Query 047067
Match_columns 566
No_of_seqs 768 out of 4074
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.4E-38 8.1E-43 336.9 38.8 416 3-426 95-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-35 3.8E-40 316.3 35.1 398 2-409 127-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 5E-29 1.7E-33 255.4 24.4 182 162-343 28-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-26 1.6E-30 228.6 41.9 343 61-411 36-387 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-25 1.5E-29 221.4 43.6 353 64-426 5-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 2.1E-27 7.2E-32 243.3 23.9 200 177-376 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.7E-22 9.2E-27 208.7 34.2 394 27-427 6-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.3E-22 7.9E-27 209.2 32.6 392 4-403 18-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.6E-26 200.0 37.2 315 59-404 27-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.3E-26 200.2 34.6 297 126-426 23-358 (450)
11 3fp2_A TPR repeat-containing p 99.9 7.3E-21 2.5E-25 199.1 33.8 410 5-427 38-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.7E-18 5.8E-23 170.8 36.5 295 129-426 3-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.3E-22 164.5 34.5 311 57-410 2-353 (359)
14 3hym_B Cell division cycle pro 99.8 5.1E-18 1.7E-22 165.4 28.8 285 126-413 19-321 (330)
15 3fp2_A TPR repeat-containing p 99.8 3.6E-18 1.2E-22 178.6 28.3 390 27-427 25-458 (537)
16 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.1E-23 170.4 21.6 293 29-357 8-308 (449)
17 2ooe_A Cleavage stimulation fa 99.8 2.7E-16 9.4E-21 164.1 40.5 403 15-426 2-492 (530)
18 3hym_B Cell division cycle pro 99.8 3.1E-17 1.1E-21 159.8 29.0 265 158-426 20-299 (330)
19 2xm6_A Protein corresponding t 99.8 7.9E-16 2.7E-20 159.0 40.5 366 25-409 37-452 (490)
20 1fch_A Peroxisomal targeting s 99.8 1.3E-17 4.5E-22 165.3 26.0 282 139-423 35-356 (368)
21 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.7E-21 164.6 31.3 370 27-437 51-470 (472)
22 2xm6_A Protein corresponding t 99.8 7.2E-15 2.5E-19 151.8 42.7 353 55-428 36-434 (490)
23 3mkr_A Coatomer subunit epsilo 99.8 4.9E-16 1.7E-20 148.5 30.5 269 138-419 8-287 (291)
24 1b89_A Protein (clathrin heavy 99.8 7.4E-19 2.5E-23 171.9 10.7 252 140-421 14-267 (449)
25 4eqf_A PEX5-related protein; a 99.8 3.7E-17 1.3E-21 162.0 22.5 260 160-422 65-352 (365)
26 2ooe_A Cleavage stimulation fa 99.8 5.6E-15 1.9E-19 154.2 37.9 385 5-395 25-495 (530)
27 3cv0_A Peroxisome targeting si 99.7 3E-16 1E-20 152.6 24.5 257 163-423 24-312 (327)
28 1fch_A Peroxisomal targeting s 99.7 3E-16 1E-20 155.5 24.3 238 129-390 98-357 (368)
29 3mkr_A Coatomer subunit epsilo 99.7 1.3E-15 4.3E-20 145.6 26.1 247 167-427 6-265 (291)
30 4eqf_A PEX5-related protein; a 99.7 6.1E-16 2.1E-20 153.3 24.2 230 194-426 64-310 (365)
31 3spa_A Mtrpol, DNA-directed RN 99.7 2E-17 6.8E-22 174.3 9.1 165 225-391 122-309 (1134)
32 1xi4_A Clathrin heavy chain; a 99.7 1.4E-13 4.9E-18 149.7 39.0 313 64-418 1055-1376(1630)
33 3cv0_A Peroxisome targeting si 99.7 1.4E-15 4.7E-20 147.8 21.5 262 129-394 21-317 (327)
34 1xi4_A Clathrin heavy chain; a 99.7 1.9E-13 6.5E-18 148.7 38.7 344 31-421 989-1340(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.7 4.4E-17 1.5E-21 171.7 9.1 151 125-275 123-286 (1134)
36 3uq3_A Heat shock protein STI1 99.6 2.1E-14 7.1E-19 134.2 22.6 225 161-426 6-236 (258)
37 3uq3_A Heat shock protein STI1 99.6 2.2E-14 7.6E-19 134.0 20.9 234 128-404 4-254 (258)
38 2pl2_A Hypothetical conserved 99.6 3.1E-14 1E-18 129.8 20.9 195 227-424 2-212 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.9E-14 2E-18 132.6 22.8 241 172-420 17-269 (275)
40 4g1t_A Interferon-induced prot 99.6 5.2E-13 1.8E-17 137.0 28.4 368 4-404 63-471 (472)
41 3u4t_A TPR repeat-containing p 99.6 1.2E-13 4.1E-18 130.4 21.0 242 131-409 5-267 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 5.7E-13 2E-17 135.6 25.3 369 5-425 16-420 (452)
43 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-12 7.2E-17 120.3 26.4 206 160-399 37-245 (252)
44 2h6f_A Protein farnesyltransfe 99.6 6.9E-13 2.4E-17 131.0 23.8 247 159-409 96-365 (382)
45 1ouv_A Conserved hypothetical 99.5 5.1E-12 1.7E-16 119.4 28.2 224 159-395 5-254 (273)
46 1ouv_A Conserved hypothetical 99.5 4.5E-12 1.5E-16 119.8 27.8 224 194-428 5-253 (273)
47 2pl2_A Hypothetical conserved 99.5 1.3E-12 4.5E-17 118.9 22.8 192 161-357 6-211 (217)
48 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4.3E-17 121.9 23.3 197 230-427 37-239 (252)
49 2q7f_A YRRB protein; TPR, prot 99.5 4.3E-13 1.5E-17 124.1 19.3 142 261-404 91-234 (243)
50 2vq2_A PILW, putative fimbrial 99.5 2.7E-12 9.1E-17 117.0 24.0 196 229-425 7-210 (225)
51 2vq2_A PILW, putative fimbrial 99.5 5.5E-12 1.9E-16 114.9 25.6 211 159-403 7-222 (225)
52 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4.2E-17 129.2 21.5 226 196-425 98-347 (382)
53 2q7f_A YRRB protein; TPR, prot 99.5 8.4E-13 2.9E-17 122.1 19.2 199 227-427 20-223 (243)
54 3e4b_A ALGK; tetratricopeptide 99.5 3.1E-12 1.1E-16 130.1 25.0 342 33-428 9-389 (452)
55 3u4t_A TPR repeat-containing p 99.5 2.1E-12 7.3E-17 121.7 21.6 225 200-427 8-251 (272)
56 4a1s_A PINS, partner of inscut 99.5 5.3E-13 1.8E-17 134.2 17.7 257 167-425 55-371 (411)
57 3sf4_A G-protein-signaling mod 99.5 1.3E-12 4.6E-17 130.8 20.3 262 163-425 12-335 (406)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.3E-13 2.8E-17 124.7 17.6 240 141-386 17-269 (275)
59 3ro2_A PINS homolog, G-protein 99.5 2.6E-12 8.8E-17 124.7 20.8 261 165-426 10-332 (338)
60 3vtx_A MAMA; tetratricopeptide 99.5 4.9E-12 1.7E-16 111.7 20.7 164 260-426 4-170 (184)
61 4abn_A Tetratricopeptide repea 99.5 8.7E-13 3E-17 135.1 17.4 193 228-423 100-318 (474)
62 3sf4_A G-protein-signaling mod 99.4 1.5E-12 5.1E-17 130.4 17.2 287 128-414 8-364 (406)
63 4e6h_A MRNA 3'-END-processing 99.4 6.9E-10 2.4E-14 117.0 35.6 416 11-428 51-572 (679)
64 3ulq_A Response regulator aspa 99.4 1.2E-11 4.1E-16 123.2 20.9 224 201-425 109-367 (383)
65 2ond_A Cleavage stimulation fa 99.4 1.7E-10 5.9E-15 111.0 28.1 218 177-397 33-275 (308)
66 4a1s_A PINS, partner of inscut 99.4 2E-12 6.9E-17 130.0 15.0 265 131-395 50-375 (411)
67 3vtx_A MAMA; tetratricopeptide 99.4 1.6E-11 5.4E-16 108.4 19.0 168 228-397 3-175 (184)
68 3nf1_A KLC 1, kinesin light ch 99.4 2.8E-12 9.6E-17 123.3 12.8 161 162-322 29-221 (311)
69 4gyw_A UDP-N-acetylglucosamine 99.4 1.4E-11 4.7E-16 131.5 19.0 163 260-425 8-173 (723)
70 3ro2_A PINS homolog, G-protein 99.4 1.3E-11 4.5E-16 119.7 17.5 263 133-395 9-335 (338)
71 3nf1_A KLC 1, kinesin light ch 99.4 2.8E-12 9.6E-17 123.3 11.7 232 194-425 26-306 (311)
72 2ond_A Cleavage stimulation fa 99.3 1.8E-10 6.2E-15 110.8 22.6 212 212-427 33-271 (308)
73 3q15_A PSP28, response regulat 99.3 1.3E-10 4.4E-15 115.5 21.7 299 126-425 7-364 (378)
74 3ulq_A Response regulator aspa 99.3 1.2E-10 4.1E-15 115.9 21.3 228 166-393 109-369 (383)
75 1hz4_A MALT regulatory protein 99.3 1.7E-09 5.8E-14 107.0 29.4 259 167-425 21-321 (373)
76 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.2E-15 101.6 18.5 160 231-426 9-173 (186)
77 4i17_A Hypothetical protein; T 99.3 2.4E-10 8.3E-15 104.6 18.5 188 229-426 6-209 (228)
78 4i17_A Hypothetical protein; T 99.2 5.7E-10 2E-14 102.0 19.9 204 193-407 5-224 (228)
79 4abn_A Tetratricopeptide repea 99.2 2.4E-10 8.3E-15 116.9 19.2 208 176-386 84-315 (474)
80 4e6h_A MRNA 3'-END-processing 99.2 1.6E-08 5.6E-13 106.5 33.4 371 55-428 63-535 (679)
81 3as5_A MAMA; tetratricopeptide 99.2 9.4E-10 3.2E-14 96.4 20.4 168 195-397 8-178 (186)
82 3q15_A PSP28, response regulat 99.2 1E-08 3.6E-13 101.5 26.9 228 165-392 106-365 (378)
83 1qqe_A Vesicular transport pro 99.2 8.7E-10 3E-14 105.1 17.6 216 144-396 32-273 (292)
84 1hz4_A MALT regulatory protein 99.2 7.8E-09 2.7E-13 102.2 25.1 262 133-394 18-324 (373)
85 1qqe_A Vesicular transport pro 99.2 2.9E-10 9.8E-15 108.5 14.0 187 238-424 45-267 (292)
86 4gyw_A UDP-N-acetylglucosamine 99.1 1E-09 3.4E-14 117.1 17.4 163 228-393 7-175 (723)
87 3edt_B KLC 2, kinesin light ch 99.1 9.3E-10 3.2E-14 103.7 15.4 220 206-425 12-280 (283)
88 3qky_A Outer membrane assembly 99.1 1.7E-08 5.7E-13 94.3 21.5 205 229-472 14-247 (261)
89 3mv2_B Coatomer subunit epsilo 99.0 6.5E-08 2.2E-12 90.7 22.0 199 139-356 23-236 (310)
90 3edt_B KLC 2, kinesin light ch 99.0 6.7E-09 2.3E-13 97.8 15.6 161 232-392 87-281 (283)
91 4ga2_A E3 SUMO-protein ligase 99.0 7.2E-10 2.5E-14 94.0 7.6 138 272-412 8-149 (150)
92 2fo7_A Synthetic consensus TPR 99.0 1.8E-08 6E-13 82.8 15.7 129 263-425 3-131 (136)
93 3mv2_B Coatomer subunit epsilo 99.0 1.6E-07 5.5E-12 88.1 23.6 174 249-426 85-282 (310)
94 2fo7_A Synthetic consensus TPR 99.0 3.3E-08 1.1E-12 81.2 17.0 123 232-356 3-128 (136)
95 2pzi_A Probable serine/threoni 99.0 2.7E-09 9.2E-14 114.2 12.7 168 241-412 402-583 (681)
96 3qou_A Protein YBBN; thioredox 99.0 2.4E-08 8.1E-13 94.8 17.9 174 248-425 104-283 (287)
97 3qky_A Outer membrane assembly 99.0 1.4E-08 4.8E-13 94.9 16.0 201 193-414 13-249 (261)
98 3rjv_A Putative SEL1 repeat pr 98.9 7.6E-08 2.6E-12 86.7 19.7 172 249-428 5-199 (212)
99 2yhc_A BAMD, UPF0169 lipoprote 98.9 7.1E-08 2.4E-12 87.9 19.4 180 230-428 4-215 (225)
100 2r5s_A Uncharacterized protein 98.9 2.7E-08 9.3E-13 86.7 13.7 76 350-425 93-172 (176)
101 2uy1_A Cleavage stimulation fa 98.8 2.5E-06 8.6E-11 87.1 29.3 200 7-224 10-242 (493)
102 2pzi_A Probable serine/threoni 98.8 1.5E-07 5.1E-12 100.7 20.7 189 206-399 402-609 (681)
103 3gyz_A Chaperone protein IPGC; 98.8 1.4E-08 4.9E-13 85.7 10.2 97 331-427 36-134 (151)
104 3dra_A Protein farnesyltransfe 98.8 1.2E-06 4.2E-11 82.8 24.3 149 275-425 124-286 (306)
105 2vsy_A XCC0866; transferase, g 98.8 4E-08 1.4E-12 103.1 15.3 159 243-404 2-169 (568)
106 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.4E-12 90.7 17.3 218 173-418 4-253 (307)
107 3urz_A Uncharacterized protein 98.8 3.3E-07 1.1E-11 82.3 18.7 126 267-396 60-190 (208)
108 3urz_A Uncharacterized protein 98.8 1.5E-07 5.2E-12 84.5 16.2 122 302-425 60-185 (208)
109 2vsy_A XCC0866; transferase, g 98.8 9.5E-08 3.3E-12 100.2 17.0 147 208-357 2-154 (568)
110 4ga2_A E3 SUMO-protein ligase 98.8 7.5E-09 2.6E-13 87.7 6.7 122 302-425 3-128 (150)
111 2vgx_A Chaperone SYCD; alterna 98.8 3.3E-08 1.1E-12 83.4 10.0 97 330-426 20-118 (148)
112 3dra_A Protein farnesyltransfe 98.8 1.1E-05 3.7E-10 76.4 27.9 227 173-404 46-300 (306)
113 3rjv_A Putative SEL1 repeat pr 98.7 8.3E-07 2.8E-11 79.8 19.4 160 159-327 17-199 (212)
114 4gco_A Protein STI-1; structur 98.7 6.5E-08 2.2E-12 79.0 10.9 99 327-425 8-109 (126)
115 3u3w_A Transcriptional activat 98.7 8.6E-07 2.9E-11 84.2 20.2 159 267-425 81-265 (293)
116 4gco_A Protein STI-1; structur 98.7 1.6E-07 5.6E-12 76.6 12.6 109 297-406 14-124 (126)
117 2r5s_A Uncharacterized protein 98.7 2.9E-07 1E-11 80.1 15.0 156 131-289 8-172 (176)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.6E-07 1.2E-11 82.0 16.1 125 299-427 9-151 (213)
119 3qou_A Protein YBBN; thioredox 98.7 3.6E-07 1.2E-11 86.5 16.1 154 234-390 121-282 (287)
120 2uy1_A Cleavage stimulation fa 98.7 1.3E-06 4.6E-11 89.2 21.1 359 39-425 6-412 (493)
121 2xcb_A PCRH, regulatory protei 98.7 1.9E-07 6.4E-12 78.1 12.2 96 331-426 18-115 (142)
122 2qfc_A PLCR protein; TPR, HTH, 98.7 8.1E-07 2.8E-11 84.4 17.5 163 263-425 77-265 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.3E-06 4.5E-11 78.3 17.8 145 233-396 9-154 (213)
124 3u3w_A Transcriptional activat 98.6 5.3E-06 1.8E-10 78.7 22.3 157 236-392 81-266 (293)
125 2ifu_A Gamma-SNAP; membrane fu 98.6 1.6E-07 5.4E-12 90.0 11.7 195 207-424 3-222 (307)
126 2c2l_A CHIP, carboxy terminus 98.6 1.4E-07 4.7E-12 89.1 10.8 189 231-426 5-199 (281)
127 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.1E-06 7.1E-11 78.0 18.1 60 130-189 5-70 (225)
128 1p5q_A FKBP52, FK506-binding p 98.6 3.8E-07 1.3E-11 88.5 13.9 144 260-424 146-292 (336)
129 1a17_A Serine/threonine protei 98.6 9.8E-07 3.4E-11 75.4 15.1 127 298-425 15-145 (166)
130 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4.1E-11 70.5 14.2 114 297-411 10-125 (125)
131 3upv_A Heat shock protein STI1 98.6 4.3E-07 1.5E-11 73.9 10.7 96 331-426 4-101 (126)
132 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4.1E-11 71.2 13.3 117 296-413 12-130 (131)
133 2lni_A Stress-induced-phosphop 98.5 1.3E-06 4.6E-11 71.3 12.9 115 297-412 17-133 (133)
134 2e2e_A Formate-dependent nitri 98.5 1E-06 3.5E-11 76.6 12.5 119 308-427 22-145 (177)
135 4f3v_A ESX-1 secretion system 98.5 8.1E-07 2.8E-11 82.2 12.3 127 266-395 107-240 (282)
136 3gw4_A Uncharacterized protein 98.5 9.9E-07 3.4E-11 78.3 12.7 78 242-319 4-89 (203)
137 2qfc_A PLCR protein; TPR, HTH, 98.5 4E-06 1.4E-10 79.6 17.4 161 232-392 77-266 (293)
138 1hxi_A PEX5, peroxisome target 98.5 5E-07 1.7E-11 73.1 9.0 94 333-426 19-114 (121)
139 3sz7_A HSC70 cochaperone (SGT) 98.5 8.8E-07 3E-11 75.9 10.7 97 330-426 10-108 (164)
140 4f3v_A ESX-1 secretion system 98.5 5.5E-06 1.9E-10 76.6 16.5 182 242-427 18-238 (282)
141 2fbn_A 70 kDa peptidylprolyl i 98.5 1.7E-07 5.8E-12 83.3 5.9 173 235-427 9-187 (198)
142 2kck_A TPR repeat; tetratricop 98.4 1.1E-06 3.9E-11 69.2 10.2 98 331-428 6-108 (112)
143 4gcn_A Protein STI-1; structur 98.4 7.8E-07 2.7E-11 72.6 9.0 94 332-425 9-111 (127)
144 3gw4_A Uncharacterized protein 98.4 2.2E-06 7.5E-11 76.0 12.8 115 141-255 4-132 (203)
145 2vgx_A Chaperone SYCD; alterna 98.4 6.7E-07 2.3E-11 75.2 8.8 104 296-400 21-126 (148)
146 3q49_B STIP1 homology and U bo 98.4 2.5E-06 8.4E-11 70.3 12.0 98 329-426 7-106 (137)
147 2lni_A Stress-induced-phosphop 98.4 2.4E-06 8.4E-11 69.7 11.9 99 328-426 13-113 (133)
148 3q7a_A Farnesyltransferase alp 98.4 4.2E-05 1.4E-09 73.1 21.5 232 162-425 56-330 (349)
149 3q7a_A Farnesyltransferase alp 98.4 0.00025 8.7E-09 67.8 26.6 250 132-402 57-342 (349)
150 2e2e_A Formate-dependent nitri 98.4 2.6E-06 9E-11 73.9 12.0 127 272-400 21-152 (177)
151 3gyz_A Chaperone protein IPGC; 98.4 1.6E-06 5.5E-11 73.0 10.0 99 298-397 38-138 (151)
152 1na0_A Designed protein CTPR3; 98.4 3.3E-06 1.1E-10 67.8 11.6 96 331-426 9-106 (125)
153 1elw_A TPR1-domain of HOP; HOP 98.4 3.8E-06 1.3E-10 66.7 11.8 96 331-426 4-101 (118)
154 2dba_A Smooth muscle cell asso 98.4 4.2E-06 1.4E-10 69.8 12.4 96 330-425 27-127 (148)
155 3dss_A Geranylgeranyl transfer 98.4 0.00016 5.5E-09 68.8 24.5 189 211-403 90-315 (331)
156 2xcb_A PCRH, regulatory protei 98.4 3E-06 1E-10 70.6 11.0 105 298-403 20-126 (142)
157 3dss_A Geranylgeranyl transfer 98.4 0.00011 3.8E-09 69.9 23.0 178 246-425 90-303 (331)
158 1a17_A Serine/threonine protei 98.4 1.7E-05 5.9E-10 67.5 16.1 94 161-256 14-107 (166)
159 1elw_A TPR1-domain of HOP; HOP 98.3 1E-05 3.5E-10 64.1 13.7 108 298-406 6-115 (118)
160 3upv_A Heat shock protein STI1 98.3 4.7E-06 1.6E-10 67.6 11.8 109 298-407 6-122 (126)
161 3sz7_A HSC70 cochaperone (SGT) 98.3 5.8E-06 2E-10 70.7 12.6 108 296-404 11-120 (164)
162 2hr2_A Hypothetical protein; a 98.3 2.7E-06 9.2E-11 71.1 9.3 91 335-425 15-130 (159)
163 2vyi_A SGTA protein; chaperone 98.3 5.5E-06 1.9E-10 67.2 10.8 97 330-426 11-109 (131)
164 2c2l_A CHIP, carboxy terminus 98.3 3.7E-06 1.3E-10 79.3 10.7 186 162-357 6-196 (281)
165 3rkv_A Putative peptidylprolyl 98.3 6.7E-06 2.3E-10 70.1 11.2 64 363-426 63-126 (162)
166 3q49_B STIP1 homology and U bo 98.2 1E-05 3.4E-10 66.6 11.5 100 295-395 8-109 (137)
167 2xev_A YBGF; tetratricopeptide 98.2 6E-06 2.1E-10 67.1 10.0 91 336-426 7-105 (129)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.2E-05 4E-10 81.5 13.7 144 261-425 268-414 (457)
169 1wao_1 Serine/threonine protei 98.2 1.4E-05 4.9E-10 81.3 13.9 83 239-323 15-101 (477)
170 2dba_A Smooth muscle cell asso 98.2 3.1E-05 1E-09 64.4 13.6 78 331-408 65-144 (148)
171 1wao_1 Serine/threonine protei 98.2 5.3E-06 1.8E-10 84.5 9.8 116 305-421 15-134 (477)
172 1p5q_A FKBP52, FK506-binding p 98.2 3.4E-05 1.1E-09 74.7 15.1 149 144-315 128-283 (336)
173 2fbn_A 70 kDa peptidylprolyl i 98.2 7.3E-06 2.5E-10 72.6 9.5 161 134-316 9-176 (198)
174 3k9i_A BH0479 protein; putativ 98.1 2E-06 6.8E-11 68.9 5.2 84 343-426 2-90 (117)
175 1elr_A TPR2A-domain of HOP; HO 98.1 8.3E-06 2.8E-10 66.1 8.9 96 331-426 4-108 (131)
176 4b4t_Q 26S proteasome regulato 98.1 3.5E-05 1.2E-09 77.3 15.4 162 264-425 58-244 (434)
177 2kck_A TPR repeat; tetratricop 98.1 2E-05 6.8E-10 61.8 10.6 97 300-397 10-111 (112)
178 1elr_A TPR2A-domain of HOP; HO 98.1 1.5E-05 5E-10 64.6 10.1 114 263-408 6-123 (131)
179 1ihg_A Cyclophilin 40; ppiase 98.1 2E-05 6.7E-10 77.4 12.7 139 261-419 223-363 (370)
180 4gcn_A Protein STI-1; structur 98.1 4.7E-05 1.6E-09 61.8 12.3 26 264-289 86-111 (127)
181 3ro3_A PINS homolog, G-protein 98.1 2E-05 7E-10 66.4 10.6 133 262-425 10-157 (164)
182 1dce_A Protein (RAB geranylger 98.1 0.00025 8.6E-09 73.5 20.6 168 246-415 45-244 (567)
183 1hxi_A PEX5, peroxisome target 98.1 1.9E-05 6.5E-10 63.6 9.5 96 301-397 22-119 (121)
184 3rkv_A Putative peptidylprolyl 98.1 1.7E-05 5.8E-10 67.6 9.5 122 261-406 11-141 (162)
185 3k9i_A BH0479 protein; putativ 98.0 5.2E-06 1.8E-10 66.5 5.0 92 309-400 3-98 (117)
186 2xev_A YBGF; tetratricopeptide 98.0 9.9E-05 3.4E-09 59.7 12.9 69 333-401 41-114 (129)
187 2hr2_A Hypothetical protein; a 98.0 2.1E-05 7.2E-10 65.7 8.6 69 333-401 59-140 (159)
188 2if4_A ATFKBP42; FKBP-like, al 98.0 2.1E-05 7.3E-10 76.2 10.1 147 262-427 180-329 (338)
189 4b4t_Q 26S proteasome regulato 98.0 0.00032 1.1E-08 70.2 19.1 95 263-357 137-242 (434)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.5E-10 77.0 8.5 114 297-426 180-293 (338)
191 3n71_A Histone lysine methyltr 98.0 3.6E-05 1.2E-09 78.0 11.3 122 306-427 319-465 (490)
192 2l6j_A TPR repeat-containing p 97.9 1.8E-05 6E-10 62.2 7.1 92 330-421 3-102 (111)
193 3ro3_A PINS homolog, G-protein 97.9 5.2E-05 1.8E-09 63.8 10.2 91 230-320 9-113 (164)
194 3ma5_A Tetratricopeptide repea 97.9 6.1E-05 2.1E-09 58.1 9.0 65 362-426 6-70 (100)
195 1zu2_A Mitochondrial import re 97.9 9.8E-06 3.4E-10 67.5 4.2 86 342-427 13-121 (158)
196 1ihg_A Cyclophilin 40; ppiase 97.9 9.1E-05 3.1E-09 72.6 11.9 65 362-426 272-336 (370)
197 2kat_A Uncharacterized protein 97.9 4.1E-05 1.4E-09 60.8 7.8 78 349-426 3-82 (115)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00017 5.7E-09 73.0 14.2 97 331-427 268-381 (457)
199 1na3_A Designed protein CTPR2; 97.8 8.6E-05 2.9E-09 55.7 9.1 82 330-411 8-91 (91)
200 3n71_A Histone lysine methyltr 97.7 0.00013 4.3E-09 73.9 10.7 116 339-472 317-450 (490)
201 3qwp_A SET and MYND domain-con 97.7 0.00017 5.8E-09 71.9 10.2 116 338-471 294-427 (429)
202 3bee_A Putative YFRE protein; 97.6 0.00033 1.1E-08 53.0 9.0 68 361-428 4-74 (93)
203 2l6j_A TPR repeat-containing p 97.6 0.00028 9.4E-09 55.1 8.3 67 361-427 2-68 (111)
204 3qww_A SET and MYND domain-con 97.5 0.00018 6.1E-09 71.6 8.0 83 343-425 310-410 (433)
205 1klx_A Cysteine rich protein B 97.5 0.0012 4.1E-08 54.2 11.7 90 337-428 31-128 (138)
206 1dce_A Protein (RAB geranylger 97.5 0.0019 6.5E-08 66.9 15.7 150 274-426 42-221 (567)
207 1zu2_A Mitochondrial import re 97.4 0.00018 6E-09 60.0 5.2 100 272-397 13-125 (158)
208 1na3_A Designed protein CTPR2; 97.3 0.00068 2.3E-08 50.5 7.8 65 362-426 8-72 (91)
209 1klx_A Cysteine rich protein B 97.2 0.007 2.4E-07 49.5 13.6 108 175-290 10-126 (138)
210 2kat_A Uncharacterized protein 97.2 0.0013 4.4E-08 51.8 8.2 66 330-395 18-85 (115)
211 3ly7_A Transcriptional activat 97.1 0.008 2.7E-07 57.4 14.1 142 257-425 190-338 (372)
212 3qww_A SET and MYND domain-con 97.1 0.0032 1.1E-07 62.5 11.2 91 309-399 311-423 (433)
213 1pc2_A Mitochondria fission pr 96.9 0.0061 2.1E-07 50.1 10.0 66 360-425 29-99 (152)
214 3qwp_A SET and MYND domain-con 96.9 0.0076 2.6E-07 59.9 12.8 98 304-401 295-414 (429)
215 2kc7_A BFR218_protein; tetratr 96.9 0.0022 7.7E-08 48.7 6.9 61 339-399 8-71 (99)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0059 2E-07 46.2 8.9 54 303-357 7-61 (99)
217 3mkq_A Coatomer beta'-subunit; 96.8 0.063 2.2E-06 58.3 19.8 102 137-255 660-761 (814)
218 3ma5_A Tetratricopeptide repea 96.7 0.009 3.1E-07 45.6 8.8 58 261-319 7-64 (100)
219 3mkq_A Coatomer beta'-subunit; 96.6 0.1 3.5E-06 56.6 19.7 47 240-288 662-708 (814)
220 3u64_A Protein TP_0956; tetrat 96.5 0.0093 3.2E-07 54.6 8.9 87 347-433 179-276 (301)
221 3lvg_A Clathrin heavy chain 1; 96.3 0.00039 1.3E-08 67.8 -1.4 238 26-282 53-325 (624)
222 2v5f_A Prolyl 4-hydroxylase su 96.3 0.026 8.9E-07 43.4 9.4 74 330-403 4-86 (104)
223 3mkq_B Coatomer subunit alpha; 96.2 0.15 5E-06 43.0 14.0 130 237-389 12-141 (177)
224 3ly7_A Transcriptional activat 96.1 0.069 2.4E-06 51.0 12.8 38 390-427 270-307 (372)
225 3bee_A Putative YFRE protein; 96.1 0.035 1.2E-06 41.6 8.7 70 328-397 3-77 (93)
226 1pc2_A Mitochondria fission pr 95.9 0.049 1.7E-06 44.7 9.3 71 329-399 30-107 (152)
227 1wy6_A Hypothetical protein ST 95.8 0.52 1.8E-05 37.3 17.2 140 272-429 18-157 (172)
228 1qsa_A Protein (soluble lytic 95.7 2.3 8E-05 43.9 27.5 251 131-391 74-347 (618)
229 3mkq_B Coatomer subunit alpha; 95.6 0.79 2.7E-05 38.5 15.9 104 137-257 13-116 (177)
230 1nzn_A CGI-135 protein, fissio 95.1 0.15 5.2E-06 40.2 9.1 65 361-425 33-102 (126)
231 3u64_A Protein TP_0956; tetrat 94.3 0.59 2E-05 42.8 12.4 113 243-357 134-266 (301)
232 4gns_B Protein CSD3, chitin bi 94.3 0.42 1.4E-05 50.5 12.9 54 371-424 345-398 (754)
233 2v5f_A Prolyl 4-hydroxylase su 94.0 0.23 8E-06 37.8 8.1 65 362-426 4-75 (104)
234 1y8m_A FIS1; mitochondria, unk 93.8 2.1 7.3E-05 34.3 13.3 66 360-425 36-105 (144)
235 4h7y_A Dual specificity protei 93.3 0.19 6.6E-06 40.6 6.3 54 375-428 72-125 (161)
236 1nzn_A CGI-135 protein, fissio 92.4 1.6 5.5E-05 34.3 10.4 72 329-400 33-111 (126)
237 1wy6_A Hypothetical protein ST 90.3 5.8 0.0002 31.5 14.6 139 172-328 19-157 (172)
238 2ff4_A Probable regulatory pro 90.3 0.66 2.3E-05 45.2 7.8 67 367-433 175-246 (388)
239 3lpz_A GET4 (YOR164C homolog); 90.2 12 0.00041 35.0 20.2 136 28-174 36-181 (336)
240 4h7y_A Dual specificity protei 90.0 1.6 5.6E-05 35.3 8.4 112 257-397 9-128 (161)
241 3o48_A Mitochondria fission 1 89.8 1.9 6.5E-05 34.1 8.5 47 379-425 59-106 (134)
242 3lvg_A Clathrin heavy chain 1; 88.1 2.8E-05 9.5E-10 75.6 -24.1 259 130-423 55-317 (624)
243 2wpv_A GET4, UPF0363 protein Y 86.8 20 0.00068 33.3 19.8 136 27-173 33-178 (312)
244 4fhn_B Nucleoporin NUP120; pro 86.5 19 0.00064 40.6 17.4 164 133-314 816-989 (1139)
245 2uwj_G Type III export protein 85.3 9.5 0.00033 28.2 9.4 83 112-199 24-106 (115)
246 2p58_C Putative type III secre 84.8 10 0.00034 28.1 9.8 82 112-198 25-106 (116)
247 2uwj_G Type III export protein 84.7 10 0.00035 28.1 9.5 86 210-300 21-106 (115)
248 3ffl_A Anaphase-promoting comp 84.5 7.5 0.00026 32.1 9.5 112 236-360 26-151 (167)
249 4fhn_B Nucleoporin NUP120; pro 84.1 49 0.0017 37.2 19.4 31 126-156 839-869 (1139)
250 2p58_C Putative type III secre 84.1 11 0.00037 28.0 10.1 86 210-300 22-107 (116)
251 3lpz_A GET4 (YOR164C homolog); 83.3 30 0.001 32.4 22.2 163 131-319 37-210 (336)
252 2wpv_A GET4, UPF0363 protein Y 83.2 29 0.00099 32.1 21.3 133 130-273 34-177 (312)
253 1v54_E Cytochrome C oxidase po 82.5 8.7 0.0003 28.6 8.0 63 276-339 25-87 (109)
254 4gns_B Protein CSD3, chitin bi 81.8 8.4 0.00029 40.7 11.1 52 205-257 347-398 (754)
255 3ffl_A Anaphase-promoting comp 81.4 7.7 0.00026 32.0 8.4 26 398-423 123-148 (167)
256 4b4t_P 26S proteasome regulato 80.5 46 0.0016 32.7 16.4 184 173-357 29-244 (445)
257 2ff4_A Probable regulatory pro 78.3 18 0.00061 34.9 11.7 67 266-333 176-247 (388)
258 4ady_A RPN2, 26S proteasome re 78.2 82 0.0028 34.2 23.7 20 169-188 533-552 (963)
259 1y8m_A FIS1; mitochondria, unk 76.7 27 0.00093 27.9 11.8 70 329-398 37-112 (144)
260 3o48_A Mitochondria fission 1 74.9 26 0.00089 27.6 9.3 34 365-398 80-113 (134)
261 1wdy_A 2-5A-dependent ribonucl 74.5 16 0.00056 32.7 9.9 116 31-156 6-129 (285)
262 1v54_E Cytochrome C oxidase po 73.8 25 0.00087 26.2 9.8 56 349-404 28-86 (109)
263 2y69_E Cytochrome C oxidase su 73.5 16 0.00054 28.9 7.5 62 277-339 69-130 (152)
264 2qx5_A Nucleoporin NIC96; mRNA 72.8 93 0.0032 32.3 15.9 80 166-256 300-382 (661)
265 1zbp_A Hypothetical protein VP 72.5 8.5 0.00029 34.6 6.8 57 340-396 6-64 (273)
266 3mv2_A Coatomer subunit alpha; 71.4 44 0.0015 30.9 11.4 56 358-427 200-257 (325)
267 3ltm_A Alpha-REP4; protein eng 69.1 53 0.0018 27.9 19.0 60 228-288 124-183 (211)
268 3ltj_A Alpharep-4; protein eng 69.1 51 0.0017 27.7 19.6 50 24-73 25-74 (201)
269 3txn_A 26S proteasome regulato 67.5 90 0.0031 30.0 17.1 23 267-289 105-127 (394)
270 2y69_E Cytochrome C oxidase su 62.1 57 0.0019 25.8 9.8 49 356-404 81-129 (152)
271 1zbp_A Hypothetical protein VP 60.8 94 0.0032 27.9 12.3 50 272-322 8-57 (273)
272 2qx5_A Nucleoporin NIC96; mRNA 58.3 1.8E+02 0.006 30.2 15.1 32 331-362 533-569 (661)
273 3ltm_A Alpha-REP4; protein eng 58.3 84 0.0029 26.5 19.4 110 126-243 92-201 (211)
274 2nsz_A Programmed cell death p 57.7 66 0.0023 25.1 9.0 64 132-195 10-78 (129)
275 4b4t_R RPN7, 26S proteasome re 57.3 24 0.00083 34.5 7.6 60 298-357 133-194 (429)
276 4b4t_R RPN7, 26S proteasome re 56.9 59 0.002 31.7 10.3 88 232-319 133-231 (429)
277 1wdy_A 2-5A-dependent ribonucl 56.2 21 0.00072 32.0 6.6 17 138-154 11-27 (285)
278 2nsz_A Programmed cell death p 55.2 49 0.0017 25.9 7.6 62 234-295 11-77 (129)
279 1oyz_A Hypothetical protein YI 52.8 1.3E+02 0.0043 26.9 20.0 16 127-142 103-118 (280)
280 1k1a_A B-cell lymphoma 3-encod 51.1 40 0.0014 29.2 7.5 18 138-155 85-102 (241)
281 1oyz_A Hypothetical protein YI 50.9 1.3E+02 0.0046 26.6 20.3 18 228-245 140-157 (280)
282 2ion_A PDCD4, programmed cell 50.1 63 0.0021 26.2 7.6 64 132-195 12-80 (152)
283 4b4t_S RPN3, 26S proteasome re 50.1 2.1E+02 0.0071 28.6 12.8 178 229-428 230-431 (523)
284 3kea_A K1L; tropism, ANK repea 49.9 37 0.0013 30.7 7.2 19 34-52 35-53 (285)
285 4b4t_P 26S proteasome regulato 47.9 2.1E+02 0.0071 27.9 23.7 194 143-355 30-262 (445)
286 2ion_A PDCD4, programmed cell 46.5 46 0.0016 27.0 6.3 61 234-294 13-78 (152)
287 3kea_A K1L; tropism, ANK repea 45.5 53 0.0018 29.7 7.5 93 336-432 131-223 (285)
288 3esl_A Checkpoint serine/threo 45.2 1.4E+02 0.0049 25.4 13.7 104 349-478 62-171 (202)
289 1n11_A Ankyrin; clathrin, BAND 44.9 81 0.0028 30.5 9.3 112 33-154 17-135 (437)
290 3mkr_B Coatomer subunit alpha; 44.0 74 0.0025 29.4 7.9 58 357-428 190-249 (320)
291 1qsa_A Protein (soluble lytic 43.8 2.9E+02 0.0098 28.4 38.8 363 31-431 76-484 (618)
292 4gq2_M Nucleoporin NUP120; bet 42.4 3E+02 0.01 30.1 13.9 85 302-391 816-925 (950)
293 3ltj_A Alpharep-4; protein eng 42.2 1.5E+02 0.0051 24.7 21.3 80 128-211 27-106 (201)
294 3eiq_C Programmed cell death p 40.0 2.4E+02 0.0083 26.5 14.9 80 264-344 220-301 (358)
295 2lo3_A SAGA-associated factor 39.2 12 0.0004 22.4 1.1 12 522-533 16-27 (44)
296 2l0z_A Glycoprotein G2; zinc-b 38.3 10 0.00036 22.4 0.8 13 553-565 16-29 (42)
297 1k1a_A B-cell lymphoma 3-encod 37.7 83 0.0028 27.0 7.4 18 138-155 122-139 (241)
298 1ug3_A EIF4GI, eukaryotic prot 37.2 2.3E+02 0.0077 26.4 10.5 92 132-223 14-113 (339)
299 2d2s_A Exocyst complex compone 37.0 1.5E+02 0.0051 26.0 8.6 28 329-356 89-116 (235)
300 2k0q_A Putative uncharacterize 35.2 11 0.00038 25.5 0.7 22 542-563 8-29 (74)
301 3hra_A Ankyrin repeat family p 34.7 1.2E+02 0.0041 25.1 7.7 52 36-92 11-66 (201)
302 3eu9_A Huntingtin-interacting 34.6 86 0.0029 26.8 6.9 17 37-53 16-32 (240)
303 1bpo_A Protein (clathrin); cla 34.4 3.4E+02 0.012 26.6 11.0 71 18-88 352-425 (494)
304 3esl_A Checkpoint serine/threo 33.2 2.3E+02 0.0077 24.1 11.5 67 263-330 82-149 (202)
305 2d2s_A Exocyst complex compone 32.6 1.5E+02 0.0052 25.9 7.9 21 167-187 25-45 (235)
306 3bqo_A Telomeric repeat-bindin 32.5 2.3E+02 0.0079 24.0 8.5 59 347-405 94-159 (211)
307 3jxi_A Vanilloid receptor-rela 32.1 51 0.0018 29.0 5.0 53 67-120 11-72 (260)
308 4a1g_A Mitotic checkpoint seri 32.0 2E+02 0.0069 23.2 9.5 49 382-430 84-134 (152)
309 3ygs_P Procaspase 9; apoptosis 31.6 69 0.0024 23.5 4.7 38 244-281 51-88 (97)
310 3eu9_A Huntingtin-interacting 31.5 73 0.0025 27.3 5.9 19 136-154 80-98 (240)
311 2r9g_A AAA ATPase, central reg 30.4 2.5E+02 0.0086 23.8 10.0 43 267-310 17-62 (204)
312 2fe3_A Peroxide operon regulat 30.4 1.3E+02 0.0043 24.0 6.5 43 62-104 25-67 (145)
313 3ygs_P Procaspase 9; apoptosis 29.8 60 0.0021 23.8 4.1 38 143-180 51-88 (97)
314 4ady_A RPN2, 26S proteasome re 29.6 5.8E+02 0.02 27.7 29.6 248 139-390 384-656 (963)
315 2zu6_B Programmed cell death p 29.1 3.4E+02 0.012 24.9 13.4 27 132-158 6-32 (307)
316 4b4t_S RPN3, 26S proteasome re 28.2 1.6E+02 0.0055 29.4 7.9 62 296-357 231-296 (523)
317 2fe3_A Peroxide operon regulat 27.9 1.9E+02 0.0066 22.8 7.2 39 167-205 28-66 (145)
318 4gq2_M Nucleoporin NUP120; bet 27.8 4.6E+02 0.016 28.5 12.4 121 135-275 816-950 (950)
319 2wvi_A Mitotic checkpoint seri 27.7 2.5E+02 0.0086 22.9 9.3 49 382-430 79-129 (164)
320 2pk8_A Uncharacterized protein 27.5 51 0.0017 23.8 3.0 29 454-482 13-41 (103)
321 3bge_A Predicted ATPase; struc 27.3 2.3E+02 0.008 23.9 7.5 46 165-210 9-57 (201)
322 2r9g_A AAA ATPase, central reg 27.0 2.9E+02 0.0099 23.4 8.1 55 171-226 25-84 (204)
323 2zu6_B Programmed cell death p 26.4 3.8E+02 0.013 24.5 12.0 57 30-86 6-66 (307)
324 1bpo_A Protein (clathrin); cla 25.8 4.8E+02 0.016 25.6 12.8 132 117-257 349-483 (494)
325 1n11_A Ankyrin; clathrin, BAND 25.7 2.7E+02 0.0092 26.6 9.4 52 341-393 252-305 (437)
326 2xig_A Ferric uptake regulatio 25.5 1.7E+02 0.0058 23.4 6.5 42 62-103 30-71 (150)
327 3aji_A 26S proteasome non-ATPa 24.7 2.3E+02 0.008 23.8 8.0 54 34-92 10-67 (231)
328 2xig_A Ferric uptake regulatio 24.7 2.7E+02 0.0091 22.2 7.6 38 167-204 33-70 (150)
329 1mzb_A Ferric uptake regulatio 23.9 2E+02 0.0068 22.4 6.5 41 62-102 21-62 (136)
330 3txn_A 26S proteasome regulato 23.9 4.8E+02 0.016 24.9 29.5 280 132-428 22-345 (394)
331 3jxi_A Vanilloid receptor-rela 23.4 93 0.0032 27.2 5.1 53 169-221 11-72 (260)
332 4ets_A Ferric uptake regulatio 23.2 1.4E+02 0.0048 24.3 5.6 44 100-144 39-84 (162)
333 2p1h_A APAF-1, apoptotic prote 23.1 2.1E+02 0.0072 20.5 6.9 38 142-179 49-86 (94)
334 2rfa_A Transient receptor pote 22.4 2.3E+02 0.0077 24.0 7.4 19 34-52 7-25 (232)
335 3bge_A Predicted ATPase; struc 22.0 3.6E+02 0.012 22.8 9.1 44 267-310 10-56 (201)
336 3ljn_A Hypothetical protein; a 21.7 1.7E+02 0.0059 27.1 6.9 187 97-295 21-238 (364)
337 4ets_A Ferric uptake regulatio 21.5 1.8E+02 0.0062 23.6 6.0 70 278-348 14-86 (162)
338 2o03_A Probable zinc uptake re 21.2 1.8E+02 0.0063 22.5 5.8 48 63-110 15-62 (131)
339 2yru_A Steroid receptor RNA ac 21.0 1.3E+02 0.0044 23.1 4.5 43 182-224 48-90 (118)
340 3qye_A TBC1 domain family memb 20.8 4.9E+02 0.017 23.9 11.0 46 182-227 210-255 (331)
341 3ctd_A Putative ATPase, AAA fa 20.7 4E+02 0.014 22.8 9.0 45 266-310 37-84 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-38 Score=336.92 Aligned_cols=416 Identities=12% Similarity=0.015 Sum_probs=369.2
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC--CCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067 3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM--PVKDMVTWTALISGYSQNDQPENAIIL 80 (566)
Q Consensus 3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l 80 (566)
.+.|++++|..++..+++. .|+..++..++..|.+.|++++|..+|+.+ ..+++.+|+.++.+|.+.|++++|+++
T Consensus 95 ~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 4568899999999999864 567788999999999999999999999998 477899999999999999999999999
Q ss_pred HHHHHH-C--------------CCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhH--------------
Q 047067 81 FSQMLR-L--------------GLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYV-------------- 131 (566)
Q Consensus 81 ~~~m~~-~--------------g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~-------------- 131 (566)
|+++.. . |.+++..+|+.+..++.+.|+.+ .+..++..+.+.+.. +...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD-RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHH
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchh
Confidence 985322 1 23345789999999999999999 999999999887522 2222
Q ss_pred ------------------------HHHHHHHHHhcCCHHHHHHHHHhCCC--CChHHHHHHHHHHHhCCChhHHHHHHHH
Q 047067 132 ------------------------GSSLLDMYARFDQMDDAWFLFTALES--KNEVSWNALIAGHARKSEGEKALRTFSE 185 (566)
Q Consensus 132 ------------------------~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 185 (566)
++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33346677889999999999999988 7999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChh
Q 047067 186 MLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVV 262 (566)
Q Consensus 186 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 262 (566)
|.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..
