555555555555331 1222333333333444444444
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047067 214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL 256 (566)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (566)
|..+.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.+
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 444444444432 222334444444444444444444444433
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0023 Score=57.12 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047067 233 GNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSM---LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA 309 (566)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 309 (566)
|..+.-+...+|+.+.|..+++.+..+-+.++... ..-+-..|++++|+++++.+++.. +.|.+++-.=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444555667788888888777643222222111 112345788999999999999875 44667776666666667
Q ss_pred CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHH
Q 047067 310 GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM---HKNVELGAY 384 (566)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~ 384 (566)
|+--+|++-+....+ .+..|.+.|.-+.+.|...|+++.|.-.++++ -+.| +...+..+...+-. ..+.+.+.+
T Consensus 134 GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777788877733332 25778999999999999999999999999998 3456 34445555544332 347788999
Q ss_pred HHHHHHhcCCCCCchHHHH
Q 047067 385 AAERIFELDPHDSGPHILL 403 (566)
Q Consensus 385 ~~~~~~~~~p~~~~~~~~l 403 (566)
.+.+++++.|.+...+.-+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999665444433
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0058 Score=66.02 Aligned_cols=171 Identities=12% Similarity=0.121 Sum_probs=95.4
Q ss_pred CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHH
Q 047067 55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSS 134 (566)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 134 (566)
..+...|..|+..|...+++++|.++.+.-.+. .|+...+-..+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~-------------------------------- 73 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI-------------------------------- 73 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--------------------------------
Confidence 345667778888888888888888887765553 4554433222211
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 047067 135 LLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQG 214 (566)
Q Consensus 135 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 214 (566)
.|.+.++.+++..+ .++.......++.-+..+...|... .-+...+-.+..+|-+.|+.+++
T Consensus 74 ---l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 74 ---LSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred ---HHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHH
Confidence 22222332222211 2233333333443333333344332 22334555666666666667777
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047067 215 KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN 290 (566)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (566)
..+++++++.. +.|+.+.|.+...|+.. ++++|++++.+. +..|...+++.++.++|.++...
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 77776666666 55666667777777777 777777766553 22355566677777777777663
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.3e-05 Score=47.43 Aligned_cols=31 Identities=42% Similarity=0.670 Sum_probs=27.4
Q ss_pred chHHHHHHHHHhCCCccHHHHHHHHHHHCCC
Q 047067 59 VTWTALISGYSQNDQPENAIILFSQMLRLGL 89 (566)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 89 (566)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00016 Score=55.71 Aligned_cols=92 Identities=23% Similarity=0.289 Sum_probs=76.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG 411 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 411 (566)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|...+++.++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667778889999999988876 3344 34677778888888899999999999999999988888889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 047067 412 RLNDAARARKMMKE 425 (566)
Q Consensus 412 ~~~~a~~~~~~m~~ 425 (566)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999888765
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.88 E-value=1.7e-05 Score=60.08 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 344 AGLLDRALKFIREM----PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 344 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
.|++++|..+++++ +..|+...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777788877777 2222455666678888888888888888888 667777766777788888899999999888
Q ss_pred HHH
Q 047067 420 RKM 422 (566)
Q Consensus 420 ~~~ 422 (566)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=4.5e-05 Score=55.25 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG-RLNDAARARKMMKE 425 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 425 (566)
++.+|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998865
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.4e-05 Score=46.29 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGI 292 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (566)
++||+|+.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.82 E-value=0.066 Score=56.51 Aligned_cols=409 Identities=15% Similarity=0.136 Sum_probs=230.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHH
Q 047067 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNA--YAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAII 79 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 79 (566)
.+++..|.+-.+.+++. .|+.. |...+.+ ..|.|+.++|..+++... ..|..|...+-..|...++.++|..
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45677788888877775 34433 3333444 357899999999998764 3477889999999999999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----------CHHHHH
Q 047067 80 LFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD----------QMDDAW 149 (566)
Q Consensus 80 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~ 149 (566)
+|++.... -|+..-...+..++.+.++.. .-+++--.+.+ .++..++.+=++++.+...- -+.-|.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk-~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYK-KQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99998864 688888888889998888877 43433333333 35566677767777665532 123466
Q ss_pred HHHHhCCCCC-----hHHHHHHHHHHHhCCChhHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067 150 FLFTALESKN-----EVSWNALIAGHARKSEGEKALRTFSE-MLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK 223 (566)
Q Consensus 150 ~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 223 (566)
+.++.+.+.+ ..-.-.-....-..|++++|++++.. ..+.-..-+...-+.-+..+...+++.+..++-.+++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6666665543 11111222344567889999999843 33332333444555667777888888888888888888
Q ss_pred hCCCCcHhHHHHHHHHH----------------HhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHH---HHcCCHHHHHHH
Q 047067 224 SGGQLVAFVGNTLVDMY----------------AKSGSIEDAEKVFNRLLKR-DVVSWNSMLTGC---AQHGLGKATVRW 283 (566)
Q Consensus 224 ~~~~~~~~~~~~li~~~----------------~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~g~~~~A~~~ 283 (566)
.|... |...++.+ ...+.++...+..++.... .-..|-+-+.++ -.-|+.++++..
T Consensus 255 k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 87332 33323222 2223333333333333211 111222223333 345777776554
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHH-------HHHHHHHHhhhcCCH-----HHHH
Q 047067 284 FEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEA-------HYVTFVDLLGRAGLL-----DRAL 351 (566)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~ 351 (566)
|-+-. |-+| .+..=+..|...=..++-..++.+.... .++.. -+.+.+....-.|.+ +.-.
T Consensus 331 y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 331 YFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 43322 2222 1111111222111222222222111110 11100 011222222222211 1111
Q ss_pred HHHHhC------C------CCCC---------HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 352 KFIREM------P------IEPT---------AAVWGALLGACRMHKNVE---LGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 352 ~~~~~~------~------~~p~---------~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
.++.+. + .-|. ..+.+.|+..+.+.++.. +|+-+++..+...|.|...-..|+.+|
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 111111 1 1121 124567778888877654 677777777788888888888899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCccC
Q 047067 408 ASAGRLNDAARARKMMKESGVKKE 431 (566)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~g~~~~ 431 (566)
.-.|-+..|..+++.+--+.++.+
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999888865555433
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.0003 Score=57.22 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=57.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHILLAN 405 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 405 (566)
+..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555666666666666666665 22232 2344556666666777777777777777666654 345666667
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 047067 406 IYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 406 ~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+|.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777766654
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.002 Score=54.63 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH--HHHHHHHHHhhhcCCHHH
Q 047067 274 HGLGKATVRWFEKMLRNGIAPN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE--AHYVTFVDLLGRAGLLDR 349 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~ 349 (566)
.++...+...++.+......-. ......+...+...|++++|...|+........|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555321100 112222233444455555555555444433322211 122223444444555555
Q ss_pred HHHHHHhC
Q 047067 350 ALKFIREM 357 (566)
Q Consensus 350 A~~~~~~~ 357 (566)
|+..++..
T Consensus 104 Al~~L~~~ 111 (145)
T PF09976_consen 104 ALATLQQI 111 (145)
T ss_pred HHHHHHhc
Confidence 55555443
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00034 Score=68.95 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=40.4
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
...|++++|.+.|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444554444444 2223 2334444444445555555555555555555555555555555555555555555555
Q ss_pred HHHHHh
Q 047067 420 RKMMKE 425 (566)
Q Consensus 420 ~~~m~~ 425 (566)
+++..+
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 554443
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.038 Score=53.17 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
+..+.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-..+... +-.++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455567788999999999888888999999999999999999877765432 123477888889999999999
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACR 374 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 374 (566)
+|..+..++ + +..-+.+|.++|++.+|.+.--+. .|...+..+..-+.
T Consensus 255 eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 255 EASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence 998887552 1 245678889999999988776554 25555544444443
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.78 E-value=0.051 Score=54.09 Aligned_cols=394 Identities=14% Similarity=0.143 Sum_probs=230.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHH
Q 047067 24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK---DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVL 100 (566)
Q Consensus 24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 100 (566)
+-|+.+|+.||.-+... .++++++.++++..+ ....|..-|..-.+..+++....+|.+.+..-+ +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 66899999999988766 999999999998733 567899999999999999999999999876533 344454444
Q ss_pred HHHccCC-Cch---HHHHHHHHHH-HHhCCCCc-hhHHHHHHHH---------HHhcCCHHHHHHHHHhCCCC---Ch--
Q 047067 101 KASGAGA-TDD---KFGRQVHAFC-LKYGYDWN-VYVGSSLLDM---------YARFDQMDDAWFLFTALESK---NE-- 160 (566)
Q Consensus 101 ~a~~~~~-~~~---~~~~~i~~~~-~~~g~~~~-~~~~~~li~~---------y~~~g~~~~A~~~f~~~~~~---~~-- 160 (566)
.-.-+.. ... +...+.++.+ .+.|+++- -..|+..++. |....+++..++++.++... |.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 4322221 111 1222333333 34455442 3345555554 34445677778888876531 11
Q ss_pred -----HHHHHHHHH-------HHhCCChhHHHHHHHHHHH--CCCCCCH-------------------------------
Q 047067 161 -----VSWNALIAG-------HARKSEGEKALRTFSEMLR--EGFEPTH------------------------------- 195 (566)
Q Consensus 161 -----~~~~~li~~-------~~~~g~~~~A~~~~~~m~~--~g~~pd~------------------------------- 195 (566)
..|..=|.. --+...+..|.+++++... .|+..+.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111110100 0112223333333333321 1111000
Q ss_pred ------------HHHHHHH---------------------HHHhccCC-------hHHHHHHHHHHHHhCCCCcHhHHHH
Q 047067 196 ------------FSYSSVF---------------------TALASTGS-------LEQGKWVHAHVIKSGGQLVAFVGNT 235 (566)
Q Consensus 196 ------------~t~~~ll---------------------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (566)
.+|...+ +.+...|+ .+++..+++..+..-...+..+|.+
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 11111222 2334444444443322333333333
Q ss_pred HHHHHHhcC---CHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 047067 236 LVDMYAKSG---SIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACS 307 (566)
Q Consensus 236 li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 307 (566)
+.+---..- ..+.....++++. ..-..+|-..+..-.+..-...|..+|.+..+.+..+ +.....+++.-++
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 332111111 1333333444432 1233467777777777778999999999999988877 6667777777665
Q ss_pred ccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHH
Q 047067 308 HAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPT--AAVWGALLGACRMHKNVEL 381 (566)
Q Consensus 308 ~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~ 381 (566)
.++.+-|..+| .-+.+.|- +..--...++-+...|+-..|..+|++. .+.|| ..+|..+|.--..-|+...
T Consensus 414 -skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred -cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 58899999999 44555443 3344467788889999999999999988 23444 4799999999999999999
Q ss_pred HHHHHHHHHhcCCCCC----chHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 382 GAYAAERIFELDPHDS----GPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 382 a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
+.++-++....-|.+. ..-..+.+.|.-.+.+..-..-++.|
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9999998887555221 13345666677666665544444444
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.0025 Score=53.94 Aligned_cols=122 Identities=8% Similarity=0.100 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH--hHHHHHH
Q 047067 163 WNALIAGHARKSEGEKALRTFSEMLREGFEPT---HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA--FVGNTLV 237 (566)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 237 (566)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...++.+......+.. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344443 3566666666666665542 111 112222334555566666666666666665422221 1223345
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 047067 238 DMYAKSGSIEDAEKVFNRLLKR--DVVSWNSMLTGCAQHGLGKATVRWFEK 286 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (566)
..+...|++++|+..++....+ ....+......|.+.|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566666666666666554332 233444555566666666666666654
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00088 Score=54.42 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=62.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhHHhhCCC--ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 047067 299 FLCVLTACSHAGLLDEGQGYFALMKKHGVE--PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLG 371 (566)
Q Consensus 299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 371 (566)
+..+...+...|++++|...|..+...... .....+..+...+.+.|++++|.+.++++ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555556666666666443332211 11234455667777777777777777765 22232 356677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 372 ACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
++...|+.+.|...++++++..|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7888888888888888888888887644
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.00013 Score=52.04 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 369 LLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888888888888888888888888888887653
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.0031 Score=65.08 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=71.8
Q ss_pred CCCChhHHHHHHHHHHHc--C---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067 257 LKRDVVSWNSMLTGCAQH--G---LGKATVRWFEKMLRNGIAPNQ-VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE 330 (566)
Q Consensus 257 ~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~ 330 (566)
...|..+|...+.+.... + ....|+.+|++.++ ..|+. ..+..+..++... .+..|.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~---------------~~~~~~ 395 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR---------------HSQQPL 395 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH---------------HhcCCc
Confidence 345778888888775432 2 36688888888888 46663 3333332222111 011110
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM---P-IEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
. ..++..+.+..++. + ...+...+.++.-.....|++++|...++++++++|+ ...|..++.+
T Consensus 396 ~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~ 462 (517)
T PRK10153 396 D------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKV 462 (517)
T ss_pred c------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 0 01112222222221 1 1123344555544444556666666666666666663 4566666666
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 047067 407 YASAGRLNDAARARKMMKES 426 (566)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~ 426 (566)
|...|+.++|...+++....
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666665543
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00061 Score=62.40 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=75.6
Q ss_pred HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 047067 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGA 383 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~ 383 (566)
..+.+++++|+..|...+... +-|..-|..-..+|.+.|.++.|.+=.+.. .+.|.. .+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 345677777777776555432 224445555567788888888887776665 666754 58888999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 047067 384 YAAERIFELDPHDSGPHILLANIYASAGRLN 414 (566)
Q Consensus 384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 414 (566)
+.|+++++++|++......|-.+--+.+...
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999998855555554444444433
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0002 Score=65.53 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=78.7
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA 416 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 416 (566)
.-+.+.+++++|+..|.+. .+.| |.+-|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999987 6777 6677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047067 417 ARARKMMKE 425 (566)
Q Consensus 417 ~~~~~~m~~ 425 (566)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999998876
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0021 Score=61.35 Aligned_cols=266 Identities=11% Similarity=-0.012 Sum_probs=156.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCh
Q 047067 136 LDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALASTGSL 211 (566)
Q Consensus 136 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~ 211 (566)
.+.+.+..++.+|+..+....+ .++.-|..-...+..-|++++|+--.+.-.+ ++|.. .+..-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHH
Confidence 3455566666666666655433 2444555556666666666666555544433 22221 2333333334444444
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH-HHHHHHcCCHHHHHHHHH
Q 047067 212 EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----RDVVSWNSM-LTGCAQHGLGKATVRWFE 285 (566)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 285 (566)
.+|.+.++. ...+ ....|...++.+.. |...+|-.+ ..++...|++++|...--
T Consensus 134 i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 444433330 0000 11122222222211 222334333 234666788888887766
Q ss_pred HHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHhHHhhCCCccHHHH-------------HHHHHHhhhcCCHHHH
Q 047067 286 KMLRNGIAPNQVTFLCVLT--ACSHAGLLDEGQGYFALMKKHGVEPEEAHY-------------VTFVDLLGRAGLLDRA 350 (566)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-------------~~li~~~~~~g~~~~A 350 (566)
..++.. ++ ..+..+++ ++-..++.+.+...|...... .|+...- ..=.....+.|++.+|
T Consensus 194 ~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 665532 11 12222222 334466777888777655443 3442221 1122345788999999
Q ss_pred HHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 351 LKFIREM-PIEP-----TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 351 ~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+++++++|.-..+|..-++++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 5555 445666666778899999999999999999999999999999999999999999999999987
Q ss_pred hCCC
Q 047067 425 ESGV 428 (566)
Q Consensus 425 ~~g~ 428 (566)
+...
T Consensus 349 q~~~ 352 (486)
T KOG0550|consen 349 QLEK 352 (486)
T ss_pred hhcc
Confidence 6443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.00083 Score=58.87 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666677777777777777766 22222 35777778888888999999999999998888888888888888
Q ss_pred HHhcCC
Q 047067 407 YASAGR 412 (566)
Q Consensus 407 ~~~~g~ 412 (566)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0014 Score=64.75 Aligned_cols=105 Identities=13% Similarity=0.057 Sum_probs=69.2
Q ss_pred HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067 305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 382 (566)
.+...|++++|...|....... +.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3344566666666664444432 223455666666777777777777777766 4455 455777777778888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067 383 AYAAERIFELDPHDSGPHILLANIYASA 410 (566)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 410 (566)
+..++++++++|+++.....+..+..+.
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888877666665554433
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0024 Score=55.95 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHH
Q 047067 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF 337 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 337 (566)
....+..+...+...|++++|+..|++..+....|. ...+..+...+.+.|++++|...+....... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777888888888888888888877533332 3567777778888888888888885555432 2234455566
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067 338 VDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
...|...|+...+..-++.. ...++.|.+.++++++.+|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66676766665554333221 012677888899999988886 4555555555443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.00098 Score=58.17 Aligned_cols=95 Identities=14% Similarity=-0.072 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
....|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777888889999999998877 33332 357888889999999999999999999999999988888888
Q ss_pred HHHH-------hcCChhHHHHHHHHHH
Q 047067 405 NIYA-------SAGRLNDAARARKMMK 424 (566)
Q Consensus 405 ~~~~-------~~g~~~~a~~~~~~m~ 424 (566)
.+|. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8888 7888887776666553
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.012 Score=52.65 Aligned_cols=162 Identities=13% Similarity=0.164 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL-TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL 341 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 341 (566)
.|..++-+....|+.+.|...++++... + |...-...+= .-+.-.|++++|.++++...... +.|..+|-.-+-+.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 3445666677789999999999998886 3 5543322222 12345789999999996655544 55667777667777
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---ChhHH
Q 047067 342 GRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG---RLNDA 416 (566)
Q Consensus 342 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 416 (566)
-..|+--+|.+-+.+. .+..|...|.-+...|...|+++.|.-.+++++=+.|.++..+..+++.+.-.| +.+-+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7778877888777665 455699999999999999999999999999999999999999999999887665 45568
Q ss_pred HHHHHHHHhCC
Q 047067 417 ARARKMMKESG 427 (566)
Q Consensus 417 ~~~~~~m~~~g 427 (566)
++++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 88888887744
No 165
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.001 Score=61.37 Aligned_cols=102 Identities=17% Similarity=0.086 Sum_probs=85.8
Q ss_pred CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047067 328 EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM---HKNVELGAYAAERIFELDPHDSGPHIL 402 (566)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 402 (566)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557889999999999999999999999887 4444 45566666666432 335678999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067 403 LANIYASAGRLNDAARARKMMKESGVK 429 (566)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 429 (566)
|+..+...|++.+|...|+.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986543
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.52 E-value=0.045 Score=55.48 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=107.4
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH
Q 047067 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS 197 (566)
Q Consensus 118 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 197 (566)
+.+.+.|-.|+... +.+.++-.|.+.+|.++|.+ +|....|+++|..|.--
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF-------- 674 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF-------- 674 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH--------
Confidence 34555666566543 44556777888898888755 56667777777766431
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH
Q 047067 198 YSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLG 277 (566)
Q Consensus 198 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (566)
-...-+...|..++-+.+.+.-.+-. -+..--.+...++...|+.++|..+. ..+|-.
T Consensus 675 --D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~ 732 (1081)
T KOG1538|consen 675 --DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWV 732 (1081)
T ss_pred --HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHH
Confidence 11223344455554444433322110 01111134456667778888777663 334555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
+-++++-+++-. .+..+...+...+-+...+..|.++|..+-+ ...++++-...++|++|..+-++.
T Consensus 733 d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 733 DMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 555555555433 2444555555556667777888888865543 235788888999999999999888
Q ss_pred C-CCCCH
Q 047067 358 P-IEPTA 363 (566)
Q Consensus 358 ~-~~p~~ 363 (566)
| +.||+
T Consensus 800 Pe~~~dV 806 (1081)
T KOG1538|consen 800 PEFKDDV 806 (1081)
T ss_pred ccccccc
Confidence 4 44554
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.51 E-value=0.085 Score=55.72 Aligned_cols=211 Identities=13% Similarity=0.115 Sum_probs=131.6
Q ss_pred cCCHHHHHHHHHhCCCC--ChHHHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067 142 FDQMDDAWFLFTALESK--NEVSWNALIAG--HARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV 217 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~~~--~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 217 (566)
.+++..|....+++..+ |. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-..|...++.+++..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 35566666666665442 22 23333333 46788888888888777665533 778888888888888888888888
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhHHHHHHHHHHH-cCC---------HHHHHHH
Q 047067 218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIED----AEKVFNRLLKRDVVSWNSMLTGCAQ-HGL---------GKATVRW 283 (566)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~-~g~---------~~~A~~~ 283 (566)
|+.+.+.. |+......+..+|.+.+.+.+ |.+++...+++--..|+.+ +.+.+ ... ..-|...
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHH
Confidence 88887764 446666777777877776543 5667776666655566543 33222 111 1234556
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 284 FEKMLRNG-IAPNQVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 284 ~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
++.+.+.+ -.-+..-...-+......|.+++|..++ ....+.-.+-+...-+--++.+...+++.+-.++-.+.
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666544 1112222333344556788999999999 44333333334444456678888999998877776655
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00034 Score=49.88 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=51.4
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 337 FVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
+...+.+.|++++|...|++. ...|+ ...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999998 55674 56888899999999999999999999999999874
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0051 Score=58.48 Aligned_cols=134 Identities=12% Similarity=0.149 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA-CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL 340 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 340 (566)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888888888888887543 2233344433333 23356777799999554443 45677788899999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 341 LGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
+.+.|+.+.|..+|++. ..-|. ...|...+.--...|+.+....+.+++.+.-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 22233 35999999999999999999999999999888754
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.47 E-value=0.00044 Score=50.64 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 370 LGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
-..+...++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999999988754
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.013 Score=55.94 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=53.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHc
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH-GLGKATVRWFEKMLRN----GIAPN--QVTFLCVLTACSH 308 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~ 308 (566)
.++.|.+.|++..|-+++.. +...|... |++++|++.|++..+. | .|. ...+..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34456666666665555433 44455555 6677777766665442 1 111 2334455556666
Q ss_pred cCCHHHHHHHHHhHHhhCCC-----ccHH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 309 AGLLDEGQGYFALMKKHGVE-----PEEA-HYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
.|++++|.++|+........ ++.. .+-..+-.+...|++..|.+.+++.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666444332211 1121 2222333444556666666666654
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.00024 Score=51.23 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=44.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788899999999999999998888889999999999999999888887654
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0024 Score=48.83 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL 321 (566)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 321 (566)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666665531 11223444444444445555555555533
No 174
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.37 E-value=0.19 Score=50.23 Aligned_cols=367 Identities=11% Similarity=0.088 Sum_probs=182.7
Q ss_pred CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHH
Q 047067 55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133 (566)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 133 (566)
+-|+.+|+.||+-+-.. .++++.+.+++|.. +.|+ ...|..-++.-....+++ ..+.+|+..+..-+. ...|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe-~VEkLF~RCLvkvLn--lDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFE-SVEKLFSRCLVKVLN--LDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhh--HhHHH
Confidence 34889999999977555 89999999999986 3454 557788888888889999 999999998876443 45555
Q ss_pred HHHHHHHh-cCCHHHH----HHHHHhCC------CCChHHHHHHHHH---------HHhCCChhHHHHHHHHHHHCCCC-
Q 047067 134 SLLDMYAR-FDQMDDA----WFLFTALE------SKNEVSWNALIAG---------HARKSEGEKALRTFSEMLREGFE- 192 (566)
Q Consensus 134 ~li~~y~~-~g~~~~A----~~~f~~~~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~- 192 (566)
..++--.+ .|+...+ .+.|+-.. -..-..|+..+.- |..+.+.+...++|+++...-+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 55543222 2333222 22222221 1233346655543 34445666677788887653211
Q ss_pred -----CCHHHHHHHHHHHh-------ccCChHHHHHHHHHHHH--hCCCCcHhH---------------HHHHHHHHHhc
Q 047067 193 -----PTHFSYSSVFTALA-------STGSLEQGKWVHAHVIK--SGGQLVAFV---------------GNTLVDMYAKS 243 (566)
Q Consensus 193 -----pd~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~li~~~~~~ 243 (566)
-|-.+|..-++... +...+-.|+++++++.. .|+.....+ |-.+|+-=-..
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 02223322222211 22334556666666543 232111111 11111100000
Q ss_pred ------CCHHHH--HHHHHhcC---CCChhHHHHH-------HHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHHH
Q 047067 244 ------GSIEDA--EKVFNRLL---KRDVVSWNSM-------LTGCAQHGL-------GKATVRWFEKMLRNGIAPNQVT 298 (566)
Q Consensus 244 ------g~~~~A--~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t 298 (566)
|.+-.- .=++++.. .-.+..|--- -..+...|+ -+++..+++.....-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000000 0001111100 001122222 3344444444443222222233
Q ss_pred HHHHHHHHHcc---CCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCC-CHHHHHHHH
Q 047067 299 FLCVLTACSHA---GLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEP-TAAVWGALL 370 (566)
Q Consensus 299 ~~~ll~a~~~~---g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll 370 (566)
|..+...--.. ...+....++ +......++|+. +|..++..-.|..-+..|..+|.+. +..+ ++.+.++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 32222211101 1133333444 222223334432 4566666666777777777777776 2333 455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK 429 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 429 (566)
.-++ .++.+.|.++|+--+...++++..-...++.+...++-..++.+|++....++.
