Query 047071
Match_columns 902
No_of_seqs 485 out of 2986
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-65 2.3E-70 627.8 25.7 547 344-898 40-634 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.1E-49 4.5E-54 505.3 26.8 505 368-902 101-701 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8E-42 1.7E-46 372.4 16.6 274 460-734 1-284 (287)
4 PRK04841 transcriptional regul 99.4 1.5E-11 3.2E-16 155.1 20.3 290 456-780 15-333 (903)
5 PRK00411 cdc6 cell division co 99.1 6.5E-09 1.4E-13 119.1 22.2 295 450-759 25-358 (394)
6 PF01637 Arch_ATPase: Archaeal 99.1 5E-10 1.1E-14 117.4 10.6 193 458-652 2-233 (234)
7 COG2909 MalT ATP-dependent tra 99.1 1.9E-09 4E-14 128.7 16.1 291 456-780 20-339 (894)
8 TIGR02928 orc1/cdc6 family rep 99.0 2.8E-08 6.1E-13 112.6 22.0 296 450-759 10-350 (365)
9 TIGR00635 ruvB Holliday juncti 99.0 1.2E-08 2.5E-13 113.0 17.9 272 455-760 4-290 (305)
10 PRK00080 ruvB Holliday junctio 98.9 1.6E-08 3.5E-13 113.3 16.7 275 453-760 23-311 (328)
11 TIGR03015 pepcterm_ATPase puta 98.9 2.4E-08 5.2E-13 108.2 17.4 180 474-657 41-242 (269)
12 PF05729 NACHT: NACHT domain 98.9 9.2E-09 2E-13 102.2 9.7 141 477-623 1-163 (166)
13 COG3899 Predicted ATPase [Gene 98.5 1.4E-06 3E-11 108.9 15.1 307 456-780 1-387 (849)
14 PRK06893 DNA replication initi 98.4 5.9E-07 1.3E-11 95.8 9.0 150 475-652 38-202 (229)
15 PRK13342 recombination factor 98.4 1.2E-06 2.7E-11 101.4 12.0 173 454-653 11-196 (413)
16 COG2256 MGS1 ATPase related to 98.4 1.7E-06 3.8E-11 96.5 11.7 155 467-648 39-207 (436)
17 TIGR03420 DnaA_homol_Hda DnaA 98.4 9.8E-07 2.1E-11 93.1 9.3 168 459-654 21-202 (226)
18 PF13173 AAA_14: AAA domain 98.4 6.3E-07 1.4E-11 86.6 7.0 120 476-615 2-127 (128)
19 cd00009 AAA The AAA+ (ATPases 98.4 3E-06 6.5E-11 81.1 11.2 123 458-594 1-131 (151)
20 PRK12402 replication factor C 98.4 3.2E-06 7E-11 94.6 12.8 194 455-650 15-223 (337)
21 PF13401 AAA_22: AAA domain; P 98.3 1E-06 2.2E-11 84.6 7.2 116 475-592 3-125 (131)
22 PRK07003 DNA polymerase III su 98.2 1.3E-05 2.7E-10 96.8 15.0 193 452-652 13-220 (830)
23 COG1474 CDC6 Cdc6-related prot 98.2 4.1E-05 8.9E-10 87.1 18.0 175 450-625 12-205 (366)
24 PRK00440 rfc replication facto 98.2 1.4E-05 3E-10 88.8 13.4 179 455-650 17-200 (319)
25 PLN03025 replication factor C 98.2 1.1E-05 2.3E-10 90.4 12.3 179 454-648 12-195 (319)
26 COG3903 Predicted ATPase [Gene 98.2 2.9E-06 6.2E-11 95.3 7.2 289 475-780 13-315 (414)
27 PRK05564 DNA polymerase III su 98.2 2.5E-05 5.5E-10 87.1 14.8 175 455-651 4-188 (313)
28 PRK14963 DNA polymerase III su 98.2 2.5E-06 5.3E-11 100.9 7.0 193 453-650 12-214 (504)
29 PTZ00112 origin recognition co 98.1 8.6E-06 1.9E-10 98.7 10.4 173 450-625 750-951 (1164)
30 PF13191 AAA_16: AAA ATPase do 98.1 5.3E-06 1.1E-10 84.2 7.6 47 457-503 2-51 (185)
31 PF13855 LRR_8: Leucine rich r 98.1 2.4E-06 5.3E-11 71.5 4.0 59 836-895 1-61 (61)
32 TIGR02903 spore_lon_C ATP-depe 98.1 2.9E-05 6.2E-10 94.2 14.3 202 454-656 153-398 (615)
33 PRK14961 DNA polymerase III su 98.1 3E-05 6.4E-10 88.4 13.5 188 453-649 14-216 (363)
34 KOG2028 ATPase related to the 98.1 1.8E-05 4E-10 86.9 10.6 134 467-622 153-293 (554)
35 PRK04195 replication factor C 98.1 2.4E-05 5.2E-10 92.5 12.5 175 454-651 13-200 (482)
36 cd01128 rho_factor Transcripti 98.1 4.7E-06 1E-10 89.9 5.8 92 475-567 15-115 (249)
37 PRK14949 DNA polymerase III su 98.1 2.7E-05 5.8E-10 95.7 12.9 189 453-651 14-218 (944)
38 PTZ00202 tuzin; Provisional 98.0 2.5E-05 5.4E-10 88.8 11.5 183 428-621 232-432 (550)
39 TIGR01242 26Sp45 26S proteasom 98.0 5.4E-05 1.2E-09 86.3 14.5 173 452-647 119-328 (364)
40 PRK12323 DNA polymerase III su 98.0 3E-05 6.5E-10 92.5 11.8 197 452-651 13-223 (700)
41 PRK09087 hypothetical protein; 98.0 3.5E-05 7.7E-10 82.1 10.8 139 475-652 43-194 (226)
42 PRK08084 DNA replication initi 98.0 3.5E-05 7.5E-10 82.6 10.5 161 463-651 32-207 (235)
43 PRK14962 DNA polymerase III su 97.9 8.2E-05 1.8E-09 87.4 13.8 194 453-655 12-221 (472)
44 PRK13341 recombination factor 97.9 4.2E-05 9.1E-10 93.9 11.7 166 455-647 28-211 (725)
45 PRK14960 DNA polymerase III su 97.9 6E-05 1.3E-09 90.3 12.6 190 453-650 13-216 (702)