T Consensus 331 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 331 ILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 99865 3477889999999999999999999999999765 6678899999999999999999999999874 45788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG 342 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (566)
+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 99999999999999999999999999863 3478999999999999999999999997777654 447889999999999
Q ss_pred hcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 047067 343 RAGLLDRALKFIREM-------PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL 413 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 413 (566)
+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|++.++++++.+|+++.+|..++.+|.+.|++
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 999999999999988 45787 789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 047067 414 NDAARARKMMKES 426 (566)
Q Consensus 414 ~~a~~~~~~m~~~ 426 (566)
++|.+.++++.+.
T Consensus 567 ~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 567 GLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-35 Score=316.33 Aligned_cols=398 Identities=9% Similarity=-0.014 Sum_probs=348.0
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC-------------------CcchHH
Q 047067 2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK-------------------DMVTWT 62 (566)
Q Consensus 2 c~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~ 62 (566)
|.+.|++++|..+|..++.. ++++.+++.++.+|.++|++++|+++|+++.+. ++.+|+
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY 204 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHH
Confidence 44678999999999988653 688999999999999999999999999965433 478999
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHHHH--------------------------------------HHHH
Q 047067 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLSSV--------------------------------------LKAS 103 (566)
Q Consensus 63 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l--------------------------------------l~a~ 103 (566)
.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+ +..|
T Consensus 205 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 205 LRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999853 4432 22222 3344
Q ss_pred ccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHH
Q 047067 104 GAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKAL 180 (566)
Q Consensus 104 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 180 (566)
.+.|+.+ .+..++..+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.
T Consensus 283 ~~~g~~~-~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 283 SHEDELR-RAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTHHHHH-HHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred cCcchHH-HHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 5566677 788888877765 58999999999999999999999999999863 47889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 047067 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL--- 257 (566)
Q Consensus 181 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 257 (566)
++|+++.... +.+..++..++..+.+.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998653 5578899999999999999999999999999875 5578899999999999999999999999873
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhh----CCCcc--H
Q 047067 258 KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH----GVEPE--E 331 (566)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~p~--~ 331 (566)
..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..|.+.|++++|.++|+.+.+. +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 3478999999999999999999999999999863 347899999999999999999999999777665 66787 7
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS 409 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 409 (566)
.+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|.+.++++++++|+++.++..++++|..
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999999999988 3345 789999999999999999999999999999999999999999888753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5e-29 Score=255.36 Aligned_cols=182 Identities=12% Similarity=0.131 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCcHhH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS---------LEQGKWVHAHVIKSGGQLVAFV 232 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 232 (566)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777777777777777777777777777777777777765543 4667777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067 233 GNTLVDMYAKSGSIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308 (566)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 308 (566)
|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 7777777777777777777777773 457777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh
Q 047067 309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR 343 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 343 (566)
.|++++|.++++.|.+.+..|+..+|+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777776654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.5e-26 Score=228.63 Aligned_cols=343 Identities=10% Similarity=0.033 Sum_probs=221.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047067 61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYA 140 (566)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~ 140 (566)
+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|+.+ .+...+..+.+.. +.+...+..+...|.
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ-EAIEHYRHALRLK-PDFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH-HHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 3333334444444444444444433321 223333444444444444444 4444444443332 223334555556666
Q ss_pred hcCCHHHHHHHHHhCCC--C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067 141 RFDQMDDAWFLFTALES--K-NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV 217 (566)
Q Consensus 141 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 217 (566)
+.|++++|.+.|+++.+ | +...|..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666655442 2 34455666666666666667766666666542 22345666666666677777777777
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047067 218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP 294 (566)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (566)
++++++.. +.+...+..+...+...|++++|...|++.. ..+..+|+.+...|...|++++|+..|+++.+. .|
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 268 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP 268 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 77766654 3445566677777777777777777777652 335677777888888888888888888888774 33
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047067 295 -NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLG 371 (566)
Q Consensus 295 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 371 (566)
+..++..+..++.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+..
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 45677788888888888888888886665543 456777888888888888888888888877 4445 4578888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067 372 ACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG 411 (566)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 411 (566)
++...|++++|...++++++++|+++.++..++.+|...|
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 8888888888888888888888888888888888877665
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.4e-25 Score=221.40 Aligned_cols=353 Identities=17% Similarity=0.114 Sum_probs=306.8
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 047067 64 LISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARF 142 (566)
Q Consensus 64 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 142 (566)
+...+.+.|++++|++.|.++.+. .|+.. .+..+...+...++.+ .+...+...++.. +.+..++..+...|.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~-~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 345677889999999999998875 45544 4555556677888888 8888888888764 56788999999999999
Q ss_pred CCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 047067 143 DQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQGKWVH 218 (566)
Q Consensus 143 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~ 218 (566)
|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|...+
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999998753 35678999999999999999999999999885 354 456677788889999999999999
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 047067 219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP- 294 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 294 (566)
.++++.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .|
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC
Confidence 9999886 5567889999999999999999999999984 346778999999999999999999999999885 45
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047067 295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGA 372 (566)
Q Consensus 295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 372 (566)
+..++..+..++...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|.+.++++ .. .++..+|..+...
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 57889999999999999999999997776643 335678999999999999999999999988 22 3477899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+...|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999863
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.1e-27 Score=243.33 Aligned_cols=200 Identities=11% Similarity=0.120 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC---------H
Q 047067 177 EKALRTFSEMLREGFEPTH-FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS---------I 246 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 246 (566)
..+..+.+++.+.++.+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777766544 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhc----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhH
Q 047067 247 EDAEKVFNRL----LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALM 322 (566)
Q Consensus 247 ~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 322 (566)
++|.++|++| ..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 047067 323 KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMH 376 (566)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 376 (566)
.+.|+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999 7899999999999988754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-22 Score=208.69 Aligned_cols=394 Identities=13% Similarity=-0.003 Sum_probs=318.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG 104 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 104 (566)
...+..+...|.+.|++++|...|+++. .||...|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 3456677888999999999999999876 5788899999999999999999999999998864 344568888999999
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH-------------------------------
Q 047067 105 AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFT------------------------------- 153 (566)
Q Consensus 105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~------------------------------- 153 (566)
..|+.+ .+...+..+.+.+ +++......++..+.+......+.+.+.
T Consensus 85 ~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFA-DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHH-HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHH-HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999 9999999998876 3344444444444444332222222221
Q ss_pred -------hCC----------CCChHHHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCC--------CCHHHHHH
Q 047067 154 -------ALE----------SKNEVSWNALIAGHAR---KSEGEKALRTFSEMLR-----EGFE--------PTHFSYSS 200 (566)
Q Consensus 154 -------~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------pd~~t~~~ 200 (566)
... ..+...|......+.. .|++++|+..|+++.. ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 110 0124455555555554 8999999999999987 3112 23457778
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCH
Q 047067 201 VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLG 277 (566)
Q Consensus 201 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 277 (566)
+...+...|++++|...+..+++.... ..++..+..+|...|++++|...|+++.. .+..+|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888999999999999999999998744 88889999999999999999999998743 4678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999853 2356788899999999999999999997666543 335678889999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 358 ----PIEPT----AAVWGALLGACRM---HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 358 ----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+-.|+ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22333 4488999999999 999999999999999999999999999999999999999999999999874
Q ss_pred C
Q 047067 427 G 427 (566)
Q Consensus 427 g 427 (566)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.3e-22 Score=209.17 Aligned_cols=392 Identities=12% Similarity=-0.019 Sum_probs=310.8
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHH
Q 047067 4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIIL 80 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 80 (566)
+.|++++|...+..+++.. |++.++..+...|.+.|++++|...|+++. +.+...|..+..+|.+.|++++|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5689999999999999986 689999999999999999999999999765 44667899999999999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHH-----------------------------------HHHHHhCC
Q 047067 81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVH-----------------------------------AFCLKYGY 125 (566)
Q Consensus 81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~-----------------------------------~~~~~~g~ 125 (566)
|+++.+.+ +++......++..+....... .....+ ..+.....
T Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 96 LSVLSLNG-DFNDASIEPMLERNLNKQAMS-KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHSS-SCCGGGTHHHHHHHHHHHHHH-HHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHhcC-CCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 99999875 344444444443332111100 000000 00000000
Q ss_pred ---------CCchhHHHHHHHHHHh---cCCHHHHHHHHHhCCC----------------C-ChHHHHHHHHHHHhCCCh
Q 047067 126 ---------DWNVYVGSSLLDMYAR---FDQMDDAWFLFTALES----------------K-NEVSWNALIAGHARKSEG 176 (566)
Q Consensus 126 ---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~ 176 (566)
+.+...+..+...+.. .|++++|...|+++.+ + +..+|..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 1124444445554554 8999999999988654 1 356888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047067 177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL 256 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (566)
++|+..|+++.... |+..++..+...+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|+++
T Consensus 254 ~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998864 448888899999999999999999999998875 456778899999999999999999999987
Q ss_pred C---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-Ccc--
Q 047067 257 L---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPE-- 330 (566)
Q Consensus 257 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~-- 330 (566)
. ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+..... .++
T Consensus 331 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 3 3467889999999999999999999999998853 33567888999999999999999999965554321 222
Q ss_pred --HHHHHHHHHHhhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067 331 --EAHYVTFVDLLGR---AGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILL 403 (566)
Q Consensus 331 --~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 403 (566)
...+..+...|.+ .|++++|...++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3478889999999 99999999999987 3344 567889999999999999999999999999999987766655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.3e-21 Score=199.96 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=146.4
Q ss_pred chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047067 59 VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDM 138 (566)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~ 138 (566)
..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+.+ .+...+..+++.+ +.+..++..+..+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSK-AALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344444444444555555555554444321 112233333333333333333 3333333333322 2233445555556
Q ss_pred HHhcCCHHHHHHHHHhCCCC---Ch---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067 139 YARFDQMDDAWFLFTALESK---NE---VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE 212 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 212 (566)
|.+.|++++|.+.|+++.+. +. ..|..++..+... .+..+...+...|+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCHH
Confidence 66666666666666655432 22 4444443321000 0111122233344444
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
+|...+..+++.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|+.+...|...|++++|+..|+++.+
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444432 2334444444455555555555555554442 22444555555555555555555555555554
Q ss_pred cCCCCCH-HHHHHH------------HHHHHccCCHHHHHHHHHhHHhhCCCcc-----HHHHHHHHHHhhhcCCHHHHH
Q 047067 290 NGIAPNQ-VTFLCV------------LTACSHAGLLDEGQGYFALMKKHGVEPE-----EAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 290 ~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~ 351 (566)
. .|+. ..+..+ ..+|.+.|++++|...|..+.... |+ ..+|..+..++.+.|++++|.
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 2322 222222 455555566666666664443322 22 235555566666666666666
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 352 KFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 352 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
..++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..++
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 666554 2233 4456666666666666666666666666666666655555555
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.3e-21 Score=200.18 Aligned_cols=297 Identities=13% Similarity=0.066 Sum_probs=246.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047067 126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVF 202 (566)
Q Consensus 126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 202 (566)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44667788888888888888888888887653 467788888888888888888888888888754 33567788888
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCChhHH
Q 047067 203 TALASTGSLEQGKWVHAHVIKSGGQLVA---FVGNTL------------VDMYAKSGSIEDAEKVFNRLL---KRDVVSW 264 (566)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 264 (566)
.++...|++++|...++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+++. ..+..+|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 88888888888888888888764 2333 444444 445999999999999999874 4578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHH-------
Q 047067 265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF------- 337 (566)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l------- 337 (566)
..++..|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+.+.... +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 999999999999999999999998853 3468899999999999999999999997766543 2234444444
Q ss_pred -----HHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 338 -----VDLLGRAGLLDRALKFIREM-PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 338 -----i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
...+.+.|++++|...|+++ ...|+ ...|..+..++...|++++|+..+++++++.|+++.++..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 78999999999999999988 34454 45788889999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 047067 407 YASAGRLNDAARARKMMKES 426 (566)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~ 426 (566)
|...|++++|...++++.+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=7.3e-21 Score=199.09 Aligned_cols=410 Identities=11% Similarity=0.001 Sum_probs=270.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILF 81 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 81 (566)
.|++++|...+..+++.. +.++.++..+...|.+.|++++|.+.|+++. +.+...|..+...|.+.|++++|+..|
T Consensus 38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555555555543 3345555555555555666666665555543 234445555555555556666665555
Q ss_pred HHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047067 82 SQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYG--YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN 159 (566)
Q Consensus 82 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 159 (566)
+.+.. .|+.... .+..+...+... .+...+..+.+.. ..+........+..|....+.+.+...+......+
T Consensus 117 ~~~~~---~~~~~~~--~~~~~~~~~~~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 117 SVLSL---NGDFDGA--SIEPMLERNLNK-QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHC----------------CHHHHHHHH-HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHhc---CCCCChH--HHHHHHHHHHHH-HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 42211 1221110 000111111111 2333333322210 00011111233334445555555555555544433
Q ss_pred hH---HHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhccCChHHHHHHHHH
Q 047067 160 EV---SWNALIAGHARK--------SEGEKALRTFSEMLREGFEPT--------HFSYSSVFTALASTGSLEQGKWVHAH 220 (566)
Q Consensus 160 ~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd--------~~t~~~ll~~~~~~~~~~~a~~~~~~ 220 (566)
.. .+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+...|++++|...+..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 22 333333333222 4788999999998874 344 23466667788889999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 047067 221 VIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV 297 (566)
Q Consensus 221 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 297 (566)
+++.. |+...+..+...|...|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.+.. +.+..
T Consensus 269 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 345 (537)
T 3fp2_A 269 SINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY 345 (537)
T ss_dssp HHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH
T ss_pred HHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 99875 347788889999999999999999999874 4467889999999999999999999999998853 22467
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCC----CHHHHHHH
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEP----TAAVWGAL 369 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l 369 (566)
.+..+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.++++ +..+ ....+..+
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 88889999999999999999997666654 445678888999999999999999999886 1111 22334455
Q ss_pred HHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 370 LGACRMH----------KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 370 l~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
...+... |++++|...++++++.+|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5667777 999999999999999999999999999999999999999999999998743
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.7e-18 Score=170.76 Aligned_cols=295 Identities=13% Similarity=0.050 Sum_probs=221.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067 129 VYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205 (566)
Q Consensus 129 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 205 (566)
+..+..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.... +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 44566667777777777777777776543 356677777777777777777777777776642 22456677777777
Q ss_pred hccCChHHHHHHHHHHHHhCCC--CcHhHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 047067 206 ASTGSLEQGKWVHAHVIKSGGQ--LVAFVGNTL------------VDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSML 268 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 268 (566)
...|++++|...+..+.+.... .+...+..+ ...+...|++++|.+.|+++. ..+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 7777777777777777765420 233444333 577888899999998888873 34677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHH------------H
Q 047067 269 TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV------------T 336 (566)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~------------~ 336 (566)
..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...+....+... .+...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHH
Confidence 88889999999999999888753 33577888888888888999999998866655432 2222222 3
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067 337 FVDLLGRAGLLDRALKFIREM-PIEPT-A----AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA 410 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 410 (566)
+...+.+.|++++|...++++ ...|+ . ..+..+..++...|++++|...++++++.+|+++.++..++.+|...
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 366788999999999999887 33343 2 23555778899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 047067 411 GRLNDAARARKMMKES 426 (566)
Q Consensus 411 g~~~~a~~~~~~m~~~ 426 (566)
|++++|...++++.+.
T Consensus 320 g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999874
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.2e-17 Score=164.50 Aligned_cols=311 Identities=11% Similarity=0.035 Sum_probs=225.6
Q ss_pred CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047067 57 DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLL 136 (566)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li 136 (566)
|+..|..+...+.+.|++++|+..|+++.+. .|+ +..++..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~-----------------------------------~~~~~~~~a 44 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD-----------------------------------NYIAYYRRA 44 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc-----------------------------------cHHHHHHHH
Confidence 3456777888888888998998888888764 222 223344445
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----CHHHHHHH--------
Q 047067 137 DMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP----THFSYSSV-------- 201 (566)
Q Consensus 137 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~l-------- 201 (566)
..|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++... .| +...+..+
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHH
Confidence 555555666666666655432 24455666666666666666666666666553 23 22222222
Q ss_pred ----HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHc
Q 047067 202 ----FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQH 274 (566)
Q Consensus 202 ----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 274 (566)
...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+..+|..+...|...
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 466778888888888888888775 4567778888888999999999999888874 34677888889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHccCCHHHHHHHHHhHHhhCCCccH----HHHHHH
Q 047067 275 GLGKATVRWFEKMLRNGIAPN-QVTFL------------CVLTACSHAGLLDEGQGYFALMKKHGVEPEE----AHYVTF 337 (566)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l 337 (566)
|++++|+..|++..+. .|+ ...+. .+...+...|++++|...+....+.... +. ..+..+
T Consensus 202 ~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l 278 (359)
T 3ieg_A 202 GDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI 278 (359)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 9999999999998874 333 23222 2356688899999999999666654422 22 335567
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067 338 VDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA 410 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 410 (566)
...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88999999999999999988 3345 6789999999999999999999999999999999988888777766543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.1e-18 Score=165.38 Aligned_cols=285 Identities=12% Similarity=0.025 Sum_probs=220.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047067 126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVF 202 (566)
Q Consensus 126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 202 (566)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45666777788888888888888888888654 245566777788888888888888888887753 33566777778
Q ss_pred HHHhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHH
Q 047067 203 TALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGK 278 (566)
Q Consensus 203 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 278 (566)
..+...| ++++|...+..+++.. +.+...+..+..+|...|++++|...|+++. ..+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8888888888887765 4456677888888888888888888888773 335677777888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC--------CCccHHHHHHHHHHhhhcCCHHHH
Q 047067 279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHG--------VEPEEAHYVTFVDLLGRAGLLDRA 350 (566)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A 350 (566)
+|+..|++..+.. +.+...+..+...+...|++++|...+....+.. .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999998888753 3356778888888888899999988885554431 133456788888889999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCh
Q 047067 351 LKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY-ASAGRL 413 (566)
Q Consensus 351 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 413 (566)
...+++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9988877 3234 5678888888899999999999999999999999888888888888 444543
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=3.6e-18 Score=178.63 Aligned_cols=390 Identities=11% Similarity=0.032 Sum_probs=260.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS 103 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 103 (566)
...+..+...|.+.|++++|.+.|+++. +.++..|..+...|.+.|++++|++.|++..+.. +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3455666667777777777777777654 3456667777777777777777777777776642 22344555555666
Q ss_pred ccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC------hHHHHHHHHHHHhCCChh
Q 047067 104 GAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN------EVSWNALIAGHARKSEGE 177 (566)
Q Consensus 104 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~ 177 (566)
...|+.+ .+...+. .... .|+ ..+..+..+...+....|...++.+...+ .......+..+....+.+
T Consensus 104 ~~~g~~~-~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLGNFT-DAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHTCHH-HHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcCCHH-HHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 6666666 5555553 2211 121 11222334444444556666666554321 111223334444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc--------cCChHHHHHHHHHHHHhCCCCc------HhHHHHHHHHHHh
Q 047067 178 KALRTFSEMLREGFEPTHFSYSSVF-TALAS--------TGSLEQGKWVHAHVIKSGGQLV------AFVGNTLVDMYAK 242 (566)
Q Consensus 178 ~A~~~~~~m~~~g~~pd~~t~~~ll-~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~ 242 (566)
.++..+..... ..+....+...+ ..+.. .+++++|..+++.+++...... ..++..+...+..
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 54444333221 122222222222 22222 2478889999998887653221 2356677788999
Q ss_pred cCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 243 SGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
.|++++|...|+++. .|+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+.
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999883 4557889999999999999999999999999863 3357889999999999999999999997
Q ss_pred hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
...+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++++..|++..
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 766654 334678888999999999999999999988 3334 5678899999999999999999999999998876654
Q ss_pred h------HHHHHHHHHhc----------CChhHHHHHHHHHHhCC
Q 047067 399 P------HILLANIYASA----------GRLNDAARARKMMKESG 427 (566)
Q Consensus 399 ~------~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g 427 (566)
. +..++.+|... |++++|...++++.+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 4 44556888888 99999999999998753
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.2e-18 Score=170.42 Aligned_cols=293 Identities=11% Similarity=0.079 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCC
Q 047067 29 MQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGAT 108 (566)
Q Consensus 29 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 108 (566)
..+.|+. +.|++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCC
Confidence 3444443 7889999999999996664 999999999999999999999965 3688899999999999999
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067 109 DDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 109 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 188 (566)
++ .+...+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 77 ~E-eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 77 WE-ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -----------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--
T ss_pred HH-HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99 888888888874 45688899999999999999999988864 67789999999999999999999999977
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 047067 189 EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSML 268 (566)
Q Consensus 189 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 268 (566)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv 214 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELI 214 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHH
Confidence 36899999999999999999999987 378999999999999999999988877755 4555556789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHhHHhhCCCc------cHHHHHHHHHH
Q 047067 269 TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH--AGLLDEGQGYFALMKKHGVEP------EEAHYVTFVDL 340 (566)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~p------~~~~~~~li~~ 340 (566)
..|.+.|++++|+.+++..+... +-....|+-+.-++++ .+++.+..+.|. .+.+++| +...|..++-.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988643 3345566666656654 556667777662 1223444 35678999999
Q ss_pred hhhcCCHHHHHHHHHhC
Q 047067 341 LGRAGLLDRALKFIREM 357 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~ 357 (566)
|...++++.|...+-+-
T Consensus 292 y~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 292 YDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHhhchHHHHHHHHHhC
Confidence 99999999998876554
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.7e-16 Score=164.13 Aligned_cols=403 Identities=11% Similarity=0.067 Sum_probs=294.7
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 047067 15 HAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKP 91 (566)
Q Consensus 15 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 91 (566)
++..++.. +.|..+|..++. +.+.|++++|+.+|+++. +.+...|...+..+.+.|++++|..+|++.+.. .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 45555554 557889999998 478999999999999875 335668999999999999999999999999875 47
Q ss_pred ChhHHHHHHHHH-ccCCCchHHHH----HHHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHhC
Q 047067 92 NQFTLSSVLKAS-GAGATDDKFGR----QVHAFCLKY-GYDW-NVYVGSSLLDMYAR---------FDQMDDAWFLFTAL 155 (566)
Q Consensus 92 ~~~t~~~ll~a~-~~~~~~~~~~~----~i~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~~ 155 (566)
+...|...+... ...++.+ .++ .+++..++. |..| +..+|...+....+ .|+++.|+++|++.
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~-~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLP-SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTST-THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHccchh-hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 877776666432 2345555 444 467766654 5544 56788888887765 78999999999986
Q ss_pred CC-CC---hHHHHHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCH--------HHHHHH
Q 047067 156 ES-KN---EVSWNALIAGH-------------ARKSEGEKALRTFSEML------REG---FEPTH--------FSYSSV 201 (566)
Q Consensus 156 ~~-~~---~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~pd~--------~t~~~l 201 (566)
.+ |+ ...|....... .+.+++..|..++.++. +.. ++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 64 22 23444332211 12456677777776632 211 34441 344444
Q ss_pred HHHHhc----cCCh----HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC-
Q 047067 202 FTALAS----TGSL----EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK-------SGSIE-------DAEKVFNRLLK- 258 (566)
Q Consensus 202 l~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~- 258 (566)
+..... .++. +.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++...
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 433222 1232 36777899888874 5677888888888876 69987 89999998763
Q ss_pred --C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHH
Q 047067 259 --R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ--VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAH 333 (566)
Q Consensus 259 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 333 (566)
| +...|..++..+.+.|++++|..+|+++++ ..|+. ..|..++..+.+.|++++|..+|....+.. +.+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence 3 578899999999999999999999999998 45653 478888888889999999999997666532 222333
Q ss_pred HHHHHHH-hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHH
Q 047067 334 YVTFVDL-LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG----PHILLANI 406 (566)
Q Consensus 334 ~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~ 406 (566)
|.....+ +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++. .+...+..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3333222 34689999999999987 3345 5789999999999999999999999999998877665 67777888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 047067 407 YASAGRLNDAARARKMMKES 426 (566)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~ 426 (566)
....|+.+.+..+.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999998763
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.1e-17 Score=159.77 Aligned_cols=265 Identities=9% Similarity=0.005 Sum_probs=229.0
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067 158 KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237 (566)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 237 (566)
.+...+..+...+...|++++|+++|+++.... +.+...+..++..+...|++++|..++.++++.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356677888889999999999999999998764 3345566677888899999999999999999876 55677888999
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 238 DMYAKSG-SIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 238 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
..|...| ++++|.+.|++... .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998743 367889999999999999999999999999863 224567777999999999999
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHHH
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI----------EPTAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~a 382 (566)
+|...++...+.. +.+...+..+...|.+.|++++|...++++ .. ..+..+|..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999997766543 445788899999999999999999999877 11 23457899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 383 AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
...++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999987653
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=7.9e-16 Score=158.97 Aligned_cols=366 Identities=11% Similarity=0.026 Sum_probs=283.1
Q ss_pred CChhHHHHHHHHHHh----cCChhHHHHHHccCC-CCCcchHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCChhH
Q 047067 25 NDIAMQNTILNAYAK----CGCLDEARKLFDEMP-VKDMVTWTALISGYSQ----NDQPENAIILFSQMLRLGLKPNQFT 95 (566)
Q Consensus 25 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 95 (566)
.++.....|...|.. .+++++|...|++.. ..++..+..|...|.. .+++++|++.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 367778888888887 789999999998764 3467788888888888 889999999999988765 4455
Q ss_pred HHHHHHHHcc----CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCC-CChHHHHHH
Q 047067 96 LSSVLKASGA----GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR----FDQMDDAWFLFTALES-KNEVSWNAL 166 (566)
Q Consensus 96 ~~~ll~a~~~----~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~l 166 (566)
+..+-..+.. .++.+ .+...+....+.| ++..+..|..+|.. .++.++|.+.|++..+ .+..++..+
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKA-ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5556556655 66777 8888888888875 56677788888887 7889999999987654 477788888
Q ss_pred HHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067 167 IAGHAR----KSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238 (566)
Q Consensus 167 i~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 238 (566)
...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..|..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888888 889999999999888765 55666677777764 788999999998888765 4456667777
Q ss_pred HHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067 239 MYAK----SGSIEDAEKVFNRLLK-RDVVSWNSMLTGCAQH-----GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308 (566)
Q Consensus 239 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 308 (566)
+|.. .++.++|...|++..+ .+..++..+...|... +++++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8877 8899999999988754 4677788888888887 89999999999988865 45566677777766
Q ss_pred cC---CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 047067 309 AG---LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREMPIEPTAAVWGALLGACRM----HK 377 (566)
Q Consensus 309 ~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 377 (566)
.| ++++|...|+...+.+ +...+..|..+|.. .+++++|.+.|++.--..+...+..|...|.. .+
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 56 7888999887666653 56677778888887 78999999999887212367778888888877 78
Q ss_pred CHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 047067 378 NVELGAYAAERIFELDPH---DSGPHILLANIYAS 409 (566)
Q Consensus 378 ~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 409 (566)
+.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999988844 66566666655543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.3e-17 Score=165.29 Aligned_cols=282 Identities=9% Similarity=-0.034 Sum_probs=223.7
Q ss_pred HHhcCCHHHHHH-HHHhCCC---C----ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067 139 YARFDQMDDAWF-LFTALES---K----NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS 210 (566)
Q Consensus 139 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 210 (566)
|...|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8876543 1 34568888999999999999999999998864 4467788888899999999
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHH---------------HHHHHH
Q 047067 211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNS---------------MLTGCA 272 (566)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 272 (566)
+++|...+..+++.. +.+..++..+...|...|++++|.+.|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998886 55778888999999999999999999998742 2 2222221 233344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067 273 QHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (566)
..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+.... +.+...+..+...|.+.|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999999853221 47889999999999999999999997766653 345778999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCChhHHHH
Q 047067 352 KFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD-----------SGPHILLANIYASAGRLNDAAR 418 (566)
Q Consensus 352 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 418 (566)
..++++ ...| +..+|..+..++...|++++|...+++++++.|++ ..++..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 3344 57899999999999999999999999999998877 7889999999999999999998
Q ss_pred HHHHH
Q 047067 419 ARKMM 423 (566)
Q Consensus 419 ~~~~m 423 (566)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-16 Score=164.60 Aligned_cols=370 Identities=13% Similarity=0.058 Sum_probs=217.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCC------------CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMP------------VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQF 94 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 94 (566)
...||.|...|...|++++|++.|++.. ....++|+.+...|...|++++|...|++..+..-
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~----- 125 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE----- 125 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH-----
Confidence 3456666666666666666666655421 12334566666666666666666666655433100
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhCCC--C-ChHHHHHHHHH
Q 047067 95 TLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARF--DQMDDAWFLFTALES--K-NEVSWNALIAG 169 (566)
Q Consensus 95 t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~~--~-~~~~~~~li~~ 169 (566)
..... .-.....+++.+..++.+. +++++|...|++..+ | ++..+..+...