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 5544 356677777777777777777655556666677777777777777777766544
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0024 Score=53.65 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=77.4
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 047067 337 FVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLN 414 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 414 (566)
..--+-..|++++|..+|+-+ -..| +..-|..|..++...++++.|+..|..+.-++++||.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334456789999999999877 2233 56678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047067 415 DAARARKMMKE 425 (566)
Q Consensus 415 ~a~~~~~~m~~ 425 (566)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.28 E-value=0.083 Score=48.95 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=84.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--C-hH---HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 047067 135 LLDMYARFDQMDDAWFLFTALESK--N-EV---SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS- 207 (566)
Q Consensus 135 li~~y~~~g~~~~A~~~f~~~~~~--~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~- 207 (566)
....+.+.|++++|.+.|+.+... + .. +.-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877652 1 12 2234556777888888888888887765322222233333333221
Q ss_pred -c---------------CCh---HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 047067 208 -T---------------GSL---EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSML 268 (566)
Q Consensus 208 -~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 268 (566)
. .+. ..|...++.+++. |-...-..+|...+..+...-...--.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1222333333332 22222223333322222111111111234
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 269 TGCAQHGLGKATVRWFEKMLRN--GIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
.-|.+.|.+..|+.-|+.+++. +.+........+..+|...|..++|..+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4466677777777777777663 112223455556666666666666666553
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.0009 Score=50.57 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067 274 HGLGKATVRWFEKMLRNGIA-PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALK 352 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (566)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. ...+.. +......+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777774321 2344445567777777777777777754 222211 22333344667777777777777
Q ss_pred HHHh
Q 047067 353 FIRE 356 (566)
Q Consensus 353 ~~~~ 356 (566)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.25 E-value=0.05 Score=46.45 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C-----CCCCHHH
Q 047067 292 IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P-----IEPTAAV 365 (566)
Q Consensus 292 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~ 365 (566)
..|+...-..|..+....|+..+|...|+....--+..|....-.+.++....+++.+|...++++ . -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 457777777788888889999999998876665556667777778888888889999998888877 1 23343
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 366 WGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.-.+...+...|....|+..|+.++..-|+- ..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3445677888899999999999999887764 3555667788899988888766655544
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.24 E-value=0.00022 Score=42.94 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCChhHHH
Q 047067 386 AERIFELDPHDSGPHILLANIYASAGRLNDAA 417 (566)
Q Consensus 386 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 417 (566)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.20 E-value=0.056 Score=51.60 Aligned_cols=124 Identities=10% Similarity=0.118 Sum_probs=73.0
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH-H
Q 047067 235 TLVDMYAKS-GSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-----PNQV-T 298 (566)
Q Consensus 235 ~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t 298 (566)
.+...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-.. ++.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344555555 667777766665521 11 234556777888999999999999988764322 2222 3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhHHhh--CCCcc--HHHHHHHHHHhhh--cCCHHHHHHHHHhCC
Q 047067 299 FLCVLTACSHAGLLDEGQGYFALMKKH--GVEPE--EAHYVTFVDLLGR--AGLLDRALKFIREMP 358 (566)
Q Consensus 299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 358 (566)
|...+-++...|++..|...++..... ++..+ ......|+.++-. ...+++|..-|+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 334444666788999999988554422 33323 3455566666653 456777777777773
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.00077 Score=48.69 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHK-NVELGAYAAERIFELDP 394 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 394 (566)
+...|..+...+...|++++|...|++. .+.| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777888888888999998888877 4456 4568888888899998 79999999999999887
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.25 Score=47.67 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047067 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH 376 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 376 (566)
.+.+..+.-|...|....|.++-.. .. .|+..-|...+.+|+..++|++-.++... +..++-|..++.+|...
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~---Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE---FK-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH---cC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 3555566677778888888877543 34 47888899999999999999998887654 34567888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 377 KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
|+..+|.....+ ..+..-..+|.++|+|.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999888777 12355678899999999998764443
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.005 Score=54.10 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=71.2
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC------------
Q 047067 250 EKVFNRL--LKRDVVSWNSMLTGCAQ-----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG------------ 310 (566)
Q Consensus 250 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------------ 310 (566)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677777777777764 4677777788888999999889999999988765421
Q ss_pred ----CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC
Q 047067 311 ----LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL 346 (566)
Q Consensus 311 ----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 346 (566)
+-+-|+++++.|...|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 235677778888888888888888888888777654
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0058 Score=60.57 Aligned_cols=55 Identities=15% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
.+++..|...|..++++.+++.=...|+-||..||+.|+..+.+.|++..|.++.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~ 161 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVA 161 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.14 E-value=0.0089 Score=46.48 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCcHhH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGF-EPTHFSYSSVFTALASTG--------SLEQGKWVHAHVIKSGGQLVAFV 232 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 232 (566)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566677777999999999999999999 999999999999887653 23446677888888888888888
Q ss_pred HHHHHHHHHh
Q 047067 233 GNTLVDMYAK 242 (566)
Q Consensus 233 ~~~li~~~~~ 242 (566)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.00048 Score=49.62 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 343 RAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
+.|++++|.++|+++ ...| +...+..+..++...|++++|..+++++...+|+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 345555555555554 2223 344445555555555555555555555555555544
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0041 Score=59.32 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhH----HhhCCC-ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHH
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALM----KKHGVE-PEEAHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPTAA 364 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~----~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 364 (566)
.|..|.+.|.-.|+++.|+..++.- .+.|-. .....+..+...+.-.|+++.|.+.|+.. + -.-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678899988877321 223321 12345677788888889999988888754 2 112345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFEL----D--PHDSGPHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
+.-+|.+.|....+++.|+..+.+=+.+ + .....++.+|+++|...|..+.|....+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677888888888888998888776543 2 2234578889999999999999887766654
No 188
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.11 E-value=0.02 Score=47.97 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 238 (566)
....-.+..-+.+.|++++|..+|+..... .|. ..-|-.+..++-..|++++|...|....... +.|+..+-.+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 333344444455566666666666655543 222 2233334444445555555555555555544 234444444555
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047067 239 MYAKSGSIEDAEKVFNR 255 (566)
Q Consensus 239 ~~~~~g~~~~A~~~~~~ 255 (566)
+|.+.|+.+.|++.|+.
T Consensus 112 c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 112 CYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 55555555555555543
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.013 Score=50.97 Aligned_cols=81 Identities=11% Similarity=0.116 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEP--THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 237 (566)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456666667777777777777777776542222 12355566666666666666666666666543 22233334444
Q ss_pred HHHH
Q 047067 238 DMYA 241 (566)
Q Consensus 238 ~~~~ 241 (566)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.10 E-value=0.013 Score=45.64 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHhHHhhCCCccHHHHH
Q 047067 265 NSMLTGCAQHGLGKATVRWFEKMLRNGI-APNQVTFLCVLTACSHAG--------LLDEGQGYFALMKKHGVEPEEAHYV 335 (566)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~ 335 (566)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+-.+.. ++-+...+++.+...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 899999999998877643 2345566777777778888888888
Q ss_pred HHHHHhhh
Q 047067 336 TFVDLLGR 343 (566)
Q Consensus 336 ~li~~~~~ 343 (566)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88776654
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.08 E-value=0.022 Score=54.13 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA-LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 240 (566)
+|..++...-+.+..+.|-.+|.+..+.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666666666666666666666665332 2223333333333 22245555577777766665 355666667777777
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 241 AKSGSIEDAEKVFNRLLKR------DVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
.+.++.+.|+.+|++.... -...|...+.-=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776432 224677777666667777777777777666
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.04 E-value=0.023 Score=45.86 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHH
Q 047067 166 LIAGHARKSEGEKALRTFSEMLREGFEPT--HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQ--LVAFVGNTLVDMYA 241 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 241 (566)
+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888776544 234556666777777777777777777654311 01222222333455
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 047067 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLT 269 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~ 269 (566)
..|+.++|.+.+-....++...|.--|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666654443333333333333
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.02 E-value=0.0077 Score=59.70 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=79.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047067 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSV 201 (566)
Q Consensus 128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 201 (566)
+......+++......+++.+..++.+.... -..|..++|+.|.+.|..++++.+++.=...|+-||..|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444555555555666666665554431 1234567888888888888888888887788888888888888
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 047067 202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS 243 (566)
Q Consensus 202 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 243 (566)
++.+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877776655655555445444444
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.00 E-value=0.0034 Score=61.63 Aligned_cols=63 Identities=17% Similarity=-0.060 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG---PHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
...|+.+..+|...|++++|+..++++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555542 255555555555555555555555544
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.011 Score=47.71 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=58.1
Q ss_pred HHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 047067 337 FVDLLGRAGLLDRALKFIREM---PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPH---DSGPHILLANIYA 408 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 408 (566)
+..++-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|+.++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556667777777777665 22221 235555667777888888888888888777676 5555566677777
Q ss_pred hcCChhHHHHHHHHHH
Q 047067 409 SAGRLNDAARARKMMK 424 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~ 424 (566)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888877765443
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.052 Score=46.32 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=90.6
Q ss_pred CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchH
Q 047067 326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH--DSGPH 400 (566)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 400 (566)
.+.|+...-..|...+...|+..||...|++. .+.-|....-.+.++....+++..|...++++.+..|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45788888888999999999999999999988 45568888889999999999999999999999998875 56678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 401 ILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
..++..|...|++.+|+..|+...+.-.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 8899999999999999999999987543
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.13 Score=46.43 Aligned_cols=231 Identities=12% Similarity=0.042 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC-hH-HHHHHHHHHHHhCCCCcHhHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL-ASTGS-LE-QGKWVHAHVIKSGGQLVAFVGNTL 236 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~l 236 (566)
...|+.-+.++.+....++|..-+....+.+ .||.. |...=..+ .+.|. .. ..+.+|.++...-..| +++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp----qesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP----QESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCc----HHHH
Confidence 3456666666777776666655444443221 12210 00000000 01121 11 1233444444321111 3556
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLK--RD--------VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
...|.-..-+++-...|+.-.. .. ...-+.++..+.-+|.+.-.+.++++.++...+-+......|.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 6665555445555555443322 12 2334556666666777777788888888765555666777777777
Q ss_pred HccCCHHHHHHHHHhHHhhCCCccHHHHHH-----HHHHhhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVT-----FVDLLGRAGLLDRALKFIREMPI-EP-TAAVWGALLGACRMHKNV 379 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~ 379 (566)
.+.|+.+.|..+|+...+..-..+....+. ....|.-++++.+|...+.+.+. +| |+...|+-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 788888888888865554332333222322 23344555666666666666521 22 334444444444455666
Q ss_pred HHHHHHHHHHHhcCCCC
Q 047067 380 ELGAYAAERIFELDPHD 396 (566)
Q Consensus 380 ~~a~~~~~~~~~~~p~~ 396 (566)
..|++..+.+++..|..
T Consensus 303 ~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 303 KDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHhccCCcc
Confidence 77777777776666654
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.0076 Score=56.30 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA----AVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHIL 402 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 402 (566)
...|...+..+.+.|++++|...|+.+ ...|+. ..+--+..++...|+++.|...|+++++..|++ +.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345666666666678888888888877 223432 355567777888899999999999998877765 445566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 047067 403 LANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
++.+|...|++++|.++++...+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888889999999998888764
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.88 E-value=0.45 Score=45.68 Aligned_cols=270 Identities=16% Similarity=0.150 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHHhCC---CCChHHHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCChH
Q 047067 142 FDQMDDAWFLFTALE---SKNEVSWNALIA--GHARKSEGEKALRTFSEMLREGFEPTHFSYS----SVFTALASTGSLE 212 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~----~ll~~~~~~~~~~ 212 (566)
.|+-..|+++-.+.. ..|-...--++. +-.-.|+++.|.+-|+.|.. |+.|-. .+.-..-+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 455666665554432 223333323332 23346888888888888865 223322 2223334677777
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCChh--HHHHHHHHHHH---cCCHHHHHH
Q 047067 213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL-----LKRDVV--SWNSMLTGCAQ---HGLGKATVR 282 (566)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~--~~~~li~~~~~---~g~~~~A~~ 282 (566)
.|.++-+..-..- +.-.....+.+...+..|+++.|+++.+.- .++++. .-..|+.+-+. ..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 7777776665543 233455677888888889999999888764 334432 22233333221 234556666
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----
Q 047067 283 WFEKMLRNGIAPNQVT-FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---- 357 (566)
Q Consensus 283 ~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 357 (566)
.-.+..+ +.||-+- -..-..++.+.|++.++-.+++.+-+....|+ .+.. -.+.+.|+.. .+-+++.
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gdta--~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGDTA--LDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCCcH--HHHHHHHHHHH
Confidence 6555555 5677433 33445678899999999999977766544444 3322 2344555532 2222222
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 047067 358 PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA-GRLNDAARARKMMKES 426 (566)
Q Consensus 358 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 426 (566)
.++|| ..+.-++..+....|++..|..-.+.+....|.. ..|..|.++-... |+-.+++..+.+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33564 4566777788888999999999999999999986 4888888887554 9998888888777654
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.84 E-value=0.004 Score=45.43 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=53.1
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067 338 VDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI 401 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 401 (566)
-..|.+.+++++|.++++++ ...| +...|.....++...|++++|.+.++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678899999999999988 5556 4567888888899999999999999999999998865433
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.35 Score=43.88 Aligned_cols=237 Identities=14% Similarity=0.056 Sum_probs=144.6
Q ss_pred cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH-ccCCCchH-HHHHHHHHHHHhCCCCchhHHHHH
Q 047067 58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS-GAGATDDK-FGRQVHAFCLKYGYDWNVYVGSSL 135 (566)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~-~~~~i~~~~~~~g~~~~~~~~~~l 135 (566)
...|+.-+..+++....++|..-++...... .||.+ |-..=..+ .+.|..-. ..+.+|..+.+.- ..-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHHH
Confidence 3457777788888888888776655554432 22211 00000000 01222111 3455666655531 2336777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CChH--------HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067 136 LDMYARFDQMDDAWFLFTALES--KNEV--------SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205 (566)
Q Consensus 136 i~~y~~~g~~~~A~~~f~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 205 (566)
...|.-..-+++-...|+.-.. ..+. .-+.++....-.|.+.-.+.++++..+...+-++.....+.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 7777766666666666655332 2222 33566667777788888888888888876666777777888888
Q ss_pred hccCChHHHHHHHHHHHHhCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCH
Q 047067 206 ASTGSLEQGKWVHAHVIKSGGQLV-----AFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLG 277 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 277 (566)
.+.|+.+.|...++...+..-..+ ..+.......|.-..++..|...|.+++.. |++.-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 888888888888887766433333 333333444566677788888888777543 555666655555667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH
Q 047067 278 KATVRWFEKMLRNGIAPNQVTFLCV 302 (566)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~l 302 (566)
.+|++.++.|++. .|...+-+++
T Consensus 303 ~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 303 KDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHhcc--CCccchhhhH
Confidence 8888888888873 5555444433
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.82 E-value=0.015 Score=51.21 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=66.1
Q ss_pred HHHHHhC--CCCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 047067 149 WFLFTAL--ESKNEVSWNALIAGHARK-----SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG------------ 209 (566)
Q Consensus 149 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~------------ 209 (566)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 345666777777766643 556666677778888888888888888887765421
Q ss_pred ----ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 047067 210 ----SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS 245 (566)
Q Consensus 210 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 245 (566)
+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 334577777777777777777777777777765543
No 203
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.81 E-value=0.09 Score=54.44 Aligned_cols=61 Identities=11% Similarity=-0.061 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
+...|..+.-.....|++++|...++.....+ |+...|..+...+...|+.++|.+.+++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455555444445566666666665555433 45566666666666667777766666654
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.79 E-value=0.16 Score=47.14 Aligned_cols=185 Identities=10% Similarity=0.051 Sum_probs=103.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--C-hhH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLLKR--D-VVS---WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA 309 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~--~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 309 (566)
....+.+.|++++|.+.|+.+... + ... .-.++.+|.+.+++++|+..|++..+.-..-...-+...+.+.+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877432 1 111 2345667788888888888888888743221223333333333310
Q ss_pred CCHHHHHHHHHhH---HhhCCCcc-----HHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047067 310 GLLDEGQGYFALM---KKHGVEPE-----EAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVEL 381 (566)
Q Consensus 310 g~~~~a~~~~~~~---~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 381 (566)
.. ....+... ....-.++ ...+..+++-|=...-..+|...+..+...--..- -.+..-|.+.|.+.-
T Consensus 118 ~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e-~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 118 AL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-LSVAEYYTKRGAYVA 193 (243)
T ss_pred hc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHH
Confidence 00 00000000 00000000 12334445555445555555554444410000011 123345788899999
Q ss_pred HHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 382 GAYAAERIFELDPHDS---GPHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 382 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
|..-++.+++--|+.+ .+...+..+|.+.|..++|..+...+.
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 9999999998777654 466788899999999999998877654
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.74 E-value=0.0031 Score=40.65 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999988777653
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.58 E-value=0.0074 Score=51.19 Aligned_cols=69 Identities=25% Similarity=0.278 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE-----SGVKKEP 432 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 432 (566)
.....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++++.. .|+.|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34556677788899999999999999999999999999999999999999999999998853 4765543
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.43 E-value=0.0058 Score=45.27 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFEL----DPH---DSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666677777777777777777777653 222 234666788888888888888888777643
No 208
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.048 Score=52.57 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
..++..|..++.+.+++..|++...++++++|+|..+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3566777888899999999999999999999999999999999999999999999999999873
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=1.7 Score=45.07 Aligned_cols=62 Identities=18% Similarity=0.037 Sum_probs=34.9
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCC-CCcc------------hHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 047067 24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPV-KDMV------------TWTALISGYSQNDQPENAIILFSQMLRL 87 (566)
Q Consensus 24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~------------~~~~li~~~~~~g~~~~A~~l~~~m~~~ 87 (566)
.|.+..|..|.......-.++.|+..|-+... +.+. .-.+=|.+| -|++++|.++|-+|.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh
Confidence 46677777777666666677777777765531 1110 111122222 36777777777666544
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.29 E-value=0.69 Score=45.19 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=87.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLLKR-------DVVSWNSMLTGCAQ---HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 305 (566)
++-.|....+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444566777777777777766433 11111223334445 67777777777776555556677777766665
Q ss_pred HHc---------cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHH----HHHHHH---HhC-----CCCC--C
Q 047067 306 CSH---------AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLD----RALKFI---REM-----PIEP--T 362 (566)
Q Consensus 306 ~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~~-----~~~p--~ 362 (566)
|-. ....++|...|... ..+.|+..+--.++..+...|... +..++- ... ...+ |
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg--Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG--FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH--HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 432 12355666666432 223344332222222233333211 122221 111 1122 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
-=.+.+++.++.-.|+.+.|.+.+++++.+.|+.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3345788889999999999999999999987764
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.24 E-value=0.008 Score=44.52 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPT-AAVWGALLGACRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 392 (566)
.+|+.+...|...|++++|++.|++. + -.|+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35566666666667766666666554 1 1122 356777777888888888888888877653
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.21 E-value=0.046 Score=43.63 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=74.8
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcCC
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS----GPHILLANIYASAGR 412 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 412 (566)
-+++..|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|+.-+++++++.-+.. .+|+.-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999999877 4444 668899999999999999999999999999753322 257778888999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 047067 413 LNDAARARKMMKESGV 428 (566)
Q Consensus 413 ~~~a~~~~~~m~~~g~ 428 (566)
-+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999988764
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.21 E-value=1.4 Score=43.34 Aligned_cols=407 Identities=13% Similarity=0.079 Sum_probs=202.2
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCChhHHHHHHccCCCCC-cchHHHHHHH--HHhCCCc
Q 047067 4 HLKKLKEARIVHAHILGSAFKND------IAMQNTILNAYAKCGCLDEARKLFDEMPVKD-MVTWTALISG--YSQNDQP 74 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~--~~~~g~~ 74 (566)
+.+++.++..||.++.+.- ..+ ....+.++++|-- .+++.-...+....+.. ...|-.+-.+ +.+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 3578899999999998763 333 3345677888763 34444444333332111 2345554443 3578889
Q ss_pred cHHHHHHHHHHHC--CCCC------------ChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCC----CCchhHHHHHH
Q 047067 75 ENAIILFSQMLRL--GLKP------------NQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGY----DWNVYVGSSLL 136 (566)
Q Consensus 75 ~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~----~~~~~~~~~li 136 (566)
++|++.|..-... +-+| |-.-=+.....+...|.+. +|+.++..++..=+ ..+..+|+.++
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~-EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFS-EGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 9999988777654 3222 1112234455677888888 88888888776544 47888888888
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChh-------------------------------HHHHHHHH
Q 047067 137 DMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE-------------------------------KALRTFSE 185 (566)
Q Consensus 137 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~-------------------------------~A~~~~~~ 185 (566)
-++++.=-++.- +.+...=..-|.-||..|.+.=..- --++++..
T Consensus 175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 887764222111 1111111122344444443321110 11111111
Q ss_pred HHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhc--CC
Q 047067 186 MLREGFEPTHFS-YSSVFTALASTGSLEQGKWVHAHVIKSGGQ----LVAFVGNTLVDMYAKSGSIEDAEKVFNRL--LK 258 (566)
Q Consensus 186 m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 258 (566)
....-+.|+... ...+...+.+ +.+++..+-+.+....+. .-...+..++....+.++...|.+.+.-+ .+
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 112223333221 1122222222 444444444433332111 11223344444555555555555555443 22
Q ss_pred CChhHH-------HHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH---HHHHccCC-HHHHHHHHHhH
Q 047067 259 RDVVSW-------NSMLTGCA----QHGLGKATVRWFEKMLRNGIAPNQVTF-LCVL---TACSHAGL-LDEGQGYFALM 322 (566)
Q Consensus 259 ~~~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~~~~~~~ 322 (566)
|+...- ..+-...+ ..-+...-+.+|+......+ |..-. ..|+ .-+-+.|. -+.|..+++.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 221100 01111111 11112223334444433222 21111 1111 12233344 56666666555
Q ss_pred HhhCCCccHHHHHHHH----HHhhhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHH
Q 047067 323 KKHGVEPEEAHYVTFV----DLLGRA---GLLD---RALKFIREMPIEP----TAAVWGALLGA--CRMHKNVELGAYAA 386 (566)
Q Consensus 323 ~~~~~~p~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~ 386 (566)
.+.. +-|...-|... ..|..+ ..+. .-..++++.++.| +...-|.|..| ...+|++.++.-.-
T Consensus 407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4432 22333222221 122211 1111 2233445556665 33455666665 46789999998888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 387 ERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 387 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
.-+.+..| ++.+|..++-+.....++++|..++..+
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 88888999 7789999999999999999999999875
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=2.1 Score=44.92 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
+--+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3344456667888888888888888888888888888888888877766655543 1345666778888888888
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
+|.+++.+... +.-.+.+|.+.|++.+|.++--+
T Consensus 762 EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 762 EAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88888755321 11467788888888888776543
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.11 E-value=0.12 Score=48.47 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=54.4
Q ss_pred ccCCHHHHHHHHHhHHhhCCCcc--HHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 047067 308 HAGLLDEGQGYFALMKKHGVEPE--EAHYVTFVDLLGRAGLLDRALKFIREM----PIEP-TAAVWGALLGACRMHKNVE 380 (566)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~ 380 (566)
..|++++|...|+...+.-.... ...+..+...|...|++++|...|+.+ |..| ....+-.+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 34555555555533332211110 123445666677777777777777766 2222 2345555666777888999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 047067 381 LGAYAAERIFELDPHDS 397 (566)
Q Consensus 381 ~a~~~~~~~~~~~p~~~ 397 (566)
.|...++++++..|++.
T Consensus 235 ~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHCcCCH
Confidence 99999999998888865
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.10 E-value=1.6 Score=42.91 Aligned_cols=364 Identities=13% Similarity=0.101 Sum_probs=207.0
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCc---chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHH
Q 047067 24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDM---VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVL 100 (566)
Q Consensus 24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 100 (566)
+.|+..|-.||.-|...|.+++.++++++|..|-+ ..|..-|++=....+++....+|.+.+...+. ...|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 66888999999999999999999999999997754 46988888877788999999999998876544 44455444
Q ss_pred HHHccCCCch-----HHHHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---------hcCCHHHHHHHHHhCCC-C--Ch-
Q 047067 101 KASGAGATDD-----KFGRQVHAFCLK-YGYDWN-VYVGSSLLDMYA---------RFDQMDDAWFLFTALES-K--NE- 160 (566)
Q Consensus 101 ~a~~~~~~~~-----~~~~~i~~~~~~-~g~~~~-~~~~~~li~~y~---------~~g~~~~A~~~f~~~~~-~--~~- 160 (566)
.-..+.++.. ...-+.++.++. .+++|- ...|+..+...- ...+++..++.+.++.. | |.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 4333333221 122344555544 234442 334444433321 12233444444444432 0 00
Q ss_pred ------H------------------------------HHHHHHHHHHhCC-----ChhHHHH--------HHHHHHHCCC
Q 047067 161 ------V------------------------------SWNALIAGHARKS-----EGEKALR--------TFSEMLREGF 191 (566)
Q Consensus 161 ------~------------------------------~~~~li~~~~~~g-----~~~~A~~--------~~~~m~~~g~ 191 (566)
. -|..+..|+.... ...++.+ ..+.=.+.|+
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 0 0111111111000 0000000 0000001111
Q ss_pred ----------------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 047067 192 ----------------------EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDA 249 (566)
Q Consensus 192 ----------------------~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 249 (566)
......|----.-+...++-+.|.+.... |.+..+..---+-..|.-..+-+..