46 PRK14957 DNA polymerase III su 97.9 6E-05 1.3E-09 89.6 12.4 182 453-653 14-221 (546)
47 PRK08727 hypothetical protein; 97.9 2.8E-05 6.1E-10 83.2 8.8 164 459-650 24-201 (233)
48 PRK14956 DNA polymerase III su 97.9 5.2E-05 1.1E-09 88.3 11.1 187 453-648 16-217 (484)
49 TIGR02397 dnaX_nterm DNA polym 97.9 0.00013 2.9E-09 82.3 13.5 179 454-652 13-217 (355)
50 PRK06645 DNA polymerase III su 97.9 0.00013 2.8E-09 86.2 13.5 192 453-649 19-225 (507)
51 TIGR00678 holB DNA polymerase 97.8 0.00026 5.6E-09 72.9 13.9 158 466-649 3-187 (188)
52 PRK07994 DNA polymerase III su 97.8 0.0001 2.2E-09 89.1 12.4 191 452-651 13-218 (647)
53 PRK14951 DNA polymerase III su 97.8 0.00013 2.8E-09 88.0 13.2 193 453-650 14-222 (618)
54 PRK14955 DNA polymerase III su 97.8 7.1E-05 1.5E-09 86.3 10.7 196 453-650 14-225 (397)
55 PRK09376 rho transcription ter 97.8 2.9E-05 6.3E-10 87.8 6.9 99 467-567 159-268 (416)
56 KOG4658 Apoptotic ATPase [Sign 97.8 1.1E-05 2.3E-10 101.1 3.3 85 817-902 526-614 (889)
57 PRK07471 DNA polymerase III su 97.8 0.00029 6.2E-09 80.4 14.6 193 454-653 18-238 (365)
58 PRK09112 DNA polymerase III su 97.8 0.00027 5.9E-09 80.1 14.2 194 453-653 21-240 (351)
59 PRK14970 DNA polymerase III su 97.8 0.00023 5E-09 81.2 13.7 178 453-648 15-204 (367)
60 PRK08691 DNA polymerase III su 97.8 0.0001 2.2E-09 89.1 10.8 190 453-650 14-217 (709)
61 PF05621 TniB: Bacterial TniB 97.8 0.00021 4.6E-09 78.4 12.0 187 463-649 45-257 (302)
62 PRK14964 DNA polymerase III su 97.8 0.00015 3.3E-09 85.2 11.6 179 453-649 11-213 (491)
63 PRK07940 DNA polymerase III su 97.7 0.00024 5.3E-09 81.6 13.0 184 455-653 5-213 (394)
64 PRK09111 DNA polymerase III su 97.7 0.00022 4.7E-09 86.1 13.0 193 453-651 22-231 (598)
65 PRK05896 DNA polymerase III su 97.7 9.2E-05 2E-09 88.4 9.7 192 453-653 14-221 (605)
66 PRK14958 DNA polymerase III su 97.7 0.00017 3.6E-09 85.6 11.9 180 453-650 14-217 (509)
67 PRK08903 DnaA regulatory inact 97.7 0.00017 3.6E-09 76.6 10.6 167 459-657 23-203 (227)
68 PRK14969 DNA polymerase III su 97.7 0.00016 3.4E-09 86.3 10.8 187 453-648 14-215 (527)
69 PRK14954 DNA polymerase III su 97.7 0.00033 7.2E-09 84.7 13.0 194 453-648 14-223 (620)
70 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.9E-10 60.5 3.1 41 858-900 1-41 (44)
71 PF05496 RuvB_N: Holliday junc 97.7 0.00055 1.2E-08 72.2 12.8 171 453-652 22-220 (233)
72 PLN03210 Resistant to P. syrin 97.6 8.2E-05 1.8E-09 96.9 7.6 74 825-900 646-722 (1153)
73 PRK07764 DNA polymerase III su 97.6 0.00043 9.3E-09 86.3 13.1 187 453-648 13-216 (824)
74 PHA02544 44 clamp loader, smal 97.6 0.00034 7.3E-09 77.9 11.1 146 454-621 20-171 (316)
75 PRK03992 proteasome-activating 97.6 0.0009 2E-08 77.1 14.7 171 453-646 129-336 (389)
76 PRK05642 DNA replication initi 97.6 0.00015 3.2E-09 77.7 7.6 147 477-651 46-206 (234)
77 PRK14950 DNA polymerase III su 97.6 0.00026 5.7E-09 85.6 10.6 192 453-652 14-220 (585)
78 TIGR02639 ClpA ATP-dependent C 97.6 0.00028 6E-09 87.7 11.0 155 454-624 181-359 (731)
79 KOG2227 Pre-initiation complex 97.6 0.0018 4E-08 74.0 16.0 196 452-647 147-362 (529)
80 TIGR00767 rho transcription te 97.5 0.00021 4.6E-09 81.4 8.4 92 475-567 167-267 (415)
81 PRK14971 DNA polymerase III su 97.5 0.00071 1.5E-08 82.1 13.1 177 453-648 15-217 (614)
82 PRK14959 DNA polymerase III su 97.5 0.00052 1.1E-08 82.5 11.7 194 454-656 15-224 (624)
83 PRK14087 dnaA chromosomal repl 97.5 0.00021 4.5E-09 83.8 8.1 164 477-654 142-320 (450)
84 TIGR02881 spore_V_K stage V sp 97.5 0.00036 7.8E-09 75.9 9.4 152 456-625 7-193 (261)
85 CHL00095 clpC Clp protease ATP 97.5 0.00033 7.3E-09 88.0 10.4 154 454-622 178-353 (821)
86 PRK14952 DNA polymerase III su 97.5 0.00079 1.7E-08 81.0 12.8 192 453-653 11-220 (584)
87 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00059 1.3E-08 85.8 12.2 178 453-646 185-389 (852)
88 TIGR00362 DnaA chromosomal rep 97.5 0.00075 1.6E-08 78.1 12.3 158 477-651 137-308 (405)
89 PF00308 Bac_DnaA: Bacterial d 97.5 0.00022 4.9E-09 75.6 7.3 156 476-648 34-203 (219)
90 PRK06305 DNA polymerase III su 97.5 0.00099 2.1E-08 78.1 13.2 184 453-648 15-217 (451)