T Consensus 126 -------~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 126 -------KFSSP-----------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp -------HSCCS-----------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred -------hcccc-----------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 00000 0011223344444444443 457788888877543 2 45555555444
Q ss_pred ---HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067 170 ---HARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK 242 (566)
Q Consensus 170 ---~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (566)
+...++.++|++.|++..+.. +.+..++..+...+.. .++.++|.+.+++..+.. +.+..++..+...|.+
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 345677788888888777643 2344455554444433 456778888888887765 5566677788888888
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047067 243 SGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQ-------------------HGLGKATVRWFEKMLRNGIAPNQVTFL 300 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (566)
.|++++|...|++.. ..+..+|..+...|.. .+..++|+..|++..+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 888888888888763 3355666666655533 234667888888887743 22456778
Q ss_pred HHHHHHHccCCHHHHHHHHHhHHhhCCCccHH--HHHHHHH-HhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 047067 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEA--HYVTFVD-LLGRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMH 376 (566)
Q Consensus 301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~ 376 (566)
.+...+...|++++|...|+........|... .+..+.. .+...|+.++|...|++. .+.|+...+...
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-------
Confidence 88899999999999999997776655443322 2333333 345789999999999887 666765444332
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 047067 377 KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWV 437 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 437 (566)
...+.+++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus 412 --~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 --KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456778888999999999999999999999999999999999998765444445553
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=7.2e-15 Score=151.76 Aligned_cols=353 Identities=12% Similarity=0.030 Sum_probs=296.7
Q ss_pred CCCcchHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc----CCCchHHHHHHHHHHHHhCCC
Q 047067 55 VKDMVTWTALISGYSQ----NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA----GATDDKFGRQVHAFCLKYGYD 126 (566)
Q Consensus 55 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~~~~~i~~~~~~~g~~ 126 (566)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+ .+...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA-QAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC--
Confidence 4577888888888888 899999999999998865 45566666666666 78888 8999999998876
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCC-ChHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHH
Q 047067 127 WNVYVGSSLLDMYAR----FDQMDDAWFLFTALESK-NEVSWNALIAGHAR----KSEGEKALRTFSEMLREGFEPTHFS 197 (566)
Q Consensus 127 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t 197 (566)
++..+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 56777889999998 89999999999987654 67788889999988 889999999999998875 6777
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 047067 198 YSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK----SGSIEDAEKVFNRLLK-RDVVSWNSML 268 (566)
Q Consensus 198 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 268 (566)
+..+...+.. .++.++|...+.+..+.+ +...+..|..+|.. .+++++|...|++..+ .+..++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877 899999999999999876 45677788888887 8999999999998754 4677888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 269 TGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA-----GLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 269 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
..|.. .++.++|+.+|++..+.| +...+..+...+... +++++|...+....+.+ +...+..|..
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 336 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGA 336 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 88888 899999999999998865 556777777778776 89999999997777755 3456777888
Q ss_pred HhhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047067 340 LLGRAG---LLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYAS--- 409 (566)
Q Consensus 340 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 409 (566)
+|.+.| ++++|.++|++.--..+...+..|...|.. .++.++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 887766 889999999988223578889999999988 899999999999999865 46789999999998
Q ss_pred -cCChhHHHHHHHHHHhCCC
Q 047067 410 -AGRLNDAARARKMMKESGV 428 (566)
Q Consensus 410 -~g~~~~a~~~~~~m~~~g~ 428 (566)
.+++++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998764
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=4.9e-16 Score=148.46 Aligned_cols=269 Identities=7% Similarity=-0.080 Sum_probs=216.3
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCh----HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067 138 MYARFDQMDDAWFLFTALESKNE----VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ 213 (566)
Q Consensus 138 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 213 (566)
-....|++..|+..++.....++ .....+..+|...|++++|+..++.. -+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34567999999999988766542 34566788999999999999877542 35677888888999999999999
Q ss_pred HHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047067 214 GKWVHAHVIKSGG-QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI 292 (566)
Q Consensus 214 a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (566)
|.+.++.++..+. +.+...+..+..+|...|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 9999999998774 44667777888999999999999999999 568889999999999999999999999999985
Q ss_pred CCCHHHH---HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047067 293 APNQVTF---LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWG 367 (566)
Q Consensus 293 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 367 (566)
.|+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+...+.+.|++++|...+++. ...| +..+|.
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4664321 12334444568999999999777765 3567888999999999999999999999987 4455 667899
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067 368 ALLGACRMHKNVEL-GAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419 (566)
Q Consensus 368 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 419 (566)
.++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 99999999999875 6789999999999987543 445556666655443
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=7.4e-19 Score=171.92 Aligned_cols=252 Identities=13% Similarity=0.108 Sum_probs=120.2
Q ss_pred HhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047067 140 ARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHA 219 (566)
Q Consensus 140 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 219 (566)
-+.|++++|.++++++..+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4678899999999999665 49999999999999999999999653 678899999999999999999999888
Q ss_pred HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047067 220 HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299 (566)
Q Consensus 220 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 299 (566)
..++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 4557888999999999999999998886 477789999999999999999999999977 378
Q ss_pred HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047067 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNV 379 (566)
Q Consensus 300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 379 (566)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence 99999999999999999999765 26889999999999999999998777766545544 44688999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CChhHHHHHHH
Q 047067 380 ELGAYAAERIFELDPHDSGPHILLANIYASA--GRLNDAARARK 421 (566)
Q Consensus 380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 421 (566)
++|..+++..+.++|...+.|+.|+.+|++- ++..+..+.|.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999865 45555555554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.7e-17 Score=162.03 Aligned_cols=260 Identities=7% Similarity=-0.077 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 239 (566)
...|..+...+.+.|++++|++.|+++.... +.+..++..+...+...|++++|...++++++.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345555566666666666666666665542 2345555566666666666666666666666554 3345566666666
Q ss_pred HHhcCCHHHHHHHHHhcCCC-------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLLKR-------------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PNQVTFLCVLTA 305 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a 305 (566)
|...|++++|...|+++.+. ....+..+...+...|++++|+..|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 66666666666666665321 1223445577888889999999999998885322 157788888899
Q ss_pred HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 047067 306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGA 383 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 383 (566)
+...|++++|...|+...+.. +.+...|..+...|.+.|++++|...|+++ ...| +..+|..+..++...|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999996666553 445778899999999999999999999887 4445 4788999999999999999999
Q ss_pred HHHHHHHhcCCC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 384 YAAERIFELDPH------------DSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 384 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
..+++++++.|+ +..++..++.++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998776 356788999999999999988877654
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=5.6e-15 Score=154.16 Aligned_cols=385 Identities=12% Similarity=0.074 Sum_probs=281.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHH-HHhCCCccHHHH--
Q 047067 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISG-YSQNDQPENAII-- 79 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~-~~~~g~~~~A~~-- 79 (566)
.|+++.|+.+++++++. ++.+...|..++..+.+.|++++|+.+|++.. .|++..|...+.. ....|+.++|.+
T Consensus 25 ~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp SSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 57899999999999986 36678899999999999999999999999875 4677778877753 345688887765
Q ss_pred --HHHHHHH-CCCCCC-hhHHHHHHHHHcc---------CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------
Q 047067 80 --LFSQMLR-LGLKPN-QFTLSSVLKASGA---------GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMY------- 139 (566)
Q Consensus 80 --l~~~m~~-~g~~p~-~~t~~~ll~a~~~---------~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y------- 139 (566)
+|++.+. .|..|+ ...|...+..... .++.+ .++.++..+++........+|.......
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT-AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH-HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH-HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhH
Confidence 7776654 365554 4456555554433 45666 8888888888732111123443332211
Q ss_pred ------HhcCCHHHHHHHHHh-------CC------CCC--------hHHHHHHHHHHHhC----CCh----hHHHHHHH
Q 047067 140 ------ARFDQMDDAWFLFTA-------LE------SKN--------EVSWNALIAGHARK----SEG----EKALRTFS 184 (566)
Q Consensus 140 ------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~ 184 (566)
.+.+++..|..++.. +. .|+ ...|...+.....+ ++. ++|+.+|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 134567777776664 11 111 35677766544332 232 37888999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067 185 EMLREGFEPTHFSYSSVFTALAS-------TGSLE-------QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE 250 (566)
Q Consensus 185 ~m~~~g~~pd~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 250 (566)
+..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+..++..++..+.+.|++++|.
T Consensus 263 ~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 988752 3456677777777664 78987 89999999987334567889999999999999999999
Q ss_pred HHHHhcC--CC-Ch-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHccCCHHHHHHHHHhHHh
Q 047067 251 KVFNRLL--KR-DV-VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTA-CSHAGLLDEGQGYFALMKK 324 (566)
Q Consensus 251 ~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~ 324 (566)
.+|+++. .| +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...... +...|++++|..+|+...+
T Consensus 342 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 342 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9999874 33 33 58999999999999999999999999885 333 3333332222 3358999999999966555
Q ss_pred hCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 325 HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 325 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 420 ~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 420 KY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 43 345788999999999999999999999987 33443 458999999999999999999999999998885
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3e-16 Score=152.56 Aligned_cols=257 Identities=9% Similarity=-0.073 Sum_probs=172.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067 163 WNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK 242 (566)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (566)
|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++++.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 1233344444444444444555544444444443 2334444455555555
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067 243 SGSIEDAEKVFNRLLK---RDVVSWNSM--------------LT-GCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (566)
.|++++|.+.|+++.. .+...+..+ .. .+...|++++|+..++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555554421 112222222 22 3667788899999999988753 336778888888
Q ss_pred HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067 305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 382 (566)
.+...|++++|...+....+.. +.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 8999999999999996666553 345678888999999999999999999887 3344 578899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 383 AYAAERIFELDPH------------DSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 383 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
...++++++..|. ++.++..++.+|...|++++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998 6788999999999999999999988754
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=3e-16 Score=155.47 Aligned_cols=238 Identities=13% Similarity=0.008 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047067 129 VYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF-SYSSVFTA 204 (566)
Q Consensus 129 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~ 204 (566)
..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.. .+..+...
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 175 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 34455556666666777777666665432 356667777777777777777777777776643 2221 11100000
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC---ChhHHHHHHHHHHHcCCHHH
Q 047067 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KR---DVVSWNSMLTGCAQHGLGKA 279 (566)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~ 279 (566)
.. . ..+ ...+..+...+ ..|++++|...|+++. .| +..+|..+...|...|++++
T Consensus 176 -------~~-------~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 176 -------AG-------G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp -----------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred -------hh-------h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 00 0 000 00001112222 4555555555555542 11 34455555555555566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 047067 280 TVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P 358 (566)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 358 (566)
|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++ .
T Consensus 236 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 236 AVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666665555531 1234555555555666666666666664444332 223455555666666666666666666554 1
Q ss_pred CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067 359 IEP------------TAAVWGALLGACRMHKNVELGAYAAERIF 390 (566)
Q Consensus 359 ~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 390 (566)
+.| ...+|..+..++...|+.++|..++++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 111 14566667777777777777666665544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.3e-15 Score=145.61 Aligned_cols=247 Identities=10% Similarity=0.026 Sum_probs=203.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 047067 167 IAGHARKSEGEKALRTFSEMLREGFEPTH--FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG 244 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 244 (566)
|.-....|++..|+..++.... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999887644 34543 3556678899999999999876544 24667788889999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 245 SIEDAEKVFNRLL----KR-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 245 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999873 23 567788888999999999999999998 457788999999999999999999999
Q ss_pred HhHHhhCCCccHH---HHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067 320 ALMKKHGVEPEEA---HYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDP 394 (566)
Q Consensus 320 ~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 394 (566)
+.+.+.. |+.. ....++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+..++++++++|
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7777664 4432 1233445566679999999999998 2234778999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhH-HHHHHHHHHhCC
Q 047067 395 HDSGPHILLANIYASAGRLND-AARARKMMKESG 427 (566)
Q Consensus 395 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g 427 (566)
+++.++..++.++...|++++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999986 578999888643
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=6.1e-16 Score=153.26 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=194.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 047067 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTG 270 (566)
Q Consensus 194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 270 (566)
+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|+..|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34558888899999999999999999999986 5678899999999999999999999999874 3468899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC-ccHHHHHHHH
Q 047067 271 CAQHGLGKATVRWFEKMLRNGIAPNQ-----------VTFLCVLTACSHAGLLDEGQGYFALMKKHGVE-PEEAHYVTFV 338 (566)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li 338 (566)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++.+.+.... ++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 3332 23344577889999999999999766665422 2678899999
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA 416 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 416 (566)
..|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3344 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 047067 417 ARARKMMKES 426 (566)
Q Consensus 417 ~~~~~~m~~~ 426 (566)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=174.29 Aligned_cols=165 Identities=11% Similarity=0.050 Sum_probs=131.5
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 047067 225 GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL-------LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV 297 (566)
Q Consensus 225 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 297 (566)
.......+||+||++|+++|++++|.++|++| ..||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 34555678999999999999999999999776 36899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCC-HHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC------HHHHHHHH
Q 047067 298 TFLCVLTACSHAGL-LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPT------AAVWGALL 370 (566)
Q Consensus 298 t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~ll 370 (566)
||++||.++++.|+ .++|.++|+.|.+.|+.||..+|++++....+.+-++...++...+ .|+ ..+...|.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHHH
Confidence 99999999999997 5789999999999999999999999998877765555554443333 222 23334455
Q ss_pred HHHHhcC---------CHHHHHHHHHHHHh
Q 047067 371 GACRMHK---------NVELGAYAAERIFE 391 (566)
Q Consensus 371 ~~~~~~g---------~~~~a~~~~~~~~~ 391 (566)
+.|...+ ..++-...+++-+.
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 5566554 23555566665553
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.4e-13 Score=149.72 Aligned_cols=313 Identities=12% Similarity=0.068 Sum_probs=219.0
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 047067 64 LISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD 143 (566)
Q Consensus 64 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 143 (566)
+...+...|.+++|..+|++.. -.....+.++. ..++++ .|.++...+ .++.+|..+..++.+.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nld-rAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLD-RAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHH-HHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 3445566677777777777642 11111222322 334444 444444432 34677888888888888
Q ss_pred CHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067 144 QMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK 223 (566)
Q Consensus 144 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 223 (566)
++++|.+.|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 888888888664 567777888888888888888888887766543 33333334777788887777533332 2
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067 224 SGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL 303 (566)
Q Consensus 224 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (566)
.++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+.
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 344555666888888888888888888875 47888888888888888888888876 2567888888
Q ss_pred HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCH
Q 047067 304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH--KNV 379 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~ 379 (566)
.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.. +++| ....|.-|...+++. ++.
T Consensus 1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence 888888888888776532 3345666778899999999999999999776 5555 335676666666554 466
Q ss_pred HHHHHHHHHHHhcCC-----CCCchHHHHHHHHHhcCChhHHHH
Q 047067 380 ELGAYAAERIFELDP-----HDSGPHILLANIYASAGRLNDAAR 418 (566)
Q Consensus 380 ~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 418 (566)
.++.+.|..-..+.| .+...|.-+...|.+.|+|+.|..
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 677777777666655 566778889999999999998884
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.4e-15 Score=147.85 Aligned_cols=262 Identities=8% Similarity=-0.007 Sum_probs=192.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067 129 VYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205 (566)
Q Consensus 129 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 205 (566)
...+..+...+.+.|++++|..+|+++.+ .+..+|..+...+...|++++|.+.|+++.... +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456667777778888888888877643 356677777788888888888888888877653 33566777777778
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcHhHHHHH--------------HH-HHHhcCCHHHHHHHHHhcC---CCChhHHHHH
Q 047067 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL--------------VD-MYAKSGSIEDAEKVFNRLL---KRDVVSWNSM 267 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 267 (566)
...|++++|...+..+.+... .+...+..+ .. .+...|++++|.+.|+++. ..+..+|..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 888888888888888777642 222222222 22 3677788888888888763 3467788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCH
Q 047067 268 LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL 347 (566)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 347 (566)
...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+...|.+.|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 888999999999999999888753 2356788888888888999999999986666543 34567788888899999999
Q ss_pred HHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067 348 DRALKFIREM-PIEPT-------------AAVWGALLGACRMHKNVELGAYAAERIFELDP 394 (566)
Q Consensus 348 ~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 394 (566)
++|.+.++++ ...|+ ..+|..+..++...|+.++|..++++.++..|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999988877 22333 56888888999999999999988887765433
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.9e-13 Score=148.74 Aligned_cols=344 Identities=12% Similarity=0.069 Sum_probs=242.5
Q ss_pred HHHHHHHHhcCChhHHHHHHccCC-CC-----CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067 31 NTILNAYAKCGCLDEARKLFDEMP-VK-----DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG 104 (566)
Q Consensus 31 ~~li~~~~~~g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 104 (566)
...+..|...|.+.+|.++++++. .+ +...-|.|+.+..+. +..+..+...+.... + ..-+-..|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 444555666666666666666554 11 223344455555444 334444444433311 1 222344455
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHH
Q 047067 105 AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFS 184 (566)
Q Consensus 105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 184 (566)
..+..+ +|..+++... ......+.+ +-..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.
T Consensus 1061 ~lglyE-EAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1061 SNELFE-EAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred hCCCHH-HHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 566666 6666666531 111111222 226667777777777653 46788899999999999999999986
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 047067 185 EMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSW 264 (566)
Q Consensus 185 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 264 (566)
+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++..... ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 53 467788889999999999999999998887765 34444456888999999888644443 45566778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc
Q 047067 265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA 344 (566)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 344 (566)
..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 88888899999999999999884 47888999999999999999998664 3557888888888889
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CChhHHHHHHH
Q 047067 345 GLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA--GRLNDAARARK 421 (566)
Q Consensus 345 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 421 (566)
|++..|......+ .-++..+..++..|...|.+++|+.+++..++++|.....|.-|+.+|++. ++..++.++|.
T Consensus 1264 ~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999998887654 345556678899999999999999999999999999999998888888865 45556666555
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=171.70 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=125.7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH
Q 047067 125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALE-------SKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS 197 (566)
Q Consensus 125 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 197 (566)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHH
Q 047067 198 YSSVFTALASTGSL-EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGC 271 (566)
Q Consensus 198 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 271 (566)
|+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 789999999999999999999999998887766555555554444211 123334455556
Q ss_pred HHcC
Q 047067 272 AQHG 275 (566)
Q Consensus 272 ~~~g 275 (566)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.1e-14 Score=134.23 Aligned_cols=225 Identities=12% Similarity=0.011 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 240 (566)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345555555555555555555555555543 444444444444444444444444444443321000
Q ss_pred HhcCCHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067 241 AKSGSIEDAEKVFNRLLKRD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 316 (566)
.++ ..+|..+...|...|++++|+..|++..+. .|+.. .+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHH
Confidence 011 456677777777888888888888887773 45532 345567788888
Q ss_pred HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067 317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDP 394 (566)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 394 (566)
..+....... +.+...+..+...+...|++++|...++++ ...| +..+|..+...+...|++++|...++++++..|
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 8886655432 334567778888888999999999998887 3334 577888999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 395 HDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 395 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+++.++..++.+|...|++++|...+++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988763
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.2e-14 Score=134.02 Aligned_cols=234 Identities=13% Similarity=0.033 Sum_probs=150.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHHHH
Q 047067 128 NVYVGSSLLDMYARFDQMDDAWFLFTALES--KNEVSWNALIAGHARKSEGEKALRTFSEMLREG--FEPT----HFSYS 199 (566)
Q Consensus 128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd----~~t~~ 199 (566)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..... ..|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356788899999999999999999987543 678899999999999999999999999987742 1122 45666
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 047067 200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKA 279 (566)
Q Consensus 200 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (566)
.+...+...|++++|...+..+.+.. |+ ...+.+.|++++|...++.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~----------------------- 131 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAE----------------------- 131 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHH-----------------------
Confidence 77777777777777777777777654 22 12344445555555555544
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 047067 280 TVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM- 357 (566)
Q Consensus 280 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 357 (566)
... .| +...+..+...+...|++++|...++...... +.+...+..+...|.+.|++++|...+++.
T Consensus 132 --------~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 132 --------AYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp --------HHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------HHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 432 11 22334444444444455555554443333322 223445555566666666666666666555
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHH
Q 047067 358 PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELD------PHDSGPHILLA 404 (566)
Q Consensus 358 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 404 (566)
...| +...|..+..++...|++++|...+++++++. |.+...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 2233 45667777777777788888888888877776 66555444443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=3.1e-14 Score=129.77 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=151.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 047067 227 QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCV 302 (566)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 302 (566)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777788888888999999998888743 36678888888999999999999999998885 34 46678888
Q ss_pred HHHHHcc-----------CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 047067 303 LTACSHA-----------GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALL 370 (566)
Q Consensus 303 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 370 (566)
..++... |++++|...++...+.. +.+...+..+..+|...|++++|...|++. .+..+...|..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 8888888 99999999997766654 335678888999999999999999999987 2226788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
.++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++.-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887653
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=5.9e-14 Score=132.63 Aligned_cols=241 Identities=10% Similarity=-0.049 Sum_probs=183.5
Q ss_pred hCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 047067 172 RKSEGEKALRTFSEMLREGFE---PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED 248 (566)
Q Consensus 172 ~~g~~~~A~~~~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 248 (566)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...+.++++.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 356778888888888765311 134567777777888888888888888888775 4467778888888999999999
Q ss_pred HHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhh
Q 047067 249 AEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH 325 (566)
Q Consensus 249 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 325 (566)
|.+.|+++. ..+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999888874 346788999999999999999999999999884 566555555556667789999999999555544
Q ss_pred CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
. +++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++...
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 3 3344444 3777788888899999999877 33332 4788889999999999999999999999999987644
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 047067 400 HILLANIYASAGRLNDAARAR 420 (566)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~ 420 (566)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788889999887765
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=5.2e-13 Score=136.97 Aligned_cols=368 Identities=12% Similarity=-0.016 Sum_probs=213.8
Q ss_pred CCCCcHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHhcCChhHHHHHHccCC-------C----CCcchHHHH
Q 047067 4 HLKKLKEARIVHAHILGS-----A---FKNDIAMQNTILNAYAKCGCLDEARKLFDEMP-------V----KDMVTWTAL 64 (566)
Q Consensus 4 ~~~~~~~a~~i~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~----~~~~~~~~l 64 (566)
..|+.++|.+.+...++. + -+....+|+.+..+|...|++++|...|++.. . ....+++.+
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 368899999999887653 1 12235678999999999999999998887642 1 123456665
Q ss_pred HHHHHh--CCCccHHHHHHHHHHHCCCCCChhH-HHHHHHH---HccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047067 65 ISGYSQ--NDQPENAIILFSQMLRLGLKPNQFT-LSSVLKA---SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDM 138 (566)
Q Consensus 65 i~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a---~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~ 138 (566)
..++.. .+++++|+..|++..+. .|+... +..+..+ +...++.+ .+...+..+++.. +.+..++..+...
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~-~al~~~~~al~l~-p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQ-NAIDPLRQAIRLN-PDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCC-CTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHH-HHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence 555554 45789999999998874 465443 3333222 33455555 5666666666654 3345555555554
Q ss_pred HHh----cCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 047067 139 YAR----FDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGS 210 (566)
Q Consensus 139 y~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~ 210 (566)
+.. .+++++|.+.|++... .+..+|..+...|...|++++|+..|++..+. .|+ ..++..+...+...+.
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 444 4567788888876543 46677888888888888888888888888774 343 4445544444422111
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067 211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKM 287 (566)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (566)
.. .... ...........+..+.|...|++.. ..+..+|..+...|...|++++|+..|++.
T Consensus 297 ~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 297 QV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 00 0000 0001111112234567777777653 446678899999999999999999999999
Q ss_pred HHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-C
Q 047067 288 LRNGIAPNQV--TFLCVLT-ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-T 362 (566)
Q Consensus 288 ~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 362 (566)
++....|... .+..+.. ...+.|+.++|+..|....+. .|+....... ...+.+++++. ...| +
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~ 429 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKNGAD 429 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHCC-C
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhCCCC
Confidence 8854333221 2223322 335689999999999666653 4443322222 22333444433 2234 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
..+|..+...+...|++++|++.++++++++|.+|.+...++
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 678999999999999999999999999999999887765544
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.2e-13 Score=130.42 Aligned_cols=242 Identities=11% Similarity=0.017 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 047067 131 VGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT--HFSYSSVFTAL 205 (566)
Q Consensus 131 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~ 205 (566)
........|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++....+..|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666666777777776666543 2344666666666677777777777666665321111 22355555666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 047067 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVR 282 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 282 (566)
...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554 23344555555566666666666666655532 233444444422222335555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC---HHHHHHHHHhC--
Q 047067 283 WFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL---LDRALKFIREM-- 357 (566)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-- 357 (566)
.|+++.+. .|+ +...+..+...+...|+ +++|...+++.
T Consensus 164 ~~~~a~~~--~p~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 164 SFVKVLEL--KPN----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHH--STT----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHh--Ccc----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 55555542 222 12333333344444443 33344433333
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067 358 --PIEPT------AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS 409 (566)
Q Consensus 358 --~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 409 (566)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 11122 24677788888899999999999999999999998776666555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=5.7e-13 Score=135.61 Aligned_cols=369 Identities=11% Similarity=0.005 Sum_probs=178.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCCCcchHHHHHHHHHhCC-----CccH
Q 047067 5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCL---DEARKLFDEMPVKDMVTWTALISGYSQND-----QPEN 76 (566)
Q Consensus 5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~ 76 (566)
.|++++|.+.+....+.| ++..+..|..+|...|+. ++|...|++....++..+..|...+...| ++++
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 355666666676666655 233344455555556666 66766666665555556666665444444 4556
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHccCCCch--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHHHHHH
Q 047067 77 AIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD--KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD----QMDDAWF 150 (566)
Q Consensus 77 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~ 150 (566)
|+..|++..+.|.. + .+..+-..+...+... ..+...+....+.| ++.....|..+|...+ ..+.+..
T Consensus 93 A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 93 AESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 66666666665422 2 2333333332222211 01222222222222 2233344444444444 2223333
Q ss_pred HHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067 151 LFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA 230 (566)
Q Consensus 151 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 230 (566)
++......++.++..|...|.+.|.. .+.++|...+....+.| +++.
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~--------------------------------~~~~~A~~~~~~aa~~g-~~~a 213 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQP--------------------------------EQQAELLKQMEAGVSRG-TVTA 213 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCH--------------------------------HHHHHHHHHHHHHHHTT-CSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCc--------------------------------ccHHHHHHHHHHHHHCC-CHHH
Confidence 33333333334444444444444400 04444555555554444 3333
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067 231 FVGNTLVDMYAKS----GSIEDAEKVFNRLLKRDVVSWNSMLTG-C--AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL 303 (566)
Q Consensus 231 ~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (566)
..+..|..+|... +++++|.+.|++....++..+..|... | ...+++++|+.+|++..+.| +...+..|.
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg 290 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG 290 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3334455555443 566667766666653355566666665 3 34677788888888777765 555566666
Q ss_pred HHHHccC-----CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047067 304 TACSHAG-----LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREMPIEPTAAVWGALLGACR 374 (566)
Q Consensus 304 ~a~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 374 (566)
..|. .| ++++|...|.... . -+...+..|..+|.. ..++++|..+|++.--.-+......|...|.
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS 365 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 6665 44 7888888885554 2 244555566666655 3478888888877621223344455555554
Q ss_pred h----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 047067 375 M----HKNVELGAYAAERIFELDPHDSGPHILLANIYA--SAGRLNDAARARKMMKE 425 (566)
Q Consensus 375 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 425 (566)
. ..+.++|...++++.+.++.. +...+..+.. ..++..+|.++.++-++
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2 457888888888888776543 3333333332 23455566666555443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.1e-12 Score=120.29 Aligned_cols=206 Identities=10% Similarity=0.013 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239 (566)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 239 (566)
...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+.++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4556666666777777777777776665532 2233444444444444444444444444444432
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGY 318 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 318 (566)
..+...|..+...|...|++++|++.|+++.+.+..| +...+..+...+...|++++|...
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233444444555555555555555555554422223 234444555555555555555555
Q ss_pred HHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 319 FALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
+....+.. +.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|+.++|.+.++++++..|++
T Consensus 164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 54433332 223455556666666666666666666665 2233 44566666666777777777777777777777766
Q ss_pred Cch
Q 047067 397 SGP 399 (566)
Q Consensus 397 ~~~ 399 (566)
+..
T Consensus 243 ~~~ 245 (252)
T 2ho1_A 243 LEY 245 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=6.9e-13 Score=131.04 Aligned_cols=247 Identities=12% Similarity=0.065 Sum_probs=193.6
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS-LEQGKWVHAHVIKSGGQLVAFVGNTLV 237 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 237 (566)
+...|+.+...+.+.|++++|++.|++..... +-+...|..+..++...|+ +++|...++++++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35578888888888999999999999888753 2345677778888888886 999999999988876 55677888888
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHH
Q 047067 238 DMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH-AGLLD 313 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 313 (566)
.+|.+.|++++|+..|+++. ..+..+|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 89999999999999998874 44778899999999999999999999999988532 257788888888888 56546
Q ss_pred HH-----HHHHHhHHhhCCCccHHHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------
Q 047067 314 EG-----QGYFALMKKHGVEPEEAHYVTFVDLLGRAG--LLDRALKFIREMPIEP-TAAVWGALLGACRMHK-------- 377 (566)
Q Consensus 314 ~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g-------- 377 (566)
+| ...+....... +-+...|..+..+|.+.| ++++|.+.++++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 66 46775555543 335668888888888888 6889998888875455 4567888888887763
Q ss_pred C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 047067 378 N-VELGAYAAERI-FELDPHDSGPHILLANIYAS 409 (566)
Q Consensus 378 ~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 409 (566)
+ .++|+.+++++ .+++|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999988888877766553
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=5.1e-12 Score=119.40 Aligned_cols=224 Identities=10% Similarity=-0.018 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGN 234 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (566)
+..++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555666666666666666666666552 233445555555555 556666666666555543 344445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067 235 TLVDMYAK----SGSIEDAEKVFNRLLK-RDVVSWNSMLTGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305 (566)
Q Consensus 235 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 305 (566)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555555 5555555555555422 244555555555555 566666666666655543 33444444444
Q ss_pred HHc----cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 047067 306 CSH----AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREM-PIEPTAAVWGALLGACRM- 375 (566)
Q Consensus 306 ~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~- 375 (566)
+.. .+++++|...|+...+.+ +...+..+..+|.. .+++++|.+.+++. ... +...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 444 555555555554443332 22334444444444 55555555555444 111 13344444444444
Q ss_pred ---cCCHHHHHHHHHHHHhcCCC
Q 047067 376 ---HKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 376 ---~g~~~~a~~~~~~~~~~~p~ 395 (566)
.++.++|...++++++++|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 45555555555555555443
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=4.5e-12 Score=119.77 Aligned_cols=224 Identities=9% Similarity=-0.036 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 047067 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK----SGSIEDAEKVFNRLLK-RDVVSWNSML 268 (566)
Q Consensus 194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 268 (566)
+..++..+...+...|++++|...+.+..+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5567778888899999999999999999983 355677889999999 9999999999998743 4788899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067 269 TGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH----AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL 340 (566)
Q Consensus 269 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 340 (566)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 99999 999999999999999875 77888889999998 999999999997777765 45667778888
Q ss_pred hhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047067 341 LGR----AGLLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYAS--- 409 (566)
Q Consensus 341 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 409 (566)
|.. .+++++|...+++.--..+...+..+...+.. .+++++|...++++++.+| +..+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 888 99999999999987212366788888899999 9999999999999999877 5688999999999
Q ss_pred -cCChhHHHHHHHHHHhCCC
Q 047067 410 -AGRLNDAARARKMMKESGV 428 (566)
Q Consensus 410 -~g~~~~a~~~~~~m~~~g~ 428 (566)
.+++++|.+.+++..+.|.
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988764
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=1.3e-12 Score=118.90 Aligned_cols=192 Identities=14% Similarity=-0.020 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 240 (566)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..+|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444445555555555555555544432 2233444444444455555555555555554443 33344444455555
Q ss_pred Hhc-----------CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 241 AKS-----------GSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 241 ~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
.+. |++++|+..|++.. ..+...|..+...|...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 555 66666666666552 2345566666666667777777777777766654 4566666666666
Q ss_pred HccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
...|++++|...|+...+.. +.+...+..+...+.+.|++++|...+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66677777776665544432 224455666666666666666666666554
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.2e-12 Score=121.85 Aligned_cols=197 Identities=9% Similarity=-0.045 Sum_probs=169.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4566777788888888888888888763 3467788999999999999999999999998863 33677888999999
Q ss_pred HccCCHHHHHHHHHhHHhhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGA 383 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 383 (566)
...|++++|..++..+...+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999997666533344 5677888999999999999999999987 3334 5788999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
..++++++..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999998754
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=4.3e-13 Score=124.09 Aligned_cols=142 Identities=17% Similarity=0.131 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL 340 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 340 (566)
..+|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3444445555555555555555555554432 1234444455555555555555555554333322 2234455555555
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|...+++++++.|+++.++..+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 66666666666666554 1122 3456666666666666666666666666666666655554443
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.7e-12 Score=117.02 Aligned_cols=196 Identities=11% Similarity=0.045 Sum_probs=131.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA 305 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 305 (566)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455556666666666666666666552 2345566667777777777777777777776642 2245666667777
Q ss_pred HHcc-CCHHHHHHHHHhHHhhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067 306 CSHA-GLLDEGQGYFALMKKHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL 381 (566)
Q Consensus 306 ~~~~-g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 381 (566)
+... |++++|...++.+.+.+..| +...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 7777 77777777775544422222 2456666777777777777777777766 2233 45677777777777788888
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 382 GAYAAERIFELDP-HDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 382 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
|...++++++..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888877777 7777777777777777888877777777765
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=5.5e-12 Score=114.91 Aligned_cols=211 Identities=9% Similarity=-0.001 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD 238 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 238 (566)
+...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 34456666666666666666666666665532 2233444444444444444444444444444432
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 047067 239 MYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH-GLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 316 (566)
..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|.