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~lse~yel~nd~e~v 352 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHHHHHhhcccHHHH
Confidence 01111222222233445555555554433 2222222111122223223333333
Q ss_pred HHHHHhc---------------------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 047067 250 EKVFNRL---------------------------------LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPN 295 (566)
Q Consensus 250 ~~~~~~~---------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 295 (566)
...|++. ..+-..+|...+..-.+..-.+.|..+|-+..+.| +.++
T Consensus 353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~ 432 (660)
T COG5107 353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH 432 (660)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence 3333322 01123467778887777777889999999999988 6778
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHh-HHhhCCCccHHH-HHHHHHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHHH
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFAL-MKKHGVEPEEAH-YVTFVDLLGRAGLLDRALKFIREM--PIEPT--AAVWGAL 369 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~~-~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l 369 (566)
...+++++.-++ .|+...|..+|+. +... ||... -+-.+.-+.+.++-+.|..+|+.. .+..+ ..+|..+
T Consensus 433 vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~km 508 (660)
T COG5107 433 VYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKM 508 (660)
T ss_pred eeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHH
Confidence 888888887665 5788888999843 3332 33333 345667778889999999999865 22333 4688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 370 LGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
|.--..-|+...+..+-+++.+.-|...
T Consensus 509 i~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 509 IEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 9888889999999888888888888753
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.97 E-value=1.2 Score=40.29 Aligned_cols=196 Identities=18% Similarity=0.122 Sum_probs=118.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLL-----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304 (566)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (566)
..........+...+.+..+...+.... ......+......+...+.+..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444555566666666666666665543 22344555555666666667777777777666432221 11222222
Q ss_pred -HHHccCCHHHHHHHHHhHHhhCC--CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 047067 305 -ACSHAGLLDEGQGYFALMKKHGV--EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT--AAVWGALLGACRMHKN 378 (566)
Q Consensus 305 -a~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~ 378 (566)
.+...|+++.+...+........ ......+......+...++.++|...+.+. ...|+ ...+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56677777777777755433111 112333334444466677888888777776 33333 4667777777777778
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 379 VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 379 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
.+.+...+....+..|.....+..+...+...+.++++...+......
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888887775555666666666666778887777776653
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.94 E-value=0.24 Score=39.79 Aligned_cols=140 Identities=16% Similarity=0.103 Sum_probs=82.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (566)
.-.|..++..++..+..... +..-++-+|--....-+-+-..+.+ ..-|-..| ...+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~L---dsIGkiFD----------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETL---DSIGKIFD----------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHH---HHHGGGS-----------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHH---HHHhhhcC----------chhhcchHHHH
Confidence 34577777777777776632 3333444443222222222222222 22221122 24567777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067 352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK 429 (566)
Q Consensus 352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 429 (566)
..+-.++ .+.......+.+....|+-+.-.+++..+.+-+..+|....-++++|.+.|...++..++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 7776664 345556677888889999999999999988766667789999999999999999999999999999974
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.79 E-value=0.28 Score=40.53 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=47.5
Q ss_pred HHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 338 VDLLGRAGLLDRALKFIREM----PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
.....+.|++++|.+.|+.+ |..| ....--.|+.++...+++++|...+++.++++|.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34455778999999998887 4333 3345666888899999999999999999999988764
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.79 E-value=0.69 Score=47.32 Aligned_cols=55 Identities=11% Similarity=-0.002 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 047067 195 HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK 258 (566)
Q Consensus 195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (566)
..+...+..-+-+...+..|-++|..|-.. .+++++....+++.+|.++-++.++
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 344444444455555666666666665332 3466667777777777777776654
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.79 E-value=1.3 Score=39.72 Aligned_cols=172 Identities=11% Similarity=0.058 Sum_probs=85.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047067 238 DMYAKSGSIEDAEKVFNRLLK--R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL 311 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 311 (566)
..+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...+++.++.-..-...-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344556677777777766632 1 1234445666777777777777777777664211111222222222211110
Q ss_pred HHHHHHHHHhHHhhCCC---ccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 047067 312 LDEGQGYFALMKKHGVE---PEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVW--GALLGACRMHKNVELGAYAA 386 (566)
Q Consensus 312 ~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~ 386 (566)
..... ....... --...+..++.-|=......+|...+..+. +...- -.+..-|.+.|.+..|..-+
T Consensus 93 ~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 93 IPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred Cccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000 0000000 001234444555555555555555544441 11100 12345578889999999999
Q ss_pred HHHHhcCCCCCc---hHHHHHHHHHhcCChhHHH
Q 047067 387 ERIFELDPHDSG---PHILLANIYASAGRLNDAA 417 (566)
Q Consensus 387 ~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 417 (566)
+.+++.-|+.+. +...++.+|.+.|..+.+.
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999988887653 4567888888888887544
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.70 E-value=0.065 Score=52.93 Aligned_cols=96 Identities=11% Similarity=0.010 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA----AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
+...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567777888888888888888888875 666764 35888888888888888888888888886321 121111
Q ss_pred H--HHHhcCChhHHHHHHHHHHhCCC
Q 047067 405 N--IYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 405 ~--~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
. .+....+.++..++++.+.+-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11222334455566666665554
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.65 E-value=2 Score=42.14 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC---C----hHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047067 134 SLLDMYARFDQMDDAWFLFTALESK---N----EVSWNALIAGHAR---KSEGEKALRTFSEMLREGFEPTHFSYSSVFT 203 (566)
Q Consensus 134 ~li~~y~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 203 (566)
.|+-.|-...+++...++++.++.. + ...--...-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777778888887777653 1 1111223344555 6777888888877655555677777766665
Q ss_pred HH
Q 047067 204 AL 205 (566)
Q Consensus 204 ~~ 205 (566)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 224
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=1.3 Score=43.02 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=55.7
Q ss_pred HccCCHHHHHHHHHhHHhh---CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCCHH
Q 047067 307 SHAGLLDEGQGYFALMKKH---GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAA-VWGALL--GACRMHKNVE 380 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll--~~~~~~g~~~ 380 (566)
.+.|++..|.+.+...+.. +..|+...|........+.|++.+|+.--++.- .-|.. ++.-+. .++...++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777443321 234455667667777788888888888777662 23332 333232 4456678888
Q ss_pred HHHHHHHHHHhcCCC
Q 047067 381 LGAYAAERIFELDPH 395 (566)
Q Consensus 381 ~a~~~~~~~~~~~p~ 395 (566)
+|.+-++++.+.+.+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888888887654
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.55 E-value=0.44 Score=46.03 Aligned_cols=130 Identities=10% Similarity=0.009 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHH----hhCC-CccH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKML----RNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMK----KHGV-EPEE 331 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~-~p~~ 331 (566)
..|..|...|.-.|+++.|+..-+.-+ +-|-+. ....+..|.+++.-.|+++.|.+.++... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666777777888998887655432 223221 23467778888888899999988874332 2221 1234
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPTAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
....+|...|.-..++++|+.++.+- + .--....+-+|.+++...|..+.|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567788888888888888877653 1 112345666788888888988988888887765
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=1.2 Score=44.41 Aligned_cols=175 Identities=10% Similarity=0.127 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHhcCCCCh---hHH--HHHHHHHHHc-----CCHHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHc---
Q 047067 244 GSIEDAEKVFNRLLKRDV---VSW--NSMLTGCAQH-----GLGKATVRWFEKMLR-NGIAPNQ-VTFLCVLTACSH--- 308 (566)
Q Consensus 244 g~~~~A~~~~~~~~~~~~---~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~--- 308 (566)
..+..++. -......+. ..| ..++.+.... ...+.|+.+|.+... ..+.|+. ..|..+..++..
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 34444444 223333455 566 6666665442 235578888888882 2256663 333333322211
Q ss_pred ------cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHH
Q 047067 309 ------AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVE 380 (566)
Q Consensus 309 ------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~ 380 (566)
.....+|.+.-....+.+ +-|......+..++.-.|+++.|..+|++. .+.||. .+|......+.-.|+.+
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 123344444444444433 334555555666666677788888888777 556654 45555555566678888
Q ss_pred HHHHHHHHHHhcCCCCCchHHH--HHHHHHhcCChhHHHHHHH
Q 047067 381 LGAYAAERIFELDPHDSGPHIL--LANIYASAGRLNDAARARK 421 (566)
Q Consensus 381 ~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~ 421 (566)
+|.+.+++.++++|....+-.. .+++|... ..++|.+++-
T Consensus 390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 8888888888888775544332 33345443 3455555543
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.23 Score=48.09 Aligned_cols=137 Identities=10% Similarity=0.026 Sum_probs=98.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCH
Q 047067 268 LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL 347 (566)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 347 (566)
...|.+.|++..|...|++.... -+ +...-+.++...... .-..++..|.-.|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 45677888888888888876552 00 011111122222221 1233566788889999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047067 348 DRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA-ARARKMMK 424 (566)
Q Consensus 348 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 424 (566)
.+|++..++. ..+| |+...-.=..++...|+++.|+..|+++++++|+|-.+..-|+.+-.+.....+. .++|..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988877 4344 6666666778899999999999999999999999988888888887777766654 78888886
Q ss_pred h
Q 047067 425 E 425 (566)
Q Consensus 425 ~ 425 (566)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 5
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.39 E-value=0.16 Score=41.46 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 047067 327 VEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPTAAVWGALLGAC 373 (566)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 373 (566)
..|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455556666666666666666666655544 4444455666555443
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.41 Score=44.57 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=22.7
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047067 248 DAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN 290 (566)
Q Consensus 248 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (566)
++..+|+++.. .|+.+-.-|...+...|++.+|...|+.|.+.
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44455554432 13444444555555666666666666666663
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.28 E-value=0.18 Score=46.12 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=79.5
Q ss_pred HHHHHHhcC--CCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 047067 249 AEKVFNRLL--KRDVVSWNSMLTGCAQH-----GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG----------- 310 (566)
Q Consensus 249 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 310 (566)
.+..|.... ++|-.+|-+++..+..+ +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666665 67888888888888654 566667778899999999999999999998765532
Q ss_pred -----CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHH
Q 047067 311 -----LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLD 348 (566)
Q Consensus 311 -----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (566)
.-+=++.+++.|...|+.||.++-..|++++++.|-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 22347788899999999999999999999999988643
No 231
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.24 E-value=5.2 Score=44.42 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHH
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV--TFLCVLTACSHAGLLD 313 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~ 313 (566)
..-+|.++|+.++|.+.|. ..|++.+|+.+..+|... -|.. +-..|..-+..+++.-
T Consensus 958 Aal~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 3446777888887766654 578888888888876541 1222 2245666777788888
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
+|-++...... .| .-.+..|++...+++|..+....
T Consensus 1017 eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 88887743221 22 23556778888888888877665
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.11 E-value=7 Score=43.49 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHhCC
Q 047067 130 YVGSSLLDMYARFD--QMDDAWFLFTALE 156 (566)
Q Consensus 130 ~~~~~li~~y~~~g--~~~~A~~~f~~~~ 156 (566)
.-...+|..|.+.+ .++.|+....+..
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34455666666666 5566655555444
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.04 E-value=0.16 Score=42.89 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 047067 233 GNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR-----NGIAPNQVT 298 (566)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 298 (566)
...++..+...|++++|..+.+.+. .-|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445666666777777777776663 22556677777777777777777777766533 355665544
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=0.22 Score=45.67 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHH
Q 047067 333 HYVTFVDLLGRAGLLDRALKFIREM-------PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHIL 402 (566)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 402 (566)
.|+.-++. .+.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|+. |..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 3456677777777665 234555555 6777788888888888888888765543 456777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 047067 403 LANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
|+.+..+.|+.++|..++++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888888888888888887664
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.86 E-value=0.35 Score=39.41 Aligned_cols=95 Identities=9% Similarity=0.148 Sum_probs=61.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047067 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA 309 (566)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 309 (566)
..++.+++-++++.|+++....+++..=.-|+ .+-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 45666777777777777777777665411110 00000000 111234678888888888888888
Q ss_pred CCHHHHHHHH-HhHHhhCCCccHHHHHHHHHH
Q 047067 310 GLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDL 340 (566)
Q Consensus 310 g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~ 340 (566)
+++..|.++. .-...++++.+...|..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8999998888 666677887778888877754
No 236
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.84 E-value=0.058 Score=32.22 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888886
No 237
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.73 E-value=3 Score=37.42 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=27.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 047067 166 LIAGHARKSEGEKALRTFSEMLREGFE--PTHFSYSSVFTALASTGSLEQGKWVHAHVIKS 224 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 224 (566)
....+.+.|++.+|.+.|+.+...-.. --......+..++-+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455666666666666666553110 01122333444555555555555555555444
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.69 E-value=0.33 Score=44.50 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=74.2
Q ss_pred HHHHHHhCC--CCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 047067 148 AWFLFTALE--SKNEVSWNALIAGHARK-----SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG----------- 209 (566)
Q Consensus 148 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----------- 209 (566)
.++.|...+ ++|-.+|-+++..|... +..+-.-..++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 67888888888887654 556666777889999999999999999998876543
Q ss_pred -----ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 047067 210 -----SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS 245 (566)
Q Consensus 210 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 245 (566)
+-+-+..++++|...|+-||-.+-..|++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223367778888888888888887778887776654
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.62 E-value=3.2 Score=37.27 Aligned_cols=198 Identities=17% Similarity=0.115 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH-H
Q 047067 196 FSYSSVFTALASTGSLEQGKWVHAHVIKS-GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLT-G 270 (566)
Q Consensus 196 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~ 270 (566)
..+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+...... +......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555554444432 22334444455555566666666666666665431 1122333333 6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC
Q 047067 271 CAQHGLGKATVRWFEKMLRNGIAP----NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL 346 (566)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 346 (566)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..............+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 7778888888888888755 233 2334444444466678888888888554443221135667777788888888
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 347 LDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 347 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 89998888877 44454 445555555555677799999999999988886
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.60 E-value=1.3 Score=45.01 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=72.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 047067 197 SYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGL 276 (566)
Q Consensus 197 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (566)
-...++.-+.+.|-.+.|.++-.. . ..-.+...++|+++.|.++-++.. +...|..|.....+.|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 345555555566666665554221 1 123444556777777777655544 45577777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 277 GKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
++-|.+.|++... |..|+-.|.-.|+.+.-.++.......| -++.....+.-.|+.++..+++.+
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777766443 3344445555666655555554444433 133333444455666666666665
Q ss_pred CC
Q 047067 357 MP 358 (566)
Q Consensus 357 ~~ 358 (566)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.54 E-value=0.11 Score=30.94 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777778888888888888888877764
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.39 E-value=2.6 Score=35.16 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=20.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067 200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK 242 (566)
Q Consensus 200 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (566)
.++..+...+.......+++.+.+.+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444455555555555555444 2344444555555544
No 243
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.33 E-value=5.5 Score=38.68 Aligned_cols=285 Identities=15% Similarity=0.114 Sum_probs=171.1
Q ss_pred hHHHHHHHHHh--CCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc--cCCCchHHHHHHHHHHHHhCCCCchhH--HH
Q 047067 60 TWTALISGYSQ--NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG--AGATDDKFGRQVHAFCLKYGYDWNVYV--GS 133 (566)
Q Consensus 60 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~~~~~i~~~~~~~g~~~~~~~--~~ 133 (566)
-|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..+|.+-+ -.|+.+ .+++-|+-|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~-~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYE-DARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchH-HHHHHHHHHhcC---hHHHHHhHH
Confidence 46677666654 46666666665544322 5667777888887654 457777 888888888752 22221 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh-
Q 047067 134 SLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREG-FEPTHF--SYSSVFTALA- 206 (566)
Q Consensus 134 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~--t~~~ll~~~~- 206 (566)
.|.----+.|..+.|+..-+..... -...|.+.+...+..|+|+.|+++++.-.... +.+|.. .-..++.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 2222234668888887776665442 34578889999999999999999998876543 455543 2222333221
Q ss_pred --ccCChHHHHHHHHHHHHhCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHH
Q 047067 207 --STGSLEQGKWVHAHVIKSGGQLVAFVG-NTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 207 --~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 281 (566)
-..+...|+..-.+..+. .||..-. -.-..++.+.|++.++-.+++.+- +|.+..|. +..+.+.| +.++
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~g--dta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSG--DTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCC--CcHH
Confidence 122445555555555443 3333222 123467888999999999888883 34444332 22233444 4455
Q ss_pred HHHHHHHH-cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh-cCCHHHHHHHHHhC
Q 047067 282 RWFEKMLR-NGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR-AGLLDRALKFIREM 357 (566)
Q Consensus 282 ~~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 357 (566)
.-+++... ..++|| ..+...+..+-...|++..|..--+...+ ..|....|..|.+.-.. .|+-.++...+.+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 44444433 125555 45666677777778888777665544332 46777777777766543 47888887777665
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=1 Score=45.03 Aligned_cols=150 Identities=13% Similarity=0.048 Sum_probs=82.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (566)
-+..+...-+++-++.++ +.||..+.-.++ +--....+.++.+++++..+.|- ..+..- ......|.. .
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~~---~ 247 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGHF---W 247 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccch---h
Confidence 344556666666666666 556654433333 23334557777777755444321 011000 000011111 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067 352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH--DSGPHILLANIYASAGRLNDAARARKMMKESGVK 429 (566)
Q Consensus 352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 429 (566)
+.+.+-..+|-..+=..|..++.+.|+.++|.+.++++++..|. +..++..|++++...+.+.++..++.+--+-.+.
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222333455667778888888888888888876654 4457778888888888888888888876554443
Q ss_pred cCC
Q 047067 430 KEP 432 (566)
Q Consensus 430 ~~~ 432 (566)
+..
T Consensus 328 kSA 330 (539)
T PF04184_consen 328 KSA 330 (539)
T ss_pred chH
Confidence 433
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=94.23 E-value=0.82 Score=45.51 Aligned_cols=127 Identities=8% Similarity=0.001 Sum_probs=89.1
Q ss_pred HHHHHHHHcc-----CCHHHHHHHHHhHH-hhCCCccH-HHHHHHHHHhh---------hcCCHHHHHHHHHhC-CCCC-
Q 047067 300 LCVLTACSHA-----GLLDEGQGYFALMK-KHGVEPEE-AHYVTFVDLLG---------RAGLLDRALKFIREM-PIEP- 361 (566)
Q Consensus 300 ~~ll~a~~~~-----g~~~~a~~~~~~~~-~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p- 361 (566)
..++.+..+. ...+.|..+|.... ...++|+- ..|..+...+. ......+|.++.++. .+.|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455555442 23566777884444 33456653 33433332221 123455667776665 4455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
|......+..+....++++.|...|+++..++|+.+.++...+....-.|+.++|.+.+++..+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 66777777777778888999999999999999999999999999999999999999999986653
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=94.17 E-value=0.45 Score=40.31 Aligned_cols=84 Identities=10% Similarity=0.055 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 316 (566)
+...|++++|..+|+-+. ..|..-|..|..++...+++++|+..|......+. -|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 345677777777776552 23455566666666667777777777666554332 23344445555666666666666
Q ss_pred HHHHhHHh
Q 047067 317 GYFALMKK 324 (566)
Q Consensus 317 ~~~~~~~~ 324 (566)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655444
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.13 E-value=0.75 Score=43.79 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHH
Q 047067 170 HARKSEGEKALRTFSEMLREG--FEPTHFSYSSVFTALASTGSLEQGK 215 (566)
Q Consensus 170 ~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~ 215 (566)
+.++.+.++|+..+.+-...- ..--..+|..+..+.+..|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 445667777777776655421 1111234555556666666555543
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=5.2 Score=37.41 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=17.9
Q ss_pred hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 391 ELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 391 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
..+|+|...-..|+..|...|+.++|...+-.+
T Consensus 230 aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 230 AADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555555555555555544444
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.80 E-value=2.2 Score=43.27 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=85.6
Q ss_pred HHHHHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC
Q 047067 269 TGCAQHGLGKATVRWFE--KMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL 346 (566)
Q Consensus 269 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 346 (566)
......|+++++.++.+ ++.. .+ +..-...++.-+.+.|.++.|.++-.. |+ .-.++..++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D-------~~-----~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD-------PD-----HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS--------HH-----HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC-------hH-----HHhHHHHhcCC
Confidence 34455777888766664 1121 12 244467777777888888888887521 11 12355668899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 347 LDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 347 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
++.|.++.++.+ +...|..|......+|+++.|++.+++. .-+..|+-.|.-.|+.+.-.++-+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988887764 7779999999999999999999888874 35667777888888887777777666665
Q ss_pred C
Q 047067 427 G 427 (566)
Q Consensus 427 g 427 (566)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 5
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.80 E-value=3.4 Score=34.40 Aligned_cols=122 Identities=15% Similarity=0.249 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 310 (566)
..++..+.+.+........++.+... +....|.++..|++.+ ..+.++.++. .++......++..|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34555555566666666666665332 3456677777776653 3344444442 123344455666777777
Q ss_pred CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047067 311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA-GLLDRALKFIREMPIEPTAAVWGALLGACR 374 (566)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 374 (566)
.++++..++..+.. +...++.+... ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 77777666644321 22233333333 6777777777763 25567777766654
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=11 Score=39.86 Aligned_cols=326 Identities=10% Similarity=0.021 Sum_probs=173.2
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCch--HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047067 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD--KFGRQVHAFCLKYGYDWNVYVGSSLLDMYA 140 (566)
Q Consensus 63 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~li~~y~ 140 (566)
.+|+-+...+.+..|+++-..|...-.+- ...|.....-..+..+.. +.+..+-+.+... . .....|..+..--.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 45566666667777777655543211111 333444444443332221 1223332222211 1 23445666666667
Q ss_pred hcCCHHHHHHHHHhCCCC--------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067 141 RFDQMDDAWFLFTALESK--------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE 212 (566)
Q Consensus 141 ~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 212 (566)
.+|+.+-|..+.+.=+.. +..-+..-+.-..+.|+.+-...++-.|... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 788888888877654431 2223444455556666666666666555442 1111221111 2233
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--hc-----CCCChhHHHHHHHHHHHcCC---HHHH--
Q 047067 213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN--RL-----LKRDVVSWNSMLTGCAQHGL---GKAT-- 280 (566)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~g~---~~~A-- 280 (566)
.|..+|.+..+..-. ..|-+.|-...+. .+...|. .. ...-..........+++... -++|
T Consensus 590 ~a~~lY~~~~r~~~~------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhHHHHHHHHhhch------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 445555554442101 1122223222222 2222221 10 11111222223333433322 1111
Q ss_pred -----HHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067 281 -----VRWFEKMLR-NGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI 354 (566)
Q Consensus 281 -----~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 354 (566)
+.+.+.+.. .|..-...|.+--+.-+...|...+|.++-+..+ .||...|-.-+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 222222222 2333344556666667778899999988875432 578888888899999999999988888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 355 REMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 355 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
+++. .+.-|.-+..+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--+
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 8763 2556777889999999999998887664322 2577889999999998876443
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=2.2 Score=40.34 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHH--HHHHHHccCCHHHH
Q 047067 243 SGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV--TFLC--VLTACSHAGLLDEG 315 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~--ll~a~~~~g~~~~a 315 (566)
.|+..+|...++++.+ .|..+|+--=.++..+|+.+.-...+++.... ..||.. +|.. +.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4556666555655532 35566666666666666666666666666543 233332 2211 11223345666666
Q ss_pred HHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 316 QGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
++.-+...+.+ +.|.-.-.++...+.-.|+..++.++..+-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66554433322 222323344555556666666666666554
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.45 E-value=3.3 Score=42.65 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHhHHhhCC-Cc--cHHHHHHHHHHhhhcCCHHHHH
Q 047067 276 LGKATVRWFEKMLRNGIAPNQVTFLCVL-TACSHAGLLDEGQGYFALMKKHGV-EP--EEAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~ 351 (566)
..+.|.+++..+.+. -|+...|...- +.+...|++++|.+.|+....... -| ....+--+.-.+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344555555555552 34443332222 233345555555555532221000 01 1112223344455566666666
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHh
Q 047067 352 KFIREM-P-IEPTAAVWGALLGA-CRMHKNV-------ELGAYAAERIFE 391 (566)
Q Consensus 352 ~~~~~~-~-~~p~~~~~~~ll~~-~~~~g~~-------~~a~~~~~~~~~ 391 (566)
+.|..+ . -..+...|.-+..+ +...|+. ++|.++++++-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 666665 1 12223333333333 2344555 555556555543
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.28 E-value=6.1 Score=36.22 Aligned_cols=163 Identities=19% Similarity=0.201 Sum_probs=83.8
Q ss_pred HHhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---c
Q 047067 139 YARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKSEGEKALRTFSEMLREG-FEPTHFSYSSVFTALAS---T 208 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~---~ 208 (566)
-.+.|++++|.+.|+.+..+ ...+--.++.++.+.+++++|+..+++....- -.|| .-|..-|.+.+. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 34668888888888888753 23345556677888888888888888877643 2232 233333333331 1
Q ss_pred ----CChHHHHHHHH---HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH--HHHHHHHHHcCCHHH
Q 047067 209 ----GSLEQGKWVHA---HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSW--NSMLTGCAQHGLGKA 279 (566)
Q Consensus 209 ----~~~~~a~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~ 279 (566)
.+...+++.+. .+++.- |.+..+ .+|......+. |.... -.+..-|.+.|.+..