91 PRK08451 DNA polymerase III su 97.4 0.0016 3.6E-08 77.3 13.9 191 453-651 12-216 (535)
92 KOG0617 Ras suppressor protein 97.4 3.7E-05 8E-10 76.9 -0.2 75 825-901 44-122 (264)
93 PTZ00454 26S protease regulato 97.4 0.003 6.5E-08 72.9 15.0 175 451-647 141-351 (398)
94 PF14580 LRR_9: Leucine-rich r 97.4 0.00013 2.9E-09 74.5 3.6 73 824-897 29-102 (175)
95 PRK00149 dnaA chromosomal repl 97.4 0.0011 2.4E-08 77.9 11.7 157 477-650 149-319 (450)
96 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0012 2.6E-08 83.3 12.3 156 454-625 172-351 (852)
97 COG1373 Predicted ATPase (AAA+ 97.3 0.0012 2.6E-08 76.3 11.2 136 460-619 22-163 (398)
98 KOG0444 Cytoskeletal regulator 97.3 6.6E-05 1.4E-09 87.2 0.8 84 815-900 104-195 (1255)
99 PRK14088 dnaA chromosomal repl 97.3 0.00078 1.7E-08 78.8 9.6 157 477-650 131-302 (440)
100 PRK14948 DNA polymerase III su 97.3 0.0021 4.5E-08 78.2 13.4 191 454-651 15-220 (620)
101 PF14516 AAA_35: AAA-like doma 97.3 0.0045 9.7E-08 69.8 15.3 195 458-660 14-246 (331)
102 PRK14953 DNA polymerase III su 97.3 0.0025 5.3E-08 75.5 13.6 187 453-651 14-218 (486)
103 PRK06620 hypothetical protein; 97.3 0.00054 1.2E-08 72.4 7.2 131 477-648 45-184 (214)
104 PRK07133 DNA polymerase III su 97.3 0.0019 4E-08 79.0 12.7 183 454-648 17-214 (725)
105 KOG0989 Replication factor C, 97.3 0.0011 2.3E-08 72.3 9.3 181 455-647 36-224 (346)
106 KOG0472 Leucine-rich repeat pr 97.3 4.3E-05 9.4E-10 85.1 -1.4 76 824-901 216-293 (565)
107 PRK10865 protein disaggregatio 97.2 0.0023 5E-08 80.7 13.4 154 454-623 177-354 (857)
108 smart00382 AAA ATPases associa 97.2 0.0009 2E-08 63.1 7.6 88 477-568 3-91 (148)
109 TIGR03689 pup_AAA proteasome A 97.2 0.0021 4.5E-08 76.1 11.6 158 453-624 180-379 (512)
110 TIGR02880 cbbX_cfxQ probable R 97.2 0.0019 4.1E-08 71.3 10.5 132 478-625 60-210 (284)
111 KOG2543 Origin recognition com 97.2 0.0023 4.9E-08 71.6 10.8 157 457-621 8-191 (438)
112 PRK11331 5-methylcytosine-spec 97.2 0.0019 4.1E-08 74.8 10.6 107 455-567 175-284 (459)
113 PLN03150 hypothetical protein; 97.2 0.00044 9.5E-09 84.4 5.7 70 831-901 437-509 (623)
114 KOG0444 Cytoskeletal regulator 97.1 0.00015 3.2E-09 84.3 1.0 73 829-902 95-169 (1255)
115 PRK12422 chromosomal replicati 97.1 0.0009 2E-08 78.3 7.4 151 477-646 142-306 (445)
116 KOG0617 Ras suppressor protein 97.1 8.7E-05 1.9E-09 74.3 -1.0 75 826-902 23-98 (264)
117 PRK11034 clpA ATP-dependent Cl 97.1 0.00095 2.1E-08 82.6 7.8 155 454-623 185-362 (758)
118 PRK14086 dnaA chromosomal repl 97.1 0.00089 1.9E-08 80.2 7.2 156 477-649 315-484 (617)
119 PRK06647 DNA polymerase III su 97.1 0.0057 1.2E-07 73.6 14.1 189 453-650 14-217 (563)
120 PRK14965 DNA polymerase III su 97.1 0.0027 5.9E-08 76.7 11.3 192 453-653 14-221 (576)
121 PF00004 AAA: ATPase family as 97.1 0.0011 2.4E-08 63.1 6.4 22 479-500 1-22 (132)
122 TIGR01241 FtsH_fam ATP-depende 97.0 0.0079 1.7E-07 71.6 14.6 172 454-647 54-260 (495)
123 COG0466 Lon ATP-dependent Lon 97.0 0.0084 1.8E-07 71.9 14.4 153 458-625 326-510 (782)
124 PRK05563 DNA polymerase III su 97.0 0.0081 1.8E-07 72.4 14.3 189 453-650 14-217 (559)
125 CHL00181 cbbX CbbX; Provisiona 97.0 0.0051 1.1E-07 68.0 11.2 132 478-625 61-211 (287)
126 PTZ00361 26 proteosome regulat 96.9 0.0015 3.2E-08 76.1 7.2 172 454-647 182-389 (438)
127 PF13855 LRR_8: Leucine rich r 96.9 0.00048 1E-08 57.6 2.3 43 858-901 1-43 (61)
128 PRK07399 DNA polymerase III su 96.9 0.012 2.7E-07 65.8 13.5 193 455-652 4-220 (314)
129 PLN00113 leucine-rich repeat r 96.8 0.0014 3E-08 84.0 6.1 82 819-901 145-231 (968)
130 TIGR00602 rad24 checkpoint pro 96.8 0.0051 1.1E-07 74.6 10.5 47 454-500 83-134 (637)
131 CHL00176 ftsH cell division pr 96.8 0.02 4.4E-07 69.9 15.5 170 454-645 182-386 (638)
132 PRK05707 DNA polymerase III su 96.8 0.0098 2.1E-07 67.0 11.8 95 554-653 105-203 (328)
133 PRK08116 hypothetical protein; 96.8 0.0016 3.5E-08 71.2 5.4 101 477-592 115-220 (268)
134 PRK10536 hypothetical protein; 96.8 0.0035 7.6E-08 67.7 7.6 60 451-512 51-110 (262)
135 KOG0472 Leucine-rich repeat pr 96.7 0.00089 1.9E-08 75.0 2.8 83 815-900 436-544 (565)