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 22445555566666666 666666666666665322233 455666666666777777777
Q ss_pred HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067 317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE--PTAAVWGALLGACRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 393 (566)
..+..+.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+...++.+.+..
T Consensus 134 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 134 AYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7775544432 223566677777777888888888877776 222 355667777777788888888888888888888
Q ss_pred CCCCchHHHH
Q 047067 394 PHDSGPHILL 403 (566)
Q Consensus 394 p~~~~~~~~l 403 (566)
|+++.....+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 8887554433
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=1.2e-12 Score=129.23 Aligned_cols=226 Identities=14% Similarity=0.117 Sum_probs=193.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCChhHHHHHHHHH
Q 047067 196 FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS-IEDAEKVFNRLL---KRDVVSWNSMLTGC 271 (566)
Q Consensus 196 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 271 (566)
..|..+..++...|++++|...+.++++.. +.+..+|+.+..+|.+.|+ +++|+..|+++. ..+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777778889999999999999999987 5678889999999999997 999999999984 44788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh-cCCHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR-AGLLDRA 350 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A 350 (566)
...|++++|+..|+++++.. +-+...|..+..++...|++++|...++.+.+.. +-+...|+.+..+|.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999953 2267889999999999999999999997777765 3467788999999999 6665777
Q ss_pred -----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------C
Q 047067 351 -----LKFIREM-PIEP-TAAVWGALLGACRMHK--NVELGAYAAERIFELDPHDSGPHILLANIYASAG---------R 412 (566)
Q Consensus 351 -----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~ 412 (566)
++.+++. .+.| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.| .
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4777766 4456 5679999999998888 689999999998 899999999999999999875 3
Q ss_pred hhHHHHHHHHH-Hh
Q 047067 413 LNDAARARKMM-KE 425 (566)
Q Consensus 413 ~~~a~~~~~~m-~~ 425 (566)
+++|.++++++ .+
T Consensus 334 ~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 334 LNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999998 55
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=8.4e-13 Score=122.11 Aligned_cols=199 Identities=10% Similarity=0.114 Sum_probs=155.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067 227 QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL 303 (566)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (566)
......+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34455667778888889999999999988743 367888999999999999999999999998863 33678888999
Q ss_pred HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067 304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL 381 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 381 (566)
..+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999997766654 346778888999999999999999999987 3334 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 382 GAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 382 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
|+..++++++..|+++.++..++.+|...|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999998743
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=3.1e-12 Score=130.14 Aligned_cols=342 Identities=11% Similarity=0.005 Sum_probs=209.3
Q ss_pred HHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHHHhCCCc---cHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCC
Q 047067 33 ILNAYAKCGCLDEARKLFDEMPV-KDMVTWTALISGYSQNDQP---ENAIILFSQMLRLGLKPNQFTLSSVLKASGAGAT 108 (566)
Q Consensus 33 li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 108 (566)
+...+.+.|++++|.+.|++... .++..+..|...|...|++ ++|+.+|++..+. +
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~---------------- 68 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----S---------------- 68 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----C----------------
Confidence 34445556666666666665432 2444555555555555555 5666666555432 2
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCC-ChHHHHHHHHHHHhCCChh---HH
Q 047067 109 DDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD-----QMDDAWFLFTALESK-NEVSWNALIAGHARKSEGE---KA 179 (566)
Q Consensus 109 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A 179 (566)
+..+..|..++...+ +.++|.+.|++..++ +..++..|...|...+..+ ++
T Consensus 69 --------------------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 69 --------------------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp ----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCH
T ss_pred --------------------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHH
Confidence 222223333222222 445555555554432 3335555555555544432 34
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhc
Q 047067 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG---SIEDAEKVFNRL 256 (566)
Q Consensus 180 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~ 256 (566)
++.+......| +......+...+...+.++.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++.
T Consensus 129 ~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 129 QQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 44555544444 234455556666666655544444333333322334447788999999999 999999999987
Q ss_pred CC---CChhHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHhHHhhC
Q 047067 257 LK---RDVVSWNSMLTGCAQH----GLGKATVRWFEKMLRNGIAPNQVTFLCVLTA-C--SHAGLLDEGQGYFALMKKHG 326 (566)
Q Consensus 257 ~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~ 326 (566)
.+ ++...+..+...|... +++++|+.+|++.. .| +...+..|... + ...+++++|...|+...+.|
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 43 3444457777777655 79999999999988 33 44555566655 3 56899999999997777766
Q ss_pred CCccHHHHHHHHHHhhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCC
Q 047067 327 VEPEEAHYVTFVDLLGRAG-----LLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
+...+..|..+|. .| ++++|.++|++.- .-+...+..|...|.. ..+.++|...++++.+. .++
T Consensus 282 ---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~ 354 (452)
T 3e4b_A 282 ---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQN 354 (452)
T ss_dssp ---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCT
T ss_pred ---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChH
Confidence 5566677777777 55 9999999999997 5577888888877766 44999999999998875 456
Q ss_pred chHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 047067 398 GPHILLANIYAS----AGRLNDAARARKMMKESGV 428 (566)
Q Consensus 398 ~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 428 (566)
.+...|+.+|.. ..+.++|...+++..+.|.
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 688999999985 4589999999999988775
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=2.1e-12 Score=121.70 Aligned_cols=225 Identities=9% Similarity=-0.002 Sum_probs=162.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHH
Q 047067 200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RD----VVSWNSMLTGCAQ 273 (566)
Q Consensus 200 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~ 273 (566)
.....+...|++++|...+..+++.. +.+...+..+...|...|++++|...|++..+ ++ ..+|..+...|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34445555566666666666665543 23344556666677777777777777776633 22 2347788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH
Q 047067 274 HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF 353 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 353 (566)
.|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888753 2245788888888889999999999986665542 33456676677334445599999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCChhHHHHHH
Q 047067 354 IREM-PIEP-TAAVWGALLGACRMHKN---VELGAYAAERIFELD---PHD-----SGPHILLANIYASAGRLNDAARAR 420 (566)
Q Consensus 354 ~~~~-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 420 (566)
|+++ ...| +...|..+..++...|+ .++|...+++++++. |+. ..+|..++.+|...|++++|...+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9887 4445 46778888888888888 888999999999865 442 247888999999999999999999
Q ss_pred HHHHhCC
Q 047067 421 KMMKESG 427 (566)
Q Consensus 421 ~~m~~~g 427 (566)
+++.+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998743
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=5.3e-13 Score=134.22 Aligned_cols=257 Identities=11% Similarity=0.013 Sum_probs=154.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCcHhHHHHH
Q 047067 167 IAGHARKSEGEKALRTFSEMLREGFEPT-H----FSYSSVFTALASTGSLEQGKWVHAHVIKS----G-GQLVAFVGNTL 236 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 236 (566)
...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|++++|...+.++++. + .+....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444444455544444444431 11 1 23344444444445555555544444332 0 11223344555
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKR---------DVVSWNSMLTGCAQHGL-----------------GKATVRWFEKMLRN 290 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 290 (566)
...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55566666666666655554211 23356666666666676 67777666665442
Q ss_pred ----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-Ccc----HHHHHHHHHHhhhcCCHHHHHHHHHhC---
Q 047067 291 ----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPE----EAHYVTFVDLLGRAGLLDRALKFIREM--- 357 (566)
Q Consensus 291 ----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~--- 357 (566)
+-.| ...++..+...+...|++++|...+....+... .++ ...+..+...|...|++++|...+++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 134666677777778888888777744433210 011 236677788888888888888888766
Q ss_pred -CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 358 -PIEP----TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 358 -~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
+-.. ...++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1011 14577788888999999999999999998764332 34788899999999999999999998875
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.3e-12 Score=130.76 Aligned_cols=262 Identities=13% Similarity=0.057 Sum_probs=152.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CCcHhHH
Q 047067 163 WNALIAGHARKSEGEKALRTFSEMLREGFEPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKS----GG-QLVAFVG 233 (566)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 233 (566)
+......+...|++++|+..|++....+ +.+ ...+..+...+...|++++|...+.++++. +. +....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3334444444455555555554444431 111 123334444444455555555544444322 11 1113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGL--------------------GKATVRWF 284 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 284 (566)
..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5555556666666666665555421 11 2356666666666676 67777766
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC-CCcc----HHHHHHHHHHhhhcCCHHHHHHHH
Q 047067 285 EKMLRN----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG-VEPE----EAHYVTFVDLLGRAGLLDRALKFI 354 (566)
Q Consensus 285 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 354 (566)
++..+. +..| ...++..+...+...|++++|...+....+.. -.++ ...+..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 665442 1111 13456666677777778877777774433221 0111 236677777888888888888887
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHH
Q 047067 355 REM----PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARAR 420 (566)
Q Consensus 355 ~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 420 (566)
++. +-.++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765 11112 4567777888888888999988888888764332 446778888899999999999888
Q ss_pred HHHHh
Q 047067 421 KMMKE 425 (566)
Q Consensus 421 ~~m~~ 425 (566)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=8.3e-13 Score=124.67 Aligned_cols=240 Identities=8% Similarity=-0.117 Sum_probs=167.1
Q ss_pred hcCCHHHHHHHHHhCCCC-------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067 141 RFDQMDDAWFLFTALESK-------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ 213 (566)
Q Consensus 141 ~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 213 (566)
..|++++|...|+++.+. +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677787777776542 35577788888888888888888888887753 3356777888888888888888
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047067 214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG 291 (566)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 291 (566)
|...+..+++.. +.+..++..+..+|.+.|++++|...|+++. .|+...+...+..+...|++++|+..+++.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888888888775 4456777888888888888888888888873 3333334444445566788999999998877752
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC--c-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 047067 292 IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE--P-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWG 367 (566)
Q Consensus 292 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 367 (566)
+++...+ .++..+...++.++|...+......... | +...+..+...|.+.|++++|...|+++ ...|+. +.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 250 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV 250 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence 3343343 3666777778888888888554432211 1 1467788889999999999999999887 556633 22
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 047067 368 ALLGACRMHKNVELGAYAA 386 (566)
Q Consensus 368 ~ll~~~~~~g~~~~a~~~~ 386 (566)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 2344566667777776665
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=2.6e-12 Score=124.74 Aligned_cols=261 Identities=14% Similarity=0.068 Sum_probs=165.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CCcHhHHHH
Q 047067 165 ALIAGHARKSEGEKALRTFSEMLREGFEPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKS----GG-QLVAFVGNT 235 (566)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 235 (566)
.....+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+.++++. +. +....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33444555555555555555555432 111 134444555555555555555555554332 11 112345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGL--------------------GKATVRWFEK 286 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 286 (566)
+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666677777777766665421 11 2366667777777777 7777777776
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh----CCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 287 MLRN----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH----GVEP-EEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 287 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
.... +..| ...++..+...+...|++++|...+....+. +..+ ....+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5442 1111 1346667777788888888888888444322 1111 133677788888899999999888877
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 357 M----PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 357 ~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
. +-.++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 4577788888999999999999999998765432 34777899999999999999999999
Q ss_pred HHhC
Q 047067 423 MKES 426 (566)
Q Consensus 423 m~~~ 426 (566)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=4.9e-12 Score=111.67 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=126.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH
Q 047067 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV 338 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 338 (566)
++..|..+...|.+.|++++|++.|++.++. .| +..++..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 4556777777777777777777777777764 33 45667777777777777777777775554443 23455666677
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA 416 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 416 (566)
..+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7778888888888888776 3334 5678888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 047067 417 ARARKMMKES 426 (566)
Q Consensus 417 ~~~~~~m~~~ 426 (566)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999988764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=8.7e-13 Score=135.13 Aligned_cols=193 Identities=10% Similarity=0.037 Sum_probs=150.0
Q ss_pred CcHhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067 228 LVAFVGNTLVDMYAKSGSI-EDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL 303 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 303 (566)
.+...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|+..|++..+ ..|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3455555566666666666 66666666552 23466777777777788888888888888777 356677777777
Q ss_pred HHHHcc---------CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc--------CCHHHHHHHHHhC-CCCC----
Q 047067 304 TACSHA---------GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA--------GLLDRALKFIREM-PIEP---- 361 (566)
Q Consensus 304 ~a~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p---- 361 (566)
.++... |++++|...++...+.. +.+...|..+..+|... |++++|.+.|++. .+.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 778777 88888888886666543 33566777888888887 8899999999887 4455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
+...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999998765443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.5e-12 Score=130.40 Aligned_cols=287 Identities=11% Similarity=0.018 Sum_probs=196.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-C----hHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-H
Q 047067 128 NVYVGSSLLDMYARFDQMDDAWFLFTALES--K-N----EVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEPT-H 195 (566)
Q Consensus 128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~ 195 (566)
....+..+...+.+.|++++|...|++..+ + + ..+|..+...|...|++++|+..|++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334445566667777777777777776543 2 2 245667777777777777777777765432 11121 3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCcHhHHHHHHHHHHhcCC--------------------HHHHH
Q 047067 196 FSYSSVFTALASTGSLEQGKWVHAHVIKSGG-----QLVAFVGNTLVDMYAKSGS--------------------IEDAE 250 (566)
Q Consensus 196 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~--------------------~~~A~ 250 (566)
.++..+...+...|++++|...+.++++... .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4556666677777777777777776655311 1113466777788888888 88888
Q ss_pred HHHHhcCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHH
Q 047067 251 KVFNRLLK-----R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI-APN----QVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 251 ~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~ 316 (566)
+.|++... . ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 77776521 1 234678888889999999999999988775311 112 347778888899999999999
Q ss_pred HHHHhHHhh----CCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 047067 317 GYFALMKKH----GVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM----PIEPT----AAVWGALLGACRMHKNVELGA 383 (566)
Q Consensus 317 ~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~ 383 (566)
..+...... +..+. ..++..+...|.+.|++++|...+++. +..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 988554432 11111 457788889999999999999998876 11122 457788888999999999999
Q ss_pred HHHHHHHhcCC------CCCchHHHHHHHHHhcCChh
Q 047067 384 YAAERIFELDP------HDSGPHILLANIYASAGRLN 414 (566)
Q Consensus 384 ~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 414 (566)
..+++++++.+ ....++..++.+|...|+..
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999987632 23456777888888877664
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=6.9e-10 Score=116.98 Aligned_cols=416 Identities=9% Similarity=-0.023 Sum_probs=259.9
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCC---ccHHHHHHHHH
Q 047067 11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQ---PENAIILFSQM 84 (566)
Q Consensus 11 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m 84 (566)
-...++..++.+ +.|...|..++....+.+.++.|+.+|+.+. +.....|..-+..-.+.|. ++.+..+|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344566666665 5789999999999999999999999999876 4456678888888888888 99999999998
Q ss_pred HHCC-CCCChhHHHHHHHHHccCCCc----h---HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------cCC
Q 047067 85 LRLG-LKPNQFTLSSVLKASGAGATD----D---KFGRQVHAFCLKY-GY-DWN-VYVGSSLLDMYAR---------FDQ 144 (566)
Q Consensus 85 ~~~g-~~p~~~t~~~ll~a~~~~~~~----~---~~~~~i~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~ 144 (566)
+... ..|+...|..-+.-..+.++. . ...+++|+.++.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8753 247887777766554443332 1 1455777776654 65 553 5678877776542 345
Q ss_pred HHHHHHHHHhCCC-C--C-hHHHHH---HHHHHH----------hCCChhHHHHHHHHHHH--CCCC-------------
Q 047067 145 MDDAWFLFTALES-K--N-EVSWNA---LIAGHA----------RKSEGEKALRTFSEMLR--EGFE------------- 192 (566)
Q Consensus 145 ~~~A~~~f~~~~~-~--~-~~~~~~---li~~~~----------~~g~~~~A~~~~~~m~~--~g~~------------- 192 (566)
++.++++|++... | + ..+|.. +..... ...+++.|...+.++.. .++.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 7888999988764 2 1 123322 221110 01122334444444321 1110
Q ss_pred --C-----C---HHHHHHHHHHHhccC-------ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHH
Q 047067 193 --P-----T---HFSYSSVFTALASTG-------SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE-KVFN 254 (566)
Q Consensus 193 --p-----d---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~ 254 (566)
| + ...|...+.---..+ ..+....+|++++..- +.+..+|-..+..+...|+.++|. ++|+
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 1 123444443332222 1233556777777653 456677777777777778877775 7777
Q ss_pred hcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHHccC
Q 047067 255 RLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---------APN------------QVTFLCVLTACSHAG 310 (566)
Q Consensus 255 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g 310 (566)
+.. ..+...|-..+...-+.|++++|.++|+++++... .|+ ...|...+....+.|
T Consensus 369 rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 369 LGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 763 33555677777777778888888888888776310 132 235666667667777
Q ss_pred CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAE 387 (566)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (566)
..+.|..+|....+....+....|...+.+-.+.+ +.+.|..+|+.. ....+...|...+.-....|+.+.|..+|+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888865554311112334443333334443 478888888766 222355667777777777788888888888
Q ss_pred HHHhcCCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 388 RIFELDPH---DSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 388 ~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
++++..|+ ....+...+..-.+.|..+.+.++.+++.+.-.
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88877663 334566666767777888888888888876543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.2e-11 Score=123.20 Aligned_cols=224 Identities=9% Similarity=-0.034 Sum_probs=151.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-----ChhHHH
Q 047067 201 VFTALASTGSLEQGKWVHAHVIKS----GGQL-VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----R-----DVVSWN 265 (566)
Q Consensus 201 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 265 (566)
....+...|++++|...+.++.+. +-++ ...++..+...|...|++++|...+++..+ + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556777777777777777653 1111 235667777778888888887777776521 1 134677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHhHHhh----CC-CccHHHHH
Q 047067 266 SMLTGCAQHGLGKATVRWFEKMLRNGIA-PN----QVTFLCVLTACSHAGLLDEGQGYFALMKKH----GV-EPEEAHYV 335 (566)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~ 335 (566)
.+...|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+....+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888877653111 11 246777888888888888888888555542 33 33455677
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-CC-----CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 336 TFVDLLGRAGLLDRALKFIREM-PI-----EPTA-AVWGALLGACRMHKN---VELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~~-~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
.+...|.+.|++++|.+.+++. .+ .|.. ..+..+...+...|+ .++|+..+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 7888888888888888888776 11 2222 234566667777787 66666666665 223444457778899
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 047067 406 IYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 406 ~~~~~g~~~~a~~~~~~m~~ 425 (566)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999888865
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=1.7e-10 Score=111.00 Aligned_cols=218 Identities=11% Similarity=0.082 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067 177 EKALRTFSEMLREGFEPTHFSYSSVFTALA-------STGSL-------EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK 242 (566)
Q Consensus 177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (566)
++|+.+|++..... +-+...|...+..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666777766532 234445555555443 34664 6777777777763224455677777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHH
Q 047067 243 SGSIEDAEKVFNRLLK--R-DVV-SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS-HAGLLDEGQG 317 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 317 (566)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788888877777642 2 333 67777777777888888888888877743 223344433332222 2578888888
Q ss_pred HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P---IEP--TAAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 885554432 235667777777777888888888888776 2 344 356777777777778888888888888888
Q ss_pred cCCCCC
Q 047067 392 LDPHDS 397 (566)
Q Consensus 392 ~~p~~~ 397 (566)
..|+++
T Consensus 270 ~~p~~~ 275 (308)
T 2ond_A 270 AFREEY 275 (308)
T ss_dssp HTTTTT
T ss_pred Hccccc
Confidence 777754
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=2e-12 Score=129.95 Aligned_cols=265 Identities=12% Similarity=0.018 Sum_probs=195.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--C-Ch----HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CC-CCCHHHH
Q 047067 131 VGSSLLDMYARFDQMDDAWFLFTALES--K-NE----VSWNALIAGHARKSEGEKALRTFSEMLRE----GF-EPTHFSY 198 (566)
Q Consensus 131 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t~ 198 (566)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++.... +- .....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344566677888888888888887653 2 32 46778888888888888888888877543 11 1223566
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhC-----CCCcHhHHHHHHHHHHhcCC-----------------HHHHHHHHHhc
Q 047067 199 SSVFTALASTGSLEQGKWVHAHVIKSG-----GQLVAFVGNTLVDMYAKSGS-----------------IEDAEKVFNRL 256 (566)
Q Consensus 199 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~ 256 (566)
..+...+...|++++|...+.++++.. .+....++..+...|...|+ +++|.+.|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 677778888888888888888776541 12334577788888999999 88888888775
Q ss_pred CC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHhH
Q 047067 257 LK-----R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PN----QVTFLCVLTACSHAGLLDEGQGYFALM 322 (566)
Q Consensus 257 ~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 322 (566)
.+ . ...+|..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|...++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 32 1 2357888889999999999999999988763111 12 237788888999999999999999554
Q ss_pred HhhCCC-----ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047067 323 KKHGVE-----PEEAHYVTFVDLLGRAGLLDRALKFIREM-PI---EPT----AAVWGALLGACRMHKNVELGAYAAERI 389 (566)
Q Consensus 323 ~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 389 (566)
...... .....+..+...|...|++++|...+++. .+ .++ ..++..+...+...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 432111 12467788899999999999999999876 11 112 347788889999999999999999999
Q ss_pred HhcCCC
Q 047067 390 FELDPH 395 (566)
Q Consensus 390 ~~~~p~ 395 (566)
+++.+.
T Consensus 370 l~~~~~ 375 (411)
T 4a1s_A 370 LQLAXX 375 (411)
T ss_dssp HHHCCH
T ss_pred HHHHhh
Confidence 987653
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.6e-11 Score=108.38 Aligned_cols=168 Identities=10% Similarity=0.071 Sum_probs=138.9
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 304 (566)
.+..+|..+...|.+.|++++|++.|++.. ..++.+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 356778888889999999999999998873 3467888899999999999999999999988753 224667777778
Q ss_pred HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067 305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 382 (566)
.+...++++.+...+....... +.+...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888999999999996666543 345677888999999999999999999887 4455 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 047067 383 AYAAERIFELDPHDS 397 (566)
Q Consensus 383 ~~~~~~~~~~~p~~~ 397 (566)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=123.29 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------C-CC
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLRE-------GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS------G-GQ 227 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~ 227 (566)
+|..+...|...|++++|+.+|+++... ..+.....+..+...+...|++++|...+.++++. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444444444444444444331 11112233334444444444444444444444332 1 11
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN------ 290 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 290 (566)
....++..+...|...|++++|...|++..+ ....+|..+...|...|++++|++.|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1233444445555555555555555444321 01234555555555566666666666555442
Q ss_pred CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhH
Q 047067 291 GIAPN-QVTFLCVLTACSHAGLLDEGQGYFALM 322 (566)
Q Consensus 291 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 322 (566)
+..|+ ..++..+...+...|++++|...+..+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11222 234455555555556666665555333
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.4e-11 Score=131.46 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH
Q 047067 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV 338 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 338 (566)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|...|+...+.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456777777777777788888887777773 444 5677777777888888888888886655543 23466778888
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA 416 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 416 (566)
.+|.+.|++++|.+.|++. .+.| +...|+.+..++...|++++|+..++++++++|+++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888877 4456 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047067 417 ARARKMMKE 425 (566)
Q Consensus 417 ~~~~~~m~~ 425 (566)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888754
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=1.3e-11 Score=119.70 Aligned_cols=263 Identities=12% Similarity=0.035 Sum_probs=178.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--C-C----hHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHH
Q 047067 133 SSLLDMYARFDQMDDAWFLFTALES--K-N----EVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEP-THFSYSS 200 (566)
Q Consensus 133 ~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ 200 (566)
......+.+.|++++|...|++..+ + + ...|..+...|...|++++|++.+++.... +..| ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445566677777777777776543 2 2 345667777777777777777777765432 1111 1345666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCC-CC----cHhHHHHHHHHHHhcCC--------------------HHHHHHHHHh
Q 047067 201 VFTALASTGSLEQGKWVHAHVIKSGG-QL----VAFVGNTLVDMYAKSGS--------------------IEDAEKVFNR 255 (566)
Q Consensus 201 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 255 (566)
+...+...|++++|...+.+.++... .+ ...++..+...|...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66777777888888777777655321 11 13366677778888888 8888877776
Q ss_pred cCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067 256 LLK-----R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI-APN----QVTFLCVLTACSHAGLLDEGQGYFAL 321 (566)
Q Consensus 256 ~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 321 (566)
... . ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...+..
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 521 1 234677888888899999999999988765311 111 33677888888899999999998855
Q ss_pred HHhhC----CCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067 322 MKKHG----VEP-EEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPT----AAVWGALLGACRMHKNVELGAYAAER 388 (566)
Q Consensus 322 ~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 388 (566)
..... ..+ ....+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44321 111 1456778888999999999999998876 11112 34777888899999999999999999
Q ss_pred HHhcCCC
Q 047067 389 IFELDPH 395 (566)
Q Consensus 389 ~~~~~p~ 395 (566)
++++.+.
T Consensus 329 a~~~~~~ 335 (338)
T 3ro2_A 329 HLEISRE 335 (338)
T ss_dssp HHHC---
T ss_pred HHHHHHh
Confidence 9987654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.8e-12 Score=123.28 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=170.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHh-------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C
Q 047067 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKS-------GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-------R 259 (566)
Q Consensus 194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 259 (566)
+..++..+...+...|++++|..++.++++. ..+....++..+...|...|++++|...|++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467788888999999999999999999874 3345567788899999999999999999988732 1
Q ss_pred ----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh---
Q 047067 260 ----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN------GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH--- 325 (566)
Q Consensus 260 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--- 325 (566)
...+|..+...|...|++++|+..|+++.+. +-.| ....+..+...+...|++++|..++....+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999998874 2223 3456788888999999999999999665554
Q ss_pred ---CCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 047067 326 ---GVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-P---------IEPT-------AAVWGALLGACRMHKNVELGAY 384 (566)
Q Consensus 326 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~ll~~~~~~g~~~~a~~ 384 (566)
+..| ....+..+...|.+.|++++|.+.++++ . ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2233 3457888999999999999999999876 1 1111 1222233344455566777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 385 AAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 385 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+++.....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999998865
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=1.8e-10 Score=110.84 Aligned_cols=212 Identities=9% Similarity=0.046 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChhHHHHHHHHHHH
Q 047067 212 EQGKWVHAHVIKSGGQLVAFVGNTLVDMYA-------KSGSI-------EDAEKVFNRLLK---R-DVVSWNSMLTGCAQ 273 (566)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 273 (566)
++|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888864 567778888887776 35885 899999998743 3 56789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh-hcCCHHHH
Q 047067 274 HGLGKATVRWFEKMLRNGIAPNQ-V-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG-RAGLLDRA 350 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 350 (566)
.|++++|..+|++.++ +.|+. . .|..+...+.+.|++++|..+|+...+.. +++...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998 56653 3 78999999999999999999997766643 334555554444422 37999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 351 LKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFEL---DPH-DSGPHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 351 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
..+|++. ...| +...|..++..+...|+.++|..+++++++. .|+ ....+..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988 2234 6789999999999999999999999999995 453 56688889999999999999999999998
Q ss_pred hCC
Q 047067 425 ESG 427 (566)
Q Consensus 425 ~~g 427 (566)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 754
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=1.3e-10 Score=115.47 Aligned_cols=299 Identities=12% Similarity=-0.013 Sum_probs=190.5
Q ss_pred CCchhHHHHHHHHH--HhcCCHHHHHHHHHhCCC--------CChHHHHHHHHH--HHhCCChhHHH---------HHHH
Q 047067 126 DWNVYVGSSLLDMY--ARFDQMDDAWFLFTALES--------KNEVSWNALIAG--HARKSEGEKAL---------RTFS 184 (566)
Q Consensus 126 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~ 184 (566)
.|+..+-+.|-+-| .+.+++++|.++++++.+ .++..|-.++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555666555 777888888877776432 133334443332 11112222222 5555
Q ss_pred HHHHCCCCCCH-H---HHHHHHHHHhccCChHHHHHHHHHHHHhCC--C---CcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067 185 EMLREGFEPTH-F---SYSSVFTALASTGSLEQGKWVHAHVIKSGG--Q---LVAFVGNTLVDMYAKSGSIEDAEKVFNR 255 (566)
Q Consensus 185 ~m~~~g~~pd~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (566)
.+.....+.+. . .+......+...|++++|...+.++.+... + ....++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1 122234455678888888888888776421 1 1245667788888888888888888776
Q ss_pred cCC-----C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 256 LLK-----R-----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 256 ~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
..+ + ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+..++...|++++|...+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 521 1 1356788888899999999999998887663 1111 13467778888889999999999885
Q ss_pred hHHhh----CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---HHHHHHHH
Q 047067 321 LMKKH----GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PI--EPTA-AVWGALLGACRMHKN---VELGAYAA 386 (566)
Q Consensus 321 ~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~ll~~~~~~g~---~~~a~~~~ 386 (566)
..... +.+....++..+...|.+.|++++|...+++. +. .|.. ..+..+...+...++ +++|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55541 32333667788888999999999999998876 11 2332 345555566777777 67777766
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 387 ERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 387 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
++. ...|.....+..++..|...|++++|...+++..+
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 652 22233445677899999999999999999988764
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=1.2e-10 Score=115.90 Aligned_cols=228 Identities=8% Similarity=-0.016 Sum_probs=168.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC------CCcHhHHH
Q 047067 166 LIAGHARKSEGEKALRTFSEMLREG-FEPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKSGG------QLVAFVGN 234 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~~~g-~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 234 (566)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+.+.++... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4556677788888888888776531 0122 34666777777888888888888877765411 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 047067 235 TLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GI-APNQVTFL 300 (566)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 300 (566)
.+...|...|++++|.+.|++..+ ++ ..+|+.+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999988887631 12 247888999999999999999999998772 23 33466788
Q ss_pred HHHHHHHccCCHHHHHHHHHhHHhh----CCCccHHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 047067 301 CVLTACSHAGLLDEGQGYFALMKKH----GVEPEEAHYVTFVDLLGRAGL---LDRALKFIREMPIEPTA-AVWGALLGA 372 (566)
Q Consensus 301 ~ll~a~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 372 (566)
.+...+...|++++|...++..... +-+.....+..+...|...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999554432 112223346678888999999 99999999998655544 467788889
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 047067 373 CRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~ 393 (566)
+...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.7e-09 Score=107.00 Aligned_cols=259 Identities=13% Similarity=0.043 Sum_probs=167.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCc----HhHHHHHH
Q 047067 167 IAGHARKSEGEKALRTFSEMLREGFEPTHF----SYSSVFTALASTGSLEQGKWVHAHVIKSGG-QLV----AFVGNTLV 237 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li 237 (566)
...+...|++++|...+++........+.. ++..+...+...|++++|...+.+..+... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556666777777666665543111221 334444556666777777777666654311 011 22345566
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHH
Q 047067 238 DMYAKSGSIEDAEKVFNRLLK----------R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA--P--NQVTFLCV 302 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~l 302 (566)
..|...|++++|.+.+++... + ....+..+...+...|++++|...+++....... | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777778888888877776521 1 1235566777788888888888888887763221 1 23567777
Q ss_pred HHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHH-----HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 047067 303 LTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYV-----TFVDLLGRAGLLDRALKFIREM-PIEPT-----AAVWGALL 370 (566)
Q Consensus 303 l~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll 370 (566)
...+...|++++|...++......-.++ ...+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7788888999999988855443311111 11111 2334577899999999999887 22221 23566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
..+...|++++|...++++++..+.. ...+..++.+|...|++++|...+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88889999999999999988754321 13667788999999999999999988865
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=1.5e-10 Score=101.57 Aligned_cols=160 Identities=15% Similarity=0.035 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067 231 FVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307 (566)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 307 (566)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------
Confidence 3444555556666666666666665532 234455555555555555555555555555431
Q ss_pred ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047067 308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGACRMHKNVELGAYA 385 (566)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 385 (566)
+.+...+..+...|...|++++|.+.++++ .. ..+...|..+...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 123344445555555555555555555554 11 23456666777777777777777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 386 AERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 386 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
++++++..|.++.++..++.+|...|++++|...++++.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777888888888888888877777653
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=2.4e-10 Score=104.55 Aligned_cols=188 Identities=10% Similarity=-0.037 Sum_probs=104.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLL---K-RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVL 303 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 303 (566)
|+..+..+...|.+.|++++|...|++.. . ++...|..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 34555556666666666666666666552 2 45555555666666666666666666666653 333 44555666
Q ss_pred HHHHccCCHHHHHHHHHhHHhhCCCccH-------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 047067 304 TACSHAGLLDEGQGYFALMKKHGVEPEE-------AHYVTFVDLLGRAGLLDRALKFIREM-PIEPT---AAVWGALLGA 372 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~ 372 (566)
.++...|++++|...++...+... .+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 666666666666666644444321 122 33555555566666666666666655 44454 2345555544
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+.. .+...++++..+.+.++..|.. ......+.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 432 3334445555555544333322 2233445568888888888763
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=5.7e-10 Score=102.04 Aligned_cols=204 Identities=7% Similarity=0.037 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 047067 193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLT 269 (566)
Q Consensus 193 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 269 (566)
.|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|++.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888999999999999999999999988547777777799999999999999999998842 35678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc---HHHHHHHH
Q 047067 270 GCAQHGLGKATVRWFEKMLRNGIAPN-Q-------VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE---EAHYVTFV 338 (566)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li 338 (566)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|....+. .|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999985 444 3 45778888889999999999999776654 454 56777788
Q ss_pred HHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 339 DLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
..|...|+. .++++ .+ ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766543 23332 11 22344444333 33456789999999999999999987777666554
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=2.4e-10 Score=116.90 Aligned_cols=208 Identities=14% Similarity=0.057 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 176 GEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSL-EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN 254 (566)
Q Consensus 176 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 254 (566)
.+++++.+++.... .+.+...+..+..++...|++ ++|...++++++.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555544332 123455555666666666666 66666666666654 3345566666667777777777777776
Q ss_pred hcC--CCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCHHHH
Q 047067 255 RLL--KRDVVSWNSMLTGCAQH---------GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA--------GLLDEG 315 (566)
Q Consensus 255 ~~~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a 315 (566)
+.. .|+...|..+...|... |++++|+..|++..+.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 652 34456666666666666 77777777777776642 22356666666666666 677777
Q ss_pred HHHHHhHHhhCCC--ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047067 316 QGYFALMKKHGVE--PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAA 386 (566)
Q Consensus 316 ~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (566)
...|+...+.... .+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777555544210 25666777777777777777777777766 3334 3456666666676666666666543
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=1.6e-08 Score=106.54 Aligned_cols=371 Identities=8% Similarity=0.002 Sum_probs=253.1
Q ss_pred CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCC---chHHHHHHHHHHHHhC-CCCchh
Q 047067 55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGAT---DDKFGRQVHAFCLKYG-YDWNVY 130 (566)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---~~~~~~~i~~~~~~~g-~~~~~~ 130 (566)
+.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .. .+..+++..+... .+|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~-~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAA-VIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHH-HHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHhcCCCCCHH
Confidence 458889999999999999999999999999985 44455667777777777777 77 8999999988864 247888
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHhCC------CC-ChHHHHHHHHHHH---------hCCChhHHHHHHHHH
Q 047067 131 VGSSLLDMYARFDQM--------DDAWFLFTALE------SK-NEVSWNALIAGHA---------RKSEGEKALRTFSEM 186 (566)
Q Consensus 131 ~~~~li~~y~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 186 (566)
.|...+....+.++. +...++|+... .+ +...|...+.... .+++.+.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888888776666554 33457777632 22 4568888886543 234567788999998
Q ss_pred HHCCCCCCHHHHH---HHHHHHhc----------cCChHHHHHHHHHHHHh--CC----CC-------------------
Q 047067 187 LREGFEPTHFSYS---SVFTALAS----------TGSLEQGKWVHAHVIKS--GG----QL------------------- 228 (566)
Q Consensus 187 ~~~g~~pd~~t~~---~ll~~~~~----------~~~~~~a~~~~~~~~~~--~~----~~------------------- 228 (566)
+......-..+|. ..-..... ...++.|+..+.++.+. ++ +.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 8521111122332 22222100 11223344444443321 11 11
Q ss_pred cHhHHHHHHHHHHhcC-------CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHH
Q 047067 229 VAFVGNTLVDMYAKSG-------SIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATV-RWFEKMLRNGIAPNQV 297 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~ 297 (566)
....|...++.--..+ ..+.+..+|++.. ..+...|-..+.-+...|+.++|. ++|++.... .+.+..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 0245555555433332 1334566787763 347788988888888899999997 999999874 344555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhC---------CCc------------cHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHG---------VEP------------EEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---------~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
.+...+......|+++.|..+|+.+.... -.| ...+|...++...+.|.++.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777888888999999999996655431 013 234788888988999999999999998
Q ss_pred C-CC--CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 357 M-PI--EPTAAVWGALLGACRM-HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 357 ~-~~--~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
+ .. .+....|......-.. .++.+.|..+|+++++..|+++..+...+......|+.+.|+.+|++......