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya--------------~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY-PNSRYA--------------PDAKARIVKLN--DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC-CCCcch--------------hhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHH
Confidence 12222222222 222221 111111 11111110000 11111 123445778888888
Q ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067 280 TVRWFEKMLRNGIAPN----QVTFLCVLTACSHAGLLDEGQGYFAL 321 (566)
Q Consensus 280 A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 321 (566)
|..-+++|++. -|+ ...+-.+..+|...|..++|...-..
T Consensus 186 A~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 186 AINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 88888888875 222 23444555666666666666655433
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.02 E-value=8.5 Score=38.80 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=65.7
Q ss_pred HHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHH
Q 047067 299 FLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP-I-EPTA--AVWGALLGAC 373 (566)
Q Consensus 299 ~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~~~ 373 (566)
=..+..++-+.|+.++|.+.+ ++++.........+...|+..|...+.+.++..++.+-. + -|.. ..|+..+--.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 345666777889999999999 444444333345567778899999999999999988773 1 2333 4566555444
Q ss_pred HhcCC---------------HHHHHHHHHHHHhcCCCCC
Q 047067 374 RMHKN---------------VELGAYAAERIFELDPHDS 397 (566)
Q Consensus 374 ~~~g~---------------~~~a~~~~~~~~~~~p~~~ 397 (566)
+..++ -..|.++..++++.+|.-+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 43332 1346688889888887665
No 256
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.80 E-value=0.42 Score=41.50 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEPT------AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG 411 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 411 (566)
.-+.+.|++++|..-|.+. .+.|. .+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456778888888777765 22221 2445555567788899999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 047067 412 RLNDAARARKMMKESG 427 (566)
Q Consensus 412 ~~~~a~~~~~~m~~~g 427 (566)
++++|..-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998743
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.78 E-value=11 Score=37.36 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhHHhhC-CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH
Q 047067 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHG-VEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVW-GALLGAC 373 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~ 373 (566)
..|...+++-.+..-++.|..+|-...+.+ ..+++.++++++.-++ .|+..-|..+|+-- ..-||...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345667777777888999999997777777 5678888898888665 57888899998754 334565444 4556666
Q ss_pred HhcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 374 RMHKNVELGAYAAERIFELDP--HDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
..-++-+.|..+|+..++.-. .-...|..++..-+.-|+...+..+-++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 777888899999997664221 1234788888888888999888888777765
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=6.3 Score=42.11 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=71.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 316 (566)
.+-+.+.|++++|...|-+-..--.. ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 34445566777766655543221111 12444455555555666666666666654 3333455666777777766666
Q ss_pred HHHHhHHhhCC-CccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067 317 GYFALMKKHGV-EPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAER 388 (566)
Q Consensus 317 ~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (566)
++.+... .|. ..| ....+..+.+.+-+++|..+-.+... +......++ -..+++++|++.++.
T Consensus 452 efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 452 EFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 6554322 121 112 22345556666666666666655532 222222222 334666666665543
No 259
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.39 E-value=15 Score=37.91 Aligned_cols=382 Identities=11% Similarity=0.059 Sum_probs=216.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHccCCC--CCcc-hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067 28 AMQNTILNAYAKCGCLDEARKLFDEMPV--KDMV-TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG 104 (566)
Q Consensus 28 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 104 (566)
..++.||.--......+.++.+++.+.. |... -|-....-=.+.|..+.+.++|++-+. |++-+...|...+.-+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence 3444555433333344555666665543 3222 244444444567888888999988876 46666677777776665
Q ss_pred cCCCchHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHH---hC------
Q 047067 105 AGATDDKFGRQVHAFCLKY-GYD-WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHA---RK------ 173 (566)
Q Consensus 105 ~~~~~~~~~~~i~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~~------ 173 (566)
.....+...+..++.++.. |.+ .+...|...|..-..++++.....+++++.+--...++..-.-|. ++
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhh
Confidence 5443333777777777664 322 234556777777777888888888888877633333333222222 11
Q ss_pred CChhHHHHHHHHHHHC----CCCCCHHHHHHHH------------------HHHh-------ccCChHHHHHHHHHHHHh
Q 047067 174 SEGEKALRTFSEMLRE----GFEPTHFSYSSVF------------------TALA-------STGSLEQGKWVHAHVIKS 224 (566)
Q Consensus 174 g~~~~A~~~~~~m~~~----g~~pd~~t~~~ll------------------~~~~-------~~~~~~~a~~~~~~~~~~ 224 (566)
-..+++.++-...... -..+.......-+ ..+. ........+..++.-++.
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 1122222222111110 0001111111111 1111 111112222222222222
Q ss_pred C-------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047067 225 G-------GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD---VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP 294 (566)
Q Consensus 225 ~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (566)
. ..++..+|...++.-.+.|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|-.++....+--++-
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 1 13446678888888899999999999999886552 2344444444444588888888777766543332
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH-HHHHHHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHH
Q 047067 295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE-AHYVTFVDLLGRAGLLDRAL---KFIREM-PIEPTAAVWGAL 369 (566)
Q Consensus 295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l 369 (566)
...+-..-...+-..|++..|..+++.+...- |+. ..-.--+.+..+.|..+.+. +++... +.+-+..+.+.+
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 22222222233456789999999997766543 543 23333456677889998888 555544 223233333333
Q ss_pred HH-----HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067 370 LG-----ACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 370 l~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
.- -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 22 24567899999999999999999999899988888776653
No 260
>PRK09687 putative lyase; Provisional
Probab=92.16 E-value=11 Score=35.81 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=36.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047067 127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEG----EKALRTFSEMLREGFEPTHFSYSSVF 202 (566)
Q Consensus 127 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~t~~~ll 202 (566)
+|..+....+..+...|..+....+..-+..+|...-..-+.++.+.|+. .+++..+..+... .||...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444555555555433333333323334544444555555555543 3455555555332 34444444444
Q ss_pred HHHhcc
Q 047067 203 TALAST 208 (566)
Q Consensus 203 ~~~~~~ 208 (566)
.++...
T Consensus 113 ~aLG~~ 118 (280)
T PRK09687 113 NATGHR 118 (280)
T ss_pred HHHhcc
Confidence 444443
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.16 E-value=17 Score=38.13 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=25.2
Q ss_pred cCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067 40 CGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILF 81 (566)
Q Consensus 40 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 81 (566)
-|++++|++++-.|..+|.. |..+.+.|++-...+++
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLI 783 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHH
Confidence 48999999999999888753 34445555555544444
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.12 E-value=1.2 Score=41.65 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=62.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 047067 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLR-----NGIAPNQVTFLC 301 (566)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 301 (566)
..++..++..+..+|+.+.+.+.++++... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445678899999999999999999988543 678999999999999999999999998866 577777666655
Q ss_pred HHHH
Q 047067 302 VLTA 305 (566)
Q Consensus 302 ll~a 305 (566)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.10 E-value=0.49 Score=38.01 Aligned_cols=56 Identities=13% Similarity=-0.051 Sum_probs=52.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
-+.+..|+++.|++.|.+.+.+-|.++++|+.-+.+|.-+|+.++|..-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999988773
No 264
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=19 Score=38.41 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047067 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNV 379 (566)
Q Consensus 300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 379 (566)
...+..|.+.|-+++-.-++..|- .++.+|.-.--+.+++++|.++.++ +-|...|..||+.+...-.+
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrmG--------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRMG--------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhhc--------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 344445555555555555543321 1233333334445556666666554 34777888888776655433
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.96 E-value=8.6 Score=34.21 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFV 338 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li 338 (566)
+.+||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++--.|++..|.+-+ ..-....-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 456777777777788888888888887774 332 222222222334467777776655 3323222233233332222
Q ss_pred HHhhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhc
Q 047067 339 DLLGRAGLLDRALKFI-REMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHD-------SGPHILLANIYASA 410 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 410 (566)
-+.-++.+|..-+ ++.. ..|..-|...|-.+-- |++. -+.+++++.+...++ ..+|..|+.-|...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2334556665443 3332 3455556555544321 1111 122333433322222 24788999999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 047067 411 GRLNDAARARKMMKESGV 428 (566)
Q Consensus 411 g~~~~a~~~~~~m~~~g~ 428 (566)
|..++|..+|+..+..++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999999876543
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.91 E-value=0.9 Score=42.45 Aligned_cols=62 Identities=27% Similarity=0.295 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|++.++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455666677777788888888888888888888888888888888888888888877765
No 267
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=9.9 Score=34.52 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHhcCChhHHHH
Q 047067 368 ALLGACRMHKNVELGAYAAERIFEL----DPHDSGPHILLANIYASAGRLNDAAR 418 (566)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 418 (566)
+.|-.+....++..|++.++.--++ .|++..+...|+.+|- .|+.+++..
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 3333444445566666666554432 2444445555555543 344444433
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.67 E-value=0.36 Score=29.26 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 399 PHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999888854
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=13 Score=34.92 Aligned_cols=117 Identities=10% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHH---HHHHHHHHcCCHH
Q 047067 203 TALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-VVSWN---SMLTGCAQHGLGK 278 (566)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~~ 278 (566)
......++..++..+++.+...... +....-.+..+|...|+.+.|..++..++... ...|. +-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445677888888888887776532 34455668888899999999999998886432 11222 2233333333333
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHH-HhHH
Q 047067 279 ATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYF-ALMK 323 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~ 323 (566)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+ ..+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333332 34 4444445555666677777777666 4443
No 270
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.31 E-value=0.38 Score=28.52 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777763
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.86 E-value=15 Score=35.05 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHhC
Q 047067 177 EKALRTFSEMLREGFEPTHFSYSSVFTALAS--TG----SLEQGKWVHAHVIKSG 225 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~ 225 (566)
++.+.+++.|.+.|++-+..+|.+..-.... .. ....+..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4456778888888888888777664444333 22 2345666777776653
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.70 E-value=3.6 Score=35.13 Aligned_cols=49 Identities=31% Similarity=0.340 Sum_probs=23.5
Q ss_pred HhcCCHHHHHHHHHhCCCCChHHHHHH-----HHHHHhCCChhHHHHHHHHHHH
Q 047067 140 ARFDQMDDAWFLFTALESKNEVSWNAL-----IAGHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 140 ~~~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~ 188 (566)
++.+..++|+.-|..+.+.+--.|-.| .....+.|+...|...|++.-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 334455555555555554433222222 2234455555555555555544
No 273
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.47 E-value=14 Score=33.98 Aligned_cols=241 Identities=15% Similarity=0.231 Sum_probs=142.6
Q ss_pred cCCHHHHHHHHHhCCC----C---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccC
Q 047067 142 FDQMDDAWFLFTALES----K---NEVSWNALIAGHARKSEGEKALRTFSEMLRE---GF--EPTHFSYSSVFTALASTG 209 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~pd~~t~~~ll~~~~~~~ 209 (566)
..+.++|+.-|.+..+ + .-.+...||..+.+.+++++.++.|.+|..- .+ .-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467778877776543 2 2334566788899999999999988888542 11 224556777887777666
Q ss_pred ChHHHHHHHHHHHHh-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------------ChhHHHHHHH
Q 047067 210 SLEQGKWVHAHVIKS-----GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---------------DVVSWNSMLT 269 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~ 269 (566)
+.+.-...++.-++. +-..=-.+-+-|...|...|.+.+-.+++.++.+. -...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666655555443321 00011112345777888888888888888776211 1346777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HccCCHHHHHHHH-HhHHhhCC--Ccc---HHHHHHH
Q 047067 270 GCAQHGLGKATVRWFEKMLRN-GIAPNQVTFLCVLTAC-----SHAGLLDEGQGYF-ALMKKHGV--EPE---EAHYVTF 337 (566)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~-----~~~g~~~~a~~~~-~~~~~~~~--~p~---~~~~~~l 337 (566)
.|....+-.+...+|++.+.- .--|.+... .+|+-| .+.|.+++|..-| +....+.- .|. ..-|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888877777888876552 233454443 445555 3467888876544 55544322 222 2235566
Q ss_pred HHHhhhcCCHHHHHHHHH--hC-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067 338 VDLLGRAGLLDRALKFIR--EM-PI--EPTAAVWGALLGACRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~--~~-~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 393 (566)
..++.+.|-- -|+ +. |. .|.......|+.+|..+. ..+ |+++++.+
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd-I~e----FE~Il~~~ 329 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNND-IIE----FERILKSN 329 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhccc-HHH----HHHHHHhh
Confidence 6777666521 011 11 33 345567788888886543 333 55555433
No 274
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.44 E-value=2.9 Score=38.57 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAP--NQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
|+.-+..| +.|++..|...|...++....- ....+--|..++...|+++.|..+|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHH
Confidence 55444433 3455667777766666642110 1223334555555555555555555
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.40 E-value=0.5 Score=28.62 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 392 (566)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886644
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.84 E-value=8.8 Score=36.70 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCC-------CChHHHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC-
Q 047067 145 MDDAWFLFTALES-------KNEVSWNALIAGHARKSEG----EKALRTFSEMLREGFEPTHF--SYSSVFTALASTGS- 210 (566)
Q Consensus 145 ~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~- 210 (566)
...|..+|+.|.+ ++..++.+|+.. ..++. +.+...|+.+...|+..+.. +.+.++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456667777664 244455555544 33332 45667777777777655432 33333333332222
Q ss_pred -hHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067 211 -LEQGKWVHAHVIKSGGQLVAFVGNTLV 237 (566)
Q Consensus 211 -~~~a~~~~~~~~~~~~~~~~~~~~~li 237 (566)
...+..+++.+.+.|+++....|..+.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHH
Confidence 336677777777778777666665444
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.79 E-value=0.85 Score=26.97 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4577777777888888888888887776
No 278
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.57 E-value=28 Score=35.96 Aligned_cols=76 Identities=16% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhCCCC-------ChHHHHHHHHHHHhCCChhHHHHHH
Q 047067 112 FGRQVHAFCLKYGYDWNVYVG-SSLLDMYARFDQMDDAWFLFTALESK-------NEVSWNALIAGHARKSEGEKALRTF 183 (566)
Q Consensus 112 ~~~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~ 183 (566)
.+.+++..+.+. -|+...| -.-..++...|++++|.+.|+..... ....+--+.-.+.-..+|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 455555555443 1222222 22334455556666666666643321 1122223333445555666666666
Q ss_pred HHHHHC
Q 047067 184 SEMLRE 189 (566)
Q Consensus 184 ~~m~~~ 189 (566)
..+.+.
T Consensus 329 ~~L~~~ 334 (468)
T PF10300_consen 329 LRLLKE 334 (468)
T ss_pred HHHHhc
Confidence 666554
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.53 E-value=0.67 Score=43.71 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=75.8
Q ss_pred HHHHccCCHHHHHHHHHhHHhhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 047067 304 TACSHAGLLDEGQGYFALMKKHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVE 380 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 380 (566)
+-|.++|.+++|+..+..... ..| +..++..-..+|.+..++..|..=.+.. .+.. -...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 468899999999999954332 345 7777777788899999988777655544 2111 1235555555556678899
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 381 LGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 381 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
+|.+-++.+++++|.+. -|-..|+......++.-+
T Consensus 183 EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI----ELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHH
Confidence 99999999999999854 344455555555555443
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.48 E-value=20 Score=34.22 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=102.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHH
Q 047067 172 RKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS---GGQLVAFVGNTLVDMYAKSGSIED 248 (566)
Q Consensus 172 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 248 (566)
.+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-+..+++++.. ++|..+++-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467777887788887764 4566777777778888888888888888877654 233333443444555667899999
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHccCCHHHHHHHH-H
Q 047067 249 AEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA----PNQVTFLCVLTACSHAGLLDEGQGYF-A 320 (566)
Q Consensus 249 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~-~ 320 (566)
|++.-++..+- |.-+-.+....+..+|+..++.+...+-... .+ .-..-|-...-.+...+.++.|..+| .
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99988887544 4444556667777888898888877654321 11 01122333333455668899999999 5
Q ss_pred hHHhhCCCccH
Q 047067 321 LMKKHGVEPEE 331 (566)
Q Consensus 321 ~~~~~~~~p~~ 331 (566)
.+.+.--+.|.
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 55544333343
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.45 E-value=1.3 Score=28.22 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRN 290 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (566)
+|..+...|.+.|++++|+++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777763
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.38 E-value=23 Score=34.78 Aligned_cols=149 Identities=11% Similarity=-0.022 Sum_probs=75.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc--HHH
Q 047067 259 RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP---NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE--EAH 333 (566)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~--~~~ 333 (566)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++......+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345677788888888888888888888877643211 222333334445556777777777744443221111 111
Q ss_pred HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 334 YVTFVDLLGRAGLLDRALKF-IREMPIEPTAAVWGALLGACRM------HKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
...+...+.. ..+..... ........-...+..+..-+.. .++.+++...|+++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111110000 00000000 0000000001222222222333 3778889999999999999887777777666
Q ss_pred HHh
Q 047067 407 YAS 409 (566)
Q Consensus 407 ~~~ 409 (566)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 553
No 283
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.25 E-value=35 Score=36.74 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047067 115 QVHAFCLKYG-YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193 (566)
Q Consensus 115 ~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 193 (566)
++...+.+.. .+.....-..-+..+.+.+++....+ |..-+..+...--....+....|+.++|....+.+=..| ..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~ 161 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KS 161 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CC
Confidence 3444444432 22233334444555666777777777 332223355555556667777787777766666664444 22
Q ss_pred CHHHHHHHHHHHhccCC
Q 047067 194 THFSYSSVFTALASTGS 210 (566)
Q Consensus 194 d~~t~~~ll~~~~~~~~ 210 (566)
.+.....+++.+.+.|.
T Consensus 162 ~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 162 LPNACDKLFSVWQQSGK 178 (644)
T ss_pred CChHHHHHHHHHHHcCC
Confidence 33445555555554443
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.09 E-value=23 Score=34.29 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=26.8
Q ss_pred HhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCCChhHHHHH
Q 047067 140 ARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKSEGEKALRT 182 (566)
Q Consensus 140 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 182 (566)
....+.+.|+..+.+...+ --.++..+..+..+.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 3456777777777665543 123556666777777777776543
No 285
>PRK09687 putative lyase; Provisional
Probab=89.05 E-value=21 Score=33.89 Aligned_cols=236 Identities=8% Similarity=-0.044 Sum_probs=112.5
Q ss_pred CCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchH---HHHHHHHHHHHhCCCCchh
Q 047067 54 PVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDK---FGRQVHAFCLKYGYDWNVY 130 (566)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~---~~~~i~~~~~~~g~~~~~~ 130 (566)
..+|.......+.++...|. .++...+..+.. .+|...=...+.+++..++... .+..++..+.. -+++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHH
Confidence 44455444445555544443 233333333332 2333333344444444444220 12222221111 144555
Q ss_pred HHHHHHHHHHhcCCH-----HHHHHHHHh-CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067 131 VGSSLLDMYARFDQM-----DDAWFLFTA-LESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204 (566)
Q Consensus 131 ~~~~li~~y~~~g~~-----~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 204 (566)
+....+.+++..+.- ..+...+.. +..++...--..+.++.+.++ .+++..+-.+.. .+|...-...+.+
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 555555555444321 122233322 233444444455556666554 456666666654 2444444444555
Q ss_pred HhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 047067 205 LASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRW 283 (566)
Q Consensus 205 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 283 (566)
+.+.+ ..+.+...+..++. .++..+-...+.++.+.|+.+....+.+.+..++ ..-..+.++...|.. +|+..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHH
Confidence 55442 12334444444442 4466666667777777777543333334443333 234567777777774 68888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Q 047067 284 FEKMLRNGIAPNQVTFLCVLTACS 307 (566)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~a~~ 307 (566)
+.++.+. .||...-...+.+|.
T Consensus 257 L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhh--CCChhHHHHHHHHHh
Confidence 8877763 346555555555543
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.02 E-value=11 Score=30.67 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE 328 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 328 (566)
..+.-+..+...|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++...-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3444566777778877777777777653 3667777778888888888888888888666666643
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.76 E-value=22 Score=33.74 Aligned_cols=19 Identities=16% Similarity=-0.104 Sum_probs=12.1
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047067 372 ACRMHKNVELGAYAAERIF 390 (566)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~ 390 (566)
.+.+.++++.|...++-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776543
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.56 E-value=36 Score=36.00 Aligned_cols=273 Identities=13% Similarity=0.068 Sum_probs=151.3
Q ss_pred HHHHHHHHHhCCCC-ChHHHHHHHH----H-HHhCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 047067 145 MDDAWFLFTALESK-NEVSWNALIA----G-HARKSEGEKALRTFSEMLR-------EGFEPTHFSYSSVFTALASTG-- 209 (566)
Q Consensus 145 ~~~A~~~f~~~~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~ll~~~~~~~-- 209 (566)
...|.+.++...+. ++..-..+.. + +....+.+.|+..|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776654 4443333332 2 4466788999999988866 44 2234455556665533
Q ss_pred ---ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----HcCCHHHH
Q 047067 210 ---SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK-SGSIEDAEKVFNRLLKR-DVVSWNSMLTGCA----QHGLGKAT 280 (566)
Q Consensus 210 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A 280 (566)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...-+. .+.+.-.+...|. ...+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5667888888888887 4444443333322222 24577888888877543 3333333333332 23467888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh---hh----cCCHHHHHHH
Q 047067 281 VRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL---GR----AGLLDRALKF 353 (566)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A~~~ 353 (566)
..++.+.-+.| .|...--...+..+.. +.++.+.-.+..+...|.+.....-..+.+.. .. ..+.+.+..+
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 88888888887 4443333334444444 66666666665555555432222111122111 11 2245566666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--ChhHHHHHHHHHHhC
Q 047067 354 IREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYASA-G--RLNDAARARKMMKES 426 (566)
Q Consensus 354 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~ 426 (566)
+.+...+-+......|...|.. ..+.+.|...+.++.+.. ......|+.++-.. | .+..|.++++...+.