136 PRK08118 topology modulation p 96.7 0.0011 2.3E-08 67.4 3.2 35 477-511 2-37 (167)
137 COG2255 RuvB Holliday junction 96.7 0.016 3.6E-07 62.8 12.1 169 454-651 25-221 (332)
138 PF10443 RNA12: RNA12 protein; 96.7 0.041 8.9E-07 63.2 15.9 195 460-664 1-289 (431)
139 TIGR00763 lon ATP-dependent pr 96.7 0.017 3.8E-07 72.4 14.3 44 457-500 322-371 (775)
140 PLN00113 leucine-rich repeat r 96.7 0.0018 3.9E-08 83.0 5.6 85 816-901 166-255 (968)
141 CHL00195 ycf46 Ycf46; Provisio 96.7 0.025 5.5E-07 66.9 14.6 174 454-647 227-429 (489)
142 PRK08769 DNA polymerase III su 96.6 0.027 5.8E-07 63.2 13.5 179 462-654 11-209 (319)
143 PF14580 LRR_9: Leucine-rich r 96.5 0.001 2.2E-08 68.2 1.6 72 826-900 9-81 (175)
144 KOG0733 Nuclear AAA ATPase (VC 96.5 0.036 7.9E-07 65.4 13.7 155 451-625 186-376 (802)
145 PF05673 DUF815: Protein of un 96.5 0.017 3.7E-07 61.9 10.3 49 452-500 24-76 (249)
146 PRK12377 putative replication 96.4 0.01 2.2E-07 64.2 8.7 74 475-565 100-173 (248)
147 COG1222 RPT1 ATP-dependent 26S 96.4 0.083 1.8E-06 59.2 15.7 169 456-647 152-357 (406)
148 COG0593 DnaA ATPase involved i 96.4 0.0099 2.2E-07 68.2 8.7 129 476-625 113-259 (408)
149 KOG0618 Serine/threonine phosp 96.4 0.00085 1.8E-08 81.8 0.0 75 824-900 55-131 (1081)
150 PF04665 Pox_A32: Poxvirus A32 96.4 0.004 8.7E-08 66.8 5.1 36 477-514 14-49 (241)
151 PRK08058 DNA polymerase III su 96.4 0.036 7.8E-07 62.5 13.0 156 457-621 7-180 (329)
152 KOG2004 Mitochondrial ATP-depe 96.4 0.03 6.6E-07 67.1 12.4 153 457-624 413-597 (906)
153 PRK10787 DNA-binding ATP-depen 96.3 0.03 6.5E-07 70.0 13.2 156 457-624 324-507 (784)
154 PRK08181 transposase; Validate 96.3 0.0025 5.4E-08 69.7 3.1 77 469-565 101-177 (269)
155 TIGR01243 CDC48 AAA family ATP 96.2 0.036 7.7E-07 69.2 13.1 174 452-647 175-381 (733)
156 cd01120 RecA-like_NTPases RecA 96.2 0.019 4E-07 56.3 8.5 40 478-519 1-40 (165)
157 PF12799 LRR_4: Leucine Rich r 96.2 0.0037 8.1E-08 49.1 2.7 40 836-876 1-41 (44)
158 PRK15386 type III secretion pr 96.2 0.0043 9.3E-08 71.2 4.0 72 820-901 58-133 (426)
159 PHA00729 NTP-binding motif con 96.1 0.011 2.4E-07 62.8 6.8 34 467-500 8-41 (226)
160 KOG0991 Replication factor C, 96.1 0.0077 1.7E-07 63.4 5.5 65 453-517 25-89 (333)
161 PRK15370 E3 ubiquitin-protein 96.1 0.0078 1.7E-07 74.7 6.4 59 837-900 242-300 (754)
162 PRK07261 topology modulation p 96.1 0.013 2.7E-07 59.8 6.7 34 478-511 2-36 (171)
163 COG3267 ExeA Type II secretory 96.0 0.17 3.7E-06 54.5 15.0 175 474-654 49-246 (269)
164 PRK15370 E3 ubiquitin-protein 96.0 0.0095 2.1E-07 74.0 6.6 82 815-902 200-281 (754)
165 PF02562 PhoH: PhoH-like prote 96.0 0.021 4.5E-07 60.0 8.1 126 461-595 6-158 (205)
166 TIGR02640 gas_vesic_GvpN gas v 96.0 0.1 2.2E-06 56.9 13.8 56 462-524 9-64 (262)
167 TIGR01243 CDC48 AAA family ATP 96.0 0.083 1.8E-06 66.0 14.8 171 454-647 452-657 (733)
168 COG2812 DnaX DNA polymerase II 96.0 0.046 9.9E-07 64.7 11.6 187 453-648 14-215 (515)
169 PF00448 SRP54: SRP54-type pro 96.0 0.0084 1.8E-07 62.6 4.9 87 476-564 1-92 (196)
170 TIGR02902 spore_lonB ATP-depen 96.0 0.04 8.6E-07 66.2 11.3 46 454-499 64-109 (531)
171 PRK06871 DNA polymerase III su 96.0 0.12 2.5E-06 58.3 14.2 174 463-650 10-200 (325)
172 PF13177 DNA_pol3_delta2: DNA 96.0 0.041 9E-07 55.6 9.7 136 459-611 1-162 (162)
173 PRK06526 transposase; Provisio 95.9 0.0059 1.3E-07 66.3 3.5 25 476-500 98-122 (254)
174 TIGR02237 recomb_radB DNA repa 95.8 0.019 4E-07 60.0 6.8 47 476-525 12-58 (209)
175 PRK09361 radB DNA repair and r 95.8 0.024 5.2E-07 60.0 7.7 46 475-523 22-67 (225)
176 PRK09183 transposase/IS protei 95.8 0.01 2.2E-07 64.7 4.9 24 477-500 103-126 (259)
177 PRK12608 transcription termina 95.8 0.029 6.3E-07 63.8 8.7 102 465-567 121-232 (380)
178 PRK06090 DNA polymerase III su 95.8 0.15 3.2E-06 57.3 14.1 172 463-653 11-201 (319)
179 COG0470 HolB ATPase involved i 95.8 0.049 1.1E-06 60.5 10.3 138 457-610 3-168 (325)
180 cd01393 recA_like RecA is a b 95.7 0.046 9.9E-07 57.7 9.4 88 475-565 18-124 (226)
181 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.02 4.4E-07 60.8 6.7 50 475-524 18-71 (235)