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 7 21 1233444333333233 35699999999999999999988888889988999999999999999987654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=9.4e-10 Score=96.39 Aligned_cols=168 Identities=17% Similarity=0.090 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 047067 195 HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGC 271 (566)
Q Consensus 195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 271 (566)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777888999999999999999987764 4567888999999999999999999999874 34677888889999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (566)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..++....+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------------
Confidence 99999999999999888752 2344555555555555566666655554333221
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
..+...|..+...+...|++++|...++++++..|+++
T Consensus 141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 12345666666667777777777777777777666654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=1e-08 Score=101.55 Aligned_cols=228 Identities=9% Similarity=-0.020 Sum_probs=166.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C-CcHhHH
Q 047067 165 ALIAGHARKSEGEKALRTFSEMLREGF-EPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKSGG-----Q-LVAFVG 233 (566)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 233 (566)
.....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+.+.++... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456778888888888887765311 122 34566677777888888888888877765311 1 124566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GIAPNQVTFL 300 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~ 300 (566)
+.+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 7788888889999998888877632 12 356788888999999999999999988761 2222367788
Q ss_pred HHHHHHHccCCHHHHHHHHHhHHhhC----CCccHHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 047067 301 CVLTACSHAGLLDEGQGYFALMKKHG----VEPEEAHYVTFVDLLGRAGL---LDRALKFIREMPIEPTA-AVWGALLGA 372 (566)
Q Consensus 301 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 372 (566)
.+...+.+.|++++|...++...... -+.....+..+...|...|+ +.+|...+++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 88899999999999999996555432 22224456777778888888 89999999987545544 466778888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 047067 373 CRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~ 392 (566)
|...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=8.7e-10 Score=105.11 Aligned_cols=216 Identities=12% Similarity=0.026 Sum_probs=117.9
Q ss_pred CHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 047067 144 QMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEPT-HFSYSSVFTALASTGSLEQGKWVH 218 (566)
Q Consensus 144 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~ 218 (566)
++++|...|++. ...|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366776665543 56677777777777777766442 21111 234555555555555555555555
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C-
Q 047067 219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH-GLGKATVRWFEKMLRNGIAP-N- 295 (566)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~- 295 (566)
++.++. +.+.|+...+ ..+|+.+...|... |++++|+..|++.++..... +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 554432 1111221111 23455666666664 77777777777665521000 1
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-
Q 047067 296 ---QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE------AHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAA- 364 (566)
Q Consensus 296 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~- 364 (566)
..++..+...+...|++++|...|+...+....... ..|..+..++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 235666666777777777777777555543322111 14556666677777777777777766 4444321
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 047067 365 -----VWGALLGACR--MHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 365 -----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
.+..++.++. ..+++++|+..++++.+++|..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2334444543 3456777777777766666654
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=7.8e-09 Score=102.20 Aligned_cols=262 Identities=9% Similarity=-0.040 Sum_probs=174.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC----CCCh----HHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCH----HHHH
Q 047067 133 SSLLDMYARFDQMDDAWFLFTALE----SKNE----VSWNALIAGHARKSEGEKALRTFSEMLREGF-EPTH----FSYS 199 (566)
Q Consensus 133 ~~li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~ 199 (566)
..+...+...|++++|...+++.. ..+. .+++.+...+...|++++|.+.+++...... .++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455667788888888776632 2222 2456667778888888888888887754210 1122 2345
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------ChhHH
Q 047067 200 SVFTALASTGSLEQGKWVHAHVIKS----GGQ--L-VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R------DVVSW 264 (566)
Q Consensus 200 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~ 264 (566)
.+...+...|++++|...+++.++. +.. | ....+..+...|...|++++|...+++... + ...+|
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5667778888888888888877653 221 2 334566677888889999999988887521 1 13467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHccCCHHHHHHHHHhHHhhCCCc---cHHHHH
Q 047067 265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFL-----CVLTACSHAGLLDEGQGYFALMKKHGVEP---EEAHYV 335 (566)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~ 335 (566)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+.........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788888899999999999998875321221 11111 23344678899999999986554432211 123466
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067 336 TFVDLLGRAGLLDRALKFIREM-------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDP 394 (566)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 394 (566)
.+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++++++.+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 7788889999999999988776 211122 2556667778889999999999999887653
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=2.9e-10 Score=108.48 Aligned_cols=187 Identities=9% Similarity=-0.017 Sum_probs=128.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHH
Q 047067 238 DMYAKSGSIEDAEKVFNRLLK-------R--DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---AP--NQVTFLCVL 303 (566)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll 303 (566)
..|...|++++|...|++... + ...+|+.+...|...|++++|+..|++.++... .+ -..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666665421 1 135677888888888888888888888765211 11 145788888
Q ss_pred HHHHcc-CCHHHHHHHHHhHHhhCCC---c-c-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHH
Q 047067 304 TACSHA-GLLDEGQGYFALMKKHGVE---P-E-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT---A-----AVWGA 368 (566)
Q Consensus 304 ~a~~~~-g~~~~a~~~~~~~~~~~~~---p-~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~ 368 (566)
..|... |++++|...|+...+.... + . ..++..+...|.+.|++++|...|++. .+.|+ . ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 9999999999655543211 1 1 356888999999999999999999987 22232 1 25777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCChhHHHHHHHHHH
Q 047067 369 LLGACRMHKNVELGAYAAERIFELDPHDSGP-----HILLANIYA--SAGRLNDAARARKMMK 424 (566)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~ 424 (566)
+..++...|+++.|...+++.++++|+.... +..++..|. ..+++++|...++.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 8888999999999999999999999986543 344566664 4577888888776553
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=1e-09 Score=117.11 Aligned_cols=163 Identities=10% Similarity=0.120 Sum_probs=128.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVL 303 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 303 (566)
.+...++.|..+|.+.|++++|++.|++.. ..+..+|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345667778888888888888888888763 335678888888888888888888888888874 454 67788888
Q ss_pred HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067 304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL 381 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 381 (566)
.++...|++++|.+.|+...+.. +-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888886666553 234677888888899999999999998887 5556 45788889999999999999
Q ss_pred HHHHHHHHHhcC
Q 047067 382 GAYAAERIFELD 393 (566)
Q Consensus 382 a~~~~~~~~~~~ 393 (566)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999888754
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=9.3e-10 Score=103.74 Aligned_cols=220 Identities=13% Similarity=0.104 Sum_probs=156.8
Q ss_pred hccCChHHHHHHHHHHHHh-------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhHHHHH
Q 047067 206 ASTGSLEQGKWVHAHVIKS-------GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--------R---DVVSWNSM 267 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l 267 (566)
...|+++.|...+++.++. ..+....++..+...|...|++++|...|++... . ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4678888888888887663 2234567788899999999999999999988631 1 34678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh------CCCc-cHHH
Q 047067 268 LTGCAQHGLGKATVRWFEKMLRN------GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH------GVEP-EEAH 333 (566)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~ 333 (566)
...|...|++++|+..|++..+. .-.| ...++..+...+...|++++|..++....+. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998774 1123 3567888889999999999999999665554 1123 3567
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCC
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM----------PIEPT-AAVWGALLGACRMHKNV------ELGAYAAERIFELDPHD 396 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~ 396 (566)
+..+...|.+.|++++|.+.+++. ...+. ...|..+.......+.. ..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999876 11222 23444444444333332 22222333222234555
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 397 SGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 397 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66888999999999999999999998875
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=1.7e-08 Score=94.33 Aligned_cols=205 Identities=10% Similarity=0.005 Sum_probs=123.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-D---VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI-APN-QVTFL 300 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 300 (566)
+...+-.+...+.+.|++++|...|+++.+ | + ..+|..+..+|.+.|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455556666666677777666666632 2 2 34566666666666666666666666666321 111 23444
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047067 301 CVLTACSH--------AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA 372 (566)
Q Consensus 301 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~ 372 (566)
.+..++.. .|++++|...|+...+.... +......+.......+.+ ...+..+...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 55555555 56666666666444433211 111111111000000000 1123566788
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeEEEe
Q 047067 373 CRMHKNVELGAYAAERIFELDPHDS---GPHILLANIYASA----------GRLNDAARARKMMKESGVKKEPACSWVET 439 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 439 (566)
+...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+...
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------- 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------- 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------
Confidence 9999999999999999999999854 4788899999877 899999999999987432
Q ss_pred CCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 047067 440 KNAVHMFVANDDAHPQRAMIHKKWREISEKIKQ 472 (566)
Q Consensus 440 ~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (566)
.+|...+....+.++...+.+
T Consensus 227 ------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHHH
Confidence 234556666666677666654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=6.5e-08 Score=90.73 Aligned_cols=199 Identities=7% Similarity=-0.067 Sum_probs=90.5
Q ss_pred HHhcCCHHHHHHHHHhCCCCCh-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067 139 YARFDQMDDAWFLFTALESKNE-VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV 217 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 217 (566)
..-.|.+..+..-...+...+. ..---+.++|...|++.... .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3445777777665555543222 22223446666666665321 1123322322222222 211 3444
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047067 218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI 292 (566)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (566)
+++.++.+ .++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 44444433 23333334555566666666666666655422 1334455555556666666666666666655 2
Q ss_pred CC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 293 AP-----NQVTFLCVLTAC--SHAG--LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 293 ~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
.| +..+...|..++ ...| ++.+|..+|+.+.+. .|+......+..++.+.|++++|.+.++.
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44 234444444442 1122 555555555443322 12211112222244555555555555543
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=6.7e-09 Score=97.77 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 047067 232 VGNTLVDMYAKSGSIEDAEKVFNRLLK-------R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN------GIAP 294 (566)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 294 (566)
++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+..|++..+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344444455555555555554444311 1 2344555666666666666666666666553 1122
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh-------CCCcc-HHHHHHHHHHhhh------cCCHHHHHHHHHhCC-
Q 047067 295 -NQVTFLCVLTACSHAGLLDEGQGYFALMKKH-------GVEPE-EAHYVTFVDLLGR------AGLLDRALKFIREMP- 358 (566)
Q Consensus 295 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~~~- 358 (566)
...++..+...+...|++++|..++....+. ...+. ...+..+...+.. ...+.++...++...
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 2345666666677777777777776444332 11111 1222222222222 233445555555553
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067 359 IEPT-AAVWGALLGACRMHKNVELGAYAAERIFEL 392 (566)
Q Consensus 359 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 392 (566)
..|+ ..++..+...+...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2233 357788888899999999999999998865
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=7.2e-10 Score=94.04 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=89.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRA 350 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (566)
...|++++|++.+++.... .|+ ...+..+...|.+.|++++|...|+...+.. +-+...|..+..+|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3344555555555554432 222 2334445555555666666666664444432 22455666677777777777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067 351 LKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYA-AERIFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 351 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
...|++. .+.| +...|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777766 4455 467888888888888888766554 589999999999888888888877764
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1.8e-08 Score=82.83 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG 342 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (566)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..++..+....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 45556666666666666666666665532 1234444444445555555555555553333221
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 343 RAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
..+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...+++
T Consensus 66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 123445555566666666666666666666666666666666666666666777777666666
Q ss_pred HHh
Q 047067 423 MKE 425 (566)
Q Consensus 423 m~~ 425 (566)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=1.6e-07 Score=88.06 Aligned_cols=174 Identities=10% Similarity=0.009 Sum_probs=91.6
Q ss_pred HHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHh
Q 047067 249 AEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKK 324 (566)
Q Consensus 249 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 324 (566)
|+..|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.+.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555543 2334444455566666666666666666655543211 344555555666666666666666655544
Q ss_pred hCCCc-----cHHHHHHHHHH--h--hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 047067 325 HGVEP-----EEAHYVTFVDL--L--GRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFEL-- 392 (566)
Q Consensus 325 ~~~~p-----~~~~~~~li~~--~--~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 392 (566)
. .| +..+...|..+ . ...++..+|..+|+++ ...|+..+-..+++++...|++++|++.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3 33 22333333333 1 2223666666666666 22344223333344566666666666666655554
Q ss_pred --------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 393 --------DPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 393 --------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+|+++.++..++..+...|+ +|.++++++++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 35566666555555555554 566666666553
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=3.3e-08 Score=81.16 Aligned_cols=123 Identities=15% Similarity=0.273 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067 232 VGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308 (566)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 308 (566)
.+..+...|...|++++|..+|+++. ..+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 46778899999999999999999873 3467889999999999999999999999998863 3356667777777777
Q ss_pred cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
.|++++|..++..+.... +.+...+..+...|.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 888888887775555432 22334444455555555555555554444
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.7e-09 Score=114.21 Aligned_cols=168 Identities=11% Similarity=-0.043 Sum_probs=131.3
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 047067 241 AKSGSIEDAEKVFNRLL-----------KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSH 308 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 308 (566)
...|++++|++.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788888888888775 345677888888888889999999888888874 33 56678888888888
Q ss_pred cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047067 309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAA 386 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 386 (566)
.|++++|...|+...+.. +.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999988886666554 2346677788888888888888 8888876 3445 5578888888888999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067 387 ERIFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 387 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
+++++++|++..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999888888888888877665
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=2.4e-08 Score=94.79 Aligned_cols=174 Identities=9% Similarity=-0.035 Sum_probs=132.6
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC
Q 047067 248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG 326 (566)
Q Consensus 248 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 326 (566)
.....+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.....
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444444455566777777888888888888888888874 44 4667778888888889999999988665543
Q ss_pred CCccHHHHH-HHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHH
Q 047067 327 VEPEEAHYV-TFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD--SGPHI 401 (566)
Q Consensus 327 ~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 401 (566)
.|+..... .....+.+.++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 34433222 2233466777788888888776 3345 56789999999999999999999999999999988 78899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 047067 402 LLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.|+.+|...|+.++|...+++...
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999988877643
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=1.4e-08 Score=94.87 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----ChhH
Q 047067 193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLV---AFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R----DVVS 263 (566)
Q Consensus 193 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 263 (566)
.+...+......+...|++++|...++.+++... .+ ...+..+..+|.+.|++++|...|++..+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3566777788889999999999999999998753 23 56778899999999999999999999843 2 2356
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHH
Q 047067 264 WNSMLTGCAQ--------HGLGKATVRWFEKMLRNGIAPNQ-VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHY 334 (566)
Q Consensus 264 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 334 (566)
+..+..++.. .|++++|+..|++.++. .|+. .....+ ..+..... -....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~----~~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHH----HHHHHH
Confidence 7788888988 99999999999999985 3442 121111 11100000 011235
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCch
Q 047067 335 VTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMH----------KNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778899999999999999887 22333 35677777777755 88999999999999999998643
Q ss_pred ---HHHHHHHHHhcCChh
Q 047067 400 ---HILLANIYASAGRLN 414 (566)
Q Consensus 400 ---~~~l~~~~~~~g~~~ 414 (566)
...+..++...++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=7.6e-08 Score=86.72 Aligned_cols=172 Identities=8% Similarity=-0.007 Sum_probs=128.2
Q ss_pred HHHHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHhHH
Q 047067 249 AEKVFNRLL-KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG----LLDEGQGYFALMK 323 (566)
Q Consensus 249 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 323 (566)
|.+.|++.. ..++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444432 3456667777777777778888888888777754 45566666666666 5 7888888886666
Q ss_pred hhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 047067 324 KHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREM-PIEPT---AAVWGALLGACRM----HKNVELGAYAAERIFE 391 (566)
Q Consensus 324 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 391 (566)
+.+ +...+..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|+..++++.+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 544 45566677777776 78899999999887 43443 6788888888887 7899999999999998
Q ss_pred cCCCCCchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 047067 392 LDPHDSGPHILLANIYASA-G-----RLNDAARARKMMKESGV 428 (566)
Q Consensus 392 ~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 428 (566)
. |.++.++..|+.+|... | ++++|...+++..+.|.
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8 66677899999999764 3 89999999999988764
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=7.1e-08 Score=87.85 Aligned_cols=180 Identities=8% Similarity=-0.061 Sum_probs=116.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 047067 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ----VTF 299 (566)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 299 (566)
...+..+...+.+.|++++|+..|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455567778888888888888888742 22 246777888888888888888888888874 3332 133
Q ss_pred HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHH-----------
Q 047067 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVW----------- 366 (566)
Q Consensus 300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~----------- 366 (566)
..+..++...+.. . ...|..+...+...|++++|...|+++ ...|+. ..+
T Consensus 82 ~~~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 3344444331100 0 001111222233445556666655555 223321 111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 367 ------GALLGACRMHKNVELGAYAAERIFELDPHDS---GPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 367 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
..+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 2345667889999999999999999999876 4688999999999999999999999987654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=2.7e-08 Score=86.75 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=62.2
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 350 ALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD--SGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 350 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
|...+++. ...| +...+..+..++...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45555554 3345 56788889999999999999999999999999875 55889999999999999999999887654
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=2.5e-06 Score=87.11 Aligned_cols=200 Identities=11% Similarity=-0.003 Sum_probs=103.1
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhCCC-ccHHHHHHHH
Q 047067 7 KLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISGYSQNDQ-PENAIILFSQ 83 (566)
Q Consensus 7 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~ 83 (566)
++..|+.++++.+..= |. |+++.|..+|++.. .|++..|..-+.-..+.+. .+....+|+.
T Consensus 10 ~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3677788888777642 22 78888999998754 4688888887776666553 3556677777
Q ss_pred HHHC-CCCC-ChhHHHHHHHHHcc----CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCC
Q 047067 84 MLRL-GLKP-NQFTLSSVLKASGA----GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR-------------FDQ 144 (566)
Q Consensus 84 m~~~-g~~p-~~~t~~~ll~a~~~----~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~ 144 (566)
.+.. |..| +...|...+.-+.. .++.+ .++.+++.+++.....-..+|......-.. .+.
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~-~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE-KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH-HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH-HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 6653 4333 45566666655432 23444 677888887763221111222222111100 011
Q ss_pred HHHHHHHHHhCCC----CChHHHHHHHHHHHhCCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067 145 MDDAWFLFTALES----KNEVSWNALIAGHARKSE-------GEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ 213 (566)
Q Consensus 145 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 213 (566)
+..|+.+++.+.. .+...|...+.--..++. .+.+..+|+++... .+.+...|...+..+...|+.+.
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 2223333322211 133345544443222110 22345566665553 23344555555555566666666
Q ss_pred HHHHHHHHHHh
Q 047067 214 GKWVHAHVIKS 224 (566)
Q Consensus 214 a~~~~~~~~~~ 224 (566)
|..+++..++.
T Consensus 232 ar~i~erAi~~ 242 (493)
T 2uy1_A 232 AKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 66666666666
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.5e-07 Score=100.69 Aligned_cols=189 Identities=13% Similarity=0.007 Sum_probs=147.0
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHc
Q 047067 206 ASTGSLEQGKWVHAHVI--------KSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQH 274 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 274 (566)
...|++++|.+.+++++ +.. +.+...+..+...|.+.|++++|++.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 332 4566778888899999999999999999874 34778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH
Q 047067 275 GLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF 353 (566)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 353 (566)
|++++|++.|++.++. .| +...+..+..++.+.|++++ ...|+...+.. +.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999985 44 56788889999999999999 99997776654 33567888899999999999999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCch
Q 047067 354 IREM-PIEPTA-AVWGALLGACRMHKN-----VELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 354 ~~~~-~~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 399 (566)
|++. .+.|+. ..|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 667864 677777777766555 344444555555555555443
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=1.4e-08 Score=85.72 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...+..+...+.+.|++++|...|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456777888899999999999999988 4455 67899999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 047067 409 SAGRLNDAARARKMMKESG 427 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~g 427 (566)
..|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=1.2e-06 Score=82.83 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC------
Q 047067 275 GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD--EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL------ 346 (566)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 346 (566)
+++++++++++++.+...+ |...|..-.....+.|.++ ++.+++..+.+.. +-+...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 3444444444444443211 3344444333444444444 4444443333332 1233334333333333333
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCChhHHHHHH
Q 047067 347 LDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVE-LGAYAAERIFELD---PHDSGPHILLANIYASAGRLNDAARAR 420 (566)
Q Consensus 347 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~ 420 (566)
++++++.++++ ...| |...|+.+...+...|+.. ....+.+++++++ |.++.++..++.+|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55666665554 2233 5566666666666655533 3444555555554 566666667777777777777777777
Q ss_pred HHHHh
Q 047067 421 KMMKE 425 (566)
Q Consensus 421 ~~m~~ 425 (566)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=4e-08 Score=103.08 Aligned_cols=159 Identities=11% Similarity=0.037 Sum_probs=125.0
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 047067 243 SGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGY 318 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 318 (566)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998853 35788999999999999999999999999985 44 577889999999999999999999
Q ss_pred HHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 047067 319 FALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH---KNVELGAYAAERIFELD 393 (566)
Q Consensus 319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 393 (566)
++...+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++... |+.++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 97766654 345778899999999999999999999987 3345 567889999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 047067 394 PHDSGPHILLA 404 (566)
Q Consensus 394 p~~~~~~~~l~ 404 (566)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=1.3e-07 Score=90.66 Aligned_cols=218 Identities=10% Similarity=-0.002 Sum_probs=151.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 047067 173 KSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKV 252 (566)
Q Consensus 173 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (566)
.|++++|.+++++..+.. +.. + +...++++.|...+.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888999998876531 111 0 11146777777766554 4567778888888888
Q ss_pred HHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHccCCHHHHHHH
Q 047067 253 FNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---APN--QVTFLCVLTACSHAGLLDEGQGY 318 (566)
Q Consensus 253 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 318 (566)
|.+... .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876632 11 35788888999999999999999998765311 121 4577788888888 999999999
Q ss_pred HHhHHhhCCC---c--cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 047067 319 FALMKKHGVE---P--EEAHYVTFVDLLGRAGLLDRALKFIREM-PI---EPT----AAVWGALLGACRMHKNVELGAYA 385 (566)
Q Consensus 319 ~~~~~~~~~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 385 (566)
|+........ + ...++..+...|.+.|++++|...|++. .+ .++ ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9555432111 1 1457888899999999999999999877 11 122 23666777778888999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHhcCChhHHHH
Q 047067 386 AERIFELDPHDSGP-----HILLANIYASAGRLNDAAR 418 (566)
Q Consensus 386 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 418 (566)
+++.+ +.|....+ ...++.+| ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 98876533 33455555 4566655554
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=3.3e-07 Score=82.26 Aligned_cols=126 Identities=8% Similarity=0.006 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG 345 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 345 (566)
+...|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+...+.. +.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 444555555555555555555553 22 34455555555555555555555554444332 223444555555554433
Q ss_pred C--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 346 L--LDRALKFIREMPIEPTA--AVWGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 346 ~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
. .+.+...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 2 333444454442 2332 233444455566677777888888887777764
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.5e-07 Score=84.47 Aligned_cols=122 Identities=8% Similarity=-0.038 Sum_probs=63.9
Q ss_pred HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-
Q 047067 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN- 378 (566)
Q Consensus 302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~- 378 (566)
+..++...|++++|...|+...+.. +.+...+..+..+|...|++++|...|++. .+.| +...|..+...+...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 5556666666666666665444433 224555666666666666666666666665 3334 34555555555543332
Q ss_pred -HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 379 -VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 379 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+.+...++++....|.. ..+..++.++...|++++|...+++..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 233444444443322221 1334455555666666666666666655
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=9.5e-08 Score=100.20 Aligned_cols=147 Identities=11% Similarity=-0.030 Sum_probs=105.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHH
Q 047067 208 TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWF 284 (566)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 284 (566)
.|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888999998887765 45677888899999999999999999988743 35678888999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 047067 285 EKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA---GLLDRALKFIREM 357 (566)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 357 (566)
++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988853 2246788888899999999999999997666654 33567788888888888 9999999998877
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.78 E-value=7.5e-09 Score=87.66 Aligned_cols=122 Identities=12% Similarity=0.057 Sum_probs=99.8
Q ss_pred HHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047067 302 VLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN 378 (566)
Q Consensus 302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 378 (566)
|...+...|++++|+..+..... ..|+ ...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 34455667889999998865443 2333 345567889999999999999999988 5556 67899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 047067 379 VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA-RKMMKE 425 (566)
Q Consensus 379 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 425 (566)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 577765
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=3.3e-08 Score=83.39 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556677888899999999999999887 3345 6788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 047067 408 ASAGRLNDAARARKMMKES 426 (566)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~ 426 (566)
...|++++|...+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=1.1e-05 Score=76.37 Aligned_cols=227 Identities=10% Similarity=0.035 Sum_probs=165.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH----Hhc--
Q 047067 173 KSEGEKALRTFSEMLREGFEPTHF-SYSSVFTALASTG--SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY----AKS-- 243 (566)
Q Consensus 173 ~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 243 (566)
....++|++++++++.. .|+.. .++.--.++...+ .++++...+..++... +.+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 34446788888877764 45443 3455555566666 7888888888887765 44455555544444 444
Q ss_pred -CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------
Q 047067 244 -GSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGK--ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL------ 311 (566)
Q Consensus 244 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 311 (566)
+++++++++++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78889999888884 457788888888888888888 999999999986543 66677766666666666
Q ss_pred HHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047067 312 LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR-ALKFIREM-PI----EPTAAVWGALLGACRMHKNVELGAYA 385 (566)
Q Consensus 312 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 385 (566)
++++.+.+..+.... +-|...|+.+...+.+.|+..+ +.++.++. .. ..+...+..+...+...|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 888888886666554 4577888888888888888544 55677765 22 23678899999999999999999999
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 047067 386 AERIFE-LDPHDSGPHILLA 404 (566)
Q Consensus 386 ~~~~~~-~~p~~~~~~~~l~ 404 (566)
++++.+ .+|.....+...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 999996 8998876666544
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=8.3e-07 Score=79.83 Aligned_cols=160 Identities=8% Similarity=-0.023 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCCcHhHHH
Q 047067 159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG----SLEQGKWVHAHVIKSGGQLVAFVGN 234 (566)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (566)
++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|...+++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55566666666666666666666666666654 34455555555555 4 6666777776666554 444555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047067 235 TLVDMYAK----SGSIEDAEKVFNRLLKRD-----VVSWNSMLTGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLC 301 (566)
Q Consensus 235 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 301 (566)
.|..+|.. .+++++|.+.|++..+.+ +.++..|...|.. .++.++|+.+|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666665 667777777777765433 4677777777777 66777777777777764 224445555
Q ss_pred HHHHHHcc-C-----CHHHHHHHHHhHHhhCC
Q 047067 302 VLTACSHA-G-----LLDEGQGYFALMKKHGV 327 (566)
Q Consensus 302 ll~a~~~~-g-----~~~~a~~~~~~~~~~~~ 327 (566)
|...|... | ++++|...|+...+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66655432 2 67777777766666653
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=6.5e-08 Score=79.02 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=72.8
Q ss_pred CCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067 327 VEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILL 403 (566)
Q Consensus 327 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 403 (566)
+.|+ ...+......|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 345566677777777777777777766 3344 566777777777888888888888888888888887788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 047067 404 ANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 404 ~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
+.+|...|++++|.+.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877765
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=8.6e-07 Score=84.22 Aligned_cols=159 Identities=8% Similarity=-0.053 Sum_probs=110.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHhHHhhCCC-cc----HHHHHH
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLRNG-IAPNQV----TFLCVLTACSHAGLLDEGQGYFALMKKHGVE-PE----EAHYVT 336 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 336 (566)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+......... ++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677777777777777776632 122211 2334555666677788888877555542221 22 335777
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 047067 337 FVDLLGRAGLLDRALKFIREM-------PIE-PT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHI 401 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~-------~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 401 (566)
+...|...|++++|...++++ +.. |. ..++..+...|...|++++|+..+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888877765 111 22 2478888899999999999999999999765332 45788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 047067 402 LLANIYASAGR-LNDAARARKMMKE 425 (566)
Q Consensus 402 ~l~~~~~~~g~-~~~a~~~~~~m~~ 425 (566)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988864
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1.6e-07 Score=76.61 Aligned_cols=109 Identities=11% Similarity=-0.011 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047067 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACR 374 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 374 (566)
..+......+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345556666666777777777775555443 335666777777777888888888877776 3344 5678999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
..|++++|+..++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999998887777654
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=2.9e-07 Score=80.07 Aligned_cols=156 Identities=13% Similarity=-0.002 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 047067 131 VGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA-LA 206 (566)
Q Consensus 131 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~ 206 (566)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 455667788899999999999999875 36788999999999999999999999988664 3444332222111 11
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCCHHHHH
Q 047067 207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~ 281 (566)
..+....+...++.+++.. +.+...+..+...|...|++++|...|+++.+. +...|..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566677776654 345666667777777777777777777776432 1346777777777777777777
Q ss_pred HHHHHHHH
Q 047067 282 RWFEKMLR 289 (566)
Q Consensus 282 ~~~~~m~~ 289 (566)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=3.6e-07 Score=82.04 Aligned_cols=125 Identities=8% Similarity=-0.050 Sum_probs=100.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047067 299 FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH 376 (566)
Q Consensus 299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 376 (566)
+..+...+...|++++|...|... +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 444555666777777777777544 2556677777888888888888888888776 2234 567888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 377 KNVELGAYAAERIFELDPHDS----------------GPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
|++++|+..++++++..|.+. .++..++.+|...|++++|...+++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999888877 889999999999999999999999998754
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=3.6e-07 Score=86.52 Aligned_cols=154 Identities=6% Similarity=-0.095 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcc
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL-CVLTACSHA 309 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~ 309 (566)
..+...+.+.|++++|...|++.. ..+...+..+...+.+.|++++|+..+++.... .|+..... .....+...
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence 334444444444444444444431 123344444444444444555554444444332 23322111 111123333
Q ss_pred CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 047067 310 GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT---AAVWGALLGACRMHKNVELGAYA 385 (566)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~ 385 (566)
+..++|...++...... +.+...+..+...|...|++++|...++++ ...|+ ...+..++..+...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 44444444443333322 223444455555555555555555555554 22222 34555555556666666666555
Q ss_pred HHHHH
Q 047067 386 AERIF 390 (566)
Q Consensus 386 ~~~~~ 390 (566)
+++.+
T Consensus 278 ~r~al 282 (287)
T 3qou_A 278 YRRQL 282 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=1.3e-06 Score=89.16 Aligned_cols=359 Identities=9% Similarity=-0.066 Sum_probs=209.8
Q ss_pred hcC-ChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHH
Q 047067 39 KCG-CLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVH 117 (566)
Q Consensus 39 ~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~ 117 (566)
+.| +++.|+.+|+.+. ..|-. |+++.+..+|++.+.. .|+...|..-++-..+.++..+..+.++
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 3677777776643 22211 7899999999999874 5898888888777665554322677788
Q ss_pred HHHHHh-CCC-CchhHHHHHHHHHH----hcCCHHHHHHHHHhCCC-C--Ch-HHHHHHHHHHHh-------------CC
Q 047067 118 AFCLKY-GYD-WNVYVGSSLLDMYA----RFDQMDDAWFLFTALES-K--NE-VSWNALIAGHAR-------------KS 174 (566)
Q Consensus 118 ~~~~~~-g~~-~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~-~--~~-~~~~~li~~~~~-------------~g 174 (566)
+.++.. |.. .+..+|...+..+. ..++++.++++|++... | +. ..|......-.. .+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 887775 543 36677887777654 34678899999998744 2 21 223322221100 11
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CC-----hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 047067 175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALAST--GS-----LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247 (566)
Q Consensus 175 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 247 (566)
.+..|..+++++...--..+...|...+.--... +- .+.+..+|++++... +.+..+|-..+..+.+.|+++
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2233444444433210001223444444332221 11 234667888888764 556778888888888899999
Q ss_pred HHHHHHHhcCC-C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHccCCHH
Q 047067 248 DAEKVFNRLLK-R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG---------IAP---NQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 248 ~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~ll~a~~~~g~~~ 313 (566)
.|..+|++... | +...|. .|+...+.++. ++.+.+.- ..+ ....|...+....+.+.++
T Consensus 231 ~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 231 KAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 99999987632 3 222232 23222111122 22222210 011 1244666666666678899
Q ss_pred HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067 314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIF 390 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 390 (566)
.|..+|... ... ..+...|...+.+-.+.+ +.+.|..+|+.. ...-+...|...+.-....|+.+.|..+++++.
