BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047071
(902 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVI 874
R+L G L + +LKE ++ L N+L +LP + L L L N QL+ +
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL 124
Query: 875 PMSFFQFMTSLKVLNLSKTRINCLP 899
P F +T+L LNL+ ++ LP
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLP 149
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 837 QAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894
Q ++ L N L +LP + L+ L+L N +L+ +P F +TSL LNLS +
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 895 INCLPN 900
+ LPN
Sbjct: 88 LQSLPN 93
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVI 874
R+L G L + +LKE ++ L N+L +LP + L L L N QL+ +
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL 124
Query: 875 PMSFFQFMTSLKVLNLSKTRINCLP 899
P F +T+L L L ++ LP
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLP 149
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 837 QAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896
Q K +++ N+L TLP+ L VL + RN QLK +P F +TSL+ + L +
Sbjct: 452 QLKELYISRNKLMTLPDASLLPMLLVLKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Query: 897 C 897
C
Sbjct: 511 C 511
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 832 LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLN 889
KE + + +++ DN+L LP L+ L L RN QLK +P F +T L L+
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLS 139
Query: 890 LSKTRINCLP 899
L + LP
Sbjct: 140 LGYNELQSLP 149
>pdb|3A0K|A Chain A, Crystal Structure Of An Antiflamatory Legume Lectin From
Cymbosema Roseum Seeds
pdb|3A0K|C Chain C, Crystal Structure Of An Antiflamatory Legume Lectin From
Cymbosema Roseum Seeds
pdb|3A0K|E Chain E, Crystal Structure Of An Antiflamatory Legume Lectin From
Cymbosema Roseum Seeds
pdb|3A0K|G Chain G, Crystal Structure Of An Antiflamatory Legume Lectin From
Cymbosema Roseum Seeds
Length = 237
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 659 EENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQL 696
E N +L W TSKL + SIA+A L FSF+Q
Sbjct: 102 ETNTILSWSFTSKLKTNSIADANA------LHFSFNQF 133
>pdb|2JEC|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora
Lectin Mutant E123a-H131n-K132q Complexed With
5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
pdb|2JEC|B Chain B, Crystal Structure Of Recombinant Dioclea Grandiflora
Lectin Mutant E123a-H131n-K132q Complexed With
5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
pdb|2JEC|C Chain C, Crystal Structure Of Recombinant Dioclea Grandiflora
Lectin Mutant E123a-H131n-K132q Complexed With
5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
pdb|2JEC|D Chain D, Crystal Structure Of Recombinant Dioclea Grandiflora
Lectin Mutant E123a-H131n-K132q Complexed With
5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose
Length = 239
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 659 EENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQL 696
E N +L W TSKL + SIA+A L FSF+Q
Sbjct: 104 ETNTILSWSFTSKLKTNSIADANS------LHFSFNQF 135
>pdb|1H9P|A Chain A, Crystal Structure Of Dioclea Guianensis Seed Lectin
Length = 237
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 659 EENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQL 696
E N +L W TSKL + SIA+A L FSF+Q
Sbjct: 102 ETNTILSWSFTSKLKTNSIADANS------LHFSFNQF 133
>pdb|2W91|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D.
pdb|2W92|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D, In Complex With
Nag-Thiazoline
Length = 653
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 565 WEQINLQEVGIPDPSSENVGKIVVASRTVGACLEMDASKLIEVETVS 611
WE++ E G + + N G +V+ASR G + ASK +V+ +S
Sbjct: 17 WEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALS 63
>pdb|3V8B|A Chain A, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
pdb|3V8B|B Chain B, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
pdb|3V8B|C Chain C, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
pdb|3V8B|D Chain D, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
Length = 283
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 729 EGVIAGSLGDARKRGQDIIDILVGA---SLLQVTEAGDSIKMHDLIRDLAL 776
+GV G+LG R +++ D +VGA ++ + D ++ + +RDL L
Sbjct: 51 DGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQXRNAVRDLVL 101
>pdb|1DGL|A Chain A, Lectin From Dioclea Grandiflora Complexed To Trimannoside
pdb|1DGL|B Chain B, Lectin From Dioclea Grandiflora Complexed To Trimannoside
Length = 237
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 659 EENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQL 696
E N +L W TSKL + SIA+A L FSF Q
Sbjct: 102 ETNTILSWSFTSKLKTNSIADANS------LHFSFHQF 133
>pdb|1MI8|A Chain A, 2.0 Angstrom Crystal Structure Of A Dnab Intein From
Synechocystis Sp. Pcc 6803
Length = 158
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 752 GASLLQVTEAGDSIKMHDLIRDLALGILSVSEDSQILLSA-YSRLIETXXXX----XXXX 806
G SL+ + G + + DL+ + I +++E + L SA SR+ T
Sbjct: 6 GDSLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRL 65
Query: 807 XRTLKVPEGHRFLLRAGAGLTEPPSLKE 834
RT+K HRFL G + SLKE
Sbjct: 66 GRTIKATANHRFLTIDGWKRLDELSLKE 93
>pdb|1XM7|A Chain A, The Crystal Structure Of The Protein Of Unknown Function
Aq665 From Aquifex Aeolicus
pdb|1XM7|B Chain B, The Crystal Structure Of The Protein Of Unknown Function
Aq665 From Aquifex Aeolicus
Length = 195
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 2 EFTWS-------VLIWPAVSLFRKIVPSKRHGRDVELLIQKYEGLYDMRDFVKEEKIKEL 54
+FTW + IW A+ RKI+ H +D E L + ++ +YD + E K K +
Sbjct: 52 DFTWHFNDKNEYLRIWKALP-GRKILVMGNHDKDKESLKEYFDEIYDFYKII-EHKGKRI 109
Query: 55 MLGSIQTKD 63
+L KD
Sbjct: 110 LLSHYPAKD 118
>pdb|3GDB|A Chain A, Crystal Structure Of Spr0440 Glycoside Hydrolase Domain,
Endo-D From Streptococcus Pneumoniae R6
Length = 937
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 565 WEQINLQEVGIPDPSSENVGKIVVASRTVGACLEMDASKLIEVETVS 611
WE++ E G + + N G +V+ASR G + ASK +V+ +S
Sbjct: 168 WEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALS 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,812,244
Number of Sequences: 62578
Number of extensions: 907732
Number of successful extensions: 2373
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2365
Number of HSP's gapped (non-prelim): 19
length of query: 902
length of database: 14,973,337
effective HSP length: 108
effective length of query: 794
effective length of database: 8,214,913
effective search space: 6522640922
effective search space used: 6522640922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)