182 KOG2228 Origin recognition com 95.7 0.069 1.5E-06 59.3 10.5 165 456-623 25-219 (408)
183 PF13207 AAA_17: AAA domain; P 95.7 0.0072 1.6E-07 57.1 2.6 23 478-500 1-23 (121)
184 KOG2035 Replication factor C, 95.6 0.045 9.7E-07 59.2 8.7 226 456-694 14-280 (351)
185 PF01695 IstB_IS21: IstB-like 95.6 0.0036 7.7E-08 64.3 0.3 73 476-566 47-119 (178)
186 COG1484 DnaC DNA replication p 95.5 0.031 6.8E-07 60.7 7.4 91 459-566 87-178 (254)
187 TIGR03499 FlhF flagellar biosy 95.5 0.038 8.3E-07 61.0 8.1 88 475-564 193-281 (282)
188 KOG1514 Origin recognition com 95.5 0.21 4.5E-06 60.2 14.5 166 455-625 396-591 (767)
189 TIGR02639 ClpA ATP-dependent C 95.5 0.036 7.9E-07 69.1 8.8 45 456-500 455-508 (731)
190 PRK06964 DNA polymerase III su 95.4 0.3 6.5E-06 55.4 14.9 91 554-653 131-225 (342)
191 PF07728 AAA_5: AAA domain (dy 95.4 0.0093 2E-07 58.0 2.6 75 479-566 2-76 (139)
192 KOG0731 AAA+-type ATPase conta 95.4 0.14 3.1E-06 62.7 12.9 175 453-649 309-520 (774)
193 PRK11889 flhF flagellar biosyn 95.4 0.075 1.6E-06 60.9 9.8 89 475-565 240-330 (436)
194 PLN03150 hypothetical protein; 95.4 0.015 3.3E-07 71.1 4.8 64 837-901 419-485 (623)
195 cd01133 F1-ATPase_beta F1 ATP 95.3 0.054 1.2E-06 59.3 8.3 90 476-567 69-175 (274)
196 TIGR03346 chaperone_ClpB ATP-d 95.3 0.041 9E-07 69.7 8.6 45 456-500 566-619 (852)
197 PRK04132 replication factor C 95.3 0.11 2.3E-06 65.2 11.9 150 484-650 574-728 (846)
198 cd00983 recA RecA is a bacter 95.3 0.033 7.2E-07 62.5 6.8 84 475-565 54-143 (325)
199 PRK10865 protein disaggregatio 95.3 0.05 1.1E-06 68.9 9.1 45 456-500 569-622 (857)
200 KOG0730 AAA+-type ATPase [Post 95.3 0.12 2.7E-06 61.7 11.6 147 458-625 437-617 (693)
201 PRK07993 DNA polymerase III su 95.3 0.18 3.9E-06 57.1 12.6 174 463-651 10-202 (334)
202 cd01394 radB RadB. The archaea 95.3 0.055 1.2E-06 57.0 8.0 43 475-519 18-60 (218)
203 PRK05541 adenylylsulfate kinas 95.3 0.023 5E-07 57.7 5.0 36 475-512 6-41 (176)
204 TIGR03345 VI_ClpV1 type VI sec 95.2 0.035 7.6E-07 70.2 7.5 45 456-500 567-620 (852)
205 KOG1259 Nischarin, modulator o 95.2 0.0048 1E-07 66.9 -0.4 64 835-900 351-416 (490)
206 KOG4237 Extracellular matrix p 95.1 0.003 6.4E-08 70.8 -2.2 84 816-899 69-156 (498)
207 PRK08939 primosomal protein Dn 95.1 0.037 8.1E-07 61.8 6.4 115 459-591 135-259 (306)
208 PRK06921 hypothetical protein; 95.1 0.03 6.6E-07 61.2 5.6 39 475-514 116-154 (266)
209 TIGR02012 tigrfam_recA protein 95.1 0.042 9E-07 61.6 6.7 85 475-566 54-144 (321)
210 smart00763 AAA_PrkA PrkA AAA d 95.1 0.021 4.6E-07 64.6 4.4 47 456-502 52-104 (361)
211 PRK07952 DNA replication prote 95.1 0.079 1.7E-06 57.3 8.5 88 463-566 84-173 (244)
212 PF08423 Rad51: Rad51; InterP 95.0 0.063 1.4E-06 58.4 7.8 55 476-531 38-96 (256)
213 KOG0618 Serine/threonine phosp 95.0 0.003 6.5E-08 77.2 -2.7 76 818-896 387-465 (1081)
214 TIGR00959 ffh signal recogniti 95.0 0.16 3.5E-06 59.2 11.4 90 475-565 98-192 (428)
215 PRK06696 uridine kinase; Valid 95.0 0.027 5.8E-07 59.8 4.6 41 460-500 3-46 (223)
216 PRK09354 recA recombinase A; P 95.0 0.048 1.1E-06 61.7 6.8 85 475-566 59-149 (349)
217 PRK10733 hflB ATP-dependent me 95.0 0.23 5.1E-06 61.1 13.3 147 477-645 186-355 (644)
218 COG1875 NYN ribonuclease and A 94.9 0.051 1.1E-06 60.9 6.7 129 458-593 227-388 (436)
219 PRK08233 hypothetical protein; 94.9 0.072 1.6E-06 54.0 7.4 25 476-500 3-27 (182)
220 PRK15387 E3 ubiquitin-protein 94.9 0.028 6E-07 69.9 5.0 74 818-897 386-459 (788)
221 COG0542 clpA ATP-binding subun 94.9 0.063 1.4E-06 66.1 7.9 103 456-566 492-604 (786)
222 COG0464 SpoVK ATPases of the A 94.9 0.4 8.7E-06 57.1 14.6 151 475-645 275-445 (494)
223 KOG0734 AAA+-type ATPase conta 94.8 0.069 1.5E-06 62.2 7.6 40 462-501 314-362 (752)
224 PRK00771 signal recognition pa 94.8 0.12 2.5E-06 60.5 9.7 88 475-565 94-185 (437)
225 cd01131 PilT Pilus retraction 94.8 0.034 7.4E-07 58.0 4.7 110 477-595 2-111 (198)
226 KOG0532 Leucine-rich repeat (L 94.8 0.0053 1.2E-07 71.6 -1.4 78 823-902 175-253 (722)
227 PRK15387 E3 ubiquitin-protein 94.8 0.058 1.3E-06 67.1 7.4 77 816-900 224-319 (788)