T Consensus 304 ~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 304 LFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999665 211 234445544333333334 699999999876 221234567777777788899999999999872
Q ss_pred hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 391 ELDPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 391 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.....+...+..-...|+.+.+..+++++.+
T Consensus 382 ----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445666677766778999999888877764
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=1.9e-07 Score=78.08 Aligned_cols=96 Identities=14% Similarity=-0.016 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666778888999999999999887 3345 67889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 047067 409 SAGRLNDAARARKMMKES 426 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~ 426 (566)
..|++++|...+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=8.1e-07 Score=84.41 Aligned_cols=163 Identities=7% Similarity=-0.070 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC---Ccc--HH
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-----QVTFLCVLTACSHAGLLDEGQGYFALMKKHGV---EPE--EA 332 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~p~--~~ 332 (566)
.+...+..+...|++++|++.+.+..+.....+ ...+..+...+...|++++|...+........ .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777778888777777766422111 11233445556677788888888755443211 111 44
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CC
Q 047067 333 HYVTFVDLLGRAGLLDRALKFIREM----PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELDPH------DS 397 (566)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 397 (566)
.|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888765 11222 257888889999999999999999999876432 14
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 047067 398 GPHILLANIYASAGRLNDA-ARARKMMKE 425 (566)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 425 (566)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 777877654
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=1.3e-06 Score=78.33 Aligned_cols=145 Identities=6% Similarity=-0.133 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047067 233 GNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLL 312 (566)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 312 (566)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34566677788888888888888877777888888888888888888888888877742 23456666777777777777
Q ss_pred HHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 313 DEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPT-AAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 313 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
++|...|+...+......... +...| +...|+ ...|..+..++...|++++|...++++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~-------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID-------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE-------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHH-------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777755444321110000 00000 012333 36778888888889999999999999999
Q ss_pred cCCCC
Q 047067 392 LDPHD 396 (566)
Q Consensus 392 ~~p~~ 396 (566)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98876
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=5.3e-06 Score=78.69 Aligned_cols=157 Identities=11% Similarity=-0.043 Sum_probs=116.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLLKR---DV------VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PN----QVTFLC 301 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 301 (566)
.+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999887432 11 13334666677778999999999999874322 22 236888
Q ss_pred HHHHHHccCCHHHHHHHHHhHHh----h-CCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047067 302 VLTACSHAGLLDEGQGYFALMKK----H-GVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPT-AAVWG 367 (566)
Q Consensus 302 ll~a~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 367 (566)
+..+|...|++++|..+|..+.+ . +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 89999999999999999955552 1 22222 347788999999999999999998876 22233 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 047067 368 ALLGACRMHKN-VELGAYAAERIFEL 392 (566)
Q Consensus 368 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 392 (566)
.+..++...|+ .++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999998864
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=1.6e-07 Score=90.04 Aligned_cols=195 Identities=8% Similarity=-0.026 Sum_probs=148.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 047067 207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK-SGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFE 285 (566)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (566)
..|++++|..++++..+.... . +.+ .++++.|...|.+ ....|...|++++|+..|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 356778899988888765321 1 122 5788999888775 3667889999999999999
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC--C-Cc--cHHHHHHHHHHhhhcCCHHHHHHHHH
Q 047067 286 KMLRNGI---AP--NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG--V-EP--EEAHYVTFVDLLGRAGLLDRALKFIR 355 (566)
Q Consensus 286 ~m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (566)
+..+... .+ -..+|..+...|...|++++|...|......- . .| ...++..+...|.+ |++++|...|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8876321 11 14578888999999999999999995544321 1 12 24578888899988 99999999998
Q ss_pred hC-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCChhHHHHHHH
Q 047067 356 EM-PIEP---T----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS------GPHILLANIYASAGRLNDAARARK 421 (566)
Q Consensus 356 ~~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 421 (566)
+. .+.| + ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 1111 1 35788889999999999999999999999866543 256677888889999999999999
Q ss_pred HHH
Q 047067 422 MMK 424 (566)
Q Consensus 422 ~m~ 424 (566)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1.4e-07 Score=89.13 Aligned_cols=189 Identities=12% Similarity=-0.016 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 047067 231 FVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTAC 306 (566)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~ 306 (566)
..+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++.++. .| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344445555555666666666655542 224555666666666666666666666666553 23 345555566666
Q ss_pred HccCCHHHHHHHHHhHHhhCCCccH-HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEPEE-AHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYA 385 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 385 (566)
...|++++|...|....+.. |+. ..+...+....+......... .......++......+ ..+ ..|+.++|++.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 66666666666664433321 110 000011111111111111111 1122222333333333 222 26888999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 047067 386 AERIFELDPHDSGPHILLANIYASA-GRLNDAARARKMMKES 426 (566)
Q Consensus 386 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 426 (566)
++++++++|++......+...+.+. +++++|.++|.++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999998877777777777766 7789999999988653
No 127
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=2.1e-06 Score=77.99 Aligned_cols=60 Identities=12% Similarity=-0.040 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC----hHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047067 130 YVGSSLLDMYARFDQMDDAWFLFTALES--KN----EVSWNALIAGHARKSEGEKALRTFSEMLRE 189 (566)
Q Consensus 130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 189 (566)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445556667777777777777776553 21 245666677777777777777777777654
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=3.8e-07 Score=88.53 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=106.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+.+..+- +.....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 3456777777777777777777777777663 2221000 001111110 011457778888
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH-
Q 047067 340 LLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA- 416 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 416 (566)
+|.+.|++++|...+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999887 3445 6778999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 047067 417 ARARKMMK 424 (566)
Q Consensus 417 ~~~~~~m~ 424 (566)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666664
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=9.8e-07 Score=75.41 Aligned_cols=127 Identities=8% Similarity=0.015 Sum_probs=90.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM 375 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 375 (566)
.+..+...+...|++++|...|....... +.+...+..+...+...|++++|.+.+++. ...| +...|..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444455555566666666664443332 224556666677777777777777777665 2233 56788888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 047067 376 HKNVELGAYAAERIFELDPHDSGPHILLANI--YASAGRLNDAARARKMMKE 425 (566)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 425 (566)
.|++++|...+++++++.|.+...+..+..+ +...|++++|...+....+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988777554444 7888999999999887754
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=1.2e-06 Score=70.50 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 047067 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE-PTAAVWGALLGACR 374 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~ 374 (566)
..+..+...+...|++++|...+..+.... +.+...+..+...+.+.|++++|...++++ ... .+..+|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444455555555555555554333322 223445556666666677777777766665 222 35667788888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG 411 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 411 (566)
..|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8889999999999998888888888888877776543
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.3e-07 Score=73.92 Aligned_cols=96 Identities=14% Similarity=-0.016 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 455667778888899999999998877 3344 57889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 047067 409 SAGRLNDAARARKMMKES 426 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~ 426 (566)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=1.2e-06 Score=71.18 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC 373 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 373 (566)
...+..+...+...|++++|...+....... +.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3444555555556666666666664444332 224555666667777777777777777665 2233 466788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL 413 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 413 (566)
...|++++|...++++++..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999888888888888888775
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=1.3e-06 Score=71.32 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047067 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACR 374 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 374 (566)
..+..+...+...|++++|...+....+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444444444444444444443333221 123445555556666666666666666555 2223 4567777778888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR 412 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 412 (566)
..|++++|...++++++.+|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888788888887776653
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=1e-06 Score=76.57 Aligned_cols=119 Identities=9% Similarity=0.039 Sum_probs=81.3
Q ss_pred ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--HHH
Q 047067 308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA-CRMHKNV--ELG 382 (566)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a 382 (566)
..|++++|...+....... +.+...+..+...|...|++++|...|++. ...| +...|..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455566666664444332 234556666777777777777777777665 2223 55667777777 6677887 888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 383 AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
...++++++.+|+++.++..++.+|...|++++|...++++.+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888887643
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=8.1e-07 Score=82.19 Aligned_cols=127 Identities=14% Similarity=-0.004 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc--HHHHHHHHHHhhh
Q 047067 266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE--EAHYVTFVDLLGR 343 (566)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 343 (566)
.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|....... .|. ...+..+..++.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3445556666666666666666553 2443344444445666667777776664333211 111 2245556666777
Q ss_pred cCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 344 AGLLDRALKFIREM---PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 344 ~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
.|++++|+..|++. +..|. ...+.....++...|+.++|...++++...+|+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 77777777777666 21143 235555666667777777777777777777776
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=9.9e-07 Score=78.31 Aligned_cols=78 Identities=13% Similarity=-0.030 Sum_probs=38.5
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHH
Q 047067 242 KSGSIEDAEK---VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GIAP-NQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 242 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 313 (566)
..|++++|.+ .+..-+.....+++.+...+...|++++|+..+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443322234455666666666666666666666665541 1111 1234444444555555555
Q ss_pred HHHHHH
Q 047067 314 EGQGYF 319 (566)
Q Consensus 314 ~a~~~~ 319 (566)
+|...+
T Consensus 84 ~A~~~~ 89 (203)
T 3gw4_A 84 AARRCF 89 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=4e-06 Score=79.56 Aligned_cols=161 Identities=11% Similarity=-0.047 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 047067 232 VGNTLVDMYAKSGSIEDAEKVFNRLLK---RDV------VSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---APN--QV 297 (566)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 297 (566)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677788888888888765421 111 2234455666777888899888888875321 111 44
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHh---h-CCCc--cHHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-H
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKK---H-GVEP--EEAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPT-A 363 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~---~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 363 (566)
+++.+...|...|++++|..++....+ . +-.+ ...++..+...|.+.|++++|.+.+++. +..+. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888888888999998888855441 1 1111 1257788888899999999999888776 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 047067 364 AVWGALLGACRMHKNVELG-AYAAERIFEL 392 (566)
Q Consensus 364 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 392 (566)
.+|..+..++...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7778887753
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=5e-07 Score=73.06 Aligned_cols=94 Identities=19% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067 333 HYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA 410 (566)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 410 (566)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999988 4455 6788999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 047067 411 GRLNDAARARKMMKES 426 (566)
Q Consensus 411 g~~~~a~~~~~~m~~~ 426 (566)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=8.8e-07 Score=75.93 Aligned_cols=97 Identities=16% Similarity=0.047 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
+...+..+...+.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445666667777777777777777766 3334 5567777777777777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 047067 408 ASAGRLNDAARARKMMKES 426 (566)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~ 426 (566)
...|++++|...+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7778888877777777653
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=5.5e-06 Score=76.62 Aligned_cols=182 Identities=10% Similarity=-0.021 Sum_probs=135.9
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------
Q 047067 242 KSGSIEDAEKVFNRLL---KRDVVSWNSM-------LTGCAQHGLGKATVRWFEKMLRNGIAPN---------------- 295 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------- 295 (566)
..++.+.|.+.|.++. ......|+.+ ...+...++..+++..++.-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5788888888888874 3356788877 4566666666666666665554 2222
Q ss_pred ------HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----HH
Q 047067 296 ------QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTA----AV 365 (566)
Q Consensus 296 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~~ 365 (566)
......+...+...|++++|.+.|..+...+ |+......+...+.+.+++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223345567788999999999996655433 54435666777899999999999999987433433 36
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 366 WGALLGACRMHKNVELGAYAAERIFELD--PH-DSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7888899999999999999999998543 54 44577889999999999999999999998743
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=1.7e-07 Score=83.34 Aligned_cols=173 Identities=7% Similarity=-0.057 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047067 235 TLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL 311 (566)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 311 (566)
..+......|++++|.+.|+.-... ....|..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 3444455566777777766543222 3456777778888888888888888888773 2221100000 0
Q ss_pred HHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047067 312 LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERI 389 (566)
Q Consensus 312 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 389 (566)
...-. . ......+..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++
T Consensus 79 ~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 79 LLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000 0 001356677788888889999998888877 3344 5678888999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhCC
Q 047067 390 FELDPHDSGPHILLANIYASAGRLNDAA-RARKMMKESG 427 (566)
Q Consensus 390 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 427 (566)
++++|+++.++..+..++...++.+++. ..+..|...|
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999888887776 5566655433
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1.1e-06 Score=69.16 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPH--DSGPHILLANI 406 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 406 (566)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777888888888888888876 2233 5678888888899999999999999999999999 88899999999
Q ss_pred HHhc-CChhHHHHHHHHHHhCCC
Q 047067 407 YASA-GRLNDAARARKMMKESGV 428 (566)
Q Consensus 407 ~~~~-g~~~~a~~~~~~m~~~g~ 428 (566)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999887543
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=7.8e-07 Score=72.63 Aligned_cols=94 Identities=9% Similarity=0.015 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG-------PHIL 402 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 402 (566)
..+..+...+.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35666788888888888888888876 4455 5678888999999999999999999999998877653 5677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 047067 403 LANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 403 l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888999999999999988765
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=2.2e-06 Score=76.03 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=62.3
Q ss_pred hcCCHHHHHH---HHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChH
Q 047067 141 RFDQMDDAWF---LFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEP-THFSYSSVFTALASTGSLE 212 (566)
Q Consensus 141 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~ 212 (566)
..|++++|.+ .+..-+.....+++.+...+...|++++|+..|++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 555434345567777777778888888888777776541 1111 2234445555566666666
Q ss_pred HHHHHHHHHHHh----CCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067 213 QGKWVHAHVIKS----GGQ--LVAFVGNTLVDMYAKSGSIEDAEKVFNR 255 (566)
Q Consensus 213 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (566)
+|...+.+.++. +-. .....+..+...|...|++++|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666555443 101 1123344445555555555555555444
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=6.7e-07 Score=75.25 Aligned_cols=104 Identities=7% Similarity=-0.066 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC 373 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 373 (566)
...+..+...+...|++++|...|....... +.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556666677777777777775555443 335666777777788888888888888776 3344 457788888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
...|++++|+..+++++++.|+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999887553
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=2.5e-06 Score=70.33 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 329 PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667778888888889999998888876 3344 567888899999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 047067 407 YASAGRLNDAARARKMMKES 426 (566)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~ 426 (566)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=2.4e-06 Score=69.69 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=89.9
Q ss_pred CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 328 EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987 5455 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 047067 406 IYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 406 ~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=4.2e-05 Score=73.14 Aligned_cols=232 Identities=16% Similarity=0.127 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF-SYSSVFTALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 239 (566)
.++.+-....+.+..++|+++++++... .|+.. .++.--.++...+ .++++...++.++... +.+..+|+.-...
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444445555566788888777764 34433 3444444444555 3666666666666654 4455555555555
Q ss_pred HHhc-C-CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067 240 YAKS-G-SIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGK--------ATVRWFEKMLRNGIAPNQVTFLCVLTAC 306 (566)
Q Consensus 240 ~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 306 (566)
+.+. + ++++++++++++.+. |..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 5554 4 566666666666433 3445555444444444333 555555555553222 344444444444
Q ss_pred HccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-----
Q 047067 307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNV----- 379 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~----- 379 (566)
.+.+... . ....++++++.++++ ...| |...|+-+-..+...|+.
T Consensus 212 ~~l~~~~---------------~-------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 212 VSRPGAE---------------T-------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp TTSTTCC---------------C-------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred Hhccccc---------------c-------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccc
Confidence 3333200 0 000034455555444 2233 445555544444444332
Q ss_pred ---------------HHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 380 ---------------ELGAYAAERIFEL------DPHDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 380 ---------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.........+... ++..+.+...|+++|...|+.++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1111222222221 245566777899999999999999999999864
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.39 E-value=0.00025 Score=67.76 Aligned_cols=250 Identities=13% Similarity=0.027 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047067 132 GSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKS-EGEKALRTFSEMLREGFEPTHFSYSSVFTALAS 207 (566)
Q Consensus 132 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 207 (566)
++.+-....+.+..++|+++++.+.. .+..+|+.--..+...| .+++++++++.+.... +-+...|+.-...+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33444444555566789999998875 36678988888888888 5999999999999864 2355566665555555
Q ss_pred c-C-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH--------HHHHHHHhcC---CCChhHHHHHHHHHHHc
Q 047067 208 T-G-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE--------DAEKVFNRLL---KRDVVSWNSMLTGCAQH 274 (566)
Q Consensus 208 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~---~~~~~~~~~li~~~~~~ 274 (566)
. + +++++..++..+++.. +.+...|+--..++.+.|.++ ++++.++++. ..|..+|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 5 6 7899999999998765 556777776666666666665 8888888774 45778999998888888
Q ss_pred CC-------HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH--HHHHHHhHHhhCCCccHHHHHHHHHHhhhc
Q 047067 275 GL-------GKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDE--GQGYFALMKKHGVEPEEAHYVTFVDLLGRA 344 (566)
Q Consensus 275 g~-------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~--a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 344 (566)
++ ++++++.+++++.. .| |...|+.+-..+.+.|.... -..+ .|... .-++.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~---------~~~~~---~~~~~---- 276 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAI---------LPYTA---SKLNP---- 276 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHH---------GGGTC------------
T ss_pred cccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccc---------ccccc---ccccc----
Confidence 76 67888888888874 33 45556555444444433200 0000 00000 00000
Q ss_pred CCHHHHHHHHHhC-C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHH
Q 047067 345 GLLDRALKFIREM-P-------IEPTAAVWGALLGACRMHKNVELGAYAAERIF-ELDPHDSGPHIL 402 (566)
Q Consensus 345 g~~~~A~~~~~~~-~-------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~ 402 (566)
...+..++..++ + -.++...+..|...|...|+.++|.++++.+. +.+|-....+..
T Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 277 -DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred -cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 001111122222 1 12466677777777887888888888888876 567765544443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=2.6e-06 Score=73.88 Aligned_cols=127 Identities=9% Similarity=0.057 Sum_probs=92.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH-hhhcCCH--H
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL-LGRAGLL--D 348 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 348 (566)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|....... +.+...+..+... |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777888888777642 2356677777788888888888888885555443 2355667777777 7788888 9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 349 RALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 349 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
+|...++++ ...| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999888877 3345 567888888999999999999999999999999886543
No 151
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=1.6e-06 Score=72.99 Aligned_cols=99 Identities=6% Similarity=-0.053 Sum_probs=61.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM 375 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 375 (566)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++. .+.| ++..|..+..++..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 34444445555555555555554444332 224555666666666666677776666665 3344 34677777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC
Q 047067 376 HKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
.|++++|+..+++++++.|+++
T Consensus 117 lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888877653
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=3.3e-06 Score=67.82 Aligned_cols=96 Identities=19% Similarity=0.298 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 2234 67889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 047067 409 SAGRLNDAARARKMMKES 426 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~ 426 (566)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999999764
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=3.8e-06 Score=66.75 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666667777777777777665 2233 55666777777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 047067 409 SAGRLNDAARARKMMKES 426 (566)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~ 426 (566)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 777777777777777653
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=4.2e-06 Score=69.79 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556666777777777777777777766 45565 456777777777778888888888888877777777777788
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047067 405 NIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+|...|++++|...+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888887777765
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=0.00016 Score=68.80 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC-HHHHHHHH
Q 047067 211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG--SIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGL-GKATVRWF 284 (566)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 284 (566)
++++..++..++... +-+..+|+.-...+.+.| .+++++.+++.+. .+|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455566666666554 445566666555566666 3667777776663 3456667666666666666 46777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc------
Q 047067 285 EKMLRNGIAPNQVTFLCVLTACSHA--------------GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA------ 344 (566)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 344 (566)
.++++..+. |...|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 777765322 444554444443332 23455555553333322 23444454443333333
Q ss_pred -----CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067 345 -----GLLDRALKFIREM-PIEPTAAVWGALLGA-----CRMHKNVELGAYAAERIFELDPHDSGPHILL 403 (566)
Q Consensus 345 -----g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 403 (566)
+.++++++.++++ .+.||. .|..+..+ ....|..++....+.++.+++|...+-|.-+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 3345555555555 334443 23221111 1123445555556666666666554444433
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=3e-06 Score=70.62 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=72.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM 375 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 375 (566)
.+..+...+.+.|++++|...|....... +.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34445555666666666666665444433 234556666777777777777777777766 3334 45677788888889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067 376 HKNVELGAYAAERIFELDPHDSGPHILL 403 (566)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l 403 (566)
.|++++|...+++++++.|+++......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999988887655443
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=0.00011 Score=69.93 Aligned_cols=178 Identities=9% Similarity=0.047 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcC---CCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 047067 246 IEDAEKVFNRLL---KRDVVSWNSMLTGCAQHG--LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL-LDEGQGYF 319 (566)
Q Consensus 246 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 319 (566)
+++++.+++.+. .++..+|+.-.-.+...| .++++++.+.++.+...+ |...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777763 457889998888888888 489999999999996433 67777777777777887 68999999
Q ss_pred HhHHhhCCCccHHHHHHHHHHhhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 047067 320 ALMKKHGVEPEEAHYVTFVDLLGRA--------------GLLDRALKFIREM-PIEP-TAAVWGALLGACRMH------- 376 (566)
Q Consensus 320 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 376 (566)
..+.+.. +-|...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 7767665 44667777666666554 4578899988877 3345 778888666555544
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCChhHHHHHHHHHHh
Q 047067 377 ----KNVELGAYAAERIFELDPHDSGPHILLANIY---ASAGRLNDAARARKMMKE 425 (566)
Q Consensus 377 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 425 (566)
+.++++++.++++++++|++...+..++... ...|..++....+.++++
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999865554443322 245777788888888876
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=1.7e-05 Score=67.46 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240 (566)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 240 (566)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+...++.. +.+...+..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555555666666666666666655432 2234444444455555555555555555554443 22333444444444
Q ss_pred HhcCCHHHHHHHHHhc
Q 047067 241 AKSGSIEDAEKVFNRL 256 (566)
Q Consensus 241 ~~~g~~~~A~~~~~~~ 256 (566)
...|++++|...|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALRDYETV 107 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4444444444444443
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1e-05 Score=64.12 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=68.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM 375 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 375 (566)
.+..+...+...|++++|...+....... +.+...+..+...+.+.|++++|...+++. ...| +...|..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444444555555555555554333322 223445555666666666677766666655 2233 45677778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067 376 HKNVELGAYAAERIFELDPHDSGPHILLANI 406 (566)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 406 (566)
.|++++|...++++++.+|+++..+..+..+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 8888888888888888888887666665554
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=4.7e-06 Score=67.59 Aligned_cols=109 Identities=9% Similarity=-0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM 375 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 375 (566)
.+..+...+.+.|++++|...|....+.. +.+...|..+..+|.+.|++++|...+++. .+.| +...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555555555555554433332 223455666666666667777776666665 3334 45677778888888
Q ss_pred cCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 047067 376 HKNVELGAYAAERIFELD------PHDSGPHILLANIY 407 (566)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 407 (566)
.|++++|...++++++++ |.+......+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888887 77665555555443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=5.8e-06 Score=70.70 Aligned_cols=108 Identities=9% Similarity=-0.008 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC 373 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 373 (566)
...+..+...+...|++++|...|....+.. +.+...|..+...|.+.|++++|...|++. .+.| +...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555556666666666666664444432 224566777777777888888888887776 3345 567889999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 374 RMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
...|++++|+..++++++++|+++..+....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999988665443
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.30 E-value=2.7e-06 Score=71.08 Aligned_cols=91 Identities=19% Similarity=0.081 Sum_probs=72.2
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------C
Q 047067 335 VTFVDLLGRAGLLDRALKFIREM-PIEPT-------------AAVWGALLGACRMHKNVELGAYAAERIFEL-------D 393 (566)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~ 393 (566)
......+.+.|++++|...|++. .+.|+ ...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444555566666666666555 22222 338999999999999999999999999999 9
Q ss_pred CCCCchH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 394 PHDSGPH----ILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 394 p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
|++...| ...+.++...|++++|...|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999999976
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=5.5e-06 Score=67.16 Aligned_cols=97 Identities=18% Similarity=0.081 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 3344 6788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 047067 408 ASAGRLNDAARARKMMKES 426 (566)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~ 426 (566)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998874
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=3.7e-06 Score=79.27 Aligned_cols=186 Identities=6% Similarity=-0.058 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (566)
.+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555444421 1133444444445555555555555555544433 233444555555555
Q ss_pred hcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047067 242 KSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGY 318 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 318 (566)
..|++++|...|++..+. +...+...+....+ ..++. .+.........++......+ ..+ ..|+.++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 666666666555554211 00001111111111 01111 11122222233333332222 222 25777777777
Q ss_pred HHhHHhhCCCcc-HHHHHHHHHHhhhc-CCHHHHHHHHHhC
Q 047067 319 FALMKKHGVEPE-EAHYVTFVDLLGRA-GLLDRALKFIREM 357 (566)
Q Consensus 319 ~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~~ 357 (566)
++...+. .|+ ......+...+.+. +.+++|.++|+++
T Consensus 158 ~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 158 CQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7554433 333 33334444445554 6678888888766
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.25 E-value=6.7e-06 Score=70.13 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3678888888999999999999999999999999999999999999999999999999988764
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=1e-05 Score=66.57 Aligned_cols=100 Identities=8% Similarity=-0.066 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 047067 295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA 372 (566)
Q Consensus 295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 372 (566)
+...+..+...+...|++++|...|....... +.+...+..+...|...|++++|...+++. ...| +...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34555555555566666666666664444332 223455666666677777777777776665 2234 45677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 047067 373 CRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
+...|++++|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888887776
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=6e-06 Score=67.11 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=69.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 047067 336 TFVDLLGRAGLLDRALKFIREM-PIEPT-A---AVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHILLANIY 407 (566)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 407 (566)
.+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3556677778888888887776 22232 2 466777778888888888888888888888888 66688888888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 047067 408 ASAGRLNDAARARKMMKES 426 (566)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~ 426 (566)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888764
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1.2e-05 Score=81.55 Aligned_cols=144 Identities=11% Similarity=0.018 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL 340 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 340 (566)
...|..+...|.+.|++++|+..|++.++. .|+...+ .-+...+.- ......|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKASE--------SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 446666777777777777777777777662 2221000 000000000 0124577788889
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067 341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR 418 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 418 (566)
|.+.|++++|...+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|+++++.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3344 577899999999999999999999999999999999999999999999999988764
Q ss_pred -HHHHHHh
Q 047067 419 -ARKMMKE 425 (566)
Q Consensus 419 -~~~~m~~ 425 (566)
.++.|..
T Consensus 407 ~~~~~~f~ 414 (457)
T 1kt0_A 407 RIYANMFK 414 (457)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 4555543
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.19 E-value=1.4e-05 Score=81.28 Aligned_cols=83 Identities=7% Similarity=0.031 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 047067 239 MYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDE 314 (566)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 314 (566)
.|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555542 223455555555555555555555555555553 22 24445555555555555555
Q ss_pred HHHHHHhHH
Q 047067 315 GQGYFALMK 323 (566)
Q Consensus 315 a~~~~~~~~ 323 (566)
|.+.|+...
T Consensus 93 A~~~~~~al 101 (477)
T 1wao_1 93 ALRDYETVV 101 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555553333
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.1e-05 Score=64.37 Aligned_cols=78 Identities=12% Similarity=-0.030 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...+..+...|...|++++|...+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 345555666666667777776666655 2233 56677778888888889999999999999988888766666655543
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=5.3e-06 Score=84.53 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=81.5
Q ss_pred HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067 305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG 382 (566)
Q Consensus 305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 382 (566)
.+.+.|++++|...++...+.. +.+...|..+...|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445566666666664444432 224566777777777777777777777766 3345 457888888888888999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHH--HHhcCChhHHHHHHH
Q 047067 383 AYAAERIFELDPHDSGPHILLANI--YASAGRLNDAARARK 421 (566)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 421 (566)
++.++++++++|++..++..++.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999888888888888777 778888888888877
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=3.4e-05 Score=74.69 Aligned_cols=149 Identities=11% Similarity=-0.036 Sum_probs=80.3
Q ss_pred CHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047067 144 QMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAH 220 (566)
Q Consensus 144 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 220 (566)
++++|...|+...+ .+...|..+...|.+.|++++|+..|++..... |+...+ ..+.+..+-
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-- 192 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-- 192 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--
Confidence 33444444444332 145567777888888888888888888877643 222000 000000000
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CH
Q 047067 221 VIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQ 296 (566)
Q Consensus 221 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 296 (566)
+....++..+..+|.+.|++++|+..|++.. ..+..+|..+..+|...|++++|+..|++.++. .| +.
T Consensus 193 ------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~ 264 (336)
T 1p5q_A 193 ------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNK 264 (336)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 0012344555555666666666666665542 234556666666666666666666666666653 23 34
Q ss_pred HHHHHHHHHHHccCCHHHH
Q 047067 297 VTFLCVLTACSHAGLLDEG 315 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a 315 (566)
..+..+..++...|+.+++
T Consensus 265 ~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666665
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.15 E-value=7.3e-06 Score=72.60 Aligned_cols=161 Identities=11% Similarity=-0.005 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067 134 SLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS 210 (566)
Q Consensus 134 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 210 (566)
..+......|+++.|.+.|+.-.+. ....|..+...+.+.|++++|+..|++..... |+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence 3344455556677776666644332 44567788888999999999999999988742 211100000 0
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067 211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKM 287 (566)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (566)
.+.-. . .....++..+..+|.+.|++++|+..|++.. ..+..+|..+..+|...|++++|+..|++.
T Consensus 79 ~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 79 LLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000 0 0012334445555555555555555555542 234455555666666666666666666666
Q ss_pred HHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 047067 288 LRNGIAP-NQVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 288 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 316 (566)
.+. .| +...+..+..++...++.+++.
T Consensus 149 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 149 ASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 553 23 3344444555555555554444
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=2e-06 Score=68.95 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=62.6
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHH
Q 047067 343 RAGLLDRALKFIREM-PI---EPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAA 417 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 417 (566)
..|++++|...|++. .. .|+ ...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777766 43 243 3577778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhC
Q 047067 418 RARKMMKES 426 (566)
Q Consensus 418 ~~~~~m~~~ 426 (566)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887653
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=8.3e-06 Score=66.12 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD-------SGPHI 401 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 401 (566)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677788888889999999888877 2233 66788888889999999999999999999988766 77888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 402 LLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
.++.+|...|++++|...+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999874
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=3.5e-05 Score=77.32 Aligned_cols=162 Identities=7% Similarity=-0.097 Sum_probs=99.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHccCCHHHHHHHHHhHHh----hCCCc-cHHH
Q 047067 264 WNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQ----VTFLCVLTACSHAGLLDEGQGYFALMKK----HGVEP-EEAH 333 (566)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~ 333 (566)
+..+...|...|++++|.+.+.++...- ..++. ...+.+-..+...|+++++..++..... .+..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5566777777777777777777665421 11121 1222233333456777777777643322 11122 2456
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----Cc
Q 047067 334 YVTFVDLLGRAGLLDRALKFIREM-------PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELD---PHD----SG 398 (566)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 398 (566)
+..+...|...|++++|..++++. .-+|. ..++..++..|...|+++.|...+++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677778888888888888877765 11222 3467777788888888888888888877643 222 13
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 399 PHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+..++..+...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455667777788888888877766643
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.12 E-value=2e-05 Score=61.79 Aligned_cols=97 Identities=15% Similarity=0.044 Sum_probs=56.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 047067 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP---TAAVWGALLGACRM 375 (566)
Q Consensus 300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~ 375 (566)
..+...+...|++++|...+....+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+..++..
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 333444444444444444443333322 223444555566666666666666666655 2233 35677777777777
Q ss_pred c-CCHHHHHHHHHHHHhcCCCCC
Q 047067 376 H-KNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 376 ~-g~~~~a~~~~~~~~~~~p~~~ 397 (566)
. |++++|.+.++++++..|+++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 7 888888888888887777654
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=1.5e-05 Score=64.63 Aligned_cols=114 Identities=4% Similarity=-0.079 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG 342 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (566)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+....... |
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~------------- 69 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--R------------- 69 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--H-------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--c-------------
Confidence 45555555555666666666666555532 1233444444444444455555544443322211 0
Q ss_pred hcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067 343 RAGLLDRALKFIREMPIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA 408 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 408 (566)
...++ ..+|..+..++...|++++|...++++++..| ++.....+..++.
T Consensus 70 ---------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 70 ---------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ---------------HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ---------------ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 00112 45566666777777777777777777777777 3445554444443
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=2e-05 Score=77.36 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL 340 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 340 (566)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++.. . -+.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~-------~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK-------L-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG-------G-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH-------H-HHHHHHHHHHHHHH
Confidence 345777777888888888888888877762 11110 0001111110 0 02245678888999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067 341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR 418 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 418 (566)
|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 5566 567899999999999999999999999999999999999999999999888887764
Q ss_pred H
Q 047067 419 A 419 (566)
Q Consensus 419 ~ 419 (566)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=4.7e-05 Score=61.81 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 264 WNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
|..+..++...|++++|++.|++.+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444445555555555555444
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2e-05 Score=66.38 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL 340 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 340 (566)
.++..+...|...|++++|+..+++..+.... ++.. .....+..+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~ 58 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA-------------------------------AERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch-------------------------------HHHHHHHHHHHH
Confidence 35566666666777777777777666542100 0100 001233444445
Q ss_pred hhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHH
Q 047067 341 LGRAGLLDRALKFIREM----PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDP------HDSGPHILLANI 406 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~ 406 (566)
|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ .....+..++.+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 55555555555555443 00111 34556666777777788888877777776421 123467778888
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 047067 407 YASAGRLNDAARARKMMKE 425 (566)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~ 425 (566)
|...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 8889999999888887764
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00025 Score=73.52 Aligned_cols=168 Identities=13% Similarity=0.010 Sum_probs=124.0
Q ss_pred HHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 047067 246 IEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGL----------GKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG-- 310 (566)
Q Consensus 246 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 310 (566)
-++|.+.++.+. ..+..+|+.--..+...|+ ++++++.++++.+...+ +...|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 345666666663 2345667766666666666 78888888888875332 5667777777777777
Q ss_pred CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 047067 311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LLDRALKFIREM-PIEP-TAAVWGALLGACRMH----------- 376 (566)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 376 (566)
+++++.+.++.+.+.. +-+...|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 6688888886666654 335666777667777778 788888888887 5555 667888777776552
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 047067 377 ---KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415 (566)
Q Consensus 377 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 415 (566)
+.++++++.++++++++|++..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888655
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=1.9e-05 Score=63.57 Aligned_cols=96 Identities=13% Similarity=0.012 Sum_probs=55.6
Q ss_pred HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047067 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN 378 (566)
Q Consensus 301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 378 (566)
.+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33444555556666666554444332 224455556666666666677776666665 3344 45567777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 047067 379 VELGAYAAERIFELDPHDS 397 (566)
Q Consensus 379 ~~~a~~~~~~~~~~~p~~~ 397 (566)
+++|+..++++++++|++.
T Consensus 101 ~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCcCCC
Confidence 8888888888877777653
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=1.7e-05 Score=67.56 Aligned_cols=122 Identities=10% Similarity=-0.032 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNG------IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHY 334 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 334 (566)
...|......+.+.|++++|+..|.+.+..- -.|+...+ ... -+.+...|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence 3456667777777777777777777766520 01111100 000 01234577
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 047067 335 VTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS-GPHILLANI 406 (566)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 406 (566)
..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 78888899999999999998887 4445 567899999999999999999999999999999987 444444433
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=5.2e-06 Score=66.45 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHhHHhhC--CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047067 309 AGLLDEGQGYFALMKKHG--VEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAY 384 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 384 (566)
.|++++|...|+...+.+ -+.+...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355556666664444432 1223456666777777778888887777776 3344 45677778888888888888888
Q ss_pred HHHHHHhcCCCCCchH
Q 047067 385 AAERIFELDPHDSGPH 400 (566)
Q Consensus 385 ~~~~~~~~~p~~~~~~ 400 (566)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888876543
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=9.9e-05 Score=59.66 Aligned_cols=69 Identities=10% Similarity=-0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067 333 HYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI 401 (566)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 401 (566)
.+..+...|.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++++..|+++....
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 4445556666666666666666655 22232 456667777788888888888888888888887764433
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=2.1e-05 Score=65.68 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 333 HYVTFVDLLGRAGLLDRALKFIREM--------PIEPTA-AVW----GALLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
.|..+..++.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5566666666666666666665554 348865 588 999999999999999999999999999998766
Q ss_pred HH
Q 047067 400 HI 401 (566)
Q Consensus 400 ~~ 401 (566)
..
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 44
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=2.1e-05 Score=76.16 Aligned_cols=147 Identities=7% Similarity=-0.064 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL 341 (566)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 341 (566)
..|..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 44666777788889999999999988773 455432 223344444433221 13677788889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCChhHHHH
Q 047067 342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA-SAGRLNDAAR 418 (566)
Q Consensus 342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~ 418 (566)
.+.|++++|...+++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..|..+.. ..+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887 3445 56788889999999999999999999999999999888888888744 4567778888
Q ss_pred HHHHHHhCC
Q 047067 419 ARKMMKESG 427 (566)
Q Consensus 419 ~~~~m~~~g 427 (566)
.+++|....
T Consensus 321 ~~~~~l~~~ 329 (338)
T 2if4_A 321 MYKGIFKGK 329 (338)
T ss_dssp ---------
T ss_pred HHHHhhCCC
Confidence 888887644
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00032 Score=70.18 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--CCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhh--CC-Cc-c--H
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNG--I--APN-QVTFLCVLTACSHAGLLDEGQGYFALMKKH--GV-EP-E--E 331 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~-~p-~--~ 331 (566)
++..+...|...|++++|..++++....- . +|. ..++..++..|...|++++|..++...... .+ .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 45556666666666666666666654321 1 111 335556666666677777776666333221 11 11 1 2
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 332 AHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666667777777776665544
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.6e-05 Score=77.00 Aligned_cols=114 Identities=6% Similarity=-0.033 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047067 297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH 376 (566)
Q Consensus 297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 376 (566)
..+..+...+.+.|++++|...|...... .|+... +...|+.+++...+. ...|..+..++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 34556666777888888888888655543 233221 233444455444332 13788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 377 KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=3.6e-05 Score=78.01 Aligned_cols=122 Identities=10% Similarity=-0.005 Sum_probs=93.9
Q ss_pred HHccCCHHHHHHHHHhHHhh---CCC---c-cHHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047067 306 CSHAGLLDEGQGYFALMKKH---GVE---P-EEAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPTA-AVWGA 368 (566)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~---~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 368 (566)
+...|++++|..+++...+. -+. | ...+++.|..+|...|++++|..++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888777433321 111 2 2457888888899999999988888765 445665 58899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 369 LLGACRMHKNVELGAYAAERIFE-----LDPHDSGP---HILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 369 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
|...|...|++++|+.+++++++ ++|+.|.+ ...|..++...|++++|..++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 46776644 4578888999999999999999998754
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.8e-05 Score=62.23 Aligned_cols=92 Identities=10% Similarity=0.011 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHI 401 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 401 (566)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888889999999999999887 3344 67788999999999999999999999999999998 66777
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 047067 402 LLANIYASAGRLNDAARARK 421 (566)
Q Consensus 402 ~l~~~~~~~g~~~~a~~~~~ 421 (566)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888877777766654433
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=5.2e-05 Score=63.81 Aligned_cols=91 Identities=11% Similarity=0.067 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----
Q 047067 230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PN---- 295 (566)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 295 (566)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|+..+++..+.... ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999988632 12 246777888888899999999988887653110 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHH
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFA 320 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~ 320 (566)
...+..+...+...|++++|...+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2344455555555666666666553
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=6.1e-05 Score=58.13 Aligned_cols=65 Identities=23% Similarity=0.178 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999999999999999999999999999999998763
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=9.8e-06 Score=67.53 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=69.4
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067 342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN----------VELGAYAAERIFELDPHDSGPHILLANIYAS 409 (566)
Q Consensus 342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 409 (566)
.+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456677777777766 3345 56677777777776665 4699999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 047067 410 AG-----------RLNDAARARKMMKESG 427 (566)
Q Consensus 410 ~g-----------~~~~a~~~~~~m~~~g 427 (566)
.| ++++|.+.|++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998743
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=9.1e-05 Score=72.56 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45788899999999999999999999999999999999999999999999999999999999874
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=4.1e-05 Score=60.81 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=66.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 349 RALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 349 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355556555 3455 56788999999999999999999999999999999999999999999999999999999998763
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=0.00017 Score=73.00 Aligned_cols=97 Identities=9% Similarity=-0.037 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----------------AAVWGALLGACRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 393 (566)
...|..+...|.+.|++++|...|++. .+.|+ ...|..+..++...|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345556666777777777777777665 21222 5788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 394 PHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 394 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
|+++.+|..++.+|...|++++|...|++..+..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998743
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=8.6e-05 Score=55.70 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
+...+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|.++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677778888888888888888776 3334 5678888888899999999999999999999999988888888887
Q ss_pred HhcC
Q 047067 408 ASAG 411 (566)
Q Consensus 408 ~~~g 411 (566)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=0.00013 Score=73.95 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=89.2
Q ss_pred HHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chH
Q 047067 339 DLLGRAGLLDRALKFIREM---------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE-----LDPHDS---GPH 400 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~ 400 (566)
..+...|++++|..++++. +-.|+. .+++.|..+|...|++++|+.+++++++ ++|+.| .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999988765 334554 5899999999999999999999999986 355554 467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 047067 401 ILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQ 472 (566)
Q Consensus 401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (566)
..|+.+|..+|++++|..++++..+--.. .-...||...++...+.+...+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998752110 1123789988888777776655543
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=0.00017 Score=71.89 Aligned_cols=116 Identities=12% Similarity=0.121 Sum_probs=88.4
Q ss_pred HHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---ch
Q 047067 338 VDLLGRAGLLDRALKFIREM---------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE-----LDPHDS---GP 399 (566)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 399 (566)
+..+.+.|++++|.+++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+.| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999998888765 223333 5889999999999999999999999986 345544 46
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 047067 400 HILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIK 471 (566)
Q Consensus 400 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (566)
+..|+.+|..+|++++|..++++..+--.. .-...||...++...+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999998752100 112378999998888888777665
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.61 E-value=0.00033 Score=52.98 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 361 PTAAVWGALLGACRMHKN---VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 361 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
+|+..|..+..++...++ .++|..+++++++++|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467788888888765554 79999999999999999999999999999999999999999999998654
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00028 Score=55.12 Aligned_cols=67 Identities=6% Similarity=-0.118 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 361 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
++...|..+...+...|++++|+..+++++++.|.++.++..++.+|...|++++|...+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999999999999999999999999999999999999999998743
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.51 E-value=0.00018 Score=71.64 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=67.2
Q ss_pred hcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHHHH
Q 047067 343 RAGLLDRALKFIREM---------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE-----LDPHDS---GPHILLA 404 (566)
Q Consensus 343 ~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 404 (566)
..|++++|..++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+.+ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888877664 334554 5889999999999999999999999986 345544 4678899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 047067 405 NIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 405 ~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.49 E-value=0.0012 Score=54.20 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=54.2
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047067 337 FVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYAS--- 409 (566)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 409 (566)
|..+|...+.+++|.++|++.--.-+...+..|...|.. .++.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444455555555555555554112345555555555555 56667777777776665 345566777777777
Q ss_pred -cCChhHHHHHHHHHHhCCC
Q 047067 410 -AGRLNDAARARKMMKESGV 428 (566)
Q Consensus 410 -~g~~~~a~~~~~~m~~~g~ 428 (566)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6777777777777766654
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.48 E-value=0.0019 Score=66.93 Aligned_cols=150 Identities=9% Similarity=0.051 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC----------HHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067 274 HGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGL----------LDEGQGYFALMKKHGVEPEEAHYVTFVDLLG 342 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 342 (566)
....++|++.++++++. .|+ ...|+.--.++...|+ ++++...++.+.+.. +-+...|+.-.-++.