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 6666434445444545444332 235677777777766655 45566677666542 1 256777777777653
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.55 E-value=3.4 Score=34.99 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 376 HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
.++.++++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.38 E-value=15 Score=31.49 Aligned_cols=133 Identities=10% Similarity=0.006 Sum_probs=69.2
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 047067 78 IILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWN-VYVGSSLLDMYARF-DQMDDAWFLFTAL 155 (566)
Q Consensus 78 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~li~~y~~~-g~~~~A~~~f~~~ 155 (566)
++.++.+.+.+++|+...+..+++.+.+.+... . ...+++.++-+| ..+...|++.-.+. .-..-|.+++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~-~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS-Q----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-H----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 344555566677777777777777777776655 2 222333343333 33333333222111 0123344444444
Q ss_pred CCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067 156 ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK 223 (566)
Q Consensus 156 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 223 (566)
. ..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++....+
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 23455667778888888888887665221 112223456666666665555555554443
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.37 E-value=6 Score=33.53 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=22.0
Q ss_pred HccCCHHHHHHHHHhHHhhCCCccHH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEPEEA-HYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
.+.++.+++..++..+... .|... .-..-...+.+.|++.+|..+|+++
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455555555555443332 22211 1111223344556666666666555
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.27 E-value=16 Score=31.45 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=62.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 047067 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR 259 (566)
Q Consensus 180 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 259 (566)
++.++.+...+++|+...+..+++.+.+.|.+..-. +++..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 345555666677777777777777777777655433 3334444333332222221111 1112222222222222
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
=...+..++..+...|++-+|+.+.+..... +...-..++.+-.+.++...-..++
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 2223455666677777777777777664221 1112233455555555444433333
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.12 E-value=13 Score=32.49 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067 233 GNTLVDMYAKSGSIEDAEKVFNRLLKRD------VVSWNSMLTGCAQHGLGKATVRWFEKM 287 (566)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (566)
+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555555555555555555543321 123334444444444555444444443
No 294
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.03 E-value=14 Score=30.67 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLLKR------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 307 (566)
..+.|++++|.+.|+.+..+ ...+--.++.+|.+.+++++|+..+++.++....-..+-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34556677777766666432 223444566677777777777777777766432211234444444443
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.01 E-value=3.4 Score=34.36 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36667777777777777777777666667777777777777777777766554
No 296
>PRK10941 hypothetical protein; Provisional
Probab=87.94 E-value=4.3 Score=38.09 Aligned_cols=63 Identities=24% Similarity=0.182 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
..+.|-.++.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...++-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 446666789999999999999999999999999888889999999999999999888887643
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.84 E-value=22 Score=32.69 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 369 LLGACRMHKNVELGAYAAERIFELDPHDSG---PHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+..-|.+.|.+..|..-++++++--|+.+. .+..+.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345688899999999999999987655443 5667888999999999999887766543
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.84 E-value=11 Score=32.36 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=25.0
Q ss_pred hhcCCHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 342 GRAGLLDRALKFIREMPI--EP-TAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
...|.+++.....+.+.. .| ....-.+|.-+--+.|++..|...|.++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555555555511 12 122334444455556666666666666554
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=46 Score=35.99 Aligned_cols=75 Identities=11% Similarity=0.188 Sum_probs=47.4
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCC
Q 047067 337 FVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFE-LDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 412 (566)
++..+.+..+.+++..+.+..+ +-++..|..++..+.+.+.++.-.+...++++ +..++.-.-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 4555667778888888888775 33778888888888888877666665555553 222222233445555655543
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=5.6 Score=37.38 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=70.9
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067 225 GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-R--------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN 295 (566)
Q Consensus 225 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (566)
|.+....+...++..-....++++++..+-++.. + ..++|-.++. .=++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4455555666677766667788888888777642 2 2334433333 3357799999999899999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHH-HhHHh
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYF-ALMKK 324 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~ 324 (566)
..|+..++..+.+.+++.+|.++. .+|.+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888 44443
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.81 E-value=11 Score=32.90 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHhHHhh---CCCccH----H
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ--VTFLCVLTACSHAGLLDEGQGYFALMKKH---GVEPEE----A 332 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~p~~----~ 332 (566)
..+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.......... +-+++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35667888888889999999998888886555543 35667777788888888887776443332 222222 2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 333 HYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
+|..|. +...+++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 233322 23467888888887666
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.51 E-value=1.8 Score=25.36 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777777777777777777766
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.28 E-value=1.2 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 047067 16 AHILGSAFKNDIAMQNTILNAYAKCGCLDEAR 47 (566)
Q Consensus 16 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 47 (566)
.+.++.. +.++.+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445543 556777777777777777777775
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.91 E-value=27 Score=31.67 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=37.6
Q ss_pred HhhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--HH-hcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 340 LLGRAGLLDRALKFIREM---PIEPTAAVWGA---LLGA--CR-MHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~~--~~-~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
.-+..+++.+|.++|++. .+..+..-|.. ++.+ |. -..+.-.+...+++..+++|.-..+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 345678888999998877 22333333321 2222 32 3367777888888888999975443
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.87 E-value=37 Score=33.29 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDP----HDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
...+|..+...+++.|+++.|...+.++.+..+ ..+.....-+......|+..+|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999988652 2455667778889999999999999988877433
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=4.3 Score=38.13 Aligned_cols=98 Identities=18% Similarity=0.327 Sum_probs=72.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047067 124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK---------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT 194 (566)
Q Consensus 124 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 194 (566)
|.+....+...++..-....+++++...+-++... ...+|-.++. .-++++++.++..=.+-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 44555556666666666677888888777665531 2334433333 3467899999888888999999
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 047067 195 HFSYSSVFTALASTGSLEQGKWVHAHVIKSG 225 (566)
Q Consensus 195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 225 (566)
.+|+..+++.+.+.+++..|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888777654
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.34 E-value=2.9 Score=28.00 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 369 LLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
+.-++.+.|+++.|.+..+.+++++|+|..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4567889999999999999999999998633
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.91 E-value=50 Score=34.99 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=82.7
Q ss_pred HHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 272 AQHGLGKATVRWFEKMLR-------NGIAPNQVTFLCVLTACSHAG-----LLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
....+.+.|+.+|+.+.+ .| +......+..+|.+.. +.+.|..++.+..+.| .|+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 344566666666666655 44 2224445555555532 5566777776655555 334433322222
Q ss_pred Hhhh-cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCh
Q 047067 340 LLGR-AGLLDRALKFIREMPI--EPTAAVWGALLGAC--RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA-GRL 413 (566)
Q Consensus 340 ~~~~-~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~ 413 (566)
..+. -.+...|.++|..... .++...+-++.... ....+.+.|...++++-+.++. .+...+...+.-. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccccc
Confidence 2222 2456778888877621 22333332222211 1334778888888888887732 3334444433322 788
Q ss_pred hHHHHHHHHHHhCCCcc
Q 047067 414 NDAARARKMMKESGVKK 430 (566)
Q Consensus 414 ~~a~~~~~~m~~~g~~~ 430 (566)
+.+.-.+..+.+.|..-
T Consensus 414 ~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEV 430 (552)
T ss_pred cHHHHHHHHHHHhhhhH
Confidence 88888877777776643
No 309
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.18 E-value=15 Score=28.28 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 047067 8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRL 87 (566)
Q Consensus 8 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 87 (566)
.++|-.|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|-..++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45666666666554311 222222223456678999999999999999999999888764 556666677777777776
Q ss_pred CCCCChhHHHH
Q 047067 88 GLKPNQFTLSS 98 (566)
Q Consensus 88 g~~p~~~t~~~ 98 (566)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.18 E-value=2 Score=26.63 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 398 GPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3677888999999999999999888865
No 311
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.11 E-value=3.9 Score=35.25 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC----hhHHHHHHHHHH
Q 047067 379 VELGAYAAERIFELDPHDSGPHILLANIYASAGR----LNDAARARKMMK 424 (566)
Q Consensus 379 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 424 (566)
+++|+.-+++++.++|+...++..++++|...+. ..+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4667777888888999999999999999987654 334445555543
No 312
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.94 E-value=7.6 Score=25.98 Aligned_cols=51 Identities=22% Similarity=0.130 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCc
Q 047067 399 PHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY 475 (566)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 475 (566)
....++.++.+.|++++|.+..+.+.+.. |...++......+.++|++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccCC
Confidence 34568889999999999999999998732 3344455555567777777663
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.68 E-value=1.6 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=18.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH
Q 047067 398 GPHILLANIYASAGRLNDAARARK 421 (566)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~ 421 (566)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677888888888888887765
No 314
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.29 E-value=53 Score=32.96 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 188 (566)
=+.++..++....+.++..+|-+.+.-+..
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 355778888888888888888887766654
No 315
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=3.4 Score=37.20 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 345 GLLDRALKFIREM-PIEPTAA-VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 345 g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
.+++.|...+.+. -+.|.+. -|..=+-++.+..+++.+.+--++++++.|+....+..++........+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4455555555444 5677774 4555666777788899999999999999999988999999999999999999999888
Q ss_pred HHh
Q 047067 423 MKE 425 (566)
Q Consensus 423 m~~ 425 (566)
..+
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 854
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.47 E-value=11 Score=31.38 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=9.0
Q ss_pred hhhcCCHHHHHHHHHhC
Q 047067 341 LGRAGLLDRALKFIREM 357 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~ 357 (566)
+.+.|++++|..+|++.
T Consensus 54 ~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 54 LIARGNYDEAARILREL 70 (153)
T ss_pred HHHcCCHHHHHHHHHhh
Confidence 34555555555555555
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.04 E-value=3.2 Score=24.31 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 398 GPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+|..++.+|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688899999999999999999998875
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.02 E-value=1.4e+02 Score=36.85 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
..+|-.....++..|+++.|....-.+.+..+ +..+.-.+......|+...|..++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 36898899999999999999998888887774 35888899999999999999999999886543
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.59 E-value=25 Score=36.39 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKML 288 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (566)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344455444443321 234445555555555555555555555443
No 320
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.40 E-value=21 Score=35.26 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=50.2
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 047067 362 TAAVWGAL---LGACRMHKNVELGAYAAERIFELDPH-DSGPHILLANIYA-SAGRLNDAARARKMMKE 425 (566)
Q Consensus 362 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 425 (566)
|...|.++ +....+.|-+..|.+..+-++.++|. ||..-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34445444 46678899999999999999999999 8887778888886 77888877777776554
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.38 E-value=3.8 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777777654
No 322
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.33 E-value=50 Score=31.31 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.2
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 047067 404 ANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~m~ 424 (566)
+..+.+.++|++|.+.++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445678899999999888654
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.10 E-value=43 Score=30.42 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHh
Q 047067 242 KSGSIEDAEKVFNR 255 (566)
Q Consensus 242 ~~g~~~~A~~~~~~ 255 (566)
-.+++++|.++|.+
T Consensus 26 g~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 26 GSNKYEEAAELYER 39 (288)
T ss_pred CCcchHHHHHHHHH
Confidence 33456666666554
No 324
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.78 E-value=24 Score=27.20 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067 112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGF 191 (566)
Q Consensus 112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 191 (566)
++..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|...|
T Consensus 23 EA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg- 98 (115)
T TIGR02508 23 EANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG- 98 (115)
T ss_pred HHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-
Confidence 344444444433311 33333344556778899999999999988899999888765 46677777777777777766
Q ss_pred CCCHHHHH
Q 047067 192 EPTHFSYS 199 (566)
Q Consensus 192 ~pd~~t~~ 199 (566)
.|...+|.
T Consensus 99 ~p~lq~Fa 106 (115)
T TIGR02508 99 DPRLQTFV 106 (115)
T ss_pred CHHHHHHH
Confidence 45544443
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.72 E-value=0.76 Score=38.56 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=43.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 047067 201 VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKAT 280 (566)
Q Consensus 201 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (566)
+++.+.+.+.++....+++.+.+.+...+..+.+.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555666666666666666655555666677777777777655555555552211 2223344444444444444
Q ss_pred HHHHHH
Q 047067 281 VRWFEK 286 (566)
Q Consensus 281 ~~~~~~ 286 (566)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444433
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.55 E-value=3.8 Score=22.81 Aligned_cols=29 Identities=24% Similarity=0.127 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067 366 WGALLGACRMHKNVELGAYAAERIFELDP 394 (566)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 394 (566)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555444
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.50 E-value=15 Score=27.99 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
+.-++.+-++.+....+.|++....+.++||.+.+++..|..+|+-++.. ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44466777777777788899999999999999999999999999765532 2224446666553
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.23 E-value=6.6 Score=36.54 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
+-....|...|.+.+|.++.+++++++|-+...+..|.+.|+..|+--++.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34446789999999999999999999999999999999999999998888888888754
No 329
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.11 E-value=1.6e+02 Score=36.36 Aligned_cols=354 Identities=14% Similarity=0.053 Sum_probs=163.6
Q ss_pred HHHHHHHhcCChhHHHHHHccC----CCCCc--chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc
Q 047067 32 TILNAYAKCGCLDEARKLFDEM----PVKDM--VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA 105 (566)
Q Consensus 32 ~li~~~~~~g~~~~A~~~f~~~----~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 105 (566)
.|..+--+|+.+..|.-.|+.- .+.+. .-|..+...|+.-++++....+...-.. .|+ +..-|.-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3444555677777777777762 21111 1233344467777777766665553111 122 2222333345
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHH-HHHHHhCCChhHHHH
Q 047067 106 GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK---NEVSWNAL-IAGHARKSEGEKALR 181 (566)
Q Consensus 106 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~ 181 (566)
.|++. .+...++.+.+.+ ++....++.++..-...|.++......+..... ....|+++ +.+-.+.++++....
T Consensus 1462 ~g~~~-da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWA-DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHH-HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 56666 6666666666553 222444554444444455666665555544432 22233332 233355666665554
Q ss_pred HHHHHHHCCCCCCHHHHHH--HHHHHhccCChHH--HHHHHHHH--------HHhCCC-CcHhHHHHHHHHHHhcCCHHH
Q 047067 182 TFSEMLREGFEPTHFSYSS--VFTALASTGSLEQ--GKWVHAHV--------IKSGGQ-LVAFVGNTLVDMYAKSGSIED 248 (566)
Q Consensus 182 ~~~~m~~~g~~pd~~t~~~--ll~~~~~~~~~~~--a~~~~~~~--------~~~~~~-~~~~~~~~li~~~~~~g~~~~ 248 (566)
... .. +..+|.. +.....+...-+. -....+.+ ...+.. .-...|..++....-+.- +.
T Consensus 1540 ~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~ 1611 (2382)
T KOG0890|consen 1540 YLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-EN 1611 (2382)
T ss_pred hhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HH
Confidence 433 11 1111111 1111111111000 00111111 111111 112344445444433322 22
Q ss_pred HHHHHHhcCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCC-----HHHHHHHHHHHHccCCHHHHHH
Q 047067 249 AEKVFNRLLKR-----DVVSWNSMLTGCAQHGLGKATVRWFEKM-LRNGIAPN-----QVTFLCVLTACSHAGLLDEGQG 317 (566)
Q Consensus 249 A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~ 317 (566)
..+........ +..-|-.-+.--....+..+-+-.+++. ......|+ ..+|....+.+...|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 22222222111 2223433333222222222322223322 22212222 4578888888888999999998
Q ss_pred HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----------CCCCCHHHHHHHHHH--------H---Hhc
Q 047067 318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----------PIEPTAAVWGALLGA--------C---RMH 376 (566)
Q Consensus 318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~~~~~~~ll~~--------~---~~~ 376 (566)
.+-...+.+ .| ..+--....+...|+...|+.++++. +.++.+..-|.++.. | ..+
T Consensus 1692 all~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n 1768 (2382)
T KOG0890|consen 1692 ALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN 1768 (2382)
T ss_pred HHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc
Confidence 883334333 33 34556677888999999999988765 112223333333322 1 122
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 377 KNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
-..+..++.|..+.+..|.....|..++
T Consensus 1769 ~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1769 FESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 3345667888888888886555555555
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.09 E-value=3.2 Score=23.99 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=10.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC
Q 047067 372 ACRMHKNVELGAYAAERIFELDP 394 (566)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~~~~p 394 (566)
++...|+.++|.+.++++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33344444444444444444444
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.04 E-value=2.7 Score=24.34 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 399 PHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999999764
No 332
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=50 Score=30.21 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 047067 399 PHILLANIYASAGRLNDAARARK 421 (566)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~ 421 (566)
.++..+-.|....++..|.+.++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhc
Confidence 34555555555555555555544
No 333
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.39 E-value=24 Score=30.58 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=38.9
Q ss_pred CCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 358 PIEPTA-AVWGALLGACRMHK-----------NVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 358 ~~~p~~-~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.++|+. .++..+.+++..++ .++.|...|+++.+.+|++. .|..-+.+.. .|-+++.++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHH
Confidence 456765 45555666655443 25677777888888999986 5555444443 57778888877
Q ss_pred CCCcc
Q 047067 426 SGVKK 430 (566)
Q Consensus 426 ~g~~~ 430 (566)
++...
T Consensus 136 ~~~~~ 140 (186)
T PF06552_consen 136 QGLGQ 140 (186)
T ss_dssp SSS--
T ss_pred HHhhh
Confidence 76643
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.19 E-value=44 Score=29.42 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHH-----HHHHHhhhcCCHHHHH
Q 047067 279 ATVRWFEKMLRNGIAPNQVTFL--CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV-----TFVDLLGRAGLLDRAL 351 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~ 351 (566)
+......++....-+...-++. .+...+...+++++|...++..... |....+. .|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445555555532121112222 2234566678888888777544432 2222222 3455677888999999
Q ss_pred HHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 352 KFIREMPIEPTAAV--WGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 352 ~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
..++... .++-.. -..-...+...|+-++|...|++.++.++++
T Consensus 147 ~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9888763 222222 2223356788889999999999988887543
No 335
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.68 E-value=34 Score=31.21 Aligned_cols=56 Identities=11% Similarity=-0.062 Sum_probs=48.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
.++...|++-++++....++..+|.|..+|..-+.+.+..=+.++|..-|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 55567799999999999999999999999999998888888888888888888763
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.59 E-value=13 Score=28.65 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
+...-++.+....+.|++....+.+.||.+.+++..|.++|+.++.. ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 56666677777778899999999999999999999999999665543 2333336766654
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.58 E-value=13 Score=32.86 Aligned_cols=75 Identities=21% Similarity=0.171 Sum_probs=47.6
Q ss_pred hhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCChhH
Q 047067 342 GRAGLLDRALKFIREMPIEP--TAAVWGALLGACRMHKNVELGAYAAERIFELDP----HDSGPHILLANIYASAGRLND 415 (566)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~ 415 (566)
.+.|+ ++|.+.|-.+.-.| +....-..+..|-...|.+.++.++-+++++.+ -|+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 45666666662233 223333334444456778888888888887642 256788888899988888887
Q ss_pred HH
Q 047067 416 AA 417 (566)
Q Consensus 416 a~ 417 (566)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 63
No 338
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.61 E-value=4.7 Score=40.25 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=65.0
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEPTAAVWGAL-LGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA 416 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 416 (566)
.-+.+.+.++.|..++.++ .++|+-..|-+. ..++.+.+++..|+.-+.++++++|.....|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3345566777777777766 667765544333 36677888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 047067 417 ARARKMMKE 425 (566)
Q Consensus 417 ~~~~~~m~~ 425 (566)
...|+.-..
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888877654
No 339
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.61 E-value=14 Score=30.16 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHh-cCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 378 NVELGAYAAERIFE-LDPHDS-GPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 378 ~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
+..+++.+++.+.+ -.|... .....|+-.+.+.|+++.++++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 45667777777775 334322 2344566677777777777777777765
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.39 E-value=22 Score=31.45 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHHH
Q 047067 177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS---GGQLVAFVGNTLVDMYAKSGSIEDA 249 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 249 (566)
++|++.|-.+...+.--++.....+. .+-...+.+++.+++-.+++. +-.+|+.++.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555444332322222222 222344555555555555442 1245556666666666666666554
No 341
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.12 E-value=1.8 Score=41.05 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 047067 344 AGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK 421 (566)
Q Consensus 344 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 421 (566)
.|.+++|.+.|... ++.|.. ..+.--.+++...++...|++-+..+++++|+...-|-.-..+....|.|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45667777766655 444433 3444445566777777778888888888888877777777777777788888888888
Q ss_pred HHHhCCCccCC
Q 047067 422 MMKESGVKKEP 432 (566)
Q Consensus 422 ~m~~~g~~~~~ 432 (566)
...+.++.+..
T Consensus 207 ~a~kld~dE~~ 217 (377)
T KOG1308|consen 207 LACKLDYDEAN 217 (377)
T ss_pred HHHhccccHHH
Confidence 88777765443
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.36 E-value=38 Score=36.38 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCCh-------hHHHHHHHHHHHCCCCCCHH
Q 047067 133 SSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEG-------EKALRTFSEMLREGFEPTHF 196 (566)
Q Consensus 133 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~pd~~ 196 (566)
=++|-.+.|||++++|.++..+... +....+-..+..|..+.+. ++...-|++........|++
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3577788999999999999944332 3445666777777665332 34555566665543323543
No 343
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.03 E-value=32 Score=28.69 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCC---------CCCcchHHHHHHHHHhCCC-ccHHHHHHHHHHHCCCCCChhHHHH
Q 047067 29 MQNTILNAYAKCGCLDEARKLFDEMP---------VKDMVTWTALISGYSQNDQ-PENAIILFSQMLRLGLKPNQFTLSS 98 (566)
Q Consensus 29 ~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ 98 (566)
..|.++.-.+.-+++.....+++.+. ..+-.+|++++.+.++..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35666666666677777777766654 2355567777777766555 3345677777777677777777777
Q ss_pred HHHHHccCCC
Q 047067 99 VLKASGAGAT 108 (566)
Q Consensus 99 ll~a~~~~~~ 108 (566)
++++|.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 7777766533
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.53 E-value=4.9 Score=22.08 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCChhHHHHHHc
Q 047067 31 NTILNAYAKCGCLDEARKLFD 51 (566)
Q Consensus 31 ~~li~~~~~~g~~~~A~~~f~ 51 (566)
..|...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666654
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.44 E-value=21 Score=27.57 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=31.6
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067 356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILL 403 (566)
Q Consensus 356 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 403 (566)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|..+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 346678899999999999999999999999988775443333355444
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.85 E-value=23 Score=27.04 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047067 177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVI 222 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 222 (566)
-++.+-++.+....+.|++....+.++||.+.+++..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455566666666788888888888888888888888888888765
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.77 E-value=1.1e+02 Score=31.48 Aligned_cols=172 Identities=11% Similarity=0.069 Sum_probs=88.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
|....-++++.+...-..+-.+.+..+|. ..+-..|-.++..|..+ ..++-..+|+++.+.. -|.+.+..-+.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 33444455555555555555555555553 23445566666667666 4566666777666642 2333333333333
Q ss_pred HccCCHHHHHHHHHhHHhhCCCc-----cHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEP-----EEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPTAAVWGALLGACRMHK 377 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g 377 (566)
...++.+.+..+|..+...=++. -.++|.-|+... ..+.+....+..++ +...-.+.+.-+-.-|....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 33366666666664444322210 122444443322 23444444444444 22223344445555667777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 378 NVELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 378 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
++++|++++..+++.+..|..+--.++.
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 7777777777777766555444433333
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.57 E-value=50 Score=33.29 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=53.2
Q ss_pred cCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067 274 HGLGKATVR-WFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALK 352 (566)
Q Consensus 274 ~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (566)
.|+.-.|-+ ++.-+....-.|+.+...+.| ..+.|.++.+.+.+..... -+.....+..+++....+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 444444433 333333333344444333333 3455666666655533221 122333445555555556666666665
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 353 FIREM-PIE-PTAAVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 353 ~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
+-+.| +-+ -+..+...-.......|-++++.-.+++++.+.|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 55555 101 12222222222334445555555555555555543
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.43 E-value=13 Score=33.11 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=42.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 335 VTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
+.-+..+.+.+.+++|+...++- .-+| |...-..++..++..|++++|..-++-.-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 33455667777788877776544 3355 444556677778888888888877777777777654
No 350
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.80 E-value=47 Score=31.67 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=54.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH-HHHHHHHHHhh
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLRNGIAPNQ---VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE-AHYVTFVDLLG 342 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~ 342 (566)
|..+-.+.|+..+|.+.|+.+.+. .|-. ..-..|+.+|.....+.....++..--+...+.+. ..|++ ++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa---ALL 355 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA---ALL 355 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH---HHH
Confidence 334445567777777777776553 2211 12234566666655555555555332222222221 12221 111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 343 RAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
++..+-++ +.||..+-..|-.+ -..|.+...++++.+|.-|.
T Consensus 356 ------K~RAVa~k--Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 356 ------KTRAVSEK--FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred ------HHHHHHhh--cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcH
Confidence 12222222 24555443333222 23567788888888887664
No 351
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.59 E-value=3.4 Score=34.55 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHH
Q 047067 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQM 84 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 84 (566)
.+.+.......+.+++.+...++...+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|.-+|.++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 345555666777777766667788889999999988888888888874332 33345555566666666666666554
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.38 E-value=1.4e+02 Score=32.29 Aligned_cols=188 Identities=11% Similarity=-0.048 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067 231 FVGNTLVDMYAKSGSIEDAEKVFNRLLKR--D-VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307 (566)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 307 (566)
.+...-+....+.++++.+...|..|+.. + ..-.-=+..++...|+.++|...|+++.. . .+|-.++.+ .
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~ 385 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-Q 385 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-H
Confidence 33444455555777777777777777431 1 12222245555667777777777777633 1 123333321 1
Q ss_pred ccCCHHHHHHHHHhHHhhCCCccH-----HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047067 308 HAGLLDEGQGYFALMKKHGVEPEE-----AHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 382 (566)
+.|..-. +.. ...++.. ..-..-+..+...|...+|...+..+--..+......+.......|..+.+
T Consensus 386 ~Lg~~~~----~~~---~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 386 RLGEEYP----LKI---DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred HcCCCCC----CCC---CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHH
Confidence 1221100 000 0000000 001123456677888889888887762234555556666666788888888
Q ss_pred HHHHHHHHhcC---CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 047067 383 AYAAERIFELD---PHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEP 432 (566)
Q Consensus 383 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 432 (566)
+....+....+ -.-|..|...+..+++.-..+.+.-.--...+.++.|..