228 COG2607 Predicted ATPase (AAA+ 94.7 0.13 2.7E-06 54.9 8.6 118 451-593 56-183 (287)
229 PRK14974 cell division protein 94.7 0.15 3.2E-06 57.7 9.8 91 474-566 138-233 (336)
230 CHL00095 clpC Clp protease ATP 94.7 0.13 2.8E-06 65.2 10.3 46 455-500 509-563 (821)
231 PRK06835 DNA replication prote 94.7 0.026 5.7E-07 63.6 3.8 36 477-514 184-219 (329)
232 PRK15386 type III secretion pr 94.6 0.044 9.5E-07 63.1 5.5 62 835-901 51-113 (426)
233 PRK11034 clpA ATP-dependent Cl 94.6 0.086 1.9E-06 65.7 8.4 45 456-500 459-512 (758)
234 cd03115 SRP The signal recogni 94.6 0.094 2E-06 53.1 7.4 87 478-566 2-93 (173)
235 PF07693 KAP_NTPase: KAP famil 94.6 0.25 5.4E-06 55.0 11.5 41 461-501 2-45 (325)
236 PRK14722 flhF flagellar biosyn 94.6 0.097 2.1E-06 59.9 8.1 89 475-565 136-225 (374)
237 PRK12724 flagellar biosynthesi 94.6 0.11 2.3E-06 60.2 8.3 83 476-563 223-307 (432)
238 PRK15455 PrkA family serine pr 94.5 0.04 8.7E-07 65.6 5.0 45 456-500 77-127 (644)
239 PRK10867 signal recognition pa 94.5 0.17 3.8E-06 59.0 10.0 91 474-565 98-193 (433)
240 KOG0531 Protein phosphatase 1, 94.5 0.017 3.7E-07 67.1 1.7 84 814-900 95-179 (414)
241 COG4886 Leucine-rich repeat (L 94.5 0.02 4.2E-07 65.8 2.2 81 819-901 121-204 (394)
242 KOG0532 Leucine-rich repeat (L 94.5 0.0063 1.4E-07 71.0 -1.8 81 819-901 126-207 (722)
243 cd03223 ABCD_peroxisomal_ALDP 94.4 0.24 5.1E-06 50.1 9.7 126 475-607 26-160 (166)
244 KOG0743 AAA+-type ATPase [Post 94.4 0.95 2.1E-05 52.4 15.4 164 462-657 212-413 (457)
245 PRK04296 thymidine kinase; Pro 94.4 0.038 8.1E-07 57.3 4.0 112 477-595 3-118 (190)
246 PRK09270 nucleoside triphospha 94.4 0.12 2.6E-06 55.0 7.9 28 474-501 31-58 (229)
247 TIGR02238 recomb_DMC1 meiotic 94.3 0.16 3.4E-06 57.0 8.8 58 475-533 95-156 (313)
248 cd03214 ABC_Iron-Siderophores_ 94.3 0.096 2.1E-06 53.5 6.5 118 475-595 24-160 (180)
249 PF13604 AAA_30: AAA domain; P 94.2 0.14 3E-06 53.4 7.8 29 473-501 15-43 (196)
250 cd03247 ABCC_cytochrome_bd The 94.2 0.12 2.6E-06 52.7 7.1 26 475-500 27-52 (178)
251 KOG1259 Nischarin, modulator o 94.2 0.0069 1.5E-07 65.7 -2.1 80 817-899 310-390 (490)
252 PF00485 PRK: Phosphoribulokin 94.2 0.14 2.9E-06 53.1 7.5 24 478-501 1-24 (194)
253 PRK12727 flagellar biosynthesi 94.2 0.17 3.8E-06 60.0 9.1 89 475-565 349-438 (559)
254 KOG0741 AAA+-type ATPase [Post 94.2 0.18 4E-06 58.8 9.0 124 475-621 537-684 (744)
255 COG1223 Predicted ATPase (AAA+ 94.1 0.67 1.5E-05 50.0 12.4 172 453-647 119-319 (368)
256 PRK05703 flhF flagellar biosyn 94.1 0.18 4E-06 58.8 9.2 87 476-564 221-308 (424)
257 KOG0735 AAA+-type ATPase [Post 93.9 0.13 2.8E-06 61.9 7.2 158 476-652 431-615 (952)
258 PRK12723 flagellar biosynthesi 93.8 0.24 5.2E-06 57.1 9.3 89 475-565 173-264 (388)
259 COG1121 ZnuC ABC-type Mn/Zn tr 93.8 0.098 2.1E-06 56.6 5.8 118 476-595 30-201 (254)
260 cd00561 CobA_CobO_BtuR ATP:cor 93.8 0.09 2E-06 53.1 5.2 115 477-594 3-139 (159)
261 cd02025 PanK Pantothenate kina 93.8 0.14 3.1E-06 54.3 7.0 23 478-500 1-23 (220)
262 TIGR02239 recomb_RAD51 DNA rep 93.8 0.24 5.2E-06 55.6 9.1 57 475-532 95-155 (316)
263 PRK06547 hypothetical protein; 93.8 0.073 1.6E-06 54.4 4.6 34 467-500 6-39 (172)
264 PF13238 AAA_18: AAA domain; P 93.8 0.039 8.5E-07 52.2 2.4 22 479-500 1-22 (129)
265 PRK07667 uridine kinase; Provi 93.8 0.068 1.5E-06 55.5 4.4 37 464-500 3-41 (193)
266 PF13504 LRR_7: Leucine rich r 93.8 0.033 7.1E-07 34.8 1.2 17 883-899 1-17 (17)
267 PF00560 LRR_1: Leucine Rich R 93.7 0.021 4.5E-07 38.0 0.3 18 884-901 1-18 (22)
268 PLN03187 meiotic recombination 93.7 0.29 6.4E-06 55.5 9.6 58 475-533 125-186 (344)
269 PF14532 Sigma54_activ_2: Sigm 93.6 0.044 9.5E-07 53.6 2.5 43 458-500 1-45 (138)
270 PRK08699 DNA polymerase III su 93.6 0.23 4.9E-06 56.0 8.5 88 554-650 112-203 (325)
271 PF00560 LRR_1: Leucine Rich R 93.6 0.033 7.2E-07 37.0 1.1 22 859-882 1-22 (22)
272 KOG0744 AAA+-type ATPase [Post 93.5 0.17 3.7E-06 55.9 6.9 82 475-566 176-261 (423)
273 TIGR00554 panK_bact pantothena 93.5 0.23 5E-06 55.0 8.1 27 474-500 60-86 (290)
274 COG4608 AppF ABC-type oligopep 93.5 0.19 4E-06 54.7 7.1 121 475-599 38-176 (268)