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34457889999999994 555 4556555555666666 899999997777655 346677887777888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 047067 343 RAG--LLDRALKFIREM-PIEP-TAAVWGALLGACRMHK-NVELGAYAAERIFELDPHDSGPHILLANIYASA------- 410 (566)
Q Consensus 343 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 410 (566)
+.| +++++.++++++ ...| +...|+.-.......| ..+++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999998 4444 7789998888888888 899999999999999999999999999988774
Q ss_pred -------CChhHHHHHHHHHHhC
Q 047067 411 -------GRLNDAARARKMMKES 426 (566)
Q Consensus 411 -------g~~~~a~~~~~~m~~~ 426 (566)
+.++++.+.+++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 5678888888887753
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00018 Score=59.96 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=60.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (566)
.+.+++++|++.+++..+.. +-+...|..+..++...++++.+.... +.+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHH
Confidence 34455666666666666532 113445555555555444433221111 1245677
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCC
Q 047067 352 KFIREM-PIEP-TAAVWGALLGACRMH-----------KNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 352 ~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 397 (566)
..|++. .+.| +..+|..+..+|... |++++|++.|+++++++|++.
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 766666 4455 345777777777665 589999999999999999985
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.35 E-value=0.00068 Score=50.55 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+...|..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34678888889999999999999999999999999999999999999999999999999998874
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.25 E-value=0.007 Score=49.52 Aligned_cols=108 Identities=14% Similarity=0.004 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 047067 175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK----SGSIEDAE 250 (566)
Q Consensus 175 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 250 (566)
++++|++.|++..+.| .|+.. +...+...+..+.|...+++..+.| +......|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666655554 22222 3344444445555555555555543 33344444444544 44555555
Q ss_pred HHHHhcC-CCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 047067 251 KVFNRLL-KRDVVSWNSMLTGCAQ----HGLGKATVRWFEKMLRN 290 (566)
Q Consensus 251 ~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 290 (566)
+.|++.. ..++.++..|...|.. .++.++|+.+|++..+.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5554442 2234444444444444 44445555555444443
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.19 E-value=0.0013 Score=51.84 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPH 395 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 395 (566)
+...+..+...|.+.|++++|...+++. ...| +...|..+..++...|++++|...+++++++.|.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4556666666777777777777777665 2234 4567777777788888888888888888877664
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.008 Score=57.40 Aligned_cols=142 Identities=12% Similarity=0.086 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067 257 LKRDVVSWNSMLTGCA--QHG---LGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE 330 (566)
Q Consensus 257 ~~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~ 330 (566)
...+..+|...+.+.. ..+ ...+|+.+|++.++ ..|+ ...+..+..++... ...+.. +
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~-------------~~~~~~-~ 253 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVR-------------HSQHPL-D 253 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-------------HHHSCC-C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH-------------hccCCC-c
Confidence 3446777777776643 223 34788999999988 4666 34444444333300 000100 0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREMPI-EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS 409 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 409 (566)
...... +..|.+....+.. ..+..+|..+...+...|++++|...++++++++|+ ...|..++.++.-
T Consensus 254 ~~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 000000 0112221222211 224445555444444455566666666666655543 3344555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 047067 410 AGRLNDAARARKMMKE 425 (566)
Q Consensus 410 ~g~~~~a~~~~~~m~~ 425 (566)
.|++++|...+++...
T Consensus 323 ~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 323 KGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5666666555555544
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0032 Score=62.53 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHhHHhh---CCCc----cHHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 047067 309 AGLLDEGQGYFALMKKH---GVEP----EEAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPTA-AVWGALLG 371 (566)
Q Consensus 309 ~g~~~~a~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~ 371 (566)
.|++++|..+++..... -+.| ...+++.|..+|...|++++|..++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777433321 1112 2457788888888888888888888765 445665 58899999
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 047067 372 ACRMHKNVELGAYAAERIFE-----LDPHDSGP 399 (566)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 399 (566)
.|...|++++|+.+++++++ ++|+.|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999999999986 46877644
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.94 E-value=0.0061 Score=50.09 Aligned_cols=66 Identities=9% Similarity=-0.042 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 360 EPTAAVWGALLGACRMHK---NVELGAYAAERIFELD-P-HDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 360 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.++..+.-.+..++.+.+ +.++++.+++.+++.+ | .+...+..|+-+|.+.|++++|+++++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 357777777777777777 5668888888888877 6 4566788888888999999999999888876
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0076 Score=59.94 Aligned_cols=98 Identities=9% Similarity=-0.092 Sum_probs=68.9
Q ss_pred HHHHccCCHHHHHHHHHhHHhh---CCCc----cHHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHH
Q 047067 304 TACSHAGLLDEGQGYFALMKKH---GVEP----EEAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPTA-AVW 366 (566)
Q Consensus 304 ~a~~~~g~~~~a~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~ 366 (566)
..+.+.|++++|...++...+. -+.| ...+++.|..+|...|++++|..++++. +..|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3444566777777776443321 1112 2456777888888888888888877765 445655 588
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchHH
Q 047067 367 GALLGACRMHKNVELGAYAAERIFE-----LDPHDSGPHI 401 (566)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 401 (566)
+.|...|...|++++|+.+++++++ ++|+.|.+-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999999999986 4787765443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.0022 Score=48.70 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 339 DLLGRAGLLDRALKFIREM-PIEP-TAA-VWGALLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
..+.+.|++++|...+++. ...| +.. .|..+..++...|++++|+..++++++++|+++.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444455555555555444 2222 233 44444455555555555555555555555554433
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.84 E-value=0.0059 Score=46.25 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=30.4
Q ss_pred HHHHHccCCHHHHHHHHHhHHhhCCCccHH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 303 LTACSHAGLLDEGQGYFALMKKHGVEPEEA-HYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 303 l~a~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
...+...|++++|...++...+.. +.+.. .+..+...|.+.|++++|.+.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555666666666664444432 22334 5555666666666666666666655
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.77 E-value=0.063 Score=58.27 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=70.9
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047067 137 DMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW 216 (566)
Q Consensus 137 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 216 (566)
.....+|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34566799999999887764 567899999999999999999999998743 3344455555677766665
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067 217 VHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNR 255 (566)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (566)
+-+.....|. ++....+|.+.|++++|.+++.+
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555441 23344556667777777776554
No 218
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.67 E-value=0.009 Score=45.55 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|...+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444444444444444444444444421 112334444444444444444444444
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.57 E-value=0.1 Score=56.59 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKML 288 (566)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (566)
...+|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455666665555444 234556666666666666666666666553
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.51 E-value=0.0093 Score=54.59 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=72.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CChhH
Q 047067 347 LDRALKFIREM-PIEPT---AAVWGALLGACRM-----HKNVELGAYAAERIFELDPHD-SGPHILLANIYASA-GRLND 415 (566)
Q Consensus 347 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 415 (566)
..+|...+++. .+.|+ ...|..|...|.. -|+.+.|.+.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666667666 56776 4688888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 047067 416 AARARKMMKESGVKKEPA 433 (566)
Q Consensus 416 a~~~~~~m~~~g~~~~~~ 433 (566)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877654443
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.33 E-value=0.00039 Score=67.78 Aligned_cols=238 Identities=9% Similarity=0.027 Sum_probs=164.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc
Q 047067 26 DIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA 105 (566)
Q Consensus 26 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 105 (566)
.+.+|..|..++.+.++..+|.+.| +...|+..|..+|.+..+.|.+++-+..+...++..-.|. .=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 4667888888888888888888776 4456777888999999999999988888766555433333 33567778888
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC------------------------CChH
Q 047067 106 GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES------------------------KNEV 161 (566)
Q Consensus 106 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~ 161 (566)
.+++. ..+.+. -.|+..-...+.+-+...|.++.|.-+|..+.. .++.
T Consensus 129 ~~rL~-elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 129 TNRLA-ELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp SCSSS-TTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hCcHH-HHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 88776 222111 135555567777888888888888888877652 3677
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067 162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241 (566)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (566)
+|-.+-.+|...+.+.-|.-.--.+.- .||. ...++..|...|.+++-..+++.-+... .....+++-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 899999999999988887655444432 2222 2345566778888888877777665322 456777888888888
Q ss_pred hcCCHHHHHHHHHhc----CCC-------ChhHHHHHHHHHHHcCCHHHHHH
Q 047067 242 KSGSIEDAEKVFNRL----LKR-------DVVSWNSMLTGCAQHGLGKATVR 282 (566)
Q Consensus 242 ~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~A~~ 282 (566)
|- ++++-.+.++.. .-| ....|..++-.|.+..+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 344444444332 112 45678889988988888887753
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.31 E-value=0.026 Score=43.38 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHhhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 330 EEAHYVTFVDLLGRAGLLDRALKFIREM-----P----IEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
+..-+..|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344556677777777777777777665 1 123457888999999999999999999999999999997665
Q ss_pred HHH
Q 047067 401 ILL 403 (566)
Q Consensus 401 ~~l 403 (566)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.15 Score=42.99 Aligned_cols=130 Identities=10% Similarity=0.095 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ 316 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 316 (566)
.+...++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456688888888887766 4577888888888888888888888887654 233444455567776665
Q ss_pred HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047067 317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERI 389 (566)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 389 (566)
.+-+.....| -++.....+.-.|+++++.+++.+.+.-|.... ....+|..+.|.++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 5554444333 134444556677888888888888763332221 123466667776666554
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.10 E-value=0.069 Score=50.98 Aligned_cols=38 Identities=11% Similarity=-0.137 Sum_probs=33.8
Q ss_pred HhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 390 FELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 390 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
+..+|.++.+|..++..+...|++++|...++++...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 35679999999999998888899999999999999875
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.07 E-value=0.035 Score=41.61 Aligned_cols=70 Identities=7% Similarity=0.012 Sum_probs=54.7
Q ss_pred CccHHHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 328 EPEEAHYVTFVDLLGRAGL---LDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
+.+...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..|+++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566677777777765444 68999999887 4456 556777788889999999999999999999998844
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.88 E-value=0.049 Score=44.70 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHhhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067 329 PEEAHYVTFVDLLGRAG---LLDRALKFIREM-PIE-P--TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP 399 (566)
Q Consensus 329 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 399 (566)
++..+.-.+.-++.+.+ +++++..++++. ... | +...+-.|.-++.+.|++++|.+.++++++.+|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555555666655 444666666655 212 4 23455566777899999999999999999999998633
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.83 E-value=0.52 Score=37.33 Aligned_cols=140 Identities=10% Similarity=-0.003 Sum_probs=96.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL 351 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (566)
.-.|..++..++..+..... +..-|+-+|--....-+-+-..++++.. |-..| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHH---hhhcC----------cHhhhcHHHHH
Confidence 34566777777777766532 3344444443333333333333333221 11112 24678888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067 352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK 429 (566)
Q Consensus 352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 429 (566)
..+-.++ .+....+..+......|+-+.-.++...++.-+|.++.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 8888875 355566777888899999999999999987777778889999999999999999999999999999984
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.70 E-value=2.3 Score=43.95 Aligned_cols=251 Identities=8% Similarity=0.019 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067 131 VGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS 210 (566)
Q Consensus 131 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 210 (566)
.-+.-+..+.+.+++.....++.. +..+...--....+....|+..+|......+=..| ...+.....++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334455566667777777776655 33344444445556666777666666666554444 2223334445555554443
Q ss_pred hHH--HHHHHHHHHHhC-----------CCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHH
Q 047067 211 LEQ--GKWVHAHVIKSG-----------GQLVA-FVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVV---SWNSMLTGCAQ 273 (566)
Q Consensus 211 ~~~--a~~~~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~ 273 (566)
+.. ..+=+..+...| ++++. .....++..+.+-..+ ....... .++.. .+..-+.-+.+
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 322 111111111111 11111 1222223222222221 2222211 11111 11112222333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHH
Q 047067 274 HGLGKATVRWFEKMLRNGIAPNQVTF----LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR 349 (566)
Q Consensus 274 ~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (566)
.+.+.|..+|......+ ..+.... ..+.......+...++...+....... ++.....-.+....+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHH
Confidence 36788888888776543 2232222 222222333442444555553333222 232223334444456788888
Q ss_pred HHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 350 ALKFIREMPIEP-TAAVW-GALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 350 A~~~~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
|...|+.|+-.+ +..-| -=+..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888885332 21211 1233456677888888888888765
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.79 Score=38.52 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047067 137 DMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW 216 (566)
Q Consensus 137 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 216 (566)
+....+|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4466789999999988776 4678899999999999999999999987743 3444445555677666655
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 047067 217 VHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL 257 (566)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (566)
+-+.....| . ++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555444444 1 2334445556777777777776543
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.05 E-value=0.15 Score=40.15 Aligned_cols=65 Identities=8% Similarity=-0.090 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 361 PTAAVWGALLGACRMHKNVEL---GAYAAERIFELD-P-HDSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 361 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
|+..+--.+..++....+... ++.+++.++..+ | ........|+-++.+.|++++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333333444444443332 555555555443 3 2223444555555555555555555555544
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.31 E-value=0.59 Score=42.81 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHhcCCCCh--hHHHHHHHH-HHHc--C------CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 047067 243 SGSIEDAEKVFNRLLKRDV--VSWNSMLTG-CAQH--G------LGKATVRWFEKMLRNGIAPN---QVTFLCVLTACSH 308 (566)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 308 (566)
.|+..+-.+.+.++.+.++ ..|..++.+ +... | ....|...+++.++ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444555555544333 356655543 3332 2 23455566666666 4555 3456666666666
Q ss_pred c-----CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc-CCHHHHHHHHHhC
Q 047067 309 A-----GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA-GLLDRALKFIREM 357 (566)
Q Consensus 309 ~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 357 (566)
. |+.++|.+.|++..+.+..-+..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 66666666665555543222345555555666553 6666666666554
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.42 Score=50.46 Aligned_cols=54 Identities=17% Similarity=-0.021 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067 371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK 424 (566)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 424 (566)
.-|...|+++.|+++.++++..-|++..+|..|+.+|.+.|+|+.|.-.+..+-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 336678999999999999999999999999999999999999999999998873
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.03 E-value=0.23 Score=37.84 Aligned_cols=65 Identities=15% Similarity=-0.053 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067 362 TAAVWGALLGACRMHKNVELGAYAAERIFELD-------PHDSGPHILLANIYASAGRLNDAARARKMMKES 426 (566)
Q Consensus 362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 426 (566)
+..-+-.|...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678888999999999999999999752 334567889999999999999999999999763
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.79 E-value=2.1 Score=34.29 Aligned_cols=66 Identities=14% Similarity=-0.029 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 360 EPTAAVWGALLGACRMHK---NVELGAYAAERIFELDPH-DSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 360 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
.|+..+--.+..++.+.. +..+++.+++.++..+|. .......|+-+|.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345544444445555444 345677777777776664 334555677777888888888887777765
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.26 E-value=0.19 Score=40.64 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=40.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
..+|.++|.++|+.++.+...-+..+...+..-.+.|+...|++++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 337888888888888877554455666777777788888889888888887554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.35 E-value=1.6 Score=34.31 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHhhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067 329 PEEAHYVTFVDLLGRAGLLDR---ALKFIREM-PIE-P--TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH 400 (566)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 400 (566)
|+..+--.+.-++.+.....+ +..++++. ... | .....-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 444444445555666555544 56666655 212 3 122344556678899999999999999999999987443
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.28 E-value=5.8 Score=31.49 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=80.1
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 047067 172 RKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEK 251 (566)
Q Consensus 172 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 251 (566)
-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+ |--.| ...||++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcC----------cHhhhcHHHHHH
Confidence 346666666666665542 23344444444333333333333333322 21111 124555555555
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC
Q 047067 252 VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE 328 (566)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 328 (566)
.+-.+.. +....+.-+..+...|+-++-.+++..+... .+|++.....+..||.+.|+..++.+++...-+.|++
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5554432 3344555677777888888888888875442 5677778888888888888888888888766776654
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.25 E-value=0.66 Score=45.19 Aligned_cols=67 Identities=19% Similarity=0.084 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 047067 367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE-----SGVKKEPA 433 (566)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 433 (566)
..++.++...|+.+++...++.++..+|-+...+..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556667788888888888888888888888888888888888888888888877653 47766553
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.21 E-value=12 Score=35.02 Aligned_cols=136 Identities=10% Similarity=0.064 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH----HHHHHHCCCCCChhHHHHHHHHH
Q 047067 28 AMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL----FSQMLRLGLKPNQFTLSSVLKAS 103 (566)
Q Consensus 28 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~ 103 (566)
..+.++..-|.+.+++++|++++-. -...+.+.|+...|-++ .+-+.+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4677788889999999999988643 23345566776655444 45556678889988888888877
Q ss_pred ccCCCchH----HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCC
Q 047067 104 GAGATDDK----FGRQVHAFCLKYG--YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKS 174 (566)
Q Consensus 104 ~~~~~~~~----~~~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 174 (566)
......+. ...+...+-.+.| -.-|+.....+...|.+.+++.+|+.-|=.-.++.+..+..|+.-+.+.+
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 76654331 2223333444444 23467778888889999999999988874322222356655554444444
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.04 E-value=1.6 Score=35.32 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=68.4
Q ss_pred CCCChhHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067 257 LKRDVVSWNSMLTGCAQHGLG------KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE 330 (566)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~ 330 (566)
...|..+|-..+...-+.|++ ++.+++|++.... ++|+.. +.++.=..++ .
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~------------~~wrrYI~LW---I------- 65 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKY------------GQNESFARIQ---V------- 65 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGG------------TTCHHHHHHH---H-------
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcccc------------ccHHHHHHHH---H-------
Confidence 345777888777777777877 7777777777664 555421 1111111111 0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067 331 EAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS 397 (566)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 397 (566)
-|.. +...+++++|.++|+.+ .+ +.=..+|-....--.++|+++.|.+++.+++.+.|.+.
T Consensus 66 --rYA~----~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 66 --RFAE----LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp --HHHH----HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred --HHHH----HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 0111 12225666777776665 10 11167787777777889999999999999999888764
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.79 E-value=1.9 Score=34.12 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067 379 VELGAYAAERIFELDPH-DSGPHILLANIYASAGRLNDAARARKMMKE 425 (566)
Q Consensus 379 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 425 (566)
..+++.+++.+++.+|. ....+..|+-++.+.|++++|+++.+.+.+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34566666666665553 234455666666777777777766666654
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.09 E-value=2.8e-05 Score=75.57 Aligned_cols=259 Identities=12% Similarity=0.068 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047067 130 YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG 209 (566)
Q Consensus 130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 209 (566)
.+|.-|..++.+.+++.+|.+-| +...|+..|..+|.+..+.|.+++-+..+.-.++..-.| ..=+.++-+|++.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhC
Confidence 34455555555555554444433 222344444555555555555555555443333221112 12223444455544
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-++
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK--- 195 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK--- 195 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT---
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh---
Confidence 4433222211 23333333444444444444444444443321 33344444555555555443222
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 047067 290 NGIAPNQVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVW 366 (566)
Q Consensus 290 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~ 366 (566)
.-+..||--+-.+|...+.+..|...- ..+.... ....++..|-+.|.++|-..+++.. +. +....++
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad------eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD------ELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS------CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH------HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHH
Confidence 235678999999999998887765544 3322211 2234777899999999999999876 43 3577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 367 GALLGACRMHKNVELGAYAAERIFE-LDPHDSGPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 367 ~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
+-|.-.|++.. ++.-.+.++.... ++ ---++.+|.+.-.|.|+.-++..-
T Consensus 267 TELaILYsKY~-PeKlmEHlklf~sriN------ipKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 267 TELAILYSKFK-PQKMREHLELFWSRVN------IPKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp HHHHHHHHSSC-TTHHHHHHTTSSSSSC------CTTTHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHhcc------HHHHHHHHHHHhhHHHHHHHHhcc
Confidence 88888888774 3333333322111 11 123678899999999988777643
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.76 E-value=20 Score=33.27 Aligned_cols=136 Identities=11% Similarity=0.099 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHH----HHHHHHHCCCCCChhHHHHHHHH
Q 047067 27 IAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAII----LFSQMLRLGLKPNQFTLSSVLKA 102 (566)
Q Consensus 27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~----l~~~m~~~g~~p~~~t~~~ll~a 102 (566)
...|.++..-|.+.+++++|.+++..- ...+.+.|+...|-+ +.+...+.++++|......++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 346777788888888998888876432 334556677665554 35555667888888887777777
Q ss_pred HccCCCch----HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhC
Q 047067 103 SGAGATDD----KFGRQVHAFCLKYGY--DWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARK 173 (566)
Q Consensus 103 ~~~~~~~~----~~~~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 173 (566)
+......+ ........+..+.|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..|+.-+.+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 65533222 133444444444432 247788889999999999999999887633322455555555444433
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.45 E-value=19 Score=40.56 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067 133 SSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE 212 (566)
Q Consensus 133 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 212 (566)
..++..+.+.+..+.|.++..-.+. +...--.+..+|...|++++|.+.|.+.- .|+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhc
Confidence 3456666777888877776665544 44444566778889999999999997752 2222211100 0000
Q ss_pred HHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hHHHHHHHHHHHcCCHHHHHH
Q 047067 213 QGKWVHAHVIKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL----LKRDV----VSWNSMLTGCAQHGLGKATVR 282 (566)
Q Consensus 213 ~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~ 282 (566)
. ...+.... ...-..-|..++..+-+.|.++.+.++-... ...+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 01111110 0112234555666666777766665554332 22221 258888999999999999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047067 283 WFEKMLRNGIAPNQVTFLCVLTACSHAGLLDE 314 (566)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 314 (566)
.+-.+.....+ ...+..|+...+..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88887764333 4455666666665555443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.26 E-value=9.5 Score=28.22 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067 112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGF 191 (566)
Q Consensus 112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 191 (566)
++..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++...|
T Consensus 24 EA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg- 98 (115)
T 2uwj_G 24 EALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS- 98 (115)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-
Confidence 55556666555543 33344444556788899999999999999999999988765 47788888888887887766
Q ss_pred CCCHHHHH
Q 047067 192 EPTHFSYS 199 (566)
Q Consensus 192 ~pd~~t~~ 199 (566)
.|....|.
T Consensus 99 ~p~~q~Fa 106 (115)
T 2uwj_G 99 DPALADFA 106 (115)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 45444443
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.82 E-value=10 Score=28.14 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067 112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGF 191 (566)
Q Consensus 112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 191 (566)
++..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++...|
T Consensus 25 EA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg- 99 (116)
T 2p58_C 25 EANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ- 99 (116)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-
Confidence 55566666555543 33444444556788899999999999999999999988876 46677788887777777666
Q ss_pred CCCHHHH
Q 047067 192 EPTHFSY 198 (566)
Q Consensus 192 ~pd~~t~ 198 (566)
.|....|
T Consensus 100 ~p~~q~F 106 (116)
T 2p58_C 100 DPRIQTF 106 (116)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444444
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.70 E-value=10 Score=28.07 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333333445677899999999999999999999987765 478888888888878877
Q ss_pred cCCCCCHHHHH
Q 047067 290 NGIAPNQVTFL 300 (566)
Q Consensus 290 ~g~~p~~~t~~ 300 (566)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 75 44444443
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.55 E-value=7.5 Score=32.07 Aligned_cols=112 Identities=10% Similarity=0.000 Sum_probs=57.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH-HHHH
Q 047067 236 LVDMYAKSGSIEDAEKVFNRLL-----KRDV-------VSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQV-TFLC 301 (566)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~ 301 (566)
-+..+...|.++.|+-+.+.+. ++++ .+...+..++...|++..|...|++.++.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3556666777777777666541 2232 244556667777777777777777754421 111111 1111
Q ss_pred HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 047067 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360 (566)
Q Consensus 302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 360 (566)
+.. ..... ......++.+.---+...|.+.|++++|+.+++.+|.+
T Consensus 106 ~~~---~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TGN---SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc---cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 00000 00112334444445677778888888888888887533
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.14 E-value=49 Score=37.15 Aligned_cols=31 Identities=10% Similarity=-0.063 Sum_probs=24.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047067 126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALE 156 (566)
Q Consensus 126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 156 (566)
+.++...-.+..+|..+|++++|.+.|.+..
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3445555567778999999999999998865
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.08 E-value=11 Score=27.95 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067 210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33332333445677899999999999999999999987765 467888888887777777
Q ss_pred cCCCCCHHHHH
Q 047067 290 NGIAPNQVTFL 300 (566)
Q Consensus 290 ~g~~p~~~t~~ 300 (566)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 34444443
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.25 E-value=30 Score=32.36 Aligned_cols=163 Identities=13% Similarity=0.027 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 047067 131 VGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTF----SEMLREGFEPTHFSYSSVFTALA 206 (566)
Q Consensus 131 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~~~~ 206 (566)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677779999999999987644 233456677776655443 55566788899888888888877
Q ss_pred ccCChH-HHHHHHHHH----HHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 047067 207 STGSLE-QGKWVHAHV----IKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKA 279 (566)
Q Consensus 207 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (566)
....-+ .=..+...+ .+.| ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 665422 112233333 3333 34466777888899999999999999884322222356655554444433211
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067 280 TVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 319 (566)
.++...-..++. |...+++..|...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAY 210 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHH
Confidence 122233333333 44457777777755
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.17 E-value=29 Score=32.14 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 047067 130 YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRT----FSEMLREGFEPTHFSYSSVFTAL 205 (566)
Q Consensus 130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~~~ 205 (566)
..+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.++++|..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3566777789999999999887644 23345667777665554 55566678889988888888777
Q ss_pred hccCChH-HHHHHHHHHH----HhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 047067 206 ASTGSLE-QGKWVHAHVI----KSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQ 273 (566)
Q Consensus 206 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 273 (566)
.....-+ .-..+...++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+..
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 6643221 1233333443 332 234667788888999999999999888763222245555555444433
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.48 E-value=8.7 Score=28.61 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 445667777777778889999999999999999999999999996655432 333456776654
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.79 E-value=8.4 Score=40.69 Aligned_cols=52 Identities=17% Similarity=-0.021 Sum_probs=27.3
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 047067 205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL 257 (566)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (566)
|...|+++.|..+-++.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 334455555555555555443 3444555555555555555555555555554
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.37 E-value=7.7 Score=32.01 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHH
Q 047067 398 GPHILLANIYASAGRLNDAARARKMM 423 (566)
Q Consensus 398 ~~~~~l~~~~~~~g~~~~a~~~~~~m 423 (566)
..-..++.+|.+.|++++|..+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 45567999999999999999998865
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.47 E-value=46 Score=32.68 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH----HHHhc
Q 047067 173 KSEGEKALRTFSEMLRE-----GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD----MYAKS 243 (566)
Q Consensus 173 ~g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~ 243 (566)
.|++++|++.+..+.+. +..........++..|...++++.....+..+.+..-... .....++. .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcC
Confidence 37889999888776542 3455667788899999999999998877766654322221 11233333 22223
Q ss_pred CC--HHHHHHHHHhcCC---C-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 047067 244 GS--IEDAEKVFNRLLK---R-------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN--GIAPN---QVTFLCVLTAC 306 (566)
Q Consensus 244 g~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~ 306 (566)
.. .+.-..+.+.... . .......|...|...|++.+|..++.++... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2223334433321 1 1123456778899999999999999998753 22222 23566677889
Q ss_pred HccCCHHHHHHHHHhHHh----hCCCcc--HHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 307 SHAGLLDEGQGYFALMKK----HGVEPE--EAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
...+++..|..++..+.. ....|+ ...|.+++..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999988855431 222232 346678888888999999998887765
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.34 E-value=18 Score=34.90 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHH-----hhCCCccHHH
Q 047067 266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK-----KHGVEPEEAH 333 (566)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 333 (566)
.++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|.... +.|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556666666666666666553 12355566666666666777666666663322 3466666544
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.16 E-value=82 Score=34.18 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=9.9
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 047067 169 GHARKSEGEKALRTFSEMLR 188 (566)
Q Consensus 169 ~~~~~g~~~~A~~~~~~m~~ 188 (566)
++...|+.+.+..+.+.+..
T Consensus 533 Gll~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLA 552 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHH
T ss_pred HhhhCCChHHHHHHHHHHHh
Confidence 33445555555555555443
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.67 E-value=27 Score=27.92 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHhhhcCCHH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 329 PEEAHYVTFVDLLGRAGLLD---RALKFIREM-PIEP-TA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
|+..+--.+.-++.+..+.+ ++..++++. ...| +. ...--|.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 44444444444555554433 445555544 1123 22 33445667789999999999999999999999863
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.94 E-value=26 Score=27.65 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067 365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSG 398 (566)
Q Consensus 365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 398 (566)
.+--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4444556677778888888888888888888753
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.50 E-value=16 Score=32.73 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCCcc---hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh---HHHHHHHHHc
Q 047067 31 NTILNAYAKCGCLDEARKLFDEMPVKDMV---TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQF---TLSSVLKASG 104 (566)
Q Consensus 31 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~ 104 (566)
+..+...++.|+++....+++.-...+.. .-.+.+...++.|+. ++++.+.+.|..|+.. -.+. +...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE----DIVELLLRHGADPVLRKKNGATP-FLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCH-HHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCH-HHHHH
Confidence 34455566677777777777654433221 111233344455554 3444445556554422 1112 22222
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhCC
Q 047067 105 AGATDDKFGRQVHAFCLKYGYDWNVYV--GSSLLDMYARFDQMDDAWFLFTALE 156 (566)
Q Consensus 105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~ 156 (566)
..++.+ +.+.+++.|..++... ..+.+...++.|+.+-...+++.-.
T Consensus 81 ~~~~~~-----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 81 IAGSVK-----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHTCHH-----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCCHH-----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 333433 3444455554443211 1123344456677766666666543
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=73.75 E-value=25 Score=26.17 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 349 RALKFIRE---MPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 349 ~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
+..+-++. +.+-|++.+..+.+.||++.+++..|.++++-+...-.+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44444443 367799999999999999999999999999988754433334555443
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.47 E-value=16 Score=28.88 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067 277 GKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339 (566)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 339 (566)
.-+...-++.+....+.|++......+.+|-+.+++..|..+|+-++.. ..+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 4456666777777888999999999999999999999999999765543 3444556776664
No 264
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=72.84 E-value=93 Score=32.26 Aligned_cols=80 Identities=8% Similarity=-0.106 Sum_probs=36.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh---
Q 047067 166 LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK--- 242 (566)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 242 (566)
....+.-.|+++.|++.+-.. ...|.+.+...+..+.-.+- .. .+..........-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~----~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DS----STRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CC----cccccCCCcccccHHHHHHHHHHHhh
Confidence 344455677888887776543 24555555555554433321 11 11111000011224556666654
Q ss_pred cCCHHHHHHHHHhc
Q 047067 243 SGSIEDAEKVFNRL 256 (566)
Q Consensus 243 ~g~~~~A~~~~~~~ 256 (566)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46667777766555
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.50 E-value=8.5 Score=34.64 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=32.5
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067 340 LLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD 396 (566)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 396 (566)
.+.+.|.+++|++....- .-+| |...-..|+.-++..|++++|.+-++...+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 344566666666655443 2234 44444555566666666666666666666666653
No 266
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=71.44 E-value=44 Score=30.91 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=43.4
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067 358 PIEPTA--AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG 427 (566)
Q Consensus 358 ~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 427 (566)
+++|.- .++.+-++.+.+++++..|..+.++++++.|... ..++|+++...-.+.+
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 566633 5778888889999999999999999999998633 3356788877776543
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.11 E-value=53 Score=27.89 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=22.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067 228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKML 288 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (566)
++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+.++.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3333334444444444443222222222233343333344444444443 23344444443
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.06 E-value=51 Score=27.71 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=24.3
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCC
Q 047067 24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73 (566)
Q Consensus 24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 73 (566)
.+|..+-...+..+++.|..+....+.+.+..+|...-...+.++.+.|.
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 44555555555555555554444444444444444444444444444443
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.48 E-value=90 Score=29.97 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=11.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 047067 267 MLTGCAQHGLGKATVRWFEKMLR 289 (566)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~ 289 (566)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.10 E-value=57 Score=25.79 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=38.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067 356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404 (566)
Q Consensus 356 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 404 (566)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+...+|..++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3467899999999999999999999999999988754333344565443
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.83 E-value=94 Score=27.91 Aligned_cols=50 Identities=4% Similarity=0.040 Sum_probs=22.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhH
Q 047067 272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALM 322 (566)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 322 (566)
.+.|..++|++....-++.. +-|...-..++..++-.|+++.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555554444431 123333344444455555555555544333
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.34 E-value=1.8e+02 Score=30.21 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHHHH-----hhhcCCHHHHHHHHHhCCCCCC
Q 047067 331 EAHYVTFVDL-----LGRAGLLDRALKFIREMPIEPT 362 (566)
Q Consensus 331 ~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~p~ 362 (566)
..++..|.++ +...|+++.|++.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455554433 3678999999999999966664
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.28 E-value=84 Score=26.53 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067 126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205 (566)
Q Consensus 126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 205 (566)
.++..+....+..+.+.++.+....+.+.+..+|...-...+.++.+.|.. +++..+..+.. .+|...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 345555555556666666554444444445555555555555555555543 34444444443 34555555566666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 047067 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS 243 (566)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 243 (566)
...+. ..+...+..+.+. ++..+-...+.++.+.