T Consensus 459 i~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 459 VQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 87776543311 112335666666676666676665443444577776654
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.15 E-value=48 Score=34.47 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067 138 MYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV 217 (566)
Q Consensus 138 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 217 (566)
...+.|+++.|.++-.+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 344567777776665443 3566788888888888888888887776543 44556666666666655555
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067 218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNR 255 (566)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (566)
-....+.|. . |....+|...|+++++.+++.+
T Consensus 715 a~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 444455442 1 2233345666777776666543
No 354
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.77 E-value=1.9e+02 Score=32.98 Aligned_cols=257 Identities=10% Similarity=-0.066 Sum_probs=137.7
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 047067 148 AWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQ 227 (566)
Q Consensus 148 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (566)
...+...+.++|...--.-+..+.+.+. .++...+..+.. .+|...-...+.++...+........+..+++.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~--- 695 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS--- 695 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---
Confidence 3455566667777777777777777765 445555555553 234444444555554443211112233333332
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 307 (566)
+|..+-...++++...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHH
Confidence 4555556666666554321 12344555667777666667777776654432 222222 345555555666666
Q ss_pred ccCCHHH-HHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047067 308 HAGLLDE-GQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAA 386 (566)
Q Consensus 308 ~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (566)
..+..+. +...+..+.. .++..+-...+..+++.|..+.+...+..+-..+|..+-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 6654432 2333322222 456777778888888888776554444333225666555666667766665 3455555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 387 ERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 387 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
..+++ +| +...-...+.++.+.+.-..+...+....+
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55553 22 234555566666664333456666655554
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.28 E-value=20 Score=34.22 Aligned_cols=115 Identities=13% Similarity=0.057 Sum_probs=60.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLL--KR-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
.+-|.+.|.+++|+..|..-. .| |.+.+..-..+|.+...+..|..=....+... +.-...|..-..+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 456788888888888887653 33 77777777778887777776665544444321 000112333333333345555
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
+|.+-.+.... +.|+. +-|-..|.+...+.++.-+...-
T Consensus 183 EAKkD~E~vL~--LEP~~---~ELkK~~a~i~Sl~E~~I~~KsT 221 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPKN---IELKKSLARINSLRERKIATKST 221 (536)
T ss_pred HHHHhHHHHHh--hCccc---HHHHHHHHHhcchHhhhHHhhcC
Confidence 55554443333 34441 22334455555555554444433
No 356
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.73 E-value=1.2e+02 Score=30.17 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh-hcCCHHHHHHHHHhC
Q 047067 304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG-RAGLLDRALKFIREM 357 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 357 (566)
..+.+.|-+..|.++.+.+......-|......+|+.|+ ++++++--.++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 345556666666666665555443334444445556554 556666555555543
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.21 E-value=1.8e+02 Score=32.12 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=107.4
Q ss_pred HHhcCCHHHHHHHHHhc----CCCCh-------hHHHHHHHH-HHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRL----LKRDV-------VSWNSMLTG-CAQHGLGKATVRWFEKMLRN----GIAPNQVTFLCVL 303 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~----~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll 303 (566)
.....++++|..++.+. ..++. ..|+++-.. ....|++++|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44567888888888765 23221 256665433 34568889998888877663 1223445566666
Q ss_pred HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH-----HHhhhcCCHHHH--HHHHHhC-----CCCC----CHHHHH
Q 047067 304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV-----DLLGRAGLLDRA--LKFIREM-----PIEP----TAAVWG 367 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A--~~~~~~~-----~~~p----~~~~~~ 367 (566)
.+..-.|++++|..+.....+..-.-+..++..++ ..+...|....| ...|... +-+| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 67777889999888774444332223333333222 234556633332 2222222 1122 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 047067 368 ALLGACRMHKNVELGAYAAERIFEL----DPHDSG---PHILLANIYASAGRLNDAARARKMMKESGVKKEPACSW 436 (566)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 436 (566)
.++.++.+ .+.+..-....++. .|.... .+..|+..+...|+.++|......+......+.+.+.|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 44555443 44444444444432 233221 22368888889999999999999988765544444444
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.67 E-value=29 Score=34.88 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=79.3
Q ss_pred HHHhcCCHHHHH-HHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047067 239 MYAKSGSIEDAE-KVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEG 315 (566)
Q Consensus 239 ~~~~~g~~~~A~-~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 315 (566)
--...|++..|. ++|.-+. +.+++.-......+...|+++.+...+...... +.....+..+++...-..|++++|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 334467766654 4444442 123333333334456778888888887765543 444567788888888888888888
Q ss_pred HHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 047067 316 QGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE-PTAAVWGALLGA 372 (566)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 372 (566)
...-.+|....++. .++.......--..|-++++...+++. .+. |...-|..++..
T Consensus 377 ~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 377 LSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 88887777655542 222222222234557788888888877 333 444566666654
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.19 E-value=16 Score=27.65 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 383 AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
...+++.++.+|+|......++..+...|++++|...+-.+.++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345666777888888888888888999999999988888877643
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.81 E-value=78 Score=28.07 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
-++.+.+.++.|.+-..+. .+.|.. .....-..+|.+...+++|+.-|+++++.+|...
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 4455666666665555444 344432 2222223457777889999999999999999764
No 361
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.53 E-value=1.1e+02 Score=30.64 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHhHHh
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQV--TFLCVLTACS--HAGLLDEGQGYFALMKK 324 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 324 (566)
.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3678888888888888876 555544 3444444443 35677788888855444
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.22 E-value=14 Score=38.06 Aligned_cols=70 Identities=21% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 337 FVDLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
|...+.+.|...+|..++.+. .+ ...+.++-.+.+++....+++.|++.++++++++|+++..-..|..+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 444555555555666555443 21 22334555566666666666777777777777666666555554433
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.76 E-value=22 Score=36.70 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHccCC--HHHHHHHHHhHHhhCCCccHHHHHHHHHHhh-hcCCHHHHHHHHHhC-CCCCC--HHHH
Q 047067 293 APNQVTFLCVLTACSHAGL--LDEGQGYFALMKKHGVEPEEAHYVTFVDLLG-RAGLLDRALKFIREM-PIEPT--AAVW 366 (566)
Q Consensus 293 ~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~-~~~p~--~~~~ 366 (566)
-|+..|.-+++.-....-- -+-|-.++-.|. ..+.|--...| +...|. -.|+...|...+... ...|. .+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 4566666555544333222 222333333332 22333222222 233444 468999999988776 33442 2445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
..|.+.....|-...|-.++.+.+.+....|-++..++++|....+.+.|.+.|+...+..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 5666777777778889999999999888888899999999999999999999999887643
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.53 E-value=1.4e+02 Score=30.04 Aligned_cols=148 Identities=11% Similarity=0.017 Sum_probs=63.0
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC----hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccC
Q 047067 136 LDMYARFDQMDDAWFLFTALESKN----EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS--YSSVFTALASTG 209 (566)
Q Consensus 136 i~~y~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~~~~~~~ 209 (566)
+...++.|+.+.+..+++.-...+ ..-++.+ ...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 344555666666666665432211 1111222 222334443 34444555565544321 112333444555
Q ss_pred ChHHHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH---HHHHHHHHHHcCCHHHHHHHH
Q 047067 210 SLEQGKWVHAHVIKSGGQLVAF--VGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVS---WNSMLTGCAQHGLGKATVRWF 284 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~ 284 (566)
+.+.+..+ ++.|..++.. ...+.+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.
T Consensus 147 ~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 55544333 3344322211 11223334455667666655555443332211 123333334455543 44
Q ss_pred HHHHHcCCCCCH
Q 047067 285 EKMLRNGIAPNQ 296 (566)
Q Consensus 285 ~~m~~~g~~p~~ 296 (566)
+.+.+.|..|+.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 455556666653
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.23 E-value=64 Score=30.22 Aligned_cols=88 Identities=10% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh---
Q 047067 268 LTGCAQHGLGKATVRWFEKMLRN--GIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG--- 342 (566)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--- 342 (566)
|++++..+++.+++...-+--+. .++|...- .-|-.|++.+.+..+.++-..-.+..-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 66777777787777655443331 13333333 333356777777777766633332221223334666665554
Q ss_pred --hcCCHHHHHHHHHhC
Q 047067 343 --RAGLLDRALKFIREM 357 (566)
Q Consensus 343 --~~g~~~~A~~~~~~~ 357 (566)
-.|.+++|++++..-
T Consensus 168 LlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVGS 184 (309)
T ss_pred HhccccHHHHHHHHhcC
Confidence 468888888887443
No 366
>PRK10941 hypothetical protein; Provisional
Probab=66.73 E-value=47 Score=31.23 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=53.8
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
.+.+-..|.+.++++.|+.+.+.+ .+.| |+.-|.--.-.|.+.|....|..-++..++.-|+++.+-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 345667788999999999999888 5556 445677677778999999999999999999999988553
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.48 E-value=10 Score=24.17 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 401 ILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
..|+.+|...|+.+.|+++++.....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999988644
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.43 E-value=30 Score=30.99 Aligned_cols=74 Identities=7% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC--CCccHHHHHHHHH
Q 047067 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG--VEPEEAHYVTFVD 339 (566)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~ 339 (566)
.+.-++.+.+.+...+|+...++-++. +| |..+-..++..++-.|++++|..-++...... ..+....|..+|+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 445566777777788888877776664 33 44555566677777888888776665443321 2233445555554
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.26 E-value=44 Score=30.20 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--CC----CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 366 WGALLGACRMHKNVE-------LGAYAAERIFELD--PH----DSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 366 ~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
+--+...|+..|+.+ .|...|+++.+.+ |. .......++..+.+.|++++|.+.|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 333444466666644 4455555555433 22 234566788999999999999999999987543
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.83 E-value=18 Score=23.15 Aligned_cols=24 Identities=8% Similarity=0.165 Sum_probs=14.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLRN 290 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~ 290 (566)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.26 E-value=11 Score=30.78 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=25.6
Q ss_pred hCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 047067 70 QNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS 103 (566)
Q Consensus 70 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 103 (566)
..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999985 77777654
No 372
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.97 E-value=1.8e+02 Score=29.51 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHH
Q 047067 192 EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL---LKRDVVSWNSML 268 (566)
Q Consensus 192 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 268 (566)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555454433 6777777777766654321111 12222222221 122223344455
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067 269 TGCAQ---HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310 (566)
Q Consensus 269 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 310 (566)
+++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 5789999999999999988887665555555544433
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.94 E-value=72 Score=25.00 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
..++|..|.+.+...+. ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45667777766666553 233333334455667788888855555556677777766544 467777777777777766
Q ss_pred cC
Q 047067 290 NG 291 (566)
Q Consensus 290 ~g 291 (566)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 374
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.77 E-value=2.3e+02 Score=30.68 Aligned_cols=183 Identities=16% Similarity=0.322 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccCChHHHHHHHHHHHHhC--CCC
Q 047067 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF----------SYSSVFTALASTGSLEQGKWVHAHVIKSG--GQL 228 (566)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~ 228 (566)
.+-..|+-.|-...+++..+++.+.++.. ||.. .|.-.++---+.|+-+.|..+.-.+++.. +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556677788888889899988888763 4332 23333333334566677766655555432 223
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT---FLCVLTA 305 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a 305 (566)
++|+-||++ |+.|- +-+.|...+..+.|+++|++.-+ +.|+..+ +..|+.+
T Consensus 279 ---------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 345556653 23321 11234455667788899998877 6776543 4444443
Q ss_pred HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047067 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYA 385 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 385 (566)
-.+. ++... ++..-| ..|-..++|.|.++.-.++++-. ..+.+-.-..++..|.++
T Consensus 333 aG~~--Fens~----Elq~Ig--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 333 AGEH--FENSL----ELQQIG--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhhh--ccchH----HHHHHH--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 3221 11111 111111 23445678888888777766432 234555667788899999
Q ss_pred HHHHHhcCCCC
Q 047067 386 AERIFELDPHD 396 (566)
Q Consensus 386 ~~~~~~~~p~~ 396 (566)
.+.|.++.|..
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999988764
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.92 E-value=16 Score=20.62 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 377 KNVELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677788888888877777666655443
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.57 E-value=1.5e+02 Score=28.11 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 233 GNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344567889999999999999888643 557788899999999998888888888754
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.17 E-value=1.4e+02 Score=27.88 Aligned_cols=36 Identities=8% Similarity=-0.121 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHH
Q 047067 127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVS 162 (566)
Q Consensus 127 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~ 162 (566)
-|+.....+...|.+.|++.+|+..|-.-..++...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~ 123 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFA 123 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHH
Confidence 367778888888889998888888775544443333
No 378
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.95 E-value=75 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 188 (566)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 379
>PRK12798 chemotaxis protein; Reviewed
Probab=60.80 E-value=1.9e+02 Score=29.02 Aligned_cols=179 Identities=16% Similarity=0.236 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHHhcCC----CChhHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHH
Q 047067 243 SGSIEDAEKVFNRLLK----RDVVSWNSMLTGC-AQHGLGKATVRWFEKMLRNGIAPN----QVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 313 (566)
.|+..+|.+.+..+.. +....+-+|+.+- ....+..+|+++|++..- .-|- +.....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888887743 3445666666653 445678899999998766 3443 334555555677889998
Q ss_pred HHHHHH-HhHHhhCCCccHHHHHH-HHHHhh---hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067 314 EGQGYF-ALMKKHGVEPEEAHYVT-FVDLLG---RAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAER 388 (566)
Q Consensus 314 ~a~~~~-~~~~~~~~~p~~~~~~~-li~~~~---~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (566)
++..+- +...++.-.|-...|.. ++..+. ..-..+.-..++..|.-.--...|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 887776 55565555554443332 223333 3334455566666663122346888888888999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHh-----cCChhHHHHHHHHHH
Q 047067 389 IFELDPHDSGPHILLANIYAS-----AGRLNDAARARKMMK 424 (566)
Q Consensus 389 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~ 424 (566)
+..+...+ ..-...+..|.. ....+++.+.+..+-
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 99886332 233444444533 234555655555443
No 380
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.12 E-value=47 Score=24.86 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHH
Q 047067 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAI 78 (566)
Q Consensus 11 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 78 (566)
..++++.++..|+- +....+.+-..-...|+.+.|+++++.++ +.+..|...++++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666632 22223332222235577888888888888 77777888888877777655443
No 381
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.52 E-value=2.3e+02 Score=29.68 Aligned_cols=335 Identities=10% Similarity=0.048 Sum_probs=180.1
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChhHHHHHHccCC------CCCcchHHHHHHHHHhCCCccH
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYA-KCGCLDEARKLFDEMP------VKDMVTWTALISGYSQNDQPEN 76 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~ 76 (566)
+.|.++.+..+|++-+. |++.++..|...+.... ..|+.+..++.|+... -.....|...|.--..++++..
T Consensus 91 klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 45677888888888886 46778888877776554 3577788888887654 2244568888887778888888
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHcc-----CCCchHHHHHHHHH--------------------HHHhCCCCchh-
Q 047067 77 AIILFSQMLRLGLKPNQFTLSSVLKASGA-----GATDDKFGRQVHAF--------------------CLKYGYDWNVY- 130 (566)
Q Consensus 77 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-----~~~~~~~~~~i~~~--------------------~~~~g~~~~~~- 130 (566)
...+|++.++....-=..-|.....-... ....+ ...++-.. +...+-+.+..
T Consensus 170 v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSID-ELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHH-HHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhh
Confidence 88888888764211000111111111100 01111 11111111 11111010000
Q ss_pred -HHHHH-------HHHHHhcCCHHHHHHHHHhCCC-----------CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067 131 -VGSSL-------LDMYARFDQMDDAWFLFTALES-----------KNEVSWNALIAGHARKSEGEKALRTFSEMLREGF 191 (566)
Q Consensus 131 -~~~~l-------i~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 191 (566)
..+.+ -.+|-+.-...+.+..|+.-.. .+..+|+.-+.--...|+.+.+.-+|+...-. +
T Consensus 249 ~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-c 327 (577)
T KOG1258|consen 249 EEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-C 327 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-H
Confidence 01111 1122222233333344443222 14668999999999999999999999887532 1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh-HHHH
Q 047067 192 EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLV--AFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RDVV-SWNS 266 (566)
Q Consensus 192 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ 266 (566)
..=...|-..+.-....|+.+.+..++....+.-.+.. ..+..+.+. -..|+++.|..+++.+.. |+.+ .-..
T Consensus 328 A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~pg~v~~~l~ 405 (577)
T KOG1258|consen 328 ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEYPGLVEVVLR 405 (577)
T ss_pred hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhCCchhhhHHH
Confidence 11112333334444445888888888877766554333 333333332 336799999999998843 3221 1111
Q ss_pred HHHHHHHcCCHHHHHH---HHHHHHHcCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH
Q 047067 267 MLTGCAQHGLGKATVR---WFEKMLRNGIAPNQVTFLCVLTA-----CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV 338 (566)
Q Consensus 267 li~~~~~~g~~~~A~~---~~~~m~~~g~~p~~~t~~~ll~a-----~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 338 (566)
-+....+.|..+.+.. ++..... | +-+..++..+.-- +.-.++.+.|..++..+.+. .+++...|..++
T Consensus 406 ~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 406 KINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELI 482 (577)
T ss_pred HHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHH
Confidence 2233455666666663 3332222 1 1122222222222 22357888899888665543 466777788888
Q ss_pred HHhhhcCC
Q 047067 339 DLLGRAGL 346 (566)
Q Consensus 339 ~~~~~~g~ 346 (566)
+.....+.
T Consensus 483 ~~~~~~~~ 490 (577)
T KOG1258|consen 483 RFELIQPS 490 (577)
T ss_pred HHHHhCCc
Confidence 77665553
No 382
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.34 E-value=3.3e+02 Score=31.05 Aligned_cols=254 Identities=11% Similarity=-0.041 Sum_probs=145.7
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCC
Q 047067 47 RKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYD 126 (566)
Q Consensus 47 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~ 126 (566)
..+.+.+..+|+..-..-+..+.+.+.. +++..+...+. .+|...-...+.++...+... .....+....+ .
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~-~~~~~L~~~L~---~ 695 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVL-PPAPALRDHLG---S 695 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhcc-CchHHHHHHhc---C
Confidence 3455555677777777777777777653 45555555554 244444445555554432211 11112222222 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047067 127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA 206 (566)
Q Consensus 127 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 206 (566)
+|..+....+..+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHH
Confidence 5667777777777654422 12345566667777766667777776655432 222222 356666666667777
Q ss_pred ccCChHH-HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 047067 207 STGSLEQ-GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE-KVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWF 284 (566)
Q Consensus 207 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 284 (566)
..+..+. +...+..+.+ .++..+-.+.+.++.+.|..+.+. .+...+.+++...-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 6665433 2334444433 456777788888888888766553 34445556676666667777777764 4677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHH
Q 047067 285 EKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK 323 (566)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 323 (566)
..+.+ .|+...-...+.++.+......+...+....
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 77765 4566666666677776543445666664433
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.08 E-value=1.1e+02 Score=28.68 Aligned_cols=57 Identities=7% Similarity=-0.122 Sum_probs=27.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067 167 IAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK 223 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 223 (566)
|.+++..++|.+++...-+--+.--+........-|-.|++.+.+..+.++-...++
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 566777777777766554433321111122223333344555555555544444443
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.79 E-value=47 Score=29.42 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 358 PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 358 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
...|++.++..++.++...|+.++|.+..+++..+-|.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44688888888888888888888888888888888883
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.60 E-value=35 Score=25.98 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=36.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 374 RMHKNVELGAYAAERIFELDPHD---------SGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+.|++..|.+.+.+........ ..+...++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677888877777776532111 12344577788899999999999988865
No 386
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.04 E-value=1.6e+02 Score=26.99 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 249 AEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 249 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
+..+|+-..+|.+.....|+..+.. +++++|.+.+.++-+.|..|... .+.+.+.+
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 4456666667777777777776654 56889999999988888887643 23344444
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.01 E-value=57 Score=27.17 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067 347 LDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 347 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|++..+-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356777777775 222333344556778999999999999999999998888888877776554
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.78 E-value=82 Score=23.65 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 047067 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 281 (566)
..|+.+.|.+++..++ +.+..|..++.++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577888888888888 77888888888888877765554
No 389
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.30 E-value=19 Score=32.47 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=45.6
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 340 LLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
+..+.|+.+.|.+++.+. ...| ....|-.+...--+.|+.+.|.+.+++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 455678888888888877 4455 456888888888888999999999999998887764
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.13 E-value=1.2e+02 Score=25.38 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047067 260 DVVSWNSMLTGCAQHGL-GKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA 309 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 309 (566)
+-.+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45567777777655444 234566777777766777777777777776654
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.64 E-value=83 Score=24.79 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
.-|..|+.-|..+|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588889999999999999999998877
No 392
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.00 E-value=1e+02 Score=24.21 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047067 112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREG 190 (566)
Q Consensus 112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 190 (566)
++..|.+.+...+- ....+--..+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++...|
T Consensus 24 EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 24 EANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 55666666655543 333444445556778888888855555566678888877655 47788888888887776655
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.98 E-value=1.2e+02 Score=30.69 Aligned_cols=66 Identities=6% Similarity=0.060 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCChhH--HHHHHHHHHhcCChhHHHHHHccCCCCCcc--hHHHHHHHHHhCCCccHHHH
Q 047067 14 VHAHILGSAFKNDIAM--QNTILNAYAKCGCLDEARKLFDEMPVKDMV--TWTALISGYSQNDQPENAII 79 (566)
Q Consensus 14 i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~ 79 (566)
+...+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 3444555565554322 333445555666666555555543322211 11123334445566544333
No 394
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=54.65 E-value=67 Score=32.31 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 358 PIEPTA--AVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 358 ~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
.++|.. .++++-++.+.+++++..|-.+.++++++.|...
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 555533 4677778888999999999999999999998653
No 395
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.19 E-value=2.8e+02 Score=28.66 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=102.8
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 238 (566)
|....-+++..+.++-.+.-...+..+|..-| -+...|..++..|... ..+.-..+++++++..+. |++....|.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44456678888888888888888999998855 4667788888888877 556677888888877643 4445566666
Q ss_pred HHHhcCCHHHHHHHHHhcCCC------Ch---hHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Q 047067 239 MYAKSGSIEDAEKVFNRLLKR------DV---VSWNSMLTGCAQHGLGKATVRWFEKMLR-NGIAPNQVTFLCVLTACSH 308 (566)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~ 308 (566)
.|-+ ++.+.+...|.++..+ +. ..|..++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6666 8888888888776322 11 2455554421 2344555555555544 2333334455555556666
Q ss_pred cCCHHHHHHHHHhHHhh
Q 047067 309 AGLLDEGQGYFALMKKH 325 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~ 325 (566)
..++.+|.+++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 77777777777555444
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.95 E-value=41 Score=24.64 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchH---HHHHHHHHhcCChhHHHHH
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPH---ILLANIYASAGRLNDAARA 419 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~a~~~ 419 (566)
...+.+.|+..++++++..++.+.-+ -.|..+|+..|++.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777776555444333 3455566666766666554
No 397
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.25 E-value=68 Score=20.86 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=22.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (566)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456667777777777777777766666665554
No 398
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.37 E-value=1.4e+02 Score=24.31 Aligned_cols=70 Identities=11% Similarity=0.236 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 047067 279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP 358 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (566)
+..+-+..+....+.|+......-++||.+.+++..|..+|+-++. ...+....|-.+++ +-.-++++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~-K~g~~k~~Y~y~v~---------elkpvl~ELG 136 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD-KCGAQKQVYPYYVK---------ELKPVLNELG 136 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-hcccHHHHHHHHHH---------HHHHHHHHhC
Confidence 4555566666777889999999999999999999999999976543 33444445666553 4445555554
No 399
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.22 E-value=3.4e+02 Score=28.50 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHhHHhhCCCcc-----------HHHHHHHHHHhhhcCCHHHHHHHHHhC----------CCCCC--
Q 047067 306 CSHAGLLDEGQGYFALMKKHGVEPE-----------EAHYVTFVDLLGRAGLLDRALKFIREM----------PIEPT-- 362 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~-- 362 (566)
+.+...++++...|......--+-+ +.+.-.+.+++-..|+.+.|.+++++. .+.|.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCChhHHHHHHHHHHhC
Q 047067 363 --------------AAVWGALLGACRMHKNVELGAYAAERIFELDPH-DSGPHILLANIYA-SAGRLNDAARARKMMKES 426 (566)
Q Consensus 363 --------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 426 (566)
-.+.-..+....+.|-+..|.+..+-++.++|. ||.....+++.|+ ++.+|.--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 047067 427 G 427 (566)
Q Consensus 427 g 427 (566)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.83 E-value=61 Score=23.80 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=25.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHH
Q 047067 273 QHGLGKATVRWFEKMLRNGIAPN--QVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
...+.++|+..|+..++.-..|. -.++..++.+++..|++.+...+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655432222 234555566666666666655543
No 401
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.40 E-value=53 Score=24.50 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHH
Q 047067 12 RIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENA 77 (566)
Q Consensus 12 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 77 (566)
..+++.+++.|+ .+....-...+..-+.+.|.++++.++.+...+|.....++-..|...-|
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346666666552 22222333334456677788888888888888888888777776655443
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.26 E-value=69 Score=24.37 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHhC------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067 343 RAGLLDRALKFIREM------PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 393 (566)
+.|++.+|.+.+.+. ...+. ....-.+.......|+.++|...+++++++-
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 556666665554443 11111 1223334455677899999999999988753
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.72 E-value=35 Score=32.30 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSV 201 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 201 (566)
-||..|..-.+.||+++|++++++.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678899999999999999999999998876555555443
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.09 E-value=76 Score=20.62 Aligned_cols=34 Identities=9% Similarity=0.192 Sum_probs=24.3
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHH
Q 047067 68 YSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLK 101 (566)
Q Consensus 68 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 101 (566)
..+.|-..++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466777777888888888887777776666654
No 405
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.05 E-value=1.4e+02 Score=24.06 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 047067 403 LANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~m 423 (566)
-+.++...|+.++|...|+..