275 PLN00020 ribulose bisphosphate 93.4 0.11 2.3E-06 59.0 5.3 27 474-500 146-172 (413)
276 COG1618 Predicted nucleotide k 93.4 0.065 1.4E-06 53.8 3.2 35 477-512 6-40 (179)
277 cd01125 repA Hexameric Replica 93.4 0.29 6.3E-06 52.4 8.5 141 478-618 3-199 (239)
278 COG4886 Leucine-rich repeat (L 93.4 0.046 1E-06 62.7 2.5 69 831-901 111-181 (394)
279 KOG1969 DNA replication checkp 93.3 0.17 3.6E-06 61.2 7.1 73 474-566 324-398 (877)
280 cd03228 ABCC_MRP_Like The MRP 93.3 0.18 3.8E-06 51.1 6.5 26 475-500 27-52 (171)
281 PRK12726 flagellar biosynthesi 93.3 0.44 9.6E-06 54.5 10.1 89 475-565 205-295 (407)
282 TIGR01425 SRP54_euk signal rec 93.3 0.37 7.9E-06 56.2 9.6 58 474-533 98-156 (429)
283 TIGR00064 ftsY signal recognit 93.3 0.25 5.5E-06 54.2 8.0 90 474-565 70-164 (272)
284 KOG1859 Leucine-rich repeat pr 93.2 0.013 2.8E-07 70.1 -2.4 67 826-896 199-267 (1096)
285 KOG0733 Nuclear AAA ATPase (VC 93.2 1.5 3.2E-05 52.4 14.2 130 475-625 544-694 (802)
286 KOG4194 Membrane glycoprotein 93.1 0.055 1.2E-06 63.6 2.6 69 831-900 288-358 (873)
287 PRK04301 radA DNA repair and r 93.0 0.43 9.3E-06 53.5 9.5 56 475-531 101-160 (317)
288 PRK05480 uridine/cytidine kina 93.0 0.078 1.7E-06 55.5 3.4 27 474-500 4-30 (209)
289 KOG0736 Peroxisome assembly fa 93.0 2.6 5.6E-05 51.8 16.0 98 450-567 667-776 (953)
290 COG0468 RecA RecA/RadA recombi 93.0 0.26 5.7E-06 54.2 7.5 89 475-565 59-151 (279)
291 TIGR02236 recomb_radA DNA repa 93.0 0.34 7.5E-06 54.0 8.6 56 475-531 94-153 (310)
292 TIGR03877 thermo_KaiC_1 KaiC d 92.9 0.41 8.9E-06 51.3 8.9 48 475-526 20-67 (237)
293 PRK06995 flhF flagellar biosyn 92.9 0.43 9.4E-06 56.4 9.7 88 476-565 256-344 (484)
294 PF13671 AAA_33: AAA domain; P 92.9 0.072 1.6E-06 51.7 2.7 23 478-500 1-23 (143)
295 PLN03186 DNA repair protein RA 92.9 0.46 1E-05 53.9 9.5 57 475-532 122-182 (342)
296 PF12775 AAA_7: P-loop contain 92.9 0.13 2.9E-06 56.4 5.1 87 465-565 23-110 (272)
297 PRK10463 hydrogenase nickel in 92.9 0.4 8.6E-06 53.0 8.7 36 465-500 93-128 (290)
298 COG0542 clpA ATP-binding subun 92.8 0.095 2E-06 64.6 4.2 158 453-624 168-347 (786)
299 cd03238 ABC_UvrA The excision 92.8 0.24 5.1E-06 50.9 6.5 23 475-497 20-42 (176)
300 PRK14723 flhF flagellar biosyn 92.8 0.47 1E-05 58.8 10.1 60 476-535 185-245 (767)
301 KOG0531 Protein phosphatase 1, 92.8 0.057 1.2E-06 62.8 2.1 67 831-900 90-157 (414)
302 PRK06762 hypothetical protein; 92.8 0.081 1.8E-06 53.1 3.0 25 476-500 2-26 (166)
303 PRK12597 F0F1 ATP synthase sub 92.7 0.3 6.4E-06 57.4 7.9 90 476-566 143-248 (461)
304 KOG2739 Leucine-rich acidic nu 92.7 0.07 1.5E-06 57.3 2.4 76 821-898 50-131 (260)
305 COG2884 FtsE Predicted ATPase 92.6 0.16 3.4E-06 52.5 4.7 59 541-599 141-203 (223)
306 TIGR00235 udk uridine kinase. 92.6 0.092 2E-06 55.0 3.2 26 475-500 5-30 (207)
307 TIGR02030 BchI-ChlI magnesium 92.6 0.16 3.5E-06 57.5 5.3 48 453-500 2-49 (337)
308 COG0465 HflB ATP-dependent Zn 92.6 1.1 2.4E-05 54.0 12.6 171 455-648 150-356 (596)
309 TIGR02858 spore_III_AA stage I 92.6 0.22 4.8E-06 54.6 6.3 115 474-595 109-231 (270)
310 PF10236 DAP3: Mitochondrial r 92.6 3.4 7.4E-05 46.3 15.8 47 604-650 258-306 (309)
311 PRK05439 pantothenate kinase; 92.5 0.48 1E-05 53.0 8.9 27 474-500 84-110 (311)
312 cd03216 ABC_Carb_Monos_I This 92.5 0.16 3.5E-06 51.1 4.8 114 475-595 25-144 (163)
313 cd01135 V_A-ATPase_B V/A-type 92.5 0.5 1.1E-05 51.9 8.8 92 476-567 69-178 (276)
314 PRK00889 adenylylsulfate kinas 92.5 0.23 4.9E-06 50.4 5.9 26 475-500 3-28 (175)
315 COG1136 SalX ABC-type antimicr 92.5 0.21 4.6E-06 53.2 5.7 130 475-607 30-215 (226)
316 cd03230 ABC_DR_subfamily_A Thi 92.5 0.25 5.4E-06 50.2 6.1 26 475-500 25-50 (173)
317 TIGR01360 aden_kin_iso1 adenyl 92.4 0.093 2E-06 53.4 2.9 26 475-500 2-27 (188)
318 PF00006 ATP-synt_ab: ATP synt 92.4 0.59 1.3E-05 49.6 8.9 96 467-566 5-116 (215)
319 PRK08972 fliI flagellum-specif 92.4 0.49 1.1E-05 55.2 8.9 89 475-567 161-264 (444)
320 PRK14721 flhF flagellar biosyn 92.3 0.46 1E-05 55.3 8.6 88 475-564 190-278 (420)
321 PRK06002 fliI flagellum-specif 92.2 0.49 1.1E-05 55.4 8.8 89 476-567 165-266 (450)