T Consensus 168 ~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 66655 3344444444443 2344444444444443
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.68 E-value=66 Score=25.13 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCH
Q 047067 132 GSSLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSE--GEKALRTFSEMLREGFEPTH 195 (566)
Q Consensus 132 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~ 195 (566)
.+.++.=|...|+.++|.+.++++..| ..+...++..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356778888899999999999998765 33455566666666542 35677888888877754433
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.30 E-value=24 Score=34.52 Aligned_cols=60 Identities=7% Similarity=-0.063 Sum_probs=34.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhHHhhCCC--ccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067 298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVE--PEEAHYVTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
+...+..-+.+.|+++.|.+.+..+...... .-...+-..+.++...+++..|...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445566666666666666666444443222 22445555666666666666666666554
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.86 E-value=59 Score=31.72 Aligned_cols=88 Identities=14% Similarity=0.024 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHH--H
Q 047067 232 VGNTLVDMYAKSGSIEDAEKVFNRLLK------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLR---NGIAPNQVTF--L 300 (566)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~--~ 300 (566)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..+..+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 344566667777777777777766631 2234566666777777777777777776643 2222222111 1
Q ss_pred HHHHHHHccCCHHHHHHHH
Q 047067 301 CVLTACSHAGLLDEGQGYF 319 (566)
Q Consensus 301 ~ll~a~~~~g~~~~a~~~~ 319 (566)
.-...+...+++..|.+.|
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f 231 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLL 231 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHH
Confidence 1111234467777777777
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.24 E-value=21 Score=32.00 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047067 138 MYARFDQMDDAWFLFTA 154 (566)
Q Consensus 138 ~y~~~g~~~~A~~~f~~ 154 (566)
..++.|+++....+++.
T Consensus 11 ~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 11 KAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33444454444444443
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.23 E-value=49 Score=25.91 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCC
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLKRD---VVSWNSMLTGCAQHGL--GKATVRWFEKMLRNGIAPN 295 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 295 (566)
+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567888888899999999999887652 2344445555555432 3566777777777665443
No 279
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.78 E-value=1.3e+02 Score=26.86 Aligned_cols=16 Identities=13% Similarity=0.080 Sum_probs=7.1
Q ss_pred CchhHHHHHHHHHHhc
Q 047067 127 WNVYVGSSLLDMYARF 142 (566)
Q Consensus 127 ~~~~~~~~li~~y~~~ 142 (566)
++..+....+.++.+.
T Consensus 103 ~~~~vr~~a~~aL~~l 118 (280)
T 1oyz_A 103 KSACVRATAIESTAQR 118 (280)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3444444444444443
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.06 E-value=40 Score=29.17 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 047067 138 MYARFDQMDDAWFLFTAL 155 (566)
Q Consensus 138 ~y~~~g~~~~A~~~f~~~ 155 (566)
..+..|+.+-...+++..
T Consensus 85 ~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 334455555555555543
No 281
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.86 E-value=1.3e+02 Score=26.64 Aligned_cols=18 Identities=6% Similarity=-0.199 Sum_probs=6.6
Q ss_pred CcHhHHHHHHHHHHhcCC
Q 047067 228 LVAFVGNTLVDMYAKSGS 245 (566)
Q Consensus 228 ~~~~~~~~li~~~~~~g~ 245 (566)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 333433344444444443
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.07 E-value=63 Score=26.18 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCH
Q 047067 132 GSSLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSE--GEKALRTFSEMLREGFEPTH 195 (566)
Q Consensus 132 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~ 195 (566)
.+.++.=|...|+.++|.+.++++..| ..+...++..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356778888899999999999998765 23455566666666432 35577888888877754433
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.06 E-value=2.1e+02 Score=28.57 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=93.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---
Q 047067 229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV-------VSW-NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV--- 297 (566)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 297 (566)
...++|.++..|...+.++.|..+..+..-|.. ..| --+...+.-.+++.+|.+.|......- +++..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccchhhhh
Confidence 356778889999999999999999998854421 122 224556777899999999888877642 22211
Q ss_pred ----H--HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047067 298 ----T--FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLG 371 (566)
Q Consensus 298 ----t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 371 (566)
. |..++..+ .|++.+ ..+|. ..+.......|..|+.++ +.|++++-...++.-. .
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~---q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFH---QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHT---TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhh---chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1 11111111 233221 11111 111111233466676665 6677776655555431 2
Q ss_pred HHHhcCCHHHHHHHHHHHH-----hcCCCCCchHHHHHHHHHhcC--ChhHHHHHHHHHHhCCC
Q 047067 372 ACRMHKNVELGAYAAERIF-----ELDPHDSGPHILLANIYASAG--RLNDAARARKMMKESGV 428 (566)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~ 428 (566)
.+...|.+....++-.-+. .+...-. -..+.++..+.+ ..++|..+..+|+..|.
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~Ys--rIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYK--KISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSS--EECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 2334454444443333222 1221111 112333333332 34678999999988775
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.88 E-value=37 Score=30.73 Aligned_cols=19 Identities=5% Similarity=-0.151 Sum_probs=9.5
Q ss_pred HHHHHhcCChhHHHHHHcc
Q 047067 34 LNAYAKCGCLDEARKLFDE 52 (566)
Q Consensus 34 i~~~~~~g~~~~A~~~f~~ 52 (566)
+...++.|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334445555555555544
No 285
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.95 E-value=2.1e+02 Score=27.95 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHhCCC-----C----ChHHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHH----Hhcc
Q 047067 143 DQMDDAWFLFTALES-----K----NEVSWNALIAGHARKSEGEKALRTFSEMLRE-GFEPTHFSYSSVFTA----LAST 208 (566)
Q Consensus 143 g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~~----~~~~ 208 (566)
|+++.|.+.+-.+.+ . .......++..+...++++...+.+.-+... |..+.. ...+++. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 678888877655442 1 3445777888999999999988877666543 333322 2333333 2333
Q ss_pred CChHHHHHHHHHHHHh------C-CCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-----ChhHHHHHHH
Q 047067 209 GSLEQGKWVHAHVIKS------G-GQL---VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK----R-----DVVSWNSMLT 269 (566)
Q Consensus 209 ~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~ 269 (566)
...+.-.. ...+.. | +-. ...+...|...|...|++.+|.+++..+.. . -+..+...+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 112211 1 111 223446688999999999999999988731 1 1346777788
Q ss_pred HHHHcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh
Q 047067 270 GCAQHGLGKATVRWFEKMLR----NGIAPN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR 343 (566)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 343 (566)
.|...+++.+|..++++... ....|+ ...+...+..+.+.+++.+|.+ .|..+...+..
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~---------------~y~e~~~~~~~ 250 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ---------------YLQEIYQTDAI 250 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH---------------HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH---------------HHHHHHhcccc
Confidence 89999999999999998743 111222 1233444444555555554432 35556666666
Q ss_pred cCCHHHHHHHHH
Q 047067 344 AGLLDRALKFIR 355 (566)
Q Consensus 344 ~g~~~~A~~~~~ 355 (566)
.++.......+.
T Consensus 251 ~~d~~~~~~~L~ 262 (445)
T 4b4t_P 251 KSDEAKWKPVLS 262 (445)
T ss_dssp HSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 666655444443
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.48 E-value=46 Score=27.01 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCC
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNRLLKRD---VVSWNSMLTGCAQHGL--GKATVRWFEKMLRNGIAP 294 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 294 (566)
+.++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 567888888899999999999886652 2344445555554332 345667777777666443
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.47 E-value=53 Score=29.69 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=48.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 047067 336 TFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415 (566)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 415 (566)
+.+...+..|+.+-+..+++.-+...+...-.+.+...+..|+.+.+..+++.-...+..+..-....+..-...|+.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--
Confidence 344445567777776666665532223212234444556778888887777776555433321111111112234443
Q ss_pred HHHHHHHHHhCCCccCC
Q 047067 416 AARARKMMKESGVKKEP 432 (566)
Q Consensus 416 a~~~~~~m~~~g~~~~~ 432 (566)
++.+.+.+.|..+..
T Consensus 209 --~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 --EMLQALFKYDINIYS 223 (285)
T ss_dssp --HHHHHHTTSCBCSTT
T ss_pred --HHHHHHHHcCCCCCC
Confidence 455666677776544
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.17 E-value=1.4e+02 Score=25.35 Aligned_cols=104 Identities=12% Similarity=0.201 Sum_probs=71.0
Q ss_pred HHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067 349 RALKFIREM-PIEPTA---AVWGALLGACRMHKNVELGAYAAERIFE--LDPHDSGPHILLANIYASAGRLNDAARARKM 422 (566)
Q Consensus 349 ~A~~~~~~~-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 422 (566)
.+...|... ..+-|. ..|-.++..+ ..++...+..+|..+.. ++-.-+..|...+..+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444 233454 3565555554 24446688888888875 4566667888899999999999999999999
Q ss_pred HHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccC
Q 047067 423 MKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPD 478 (566)
Q Consensus 423 m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~ 478 (566)
-++++-.| ...+.....+...+|...+++.|
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 88876544 23345566678888888877443
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.86 E-value=81 Score=30.47 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=49.7
Q ss_pred HHHHHHhcCChhHHHHHHccCCCCCc---chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhH--HHHHHHHHccCC
Q 047067 33 ILNAYAKCGCLDEARKLFDEMPVKDM---VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFT--LSSVLKASGAGA 107 (566)
Q Consensus 33 li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~ 107 (566)
.+...+..|+++-+..+++.-..++. ...+ .+...++.|+.+ +.+.+.+.|..++... -.+.|...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 45555677888888877776443332 2222 333334455543 3333334444433211 112222233334
Q ss_pred CchHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHh
Q 047067 108 TDDKFGRQVHAFCLKYGYDWNVYV--GSSLLDMYARFDQMDDAWFLFTA 154 (566)
Q Consensus 108 ~~~~~~~~i~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~ 154 (566)
+.+ +.+.+++.|..++... ..+.+...++.|+.+.+..+++.
T Consensus 92 ~~~-----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 92 HTN-----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp CHH-----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHH-----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 443 3334444454433211 11223334455666555555554
No 290
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.96 E-value=74 Score=29.36 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=43.8
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067 357 MPIEPTA--AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 357 ~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 428 (566)
.+++|.. .++.+-++...+++++..|..+.++++++.|... ..++|++++..-.+.+.
T Consensus 190 c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 190 SNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 3556633 5777888889999999999999999999988632 23568888877766543
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=43.80 E-value=2.9e+02 Score=28.39 Aligned_cols=363 Identities=11% Similarity=-0.017 Sum_probs=190.6
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCch
Q 047067 31 NTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD 110 (566)
Q Consensus 31 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 110 (566)
+.-+..+++.+++.....++.. ++.+...--....+....|+..+|......+-..| .........++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4446667777888888887766 43344444445666777888777877777766554 233445566666666555444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC---------------------------CCChH--
Q 047067 111 KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALE---------------------------SKNEV-- 161 (566)
Q Consensus 111 ~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---------------------------~~~~~-- 161 (566)
. ..++. -+......|+...|..+...++ .++..
T Consensus 154 -~----------------~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~ 215 (618)
T 1qsa_A 154 -P----------------LAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTR 215 (618)
T ss_dssp -H----------------HHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHH
T ss_pred -H----------------HHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhH
Confidence 1 11111 1122222233333333333221 11111
Q ss_pred -HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHhccCChHHHHHHHHHHHHhCCCCcHhHHHHH
Q 047067 162 -SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFT----ALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236 (566)
Q Consensus 162 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (566)
....-+.-+.+ .+++.|...|....... ..+......+-. .....+...++...+....... .+.....-.
T Consensus 216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 291 (618)
T 1qsa_A 216 QMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (618)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHH
Confidence 11112222333 37788999998886543 233333332222 2333442445555555544433 333334445
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067 237 VDMYAKSGSIEDAEKVFNRLLKRD---VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313 (566)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 313 (566)
+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+++... . +|-.++. -.+.|..-
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~ 364 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEY 364 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCC
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCC
Confidence 555567899999999999997542 222223455777899999999999998752 2 3444432 22233210
Q ss_pred HHHHHHHhHHhhCCCcc---H---HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047067 314 EGQGYFALMKKHGVEPE---E---AHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAE 387 (566)
Q Consensus 314 ~a~~~~~~~~~~~~~p~---~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 387 (566)
. +.. ....+. . ..-..-+..+...|...+|...+....-..+......+.......|..+.++....
T Consensus 365 ~----~~~---~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 365 E----LKI---DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp C----CCC---CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C----CCC---CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 000 001110 0 01112345677889999998887766213344434445455567888888876665
Q ss_pred HHHhcCC---CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 047067 388 RIFELDP---HDSGPHILLANIYASAGRLNDAARARKMMKESGVKKE 431 (566)
Q Consensus 388 ~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 431 (566)
+....+. .-|..|...+.-+++.-.++...-.---..+.++.|.
T Consensus 438 ~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 438 AGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 4332220 1123456666666666666655444334456666654
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.40 E-value=3e+02 Score=30.08 Aligned_cols=85 Identities=2% Similarity=-0.154 Sum_probs=53.0
Q ss_pred HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCC-----------------
Q 047067 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPT----------------- 362 (566)
Q Consensus 302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~----------------- 362 (566)
++..|...|..+.+.++.... +.+...--.+..+|..+|++++|.+.|+++ ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 666777788887776654432 223222235677888999999999999987 32111
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067 363 ------AAVWGALLGACRMHKNVELGAYAAERIFE 391 (566)
Q Consensus 363 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 391 (566)
..-|.-++..+-.++-++-+.++.+.+++
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 01334444555566666666666666665
No 293
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.24 E-value=1.5e+02 Score=24.65 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047067 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS 207 (566)
Q Consensus 128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 207 (566)
|..+....+..+.+.+..+....+.+.+..+|...-...+.++...+.. ++...+.++.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3334444444444444433334444444444544444444444444443 23333333332 2444444445555555
Q ss_pred cCCh
Q 047067 208 TGSL 211 (566)
Q Consensus 208 ~~~~ 211 (566)
.++.
T Consensus 103 ~~~~ 106 (201)
T 3ltj_A 103 IGDE 106 (201)
T ss_dssp HCCG
T ss_pred hCcH
Confidence 4443
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.97 E-value=2.4e+02 Score=26.51 Aligned_cols=80 Identities=5% Similarity=0.019 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL--LDEGQGYFALMKKHGVEPEEAHYVTFVDLL 341 (566)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 341 (566)
.+.++.-|...|+.++|...++++..-...+ .+....+..+.-+.++ .+...+++..+...|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4666777777777777777777775321111 2334444445554332 234555555555556555554444444444
Q ss_pred hhc
Q 047067 342 GRA 344 (566)
Q Consensus 342 ~~~ 344 (566)
...
T Consensus 299 ~~l 301 (358)
T 3eiq_C 299 NEI 301 (358)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 295
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=39.18 E-value=12 Score=22.42 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=9.8
Q ss_pred cccccCCCchhh
Q 047067 522 NIRVCGDCHSAF 533 (566)
Q Consensus 522 ~~~~c~~~~~~~ 533 (566)
++|+|.+|+.-.
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 799999998543
No 296
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=38.31 E-value=10 Score=22.43 Aligned_cols=13 Identities=46% Similarity=1.114 Sum_probs=9.7
Q ss_pred ccc-cccccCCCCC
Q 047067 553 HHF-RDGFCSCGDY 565 (566)
Q Consensus 553 h~~-~~g~cs~~~~ 565 (566)
|.. .+|.|||+-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 5899999976
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.69 E-value=83 Score=27.03 Aligned_cols=18 Identities=6% Similarity=0.001 Sum_probs=9.9
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 047067 138 MYARFDQMDDAWFLFTAL 155 (566)
Q Consensus 138 ~y~~~g~~~~A~~~f~~~ 155 (566)
..++.|+.+-...+++.-
T Consensus 122 ~A~~~~~~~~~~~Ll~~g 139 (241)
T 1k1a_A 122 VAVNTECQETVQLLLERG 139 (241)
T ss_dssp HHHHHTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 344556666666665543
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.18 E-value=2.3e+02 Score=26.43 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCC---hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHH---HHHHHHH
Q 047067 132 GSSLLDMYARFDQMDDAWFLFTALESKN---EVSWNALIAGHARKS-EGEKALRTFSEMLREGFEPTHFS---YSSVFTA 204 (566)
Q Consensus 132 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~~ 204 (566)
...++.=|...|+.++|.+.++++..|. ......+..++-+.. .-+.+..++..+.+.|+-+.... |..++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 3567888999999999999999998763 233344444433322 23456677777777664333222 3333333
Q ss_pred HhccC-ChHHHHHHHHHHHH
Q 047067 205 LASTG-SLEQGKWVHAHVIK 223 (566)
Q Consensus 205 ~~~~~-~~~~a~~~~~~~~~ 223 (566)
+-... +...|...+..+..
T Consensus 94 l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHG
T ss_pred ChHhhcCccchHHHHHHHHH
Confidence 32222 44455555555543
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.00 E-value=1.5e+02 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 329 PEEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
++...-...+..+.+.|+.++|.++|-+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3444455566777777777777777643
No 300
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=35.23 E-value=11 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.1
Q ss_pred ceEEEecCCccccccccccCCC
Q 047067 542 REIIVRDTNRFHHFRDGFCSCG 563 (566)
Q Consensus 542 ~~~~~~~~~~~h~~~~g~cs~~ 563 (566)
..|=+.|.+..|+|+|||-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677889999999999996543
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.68 E-value=1.2e+02 Score=25.07 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=28.2
Q ss_pred HHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC
Q 047067 36 AYAKCGCLDEARKLFDEMP----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN 92 (566)
Q Consensus 36 ~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 92 (566)
..+..|+.+....++..-. .+|..-++.|..+ ++.|+. ++++.+.+.|..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCC
Confidence 3456788888888887654 2233333344333 344543 44555556665554
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.64 E-value=86 Score=26.81 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=10.3
Q ss_pred HHhcCChhHHHHHHccC
Q 047067 37 YAKCGCLDEARKLFDEM 53 (566)
Q Consensus 37 ~~~~g~~~~A~~~f~~~ 53 (566)
.++.|+++....+++.-
T Consensus 16 A~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAG 32 (240)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHcC
Confidence 44566766666666543
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.39 E-value=3.4e+02 Score=26.61 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=43.6
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCC
Q 047067 18 ILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPV---KDMVTWTALISGYSQNDQPENAIILFSQMLRLG 88 (566)
Q Consensus 18 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 88 (566)
..+.|++--...|..-.+.+...|++++|.++--..|. ++..+.+.+-..=.+.|+..--+..|..+.+.|
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 34456655555666666777778888888887776653 444454444444444566666666666666655
No 304
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.18 E-value=2.3e+02 Score=24.14 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE 330 (566)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~ 330 (566)
.|-..+..+ ..+...++.++|..|...|+--. +.-|......+...|++.+|.++|..-.+.+-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344444433 13346678888888888776544 45566666667777888888888876666666664
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.63 E-value=1.5e+02 Score=25.95 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=13.7
Q ss_pred HHHHHhCCChhHHHHHHHHHH
Q 047067 167 IAGHARKSEGEKALRTFSEML 187 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m~ 187 (566)
+..+....++++|++++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455666677777777766654
No 306
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.47 E-value=2.3e+02 Score=23.99 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067 347 LDRALKFIREMPIEPTA--AVW-----GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN 405 (566)
Q Consensus 347 ~~~A~~~~~~~~~~p~~--~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 405 (566)
++.|+.+++.+.-.-|. ... ...+..|.+.|.+++|.+++++..+-.|++...-.-|..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 45667777777322221 111 223456889999999999999988877665544333333
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.12 E-value=51 Score=29.02 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=28.4
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCChhH-------HHHHHHHHc--cCCCchHHHHHHHHHH
Q 047067 67 GYSQNDQPENAIILFSQMLRLGLKPNQFT-------LSSVLKASG--AGATDDKFGRQVHAFC 120 (566)
Q Consensus 67 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~--~~~~~~~~~~~i~~~~ 120 (566)
..++.|+.+....+++.+.+.|..++... .+.+..|+. +.|..+ ..+.+.+.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~-~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND-TIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCT-HHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHH-HHHHHHHhc
Confidence 34456777776667776666665555332 233333332 456666 555555543
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.99 E-value=2e+02 Score=23.17 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=36.4
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 047067 382 GAYAAERIFE--LDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKK 430 (566)
Q Consensus 382 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 430 (566)
+..+|..+.. ++-.-+..|...+..+...|++.+|.++++.-++++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777765 445555677788888888889999988888887766543
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.58 E-value=69 Score=23.51 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 047067 244 GSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATV 281 (566)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 281 (566)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999998888899999999987767665543
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.48 E-value=73 Score=27.28 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=9.6
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 047067 136 LDMYARFDQMDDAWFLFTA 154 (566)
Q Consensus 136 i~~y~~~g~~~~A~~~f~~ 154 (566)
+...++.|+.+-+..+++.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHcCCHHHHHHHHHc
Confidence 3344455565555555543
No 311
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.45 E-value=2.5e+02 Score=23.81 Aligned_cols=43 Identities=7% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067 267 MLTGC---AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310 (566)
Q Consensus 267 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 310 (566)
+|+++ .+..+.+.|+-++-+|++.| .|..+.-..++.+....|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45554 45689999999999999999 777666666666665555
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.36 E-value=1.3e+02 Score=23.96 Aligned_cols=43 Identities=9% Similarity=-0.061 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG 104 (566)
Q Consensus 62 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 104 (566)
..++..+...+..-.|.++++.+.+.+...+..|....|+.+.
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 3344444444444455555555554443344444443443333
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.80 E-value=60 Score=23.84 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHH
Q 047067 143 DQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180 (566)
Q Consensus 143 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 180 (566)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999998899999999887777766554
No 314
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=29.64 E-value=5.8e+02 Score=27.74 Aligned_cols=248 Identities=8% Similarity=-0.044 Sum_probs=121.9
Q ss_pred HHhcCCHHHHHHHHHhCCC----CC--hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 047067 139 YARFDQMDDAWFLFTALES----KN--EVSWNALIAGHARKSEGEKALRTFSEMLREGF--E-----PTHFSYSSVFTAL 205 (566)
Q Consensus 139 y~~~g~~~~A~~~f~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----pd~~t~~~ll~~~ 205 (566)
....|+.+++..+++.... .+ +..-..+.-|....|...+++.++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456777777777776543 12 22334444566667766677777776654321 0 1111111222222
Q ss_pred hccCC-hHHHHHHHHHHHHhCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--hhHHHHHHHHHHHcCCHHH
Q 047067 206 ASTGS-LEQGKWVHAHVIKSGGQLVA--FVGNTLVDMYAKSGSIEDAEKVFNRLLK-RD--VVSWNSMLTGCAQHGLGKA 279 (566)
Q Consensus 206 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~ 279 (566)
+..|. -+++...+..++...- +.. ...-+|.-.|.-.|+-+....+++.+.+ .+ +.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22332 2344455555544321 111 1222344455566777777777665532 22 2223334444557788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067 280 TVRWFEKMLRNGIAPNQVTFL---CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE 356 (566)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (566)
+..+.+.+... ..| ..-|. .+.-+|+..|+.....+++..+... ...++.....+.-++.-.|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 88888887763 122 22232 3344677788887777777665542 223333333333344446666666666654
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 047067 357 M--PIEPTAAVWGALLGACRMHKNV-ELGAYAAERIF 390 (566)
Q Consensus 357 ~--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 390 (566)
+ ...|.+..-..+.-+....|+. ..+..++.++.
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 4 1133332222222233333332 44555555554
No 315
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.09 E-value=3.4e+02 Score=24.87 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 047067 132 GSSLLDMYARFDQMDDAWFLFTALESK 158 (566)
Q Consensus 132 ~~~li~~y~~~g~~~~A~~~f~~~~~~ 158 (566)
...++.-|...|+.++|...++++..|
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 356777788889999999999988765
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.16 E-value=1.6e+02 Score=29.37 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-CccH--HHH-HHHHHHhhhcCCHHHHHHHHHhC
Q 047067 296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPEE--AHY-VTFVDLLGRAGLLDRALKFIREM 357 (566)
Q Consensus 296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 357 (566)
...++.+++.|.+.+.+++|..+.....-... .++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45667777777777888888877755431100 1111 122 23445666677777777776654
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.86 E-value=1.9e+02 Score=22.84 Aligned_cols=39 Identities=3% Similarity=-0.126 Sum_probs=15.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067 167 IAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 205 (566)
+..+...+.+-.|.++++.+.+.+...+..|.-..|+.+
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 333333334444444444444443333344433333333
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.82 E-value=4.6e+02 Score=28.52 Aligned_cols=121 Identities=15% Similarity=0.059 Sum_probs=72.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhcc
Q 047067 135 LLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF------SYSSVFTALAST 208 (566)
Q Consensus 135 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~------t~~~ll~~~~~~ 208 (566)
++..+...|..+-|.++...++. +...--.+..+|...|++++|.+.|++.- .|+..+.. ....++....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e-- 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH-- 891 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTT--
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccc--
Confidence 66677788888888877666665 54444567788999999999999998763 34332211 1111111100
Q ss_pred CChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hHHHHHHHHHHHcC
Q 047067 209 GSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL----LKRDV----VSWNSMLTGCAQHG 275 (566)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g 275 (566)
.......-|..++..+-+.+.++.+.++-+.. ...|. ..|+.++.+.+..|
T Consensus 892 ----------------~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 892 ----------------HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ----------------TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00112235677777788888877766655433 23333 36777777766544
No 319
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.70 E-value=2.5e+02 Score=22.94 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=37.5
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 047067 382 GAYAAERIFE--LDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKK 430 (566)
Q Consensus 382 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 430 (566)
...+|..+.. ++-.-+..|...+..+...|++.+|.++++.-++++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5567777765 445566678888888999999999999999888876544
No 320
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=27.46 E-value=51 Score=23.79 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCCcc
Q 047067 454 PQRAMIHKKWREISEKIKQIGYVPDSSHV 482 (566)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~g~~p~~~~~ 482 (566)
+...++...+++...+++..|+.||...+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 45667788888888999999999996543
No 321
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.27 E-value=2.3e+02 Score=23.94 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHH---HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067 165 ALIAGH---ARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS 210 (566)
Q Consensus 165 ~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 210 (566)
-+|+++ .+..+++.|+-.+-+|++.|-.|....-..++-+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 345554 4568999999999999999977776666666666655543
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.04 E-value=2.9e+02 Score=23.43 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=37.2
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhCC
Q 047067 171 ARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS-----LEQGKWVHAHVIKSGG 226 (566)
Q Consensus 171 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 226 (566)
.+..+++.|+-.+-+|++.| .|....-..++-+....|. +..+...++.....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 45689999999999999999 7766666666666666554 2334444444455554
No 323
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.39 E-value=3.8e+02 Score=24.54 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCCCc--chHHHHHHHHHhCCCc--cHHHHHHHHHHH
Q 047067 30 QNTILNAYAKCGCLDEARKLFDEMPVKDM--VTWTALISGYSQNDQP--ENAIILFSQMLR 86 (566)
Q Consensus 30 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~--~~A~~l~~~m~~ 86 (566)
...++.=|...|+.++|...++++..|.. ..-..+|......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 45678888889999999999999986642 1222333333333322 344556677764
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.83 E-value=4.8e+02 Score=25.57 Aligned_cols=132 Identities=10% Similarity=0.026 Sum_probs=78.0
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047067 117 HAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193 (566)
Q Consensus 117 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 193 (566)
...+.+.|++--...|.--.+.+...|++++|.++--..+. ++..|.+.+-..=...|+..--+.+|..+.+.| +.
T Consensus 349 ~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~L 427 (494)
T 1bpo_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QL 427 (494)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-cc
Confidence 34455666666666676677788888999999988877765 466666665555555677777777887777766 34
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 047067 194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL 257 (566)
Q Consensus 194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (566)
+..-=.-+.+.-...|+.+..... +.+..+..+......+ +..+..-|..+|.+..
T Consensus 428 n~~ESlEl~r~vL~q~r~~llekW---l~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 428 NKYESLELCRPVLQQGRKQLLEKW---LKEDKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHH---HHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred chHHhhHHhHHHHhccHHHHHHHH---HhcCCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 443333344444445554433322 2233445544443322 3345556666665543
No 325
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.73 E-value=2.7e+02 Score=26.60 Aligned_cols=52 Identities=8% Similarity=-0.006 Sum_probs=23.7
Q ss_pred hhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067 341 LGRAGLLDRALKFIREMP-I-EPTAAVWGALLGACRMHKNVELGAYAAERIFELD 393 (566)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 393 (566)
.++.|..+-...+++.-. . ..+...++. +......|+.+....+++.-...+
T Consensus 252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVD 305 (437)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred HHHCCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCC
Confidence 345666666555555431 0 112111222 233345677766655555433333
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.54 E-value=1.7e+02 Score=23.40 Aligned_cols=42 Identities=5% Similarity=-0.027 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 047067 62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS 103 (566)
Q Consensus 62 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 103 (566)
..++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 71 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFL 71 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 334444444444445555555554444333444443333333
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.68 E-value=2.3e+02 Score=23.83 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC
Q 047067 34 LNAYAKCGCLDEARKLFDEMP----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN 92 (566)
Q Consensus 34 i~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 92 (566)
+...++.|+++....+++.-+ .+|..-++.|..+ +..|+. ++++.+.+.|..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~----~~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHT----EIVEFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCSC
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcH----HHHHHHHHhCCCCC
Confidence 444556777777777776533 2233333333332 334443 34444455555444
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.65 E-value=2.7e+02 Score=22.18 Aligned_cols=38 Identities=5% Similarity=-0.063 Sum_probs=15.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067 167 IAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204 (566)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 204 (566)
+..+...+.+-.|.++++.+.+.+...+..|.--.|..
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 70 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNF 70 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHH
Confidence 33333333444444444444443333333333333333
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.90 E-value=2e+02 Score=22.41 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHHHHhCC-CccHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 047067 62 TALISGYSQND-QPENAIILFSQMLRLGLKPNQFTLSSVLKA 102 (566)
Q Consensus 62 ~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 102 (566)
..++..+...+ ..-.|.++++.+.+.+...+..|....|+.
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 62 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQ 62 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 33444444443 444555555555555444444444333333
No 330
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=23.88 E-value=4.8e+02 Score=24.87 Aligned_cols=280 Identities=9% Similarity=0.014 Sum_probs=145.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--------CChHHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHHHH----
Q 047067 132 GSSLLDMYARFDQMDDAWFLFTALES--------KNEVSWNALIAGHARKSE-GEKALRTFSEMLREGFEPTHFSY---- 198 (566)
Q Consensus 132 ~~~li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~---- 198 (566)
...|...|.+.|+.++..+++..... +....-..++..+....+ .+.-.++..+..+.. +-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45577778888888888887776543 123344556666655332 233333333333211 0111223
Q ss_pred --HHHHHHHhccCChHHHHHHHHHHHHhCCC-----CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCChhHHH
Q 047067 199 --SSVFTALASTGSLEQGKWVHAHVIKSGGQ-----LVAFVGNTLVDMYAKSGSIEDAEKVFNRLL------KRDVVSWN 265 (566)
Q Consensus 199 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~ 265 (566)
..+...+...|++.+|..++..+.+.--. .-..++-.-+.+|...+++.++...+.... .+++..-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 14566777778888887777777653111 112344555667777788777777775541 12222211
Q ss_pred H----HHHHHH-HcCCHHHHHHHHHHHHHcC---CCC---CHHHHHHHHHHHHccCCHHHHHHHH-Hh-HHhhCCCccHH
Q 047067 266 S----MLTGCA-QHGLGKATVRWFEKMLRNG---IAP---NQVTFLCVLTACSHAGLLDEGQGYF-AL-MKKHGVEPEEA 332 (566)
Q Consensus 266 ~----li~~~~-~~g~~~~A~~~~~~m~~~g---~~p---~~~t~~~ll~a~~~~g~~~~a~~~~-~~-~~~~~~~p~~~ 332 (566)
. -...+. ..+++..|...|-+..+.= ..| +...|..|..... ++..+-..++ .. .... ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHH
Confidence 1 122345 6788888887777664310 112 1223333322222 2222222333 12 1222 356666
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067 333 HYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAV---WGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY 407 (566)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 407 (566)
.+..++.+| +.+++.+...+++.. .+..|... +..|..... ...+.++ ..|-.......++..+
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHHHH
Confidence 666666654 456777777777765 23445542 111211111 1112222 3466666777777666
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 047067 408 ASAGRLNDAARARKMMKESGV 428 (566)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~g~ 428 (566)
.- ..+++....-+|...|.
T Consensus 327 ~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTS
T ss_pred Cc--CHHHHHHHHHHHHHCCC
Confidence 53 67899999999988765
No 331
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.37 E-value=93 Score=27.24 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=28.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHh--ccCChHHHHHHHHHH
Q 047067 169 GHARKSEGEKALRTFSEMLREGFEPTHFS-------YSSVFTALA--STGSLEQGKWVHAHV 221 (566)
Q Consensus 169 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 221 (566)
..++.|+.+....+++.+...|..++... .+.+..|.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34556777777667776666655444222 233333332 456666666665543
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.20 E-value=1.4e+02 Score=24.31 Aligned_cols=44 Identities=9% Similarity=-0.057 Sum_probs=18.4
Q ss_pred HHHHccCCCchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCC
Q 047067 100 LKASGAGATDDKFGRQVHAFCLKY--GYDWNVYVGSSLLDMYARFDQ 144 (566)
Q Consensus 100 l~a~~~~~~~~~~~~~i~~~~~~~--g~~~~~~~~~~li~~y~~~g~ 144 (566)
+..+...+..- .+.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 39 L~~L~~~~~h~-sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 39 LKTLYHSDTHY-TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHSCCSCB-CHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33333333333 455555555444 333333333333344444443
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.06 E-value=2.1e+02 Score=20.47 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHH
Q 047067 142 FDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179 (566)
Q Consensus 142 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 179 (566)
....+.|.++++.++.++..+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45678899999999888888899888888887764444
No 334
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.42 E-value=2.3e+02 Score=23.99 Aligned_cols=19 Identities=26% Similarity=0.081 Sum_probs=12.3
Q ss_pred HHHHHhcCChhHHHHHHcc
Q 047067 34 LNAYAKCGCLDEARKLFDE 52 (566)
Q Consensus 34 i~~~~~~g~~~~A~~~f~~ 52 (566)
+...++.|+.+....+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3444567777777777765
No 335
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.97 E-value=3.6e+02 Score=22.78 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=33.3
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067 267 MLTGC---AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310 (566)
Q Consensus 267 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 310 (566)
+|+++ .+..+.+.|+-++-+|++.|..|..+.-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45554 457899999999999999998887776666666665544
No 336
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.74 E-value=1.7e+02 Score=27.13 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCC
Q 047067 97 SSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS--SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKS 174 (566)
Q Consensus 97 ~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~--~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 174 (566)
.+.|...+..|+.+ +.+.+++.|..++..... +.+...+..|+.+-+..+++.-...+...-.+-+...+..|
T Consensus 21 ~t~L~~Aa~~g~~~-----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 21 MEKIHVAARKGQTD-----EVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHTCHH-----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHH-----HHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcC
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHH-------------------HHHHHHHhccC--ChHHHHHHHHHHHHhCCCCcHhHH
Q 047067 175 EGEKALRTFSEMLREGFEPTHFSY-------------------SSVFTALASTG--SLEQGKWVHAHVIKSGGQLVAFVG 233 (566)
Q Consensus 175 ~~~~A~~~~~~m~~~g~~pd~~t~-------------------~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 233 (566)
+.+-+..+++.....|..|+.... .+.+...+..| +.+-++.+++. ...+.......
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~g 173 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKAD 173 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTTS
T ss_pred CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCCC
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh--------cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067 234 NTLVDMYAKSGSIEDAEKVFNR--------LLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN 295 (566)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (566)
.+.+...+..|+.+-+..+++. +...|..-++.|..+..... .++.+.+++.|..++
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~ 238 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVN 238 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCC
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.52 E-value=1.8e+02 Score=23.60 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhh--CCCccHHHHHHHHHHhhhcCCHH
Q 047067 278 KATVRWFEK-MLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH--GVEPEEAHYVTFVDLLGRAGLLD 348 (566)
Q Consensus 278 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~ 348 (566)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544443 455777776543 44556666666777888888777766 54555555445567888888764
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.25 E-value=1.8e+02 Score=22.46 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCch
Q 047067 63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD 110 (566)
Q Consensus 63 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 110 (566)
.++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 456666666667788888888887766666666666666666555443
No 339
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.98 E-value=1.3e+02 Score=23.08 Aligned_cols=43 Identities=2% Similarity=-0.077 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 047067 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS 224 (566)
Q Consensus 182 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 224 (566)
+|+.+....+.|+...-..-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555655556555444444445556778888888888777653
No 340
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.83 E-value=4.9e+02 Score=23.85 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 047067 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQ 227 (566)
Q Consensus 182 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (566)
+++.+.+.|+.|...++..++..+++.=.++.+..+++.+...|..
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 3444455556665555555555555555566666666666555533
No 341
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.72 E-value=4e+02 Score=22.78 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=34.1
Q ss_pred HHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067 266 SMLTGC---AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG 310 (566)
Q Consensus 266 ~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 310 (566)
-+|+++ .+..+.+.|+-++-+|++.|..|..+.-..++.+....|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 355555 457899999999999999998887777666666665544
Done!