T Consensus 106 ra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 106 RAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHH
Confidence 344566678888888777654
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.01 E-value=2.6e+02 Score=25.72 Aligned_cols=160 Identities=12% Similarity=0.107 Sum_probs=74.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHhHHhhC-CCccHHHHHHHHHHhhhc
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH-AGLLDEGQGYFALMKKHG-VEPEEAHYVTFVDLLGRA 344 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~ 344 (566)
++..+-+.|++++++..++++...+...+..--+.|-.+|-. .|....+++++....... -..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455667778888888888888877655555444444444422 334444555552222111 1111 1222222222211
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCHH-HHHHHHHHH----Hh--cC-----CHHHHHHHHHHHHh-----cCCCCC
Q 047067 345 ------GLLDRALKFIREM--PI--EPTAA-VWGALLGAC----RM--HK-----NVELGAYAAERIFE-----LDPHDS 397 (566)
Q Consensus 345 ------g~~~~A~~~~~~~--~~--~p~~~-~~~~ll~~~----~~--~g-----~~~~a~~~~~~~~~-----~~p~~~ 397 (566)
.--.+...+++.. |. .+... .|.-+-+-| +. .| -.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 0112344444443 11 11111 121111111 11 11 23677777777764 567776
Q ss_pred chHHHH---HH-HHHhcCChhHHHHHHHHHHhCC
Q 047067 398 GPHILL---AN-IYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 398 ~~~~~l---~~-~~~~~g~~~~a~~~~~~m~~~g 427 (566)
.-.... +. .|--.|+.++|.++-+...+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 433222 22 3456899999998887776543
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.91 E-value=49 Score=31.38 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL 303 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (566)
.-||..|..-.+.||+++|+.++++..+.|+.--..||..-+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788999999999999999999999998775555654443
No 408
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.83 E-value=22 Score=29.00 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=23.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 273 QHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
..|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345566889999999999999884 55666544
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.72 E-value=1.9e+02 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=19.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 370 LGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 370 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
+..|.+.|.+++|.+++++..+ +|++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 3557777888888888887777 666543
No 410
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.47 E-value=2.4e+02 Score=25.08 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=54.9
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHHcCCHH
Q 047067 203 TALASTGSLEQGKWVHAHVIKSGGQLV--AFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVS--WNSMLTGCAQHGLGK 278 (566)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 278 (566)
..+...++++.|...++..+...-..+ ..+--.|.......|.+++|..+++....++-.+ ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 445666777777766666554321111 1112234556677788888888888776664333 333445678888888
Q ss_pred HHHHHHHHHHHcC
Q 047067 279 ATVRWFEKMLRNG 291 (566)
Q Consensus 279 ~A~~~~~~m~~~g 291 (566)
+|..-|.+.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888887764
No 411
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.05 E-value=1.2e+02 Score=29.23 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=64.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM----PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
|--=.+-|.+..++..|...|.+- --.|| .+.|+.-..+-...|++..++.-..+++.++|.....|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333345567778888888888765 11343 467777667777789999999999999999999988888888888
Q ss_pred HhcCChhHHHHHHH
Q 047067 408 ASAGRLNDAARARK 421 (566)
Q Consensus 408 ~~~g~~~~a~~~~~ 421 (566)
....++++|....+
T Consensus 164 ~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 164 LELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHh
Confidence 88877666655443
No 412
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.00 E-value=45 Score=31.48 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
+.|+.+.|..+|+.++.+.|.++.+..-++......++.-+|.++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~ 172 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC 172 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence 334444444444444444444444444444443333333333333
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.92 E-value=48 Score=33.42 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
+.....++++.|..++.++++++|+.+..|..-+.++.+.+++..|..=..+..+..
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 344566789999999999999999999888888899999999999998888877654
No 414
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=42.01 E-value=4.8e+02 Score=28.17 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCc-------cHHHHHHHHHHHC
Q 047067 28 AMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQP-------ENAIILFSQMLRL 87 (566)
Q Consensus 28 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~ 87 (566)
.+| ++|-.+.|||.+++|.++..... .+....+-..+..|..+.+- ++...-|++..+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344 36677788999999998883332 33445566677777665322 2444455555544
No 415
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.12 E-value=75 Score=29.67 Aligned_cols=59 Identities=27% Similarity=0.220 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 368 ALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
.+=.++...++++.|....++.+.++|.++.-..--+-+|.+.|...-|..-++...++
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 33456788889999999999999999999877778888899999999998888886654
No 416
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=40.41 E-value=84 Score=18.99 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHH--HHHHHhcCC
Q 047067 368 ALLGACRMHKNVELGAYA--AERIFELDP 394 (566)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~--~~~~~~~~p 394 (566)
.+.-.+-..|++++|+.+ ++-+..++|
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 334444555566666655 324444444
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.23 E-value=52 Score=29.82 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
....++.+.+.+++.+++++-|.....|..++..-.++|+++.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999999987744
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.77 E-value=1.1e+02 Score=26.90 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=19.1
Q ss_pred CccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 328 EPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
.|+..+|..++..+...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666666666666666666666655
No 419
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.72 E-value=4.4e+02 Score=27.10 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCCCCh----------HHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCH--H-----HHHHHHH-HHh
Q 047067 146 DDAWFLFTALESKNE----------VSWNALIAGHARKSEGEKALRTFSEMLREG-FEPTH--F-----SYSSVFT-ALA 206 (566)
Q Consensus 146 ~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~--~-----t~~~ll~-~~~ 206 (566)
|+|+...++.++.|. .+...++..-.-.|++.+|++-...|.+.- -.|.+ . ....++. -|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 445555555555441 122333444456899999999999887642 12331 1 1222333 345
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH--------HHH--HHHc
Q 047067 207 STGSLEQGKWVHAHVIKSGGQLVAF--VGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSM--------LTG--CAQH 274 (566)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~--~~~~ 274 (566)
..+.++.|..-|....+.--..|.. .-..+.-.|.+.|+.++-.++++.+..+|..++..- +.| ....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 6677888887777776654333332 223455678888888888888888866654443321 111 1235
Q ss_pred CCHHHHHHHHHHHHH
Q 047067 275 GLGKATVRWFEKMLR 289 (566)
Q Consensus 275 g~~~~A~~~~~~m~~ 289 (566)
+++.+|...+++-++
T Consensus 459 n~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLK 473 (629)
T ss_pred ccHHHHHHHHHHHHh
Confidence 667777766666554
No 420
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.47 E-value=4.4e+02 Score=27.08 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCChhHHHH--HHHH-----HccCCCchHHHHHHHHHHHHhCCCCchhHH--HHHHHHHH--hcCCHH
Q 047067 78 IILFSQMLRLGLKPNQFTLSS--VLKA-----SGAGATDDKFGRQVHAFCLKYGYDWNVYVG--SSLLDMYA--RFDQMD 146 (566)
Q Consensus 78 ~~l~~~m~~~g~~p~~~t~~~--ll~a-----~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~--~~li~~y~--~~g~~~ 146 (566)
.++++.+.+.|..|+...... .+.. +...+..+ +.+.+.+.|..++.... .+.+...+ +.|+.+
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~-----iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~ 122 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE-----IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYS 122 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH-----HHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHH
Q ss_pred HHHHHHHhCCCCChHHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCChHHHHHHHHHHH
Q 047067 147 DAWFLFTALESKNEVSWN--ALIAGHARKSEGEKALRTFSEMLREGFEPTHFSY--SSVFTALASTGSLEQGKWVHAHVI 222 (566)
Q Consensus 147 ~A~~~f~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~--~~ll~~~~~~~~~~~a~~~~~~~~ 222 (566)
-...+++.-...+..... +.+...+..|. .-.++++.+.+.|..++...- .+.+..++..| -.++.+.++
T Consensus 123 iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll 196 (480)
T PHA03100 123 IVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLL 196 (480)
T ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHH
Q ss_pred HhCCCCcHhHH--------HHHHHHHHhcCC--HHHHHHHHHh---cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 223 KSGGQLVAFVG--------NTLVDMYAKSGS--IEDAEKVFNR---LLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 223 ~~~~~~~~~~~--------~~li~~~~~~g~--~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
+.|..++.... ...+...+..|+ .+-..-+++. ...+|..-++.|..+..... .++++.+.+
T Consensus 197 ~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~ 271 (480)
T PHA03100 197 DNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLD 271 (480)
T ss_pred HcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHH
Q ss_pred cCCCCC
Q 047067 290 NGIAPN 295 (566)
Q Consensus 290 ~g~~p~ 295 (566)
.|..|+
T Consensus 272 ~gad~n 277 (480)
T PHA03100 272 LGANPN 277 (480)
T ss_pred cCCCCC
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.00 E-value=2.2e+02 Score=23.22 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 047067 112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES 157 (566)
Q Consensus 112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 157 (566)
+.++....+....+.|++.+-.+-+.++-+.+++..|.++|+.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566666666667777777777777777777888888877777654
No 422
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.67 E-value=4e+02 Score=27.82 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--Chh---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLKR--DVV---SWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
..|+.-|.+.+++++|..++..|.-. ... +.+.+...+.+..-.++....++.++.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777899999999999999988522 122 233334444444434444455555544
No 423
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.66 E-value=2.1e+02 Score=30.46 Aligned_cols=43 Identities=12% Similarity=-0.022 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCCCh
Q 047067 134 SLLDMYARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKSEG 176 (566)
Q Consensus 134 ~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~ 176 (566)
+|..+|...|++-.+.++++..... =...+|..|....++|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555555555555555555544321 123455555555555544
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.60 E-value=1.6e+02 Score=24.62 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCC
Q 047067 60 TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGA 107 (566)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 107 (566)
.-..++..+.+.++.-.|.++|+++.+.+...+..|.-..|+.+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555555555666666666666555444444444444444333
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.41 E-value=2.2e+02 Score=23.07 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=31.8
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 381 LGAYAAERIFE--LDPHDSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 381 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
.+..+|+.|.. ++-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778888775 4455666788888888889999999888875
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.23 E-value=62 Score=22.45 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 265 NSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
-.+|.+|.+.|++++|.++.+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467888888888888888877765
No 427
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.05 E-value=1.7e+02 Score=21.76 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.9
Q ss_pred HHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHH
Q 047067 139 YARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 179 (566)
.+...+.+.|.++++.++.++..+|.+...++-..|...-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34455677888888888888888888888888777765544
No 428
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.97 E-value=1.4e+02 Score=25.72 Aligned_cols=63 Identities=13% Similarity=-0.046 Sum_probs=31.7
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCc
Q 047067 47 RKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATD 109 (566)
Q Consensus 47 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 109 (566)
.++++...-+....-..++..+....+.-.|.++++.+.+.+..++..|.-..|..+...|-+
T Consensus 14 ~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 14 EKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 333333333333334444555554555556666666666666555555555555555444433
No 429
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.66 E-value=1.1e+02 Score=23.12 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=23.5
Q ss_pred hcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCC
Q 047067 39 KCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73 (566)
Q Consensus 39 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 73 (566)
..-+.+.+.++++.++.+.+.+|..+..++-..+.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 44566777777777777777777777777755443
No 430
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.64 E-value=48 Score=36.08 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067 274 HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA-LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALK 352 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (566)
+.++++.+.+.+...--| -++|..+.+.|-++-|..+.+ .-.+ ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 455666665544332222 134444556677776766652 2111 233457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067 353 FIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 353 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 392 (566)
.-.+.+ |..+|..|......+|+.+.|+..|++....
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 888875 6788999999999999999999988887543
No 431
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.45 E-value=4.5e+02 Score=26.31 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 231 FVGNTLVDMYAKSGSIEDAEKVFNRLLK------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
..+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456788889999999999999988532 1344566666666677788877777777665
No 432
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=36.03 E-value=3.4e+02 Score=24.67 Aligned_cols=176 Identities=14% Similarity=0.052 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHhCC--CC-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047067 143 DQMDDAWFLFTALE--SK-NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHA 219 (566)
Q Consensus 143 g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 219 (566)
|-.+-|+-=|.+.. .| -+..||-+.--+...|+++.|.+.|+...+.+..-+ .+...-.-++--.|++..|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHH
Confidence 44444444444422 22 345677777777788888888888887776432211 122111112234466666655444
Q ss_pred HHHHhC-CCCcHhHHHHHHHHHHhcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 047067 220 HVIKSG-GQLVAFVGNTLVDMYAKSGSIEDAEK-VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-- 295 (566)
Q Consensus 220 ~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 295 (566)
..-+.. -.|-...|--++. ..-++.+|.. +.++..+.|..-|..-|-.|.-..-.++ .+++++... -.-+
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~-a~~n~~ 231 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKAD-ATDNTS 231 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-ccchHH
Confidence 443332 1232233322221 2234445543 3344455555556555555443222222 233333331 1111
Q ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHhHHhh
Q 047067 296 -----QVTFLCVLTACSHAGLLDEGQGYFALMKKH 325 (566)
Q Consensus 296 -----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 325 (566)
..||--|..-+...|+.++|..+|+.....
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 235666666677777777777777655443
No 433
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.98 E-value=1.9e+02 Score=21.83 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCChh-HHHHHHHHH
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD--SGPHILLANIYASAGRLN-DAARARKMM 423 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~a~~~~~~m 423 (566)
|....-.+...+...|+++.|+..+-.+++.+|+. ...-..|+.++.-.|.-+ -+.+...+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45666677778888888888888888888876543 556677777777777643 455555544
No 434
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.70 E-value=14 Score=35.39 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=70.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCC
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAH 453 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~ 453 (566)
...|.++.|++.+..+++++|.....|..-.+++.+++++..|++-.....+.+.+...++-| .
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf----------------r 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF----------------R 188 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch----------------h
Confidence 356889999999999999999999999999999999999999999888888765544444433 1
Q ss_pred cchHHHHHHHHHHH---HHHHHcCcccCCCccccccc
Q 047067 454 PQRAMIHKKWREIS---EKIKQIGYVPDSSHVLSYAD 487 (566)
Q Consensus 454 ~~~~~~~~~l~~~~---~~~~~~g~~p~~~~~~~~~~ 487 (566)
+........|.+.. +.-.+.+|.+++.-++..+.
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVF 225 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhc
Confidence 22233333333333 33346788888777765444
No 435
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=35.66 E-value=91 Score=31.03 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=12.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
.+|.+.++.+.|+....+.+-++|..+
T Consensus 236 ~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 236 TCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 344444444444444444444444443
No 436
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.34 E-value=57 Score=22.62 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 188 (566)
|-.-.-.+|.+|.+.|++++|.++.+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333445678888889999999888887754
No 437
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.49 E-value=6.2e+02 Score=27.27 Aligned_cols=189 Identities=11% Similarity=0.073 Sum_probs=100.1
Q ss_pred CCChhHHHHHHHHHccCCCchHHHHHHHHHHH-HhCCCCc--hhHHHHHHHHHH-hcCCHHHHHHHHHhCCC----CCh-
Q 047067 90 KPNQFTLSSVLKASGAGATDDKFGRQVHAFCL-KYGYDWN--VYVGSSLLDMYA-RFDQMDDAWFLFTALES----KNE- 160 (566)
Q Consensus 90 ~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~-~~g~~~~--~~~~~~li~~y~-~~g~~~~A~~~f~~~~~----~~~- 160 (566)
+.+...|..+|+ .|.+.++.+. +..++|. ..++--+...|. ...+++.|+..+++... ++.
T Consensus 27 ~~~l~~Y~kLI~----------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIA----------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred hhhHHHHHHHHH----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 345566777776 5566666666 3334443 345556666665 56788889888886432 111
Q ss_pred ----HHHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCHHHHHHH-HHHHhccCChHHHHHHHHHHHHhC---CCC
Q 047067 161 ----VSWNALIAGHARKSEGEKALRTFSEMLREG----FEPTHFSYSSV-FTALASTGSLEQGKWVHAHVIKSG---GQL 228 (566)
Q Consensus 161 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~ 228 (566)
..-..++..+.+.+... |...+++..+.- ..+-...|..+ +..+...++...|.+.++.+.... ..+
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 12234556666666555 888888766531 11112222222 222222367777877777765532 244
Q ss_pred cHhHHHHHHHHHH--hcCCHHHHHHHHHhc----CC---------CChhHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 047067 229 VAFVGNTLVDMYA--KSGSIEDAEKVFNRL----LK---------RDVVSWNSMLTG--CAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 229 ~~~~~~~li~~~~--~~g~~~~A~~~~~~~----~~---------~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 289 (566)
...++-.++.+.. +.+..+++.+..+++ .. |-..+|..++.. +...|++..+...++++.+
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444332 344455555555544 11 123455555544 3446666666665555543
No 438
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.94 E-value=4.5e+02 Score=25.51 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=19.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhHHhhCC
Q 047067 299 FLCVLTACSHAGLLDEGQGYFALMKKHGV 327 (566)
Q Consensus 299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 327 (566)
|..+...+.++|..+.|..+++.+.+.++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33444445678888888888866666665
No 439
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.92 E-value=65 Score=30.50 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 343 RAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
+.|+.++|..+|+.. .+.|+. .+..-+..-.-.+++.-+|-+.|-+++.+.|.+..+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 456666666666644 334432 2333333333445566666666666666666665443
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.19 E-value=5.1e+02 Score=25.96 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC------CChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067 130 YVGSSLLDMYARFDQMDDAWFLFTALES------KNEVSWNALIAGHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 188 (566)
....-+.+.|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|......-.+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3466788899999999999999988543 1344677777777777888887777777655
No 441
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=32.48 E-value=16 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=16.6
Q ss_pred ceEEEecCCccccccccccCC
Q 047067 542 REIIVRDTNRFHHFRDGFCSC 562 (566)
Q Consensus 542 ~~~~~~~~~~~h~~~~g~cs~ 562 (566)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467788999999999998653
No 442
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.47 E-value=2.9e+02 Score=23.09 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=17.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047067 166 LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA 206 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 206 (566)
++..+.+.+++-.|.++++++.+.+...+..|.-..|+.+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 34444444444445555555544443333334333333333
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.00 E-value=2.6e+02 Score=26.70 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067 133 SSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 133 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 188 (566)
-.++..+.+..++....+.+..+. .+..-...+......|++..|+++..+...
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555555555555555555542 334445567777788888888888877755
No 444
>PRK14700 recombination factor protein RarA; Provisional
Probab=31.84 E-value=4.7e+02 Score=25.07 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067 162 SWNALIAGHAR---KSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS 210 (566)
Q Consensus 162 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 210 (566)
.+.-+|+++.+ ..|++.|+-.+-+|.+.|-.|....-..++-+....|.
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34445666654 57899999999999999988887777777777766664
No 445
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=31.26 E-value=7.8e+02 Score=27.49 Aligned_cols=217 Identities=15% Similarity=0.058 Sum_probs=117.1
Q ss_pred HHHhcCCHHHHHHHHHhCC----CCC-------hHHHHHHHH-HHHhCCChhHHHHHHHHHHHCC----CCCCHHHHHHH
Q 047067 138 MYARFDQMDDAWFLFTALE----SKN-------EVSWNALIA-GHARKSEGEKALRTFSEMLREG----FEPTHFSYSSV 201 (566)
Q Consensus 138 ~y~~~g~~~~A~~~f~~~~----~~~-------~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g----~~pd~~t~~~l 201 (566)
......++++|..+..+.. .++ ...|+++-. .....|++++|.++-+.....= ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3455678888888877643 322 125666543 3445788899988887776531 22344556666
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH-----HHHHhcCCH--HHHHHHHHhcC-----CCC-----hhHH
Q 047067 202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV-----DMYAKSGSI--EDAEKVFNRLL-----KRD-----VVSW 264 (566)
Q Consensus 202 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~--~~A~~~~~~~~-----~~~-----~~~~ 264 (566)
..+..-.|++++|..+..+..+..-..++..+.... ..+...|+. .+....|.... +.. ....
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 677778899999998888777653333443333222 234455632 22333333331 111 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH----HHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHhHHhhCCCc----cHHHH
Q 047067 265 NSMLTGCAQHGLGKATVRWFEK----MLRNGIAPNQVTF--LCVLTACSHAGLLDEGQGYFALMKKHGVEP----EEAHY 334 (566)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~ 334 (566)
..+..++.+ .+.+..-... -......|-...+ ..|.......|++++|...+..+......+ +...-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444445444 3333322222 2222222222222 255667777899999988886555443333 22222
Q ss_pred HHHHH--HhhhcCCHHHHHHHHHhC
Q 047067 335 VTFVD--LLGRAGLLDRALKFIREM 357 (566)
Q Consensus 335 ~~li~--~~~~~g~~~~A~~~~~~~ 357 (566)
...+. .....|+.++|.....+-
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 22222 334678888887777664
No 446
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.13 E-value=2.5e+02 Score=29.00 Aligned_cols=89 Identities=12% Similarity=0.174 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CCchHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH--------DSGPHI 401 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 401 (566)
++..|-..+.-|...+++++|.++.+-.+ +...|.+|......+.+...++..|..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456677778888899999998887664 5678888888878888887777777776654321 111222
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 047067 402 LLANIYASAGRLNDAARARK 421 (566)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~ 421 (566)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444455677777766654
No 447
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.96 E-value=99 Score=29.45 Aligned_cols=74 Identities=8% Similarity=0.063 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047067 329 PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGA-LLGACRMHKNVELGAYAAERIFELDPHDSGPHIL 402 (566)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 402 (566)
.|...|...+.-..+.|.+.+...++.+. ...| |+..|-. --.-+..+++++.+..++.+.+.++|++|..|..
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34444544444444455555555566555 3345 4556633 1223567889999999999999999999877653
No 448
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.68 E-value=4.2e+02 Score=24.18 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
+...+++++|.+.+-.-.-. ..-..-++.++...|+.+.|+.+++.+.- .-.+......++.+ ...+.+.+|..+-
T Consensus 88 ~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred HhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH-HHcCCHHHHHHHH
Q ss_pred HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHH
Q 047067 320 ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVW 366 (566)
Q Consensus 320 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 366 (566)
+...+ .-....+..++..+.....-....+.+-.+|+.+....|
T Consensus 164 R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~ 207 (226)
T PF13934_consen 164 RSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQW 207 (226)
T ss_pred HhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHH
No 449
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.68 E-value=7.6e+02 Score=27.14 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccC
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAG 106 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 106 (566)
..++..+|+-+.-.|++++|-...-.|-..+..-|..-+..++..++......+ +....-..+...|-.+|-.+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-
Confidence 346677777777788888888888777777777777777777666655433222 2221111233344445544443
Q ss_pred CCchHHHHHHHHHHHHh------------CC-------CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067 107 ATDDKFGRQVHAFCLKY------------GY-------DWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE 160 (566)
Q Consensus 107 ~~~~~~~~~i~~~~~~~------------g~-------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 160 (566)
. .....++...+. .. .-+..+.-.|+..|...+++.+|..++-...++++
T Consensus 468 ~----~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 468 S----DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred H----HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1 112222222111 00 11222334488888888888888888877776543
No 450
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=30.13 E-value=3e+02 Score=22.39 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWG-ALLGACRMHKNVELGAYAAERI 389 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~ 389 (566)
..+-.++..++.=.|..++|.++++...--++....| .++..|+...+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455566666666777777777777664334443333 4556666666665555554443
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.12 E-value=2.6e+02 Score=24.08 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=21.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047067 165 ALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG 209 (566)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 209 (566)
+++..+...++.-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333344445555555555555554445444444444444444
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.12 E-value=3.7e+02 Score=24.90 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=30.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLR----NG-IAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
|..-|...|++++|+++|+.+.. .| ..+...+...+..+..+.|+.+....+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45556677777777777776632 22 2233444555556666666666655544
No 453
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.71 E-value=2.6e+02 Score=26.67 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
+..+.+.+++....+.+..+ ..+..-...+..+...|++..|+++..+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444443333 1222333455556667777777777766654
No 454
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.47 E-value=7.1e+02 Score=26.48 Aligned_cols=61 Identities=7% Similarity=-0.044 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067 129 VYVGSSLLDMYARFDQMDDAWFLFTALESKN-EVSWNALIAGHARKSEGEKALRTFSEMLREGF 191 (566)
Q Consensus 129 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 191 (566)
...++.|+...... +.+.-.++++++.. . ...|..++++....|-.....-+.+.+....+
T Consensus 310 ~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 310 AAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34455555544333 34455555555444 3 56677777777777765555444444444333
No 455
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.46 E-value=99 Score=22.20 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047067 9 KEARIVHAHILGSAFKNDIAMQNTILNAYAKC 40 (566)
Q Consensus 9 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 40 (566)
+.|+++...+..-. ..++..||++...+.+.
T Consensus 14 EmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 14 EMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 45555555554432 56677788776665543
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.46 E-value=4.1e+02 Score=23.69 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH-HHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE-AHYVTFVD 339 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~ 339 (566)
....+.++..+...|+++.|-+.|--++... ..|..+ .+.-+.+++... +-.+.. .-++.|+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~------------~W~iG~eIL~~~---~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS------------LWGIGAEILMRR---GEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh------------cchHHHHHHHcC---CCcchHHHHHHHHHH
Confidence 4567788888899999999999999888753 334332 244444444221 111222 45556666
Q ss_pred HhhhcCCHHHHHHHH------HhC--CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067 340 LLGRAGLLDRALKFI------REM--PIEPTA---AVWGALLGACRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~------~~~--~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 392 (566)
.|.......+..... +.- ...|.. ..|..++..-.+....+.+.++.+++-++
T Consensus 105 ~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~El 168 (199)
T PF04090_consen 105 FYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDEL 168 (199)
T ss_pred HHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 666443333322221 111 011211 23455555544444566677788887774
No 457
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.33 E-value=1.6e+02 Score=20.70 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067 258 KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307 (566)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 307 (566)
.+....++.++..++...-.++++..+.++...|. .+..+|.--++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34455666666666666666777777777777664 34455544444443
No 458
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.89 E-value=5.3e+02 Score=24.74 Aligned_cols=81 Identities=11% Similarity=-0.086 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHHhh-CC---CccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 312 LDEGQGYFALMKKH-GV---EPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAE 387 (566)
Q Consensus 312 ~~~a~~~~~~~~~~-~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (566)
.+++.+.|...... .- ..+......+.....+.|..++-..+++...-.++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56777788444442 11 334455566667777888877766666665445677888889999999999999889999
Q ss_pred HHHhc
Q 047067 388 RIFEL 392 (566)
Q Consensus 388 ~~~~~ 392 (566)
.++.-
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 88874
No 459
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.64 E-value=3.2e+02 Score=22.17 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 213 QGKWVHAHVIKSGGQ-LVAFVGNTLVDMYAKSGSIEDAEKVFN 254 (566)
Q Consensus 213 ~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (566)
.+..+|..|...|+. --...|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555542 233445555566666666666666665
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.46 E-value=3.6e+02 Score=28.15 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCC--CcchHH---HHHHHHHhCCCccHHHHHHHHHHH
Q 047067 31 NTILNAYAKCGCLDEARKLFDEMPVK--DMVTWT---ALISGYSQNDQPENAIILFSQMLR 86 (566)
Q Consensus 31 ~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~ 86 (566)
..|+.-|.+++++++|..++..|.-. ....|. .+...+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45778899999999999999988622 222333 333444444333444444454443
No 461
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.22 E-value=1.2e+02 Score=30.46 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREMPIEP----------TAAVWGALLGACRMHKNVELGAYAAERIF 390 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 390 (566)
.-.|++..+-.|++..|+++++.+.+.. .+.++--+.-+|...+++.+|.+.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888773221 12233344455556666666666666554
No 462
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.94 E-value=2.6e+02 Score=29.82 Aligned_cols=72 Identities=8% Similarity=0.152 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHH------HHHHHHhHHhhCCCccHHHHHHH
Q 047067 266 SMLTGCAQHGLGKATVRWFEKMLRN--GIAPNQVTFLCVLTACSHAGLLDE------GQGYFALMKKHGVEPEEAHYVTF 337 (566)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~------a~~~~~~~~~~~~~p~~~~~~~l 337 (566)
+|+.+|..+|++-.+.++++..... |-+.=...++..|+...+.|.++. +.+.+ ....+.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~l---q~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELL---QQARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHH---HHhhcCCcchHHHHH
Confidence 6788888888888888888877653 222224456667777777776542 22333 222344566666666
Q ss_pred HHH
Q 047067 338 VDL 340 (566)
Q Consensus 338 i~~ 340 (566)
+.+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 543
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.87 E-value=8.5e+02 Score=27.30 Aligned_cols=131 Identities=12% Similarity=0.152 Sum_probs=86.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047067 238 DMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQG 317 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 317 (566)
.....||+++.|.+.-.++. +..+|..|+......|+.+-|...|++.+.- +..+| .|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf----ekLsf-----LYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNF----EKLSF-----LYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh----hheeE-----EEEEeCCHHHHHH
Confidence 34567899999988876654 4568999999999999999999998887652 22233 3445678777666
Q ss_pred HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
+-..... ..|... ....-.-.|++++=.++++..+.-|- .| + ....+|.-+.|.++.++.-.
T Consensus 720 m~~iae~---r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ay---l-ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI---RNDATG---QFQNALYLGDVKERVKILENGGQLPL--AY---L-TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh---hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HH---H-HHhhcCcHHHHHHHHHhhcc
Confidence 5543332 223221 11122236889999999988864432 22 1 23567888889888888765
No 464
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=4.3e+02 Score=25.08 Aligned_cols=94 Identities=11% Similarity=-0.023 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPTAAVW-GALLGACRMHKNVELGAYAAERIFELDPHDS--GPH 400 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~ 400 (566)
...+..+.+-|++.++.+.+.++..+. +.+-|+..- -.|.-.|....-+++-++..+.+++.+-+-. .-|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 456667788899999998888887654 444444322 1222223333445666666666666553311 111
Q ss_pred HH-HHHHHHhcCChhHHHHHHHHHH
Q 047067 401 IL-LANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 401 ~~-l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
-. -+-.+....++.+|..++-...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 11 2222334456666666655443
No 465
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=27.85 E-value=1.7e+02 Score=21.90 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHH
Q 047067 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENA 77 (566)
Q Consensus 11 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 77 (566)
...+.+.+++.|+- +..-.=..-++..+.+.|..+.+.++.++..+|.....++-..|...-|
T Consensus 16 v~~ild~L~~~gvl----t~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGVL----TLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 34566677666622 2222222233556677788888888888877777777777665544433
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.68 E-value=3.5e+02 Score=25.01 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=28.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHh----C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 201 VFTALASTGSLEQGKWVHAHVIKS----G-GQLVAFVGNTLVDMYAKSGSIEDAEKVFN 254 (566)
Q Consensus 201 ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (566)
+..-|...|+++.|.++++.+... | ..+...+...+..++.+.|+.++...+--
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344455555555555555555321 1 13344455566666777777766655543
No 467
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.59 E-value=7.1e+02 Score=25.81 Aligned_cols=289 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred hHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 047067 44 DEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKY 123 (566)
Q Consensus 44 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~ 123 (566)
+.|.+.|+-....+...+..+-.++.-..+.+....+|++..+. -|+...|...|..|-..-... .+..+...+
T Consensus 268 ~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~-r~~~I~h~~--- 341 (568)
T KOG2396|consen 268 DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFL-RGKRILHTM--- 341 (568)
T ss_pred HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhh-hhhHHHHHH---
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047067 124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFT 203 (566)
Q Consensus 124 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 203 (566)
...+.+.........-+......+.......++...-..+...+++-|...|..-+.
T Consensus 342 -----------------------~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~ 398 (568)
T KOG2396|consen 342 -----------------------CVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQ 398 (568)
T ss_pred -----------------------HHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHH
Q ss_pred HHhcc--CChHHHHHHHHHHHHhCCCCcHhHHHHHH-HHHHhcCCHHHHHHHHHhcCCCChhHH-HHHHHHHHHcCCHHH
Q 047067 204 ALAST--GSLEQGKWVHAHVIKSGGQLVAFVGNTLV-DMYAKSGSIEDAEKVFNRLLKRDVVSW-NSMLTGCAQHGLGKA 279 (566)
Q Consensus 204 ~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~ 279 (566)
..... .---.-..++..+.+.-..+....+++.. ..+......+.....+..+..++..+. +..+.-+-+.|-..+
T Consensus 399 ~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ 478 (568)
T KOG2396|consen 399 VLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKK 478 (568)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHH
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 280 TVRWFEKMLRNGIAPNQVTFLCVLTACSH--AGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
|...|..+... .+|+...|..++..-.. +-++.-+..++ .++...| .|...|...+..=...|..+.+-.++.+
T Consensus 479 ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 479 ARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHH
Q ss_pred C--CCCCCHH
Q 047067 357 M--PIEPTAA 364 (566)
Q Consensus 357 ~--~~~p~~~ 364 (566)
. .++|...
T Consensus 556 a~ktl~~~~~ 565 (568)
T KOG2396|consen 556 AMKTLQGESA 565 (568)
T ss_pred HHHhhChhhh
No 468
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.44 E-value=6.3e+02 Score=25.21 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=17.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 047067 270 GCAQHGLGKATVRWFEKMLRNGIAPNQ 296 (566)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~~ 296 (566)
.+.+.+++..|.++|+++....+.|+.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhh
Confidence 445667777777777777766444443
No 469
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.39 E-value=6.4e+02 Score=25.22 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 047067 169 GHARKSEGEKALRTFSEMLREGFEPTHF--SYSSVFTALA--STGSLEQGKWVHAHVIKS 224 (566)
Q Consensus 169 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 224 (566)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778889999999888876 555544 2333334443 233456666666665543
No 470
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.36 E-value=1.3e+02 Score=23.57 Aligned_cols=20 Identities=10% Similarity=0.219 Sum_probs=8.9
Q ss_pred HHHHHhCCChhHHHHHHHHH
Q 047067 167 IAGHARKSEGEKALRTFSEM 186 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m 186 (566)
+..|...++.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555544443
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.15 E-value=1.7e+02 Score=23.15 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCch
Q 047067 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD 110 (566)
Q Consensus 63 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 110 (566)
.++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355566666667778888888888776677777766676666655544
No 472
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.00 E-value=4.9e+02 Score=23.75 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=7.0
Q ss_pred HHHccCCHHHHHHHH
Q 047067 305 ACSHAGLLDEGQGYF 319 (566)
Q Consensus 305 a~~~~g~~~~a~~~~ 319 (566)
.....|++++|.+..
T Consensus 73 ~~I~~G~Ie~Aie~i 87 (228)
T KOG2659|consen 73 RAIEEGQIEEAIEKV 87 (228)
T ss_pred HHHHhccHHHHHHHH
Confidence 334445555554444
No 473
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.60 E-value=6.5e+02 Score=28.32 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=29.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 047067 200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAF--VGNTLVDMYAKSGSIEDAEKVFNRLL 257 (566)
Q Consensus 200 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (566)
..+...+..|+.+.++.+ ++.|..++.. ...+-+...+..|+.+-+.-+++.-.
T Consensus 624 ~~L~~Aa~~g~~~~v~~L----l~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKEL----LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred hHHHHHHHhCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 345556667777655544 3445444322 11233444566788877777776543
No 474
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.59 E-value=6.8e+02 Score=25.30 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=30.6
Q ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047067 162 SWNALIAGHAR---KSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG 209 (566)
Q Consensus 162 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 209 (566)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555555 4788888888888888887776555544444444333
No 475
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=26.57 E-value=3.8e+02 Score=27.37 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhc-----CCCCCchHHHHH
Q 047067 358 PIEPTAAVWGALLGA-CRMHKNVELGAYAAERIFEL-----DPHDSGPHILLA 404 (566)
Q Consensus 358 ~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~l~ 404 (566)
|-.||..-|-..-.+ |+..|+++.-.++|+-++++ +|-++.+...+.
T Consensus 331 psh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssll 383 (615)
T KOG0508|consen 331 PSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLL 383 (615)
T ss_pred CCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH
Confidence 455666555444333 77888888888888887753 466665555443
No 476
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.34 E-value=5.5e+02 Score=24.16 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCC
Q 047067 376 HKNVELGAYAAERIFELDPHDSGPHILLANIYASAG---------------RLNDAARARKMMKESGV 428 (566)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~ 428 (566)
..+.++|...|+++-+.+. ......+. .+...| +...|...+......|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 3466777777777777665 33444455 444333 55566666666665554
No 477
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=26.12 E-value=5.8e+02 Score=24.30 Aligned_cols=157 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH-----
Q 047067 79 ILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFT----- 153 (566)
Q Consensus 79 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~----- 153 (566)
..|.-=+..|.++...-+..+++.+...-... ......+.+... ..+.+|+++|+
T Consensus 98 DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~-k~~~Y~~LVk~N-------------------~~Vv~aL~L~~~~~~~ 157 (292)
T PF13929_consen 98 DYFLLKKSMGCELTKEDLISFLKLVIINLSSN-KSFNYWDLVKRN-------------------KIVVEALKLYDGLNPD 157 (292)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhccccc-cchHHHHHHHhh-------------------HHHHHHHHHhhccCcc
Q ss_pred hCCCCChHHHHHHHHHHHh-CCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCc
Q 047067 154 ALESKNEVSWNALIAGHAR-KSEGEKALRTFSEMLREG--FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS-GGQLV 229 (566)
Q Consensus 154 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 229 (566)
+-.-.|...-..++..... .+..-.|+-=+-...... -.++..+...++..++..+++..-.+++...... +...|
T Consensus 158 ~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D 237 (292)
T PF13929_consen 158 ESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGND 237 (292)
T ss_pred cceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCC
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067 230 AFVGNTLVDMYAKSGSIEDAEKVFNR 255 (566)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (566)
...|..+|+.-.+.|+..-..++.++
T Consensus 238 ~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 238 PRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhhC
No 478
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=5.3e+02 Score=23.85 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=47.6
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLL--KRDV-VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF-LCVLTACSHAGLLDEG 315 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a 315 (566)
|.....++.|+..|.+.. .|++ .-|+.-+..+.+..+++.+..=-++.++ +.||.+-- ..+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 445566777777776653 4544 3455666777777777777766666665 56665432 2333445556666666
Q ss_pred HHHHH
Q 047067 316 QGYFA 320 (566)
Q Consensus 316 ~~~~~ 320 (566)
+..+.
T Consensus 98 I~~Lq 102 (284)
T KOG4642|consen 98 IKVLQ 102 (284)
T ss_pred HHHHH
Confidence 66663
No 479
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.73 E-value=3.9e+02 Score=22.21 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=44.7
Q ss_pred CccHHHHHHHHHHhhhcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 328 EPEEAHYVTFVDLLGRAGLLD---RALKFIREM-P-IEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
.++..+--.+.-++.+..+.+ +-..++++. + -.|+ ....--|.-++.+.++++.+++..+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 444444445555666555443 344555555 2 2332 22333455678899999999999999999999986
No 480
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.69 E-value=5.6e+02 Score=24.04 Aligned_cols=148 Identities=9% Similarity=0.104 Sum_probs=93.5
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHH---hCC--CCcHhHHHHHHHHHHhc
Q 047067 172 RKSEGEKALRTFSEMLREGFEP---THFSYSSVFTALASTGSLEQGKWVHAHVIK---SGG--QLVAFVGNTLVDMYAKS 243 (566)
Q Consensus 172 ~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~ 243 (566)
+..++++|+.-|.+..+..-.- .......++....+.+++++....+.+++. +.+ .-+....|++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4558899999999987743222 233455678888999999998888887753 222 33455667888877766
Q ss_pred CCHHHHHHHHHhcC-----CCChhHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHH
Q 047067 244 GSIEDAEKVFNRLL-----KRDVVSW----NSMLTGCAQHGLGKATVRWFEKMLRNGIAP----N-------QVTFLCVL 303 (566)
Q Consensus 244 g~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~-------~~t~~~ll 303 (566)
.+.+--...|+.-. .+|...| +.|...|...|.+.+..++++++...-..- | ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 66666555555431 2233333 456777777888888888888876642111 1 12455555
Q ss_pred HHHHccCCHHHHHHHH
Q 047067 304 TACSHAGLLDEGQGYF 319 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~ 319 (566)
..|....+-..-..++
T Consensus 199 QmYT~qKnNKkLK~lY 214 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALY 214 (440)
T ss_pred hhhhhhcccHHHHHHH
Confidence 6666666666666666
No 481
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.51 E-value=1.5e+02 Score=21.74 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=4.7
Q ss_pred cCChhHHHHHHc
Q 047067 40 CGCLDEARKLFD 51 (566)
Q Consensus 40 ~g~~~~A~~~f~ 51 (566)
.|+++-...+++
T Consensus 7 ~~~~~~~~~ll~ 18 (89)
T PF12796_consen 7 NGNLEILKFLLE 18 (89)
T ss_dssp TTTHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 334433333333
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.44 E-value=2.9e+02 Score=29.96 Aligned_cols=110 Identities=20% Similarity=0.292 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHccCCHHHHHHHH-HhHHhhC-CCc
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT----------FLCVLTACSHAGLLDEGQGYF-ALMKKHG-VEP 329 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~-~~~~~~~-~~p 329 (566)
.+-..|+-.|....+++..+++.+.++. -||..- |.-.++--.+-|+-+.|..+. .++.+.| +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4566678888889999999999999887 344322 222233334567888888877 5555544 456
Q ss_pred cHHH-----HHHH--HHHhhhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHH
Q 047067 330 EEAH-----YVTF--VDLLGRAGLLDRALKFIREM-PIEPTA---AVWGALLGACR 374 (566)
Q Consensus 330 ~~~~-----~~~l--i~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~ll~~~~ 374 (566)
|... |--+ -..|...+..+.|.+.|++. .++|.. ..+.+|+.+..
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence 6432 2211 12344556677888889887 667755 34555555443
No 483
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.33 E-value=6.2e+02 Score=24.38 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047067 216 WVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL 256 (566)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (566)
++|+.+...++.|.-+.+.-+.-++.++=.+.+.+.+++.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 34444444455555554444444444444555555555544
No 484
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=25.31 E-value=3.7e+02 Score=21.78 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhcCCHHHHHH-------HHHhC-CCCCCH-HHHHHHH----HHHHhcCCHHHHHHHHHHHHh
Q 047067 331 EAHYVTFVDLLGRAGLLDRALK-------FIREM-PIEPTA-AVWGALL----GACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~-------~~~~~-~~~p~~-~~~~~ll----~~~~~~g~~~~a~~~~~~~~~ 391 (566)
...+..|..++.+.|++++++. +|++= .++.|. ..|-+.+ .++-..|+.++|...|+..-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4456667777888888776544 44433 344454 5665544 345677899999988887655
No 485
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=24.73 E-value=9.8e+02 Score=26.48 Aligned_cols=107 Identities=10% Similarity=0.076 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCC
Q 047067 190 GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQ--LVAFVGNTLVDMYAKSGSIEDAEKVFNRL-------LKRD 260 (566)
Q Consensus 190 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~ 260 (566)
++..+......++..+ .|+...+..+++.+...... .+... =..+.+.+.+.+. ....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4555666666666543 68888888887776542110 00000 0112233333221 1112
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 310 (566)
...-.+++.. .+.++++.|+.++.+|++.|..|....-..++.+....|
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 2222333332 356889999999999999998887666555555554444
No 486
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=24.64 E-value=83 Score=29.94 Aligned_cols=77 Identities=9% Similarity=0.017 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEE
Q 047067 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHIL-LANIYASAGRLNDAARARKMMKESGVKKEPACSWVE 438 (566)
Q Consensus 360 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~ 438 (566)
..|+..|...+.-....|-+.+.-.++.+.++..|.|...|.. -.--|...++++.++.+|..-...+ ++...-|++
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N--~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN--SRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC--CCCchHHHH
Confidence 3488899988888788888999999999999999999887765 3334566788888888887655433 333345653
No 487
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=24.29 E-value=86 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCc
Q 047067 456 RAMIHKKWREISEKIKQIGYVPDSSH 481 (566)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~g~~p~~~~ 481 (566)
..++...+++..++++..|+.||...
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 45667778888899999999999654
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.84 E-value=4.8e+02 Score=22.96 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=22.9
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047067 337 FVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 372 (566)
.+-.|.+.|.+++|.+++++.--.|+......-+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 345677888888888888877325665544444433
No 489
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.82 E-value=3.6e+02 Score=21.08 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHH
Q 047067 166 LIAGHARKSEGEKALRTFSEML 187 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~ 187 (566)
++..|...+++++|.+-+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4445555666666666665553
No 490
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=23.77 E-value=8.8e+02 Score=27.80 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHHHHHc
Q 047067 262 VSWNSMLTGCAQHG--LGKATVRWFEKMLRN 290 (566)
Q Consensus 262 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 290 (566)
.-...++.+|++.+ +.++|+.+..++++.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 44566788888888 888888888888765
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.65 E-value=6.7e+02 Score=24.17 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh----------hcCCHHHH
Q 047067 281 VRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG----------RAGLLDRA 350 (566)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~----------~~g~~~~A 350 (566)
.++++.|.+.++.|.-..|.-+.-.+++.=.+.....+|+.+.. |..-|..|+..|+ -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777777788888887777777777777777777777754443 1222333333332 24666666
Q ss_pred HHHHHhCC
Q 047067 351 LKFIREMP 358 (566)
Q Consensus 351 ~~~~~~~~ 358 (566)
.++++.-|
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 66666653
No 492
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.53 E-value=2e+02 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067 235 TLVDMYAKSGSIEDAEKVFNRLL-----------KRDVVSWNSMLTGCAQHGLGKATVRWFEKML 288 (566)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (566)
.|+..++-.|++..|+++++.+. .-.+.++--+.-+|...+++.+|++.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666655441 1234455556666666677777776666543
No 493
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.44 E-value=6.2e+02 Score=23.69 Aligned_cols=106 Identities=14% Similarity=-0.013 Sum_probs=49.6
Q ss_pred hcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhccCChH-HHH
Q 047067 141 RFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRT----FSEMLREGFEPTHFSYSSVFTALASTGSLE-QGK 215 (566)
Q Consensus 141 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~-~a~ 215 (566)
+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 445666666665431 2234445554443333 233333455666655555555544433221 122
Q ss_pred HHHHHHHH---hC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 047067 216 WVHAHVIK---SG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL 257 (566)
Q Consensus 216 ~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (566)
.+...+++ .+ ..-++.....+...|.+.|++.+|+..|-.-.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 23333322 21 23456677788888999999998888875443
No 494
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.26 E-value=2.5e+02 Score=21.92 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 047067 236 LVDMYAKSGSIEDAEKVFNRL 256 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~ 256 (566)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445555555555554
No 495
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=23.24 E-value=9.9e+02 Score=27.09 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCC------HHHH-HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 362 TAAVWGALLGACRMHKN------VELG-AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~------~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
++.-.++|+.+++..+. -..+ .-+.+.++++++.||.+-..|+..+.+-.++++.++.
T Consensus 772 npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~~ 836 (863)
T TIGR02414 772 NPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLDPKRQE 836 (863)
T ss_pred CCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCCHHHHH
Confidence 33455888888864332 1233 3455667789999999999999999999999887764
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=23.16 E-value=5.9e+02 Score=23.35 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=17.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC
Q 047067 272 AQHGLGKATVRWFEKMLRNGIA 293 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~ 293 (566)
...|+++.|+++.+.+++.|..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCC
Confidence 4678899999999999888743
No 497
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.09 E-value=7.6e+02 Score=26.30 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNR 255 (566)
Q Consensus 194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (566)
+......++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..+.++|+......+-+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445556666666666666666666554333211 12233444555666666554444333
No 498
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=23.05 E-value=8e+02 Score=24.87 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=59.0
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 307 (566)
++..+-..-+.++...+..+..-.+..-....|...-..-+.+....|. ++|...+...... |+......+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHH
Confidence 3444444445555544443322222222344555555556666666666 5565555553332 22222222222222
Q ss_pred ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 047067 308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP 358 (566)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (566)
..|.. ++...+....+ .+. +-...+.++++.|+...+.-+++.|.
T Consensus 235 l~~~~-~a~~~L~~ll~---d~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 235 VAGGP-DAQAWLRELLQ---AAA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hCCch-hHHHHHHHHhc---Chh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 22322 45554422222 122 44566777788888887777777774
No 499
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.96 E-value=1.2e+03 Score=27.06 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC------------------------------C--hhHHHHHHHHHHHcCCHHHHHHHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKR------------------------------D--VVSWNSMLTGCAQHGLGKATVRWF 284 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~------------------------------~--~~~~~~li~~~~~~g~~~~A~~~~ 284 (566)
..+|..+|...+|...|.+...- . ..-|-..+..+-+++..+.+.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34577889999999988865210 0 123555677777777777777777
Q ss_pred HHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHH----HHHHHHHHhhhcCCHH
Q 047067 285 EKMLRNGIAPN----QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEA----HYVTFVDLLGRAGLLD 348 (566)
Q Consensus 285 ~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~ 348 (566)
...++. +.|+ +.+++++.+-....|.+-+|...+-. .||.+ ...-++-.+..+|.++
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchH
Confidence 766664 3332 34556666666666766666655421 23322 3445555666666554
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.84 E-value=2.4e+02 Score=22.23 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=31.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 047067 166 LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSL 211 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 211 (566)
++..+...+.+-.|.++++.+.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566677888888887777666777776666666666543
Done!