322 PRK15429 formate hydrogenlyase 92.2 0.41 8.8E-06 59.5 8.8 47 454-500 375-423 (686)
323 COG1102 Cmk Cytidylate kinase 92.2 0.25 5.5E-06 49.7 5.5 44 478-534 2-45 (179)
324 cd01122 GP4d_helicase GP4d_hel 92.2 0.5 1.1E-05 51.4 8.4 52 476-530 30-81 (271)
325 PRK13531 regulatory ATPase Rav 92.2 0.18 3.8E-06 59.4 5.1 43 456-500 21-63 (498)
326 TIGR01420 pilT_fam pilus retra 92.1 0.24 5.2E-06 56.2 6.1 109 475-592 121-229 (343)
327 PRK03839 putative kinase; Prov 92.1 0.098 2.1E-06 53.3 2.7 23 478-500 2-24 (180)
328 KOG4194 Membrane glycoprotein 92.1 0.13 2.8E-06 60.6 3.8 65 831-896 168-234 (873)
329 PRK06067 flagellar accessory p 92.1 0.43 9.2E-06 50.9 7.6 86 475-565 24-130 (234)
330 cd03246 ABCC_Protease_Secretio 92.1 0.23 5E-06 50.4 5.3 26 475-500 27-52 (173)
331 cd02019 NK Nucleoside/nucleoti 92.0 0.11 2.4E-06 44.7 2.5 23 478-500 1-23 (69)
332 CHL00081 chlI Mg-protoporyphyr 92.0 0.17 3.6E-06 57.5 4.6 51 450-500 12-62 (350)
333 PRK13765 ATP-dependent proteas 92.0 0.21 4.6E-06 61.0 5.8 76 454-533 30-105 (637)
334 COG0572 Udk Uridine kinase [Nu 92.0 0.25 5.4E-06 52.3 5.5 27 475-501 7-33 (218)
335 PTZ00035 Rad51 protein; Provis 92.0 0.84 1.8E-05 51.7 10.2 56 475-531 117-176 (337)
336 cd01132 F1_ATPase_alpha F1 ATP 92.0 0.59 1.3E-05 51.3 8.6 94 476-573 69-180 (274)
337 PRK11608 pspF phage shock prot 91.9 0.37 8.1E-06 54.3 7.2 46 455-500 6-53 (326)
338 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.8 0.34 7.3E-06 47.8 6.0 26 475-500 25-50 (144)
339 COG0563 Adk Adenylate kinase a 91.8 0.18 4E-06 51.8 4.2 23 478-500 2-24 (178)
340 PTZ00301 uridine kinase; Provi 91.8 0.13 2.8E-06 54.4 3.2 25 476-500 3-27 (210)
341 KOG0728 26S proteasome regulat 91.8 1.7 3.7E-05 46.6 11.2 145 459-624 151-332 (404)
342 PF13481 AAA_25: AAA domain; P 91.7 0.61 1.3E-05 47.7 8.1 41 477-517 33-81 (193)
343 PRK09280 F0F1 ATP synthase sub 91.7 0.56 1.2E-05 55.1 8.5 90 476-566 144-249 (463)
344 cd02023 UMPK Uridine monophosp 91.7 0.11 2.3E-06 53.9 2.4 23 478-500 1-23 (198)
345 PRK00131 aroK shikimate kinase 91.7 0.14 3E-06 51.3 3.1 26 475-500 3-28 (175)
346 PRK10416 signal recognition pa 91.6 0.96 2.1E-05 50.9 10.0 28 474-501 112-139 (318)
347 PF03308 ArgK: ArgK protein; 91.6 0.28 6E-06 53.2 5.4 62 464-525 15-78 (266)
348 TIGR01359 UMP_CMP_kin_fam UMP- 91.6 0.11 2.4E-06 52.9 2.4 23 478-500 1-23 (183)
349 PRK09519 recA DNA recombinatio 91.6 0.37 7.9E-06 60.0 7.1 84 475-565 59-148 (790)
350 PF00154 RecA: recA bacterial 91.6 0.36 7.7E-06 54.2 6.5 84 476-566 53-142 (322)
351 KOG4579 Leucine-rich repeat (L 91.5 0.019 4.2E-07 56.2 -3.0 79 820-900 59-140 (177)
352 cd02027 APSK Adenosine 5'-phos 91.5 0.29 6.4E-06 48.6 5.2 23 478-500 1-23 (149)
353 COG1428 Deoxynucleoside kinase 91.5 0.13 2.8E-06 53.9 2.7 26 476-501 4-29 (216)
354 KOG3347 Predicted nucleotide k 91.5 0.2 4.4E-06 49.7 3.9 36 477-519 8-43 (176)
355 TIGR03878 thermo_KaiC_2 KaiC d 91.5 0.35 7.7E-06 52.7 6.2 40 475-516 35-74 (259)
356 cd01121 Sms Sms (bacterial rad 91.5 0.51 1.1E-05 54.2 7.8 83 476-566 82-169 (372)
357 KOG4579 Leucine-rich repeat (L 91.4 0.038 8.2E-07 54.2 -1.1 65 835-901 52-118 (177)
358 TIGR02322 phosphon_PhnN phosph 91.4 0.14 3E-06 52.0 2.9 24 477-500 2-25 (179)
359 TIGR00708 cobA cob(I)alamin ad 91.4 0.54 1.2E-05 48.1 7.0 118 476-594 5-141 (173)
360 cd00267 ABC_ATPase ABC (ATP-bi 91.4 0.37 7.9E-06 48.0 5.8 114 476-597 25-144 (157)
361 COG1419 FlhF Flagellar GTP-bin 91.3 0.77 1.7E-05 52.7 8.8 87 475-564 202-290 (407)
362 PF00910 RNA_helicase: RNA hel 91.2 0.12 2.6E-06 48.4 2.0 22 479-500 1-22 (107)
363 PRK08149 ATP synthase SpaL; Va 91.2 0.82 1.8E-05 53.3 9.1 88 475-566 150-252 (428)
364 cd00544 CobU Adenosylcobinamid 91.2 0.44 9.6E-06 48.6 6.2 80 479-565 2-83 (169)
365 PF00625 Guanylate_kin: Guanyl 91.2 0.26 5.7E-06 50.5 4.7 36 476-513 2-37 (183)
366 PTZ00088 adenylate kinase 1; P 91.2 0.21 4.5E-06 53.5 4.0 23 478-500 8-30 (229)
367 KOG3665 ZYG-1-like serine/thre 91.1 0.098 2.1E-06 64.6 1.7 58 834-893 171-230 (699)
368 PRK07132 DNA polymerase III su 91.1 2.7 5.9E-05 46.9 12.9 164 465-652 6-184 (299)
369 PF01583 APS_kinase: Adenylyls 91.1 0.2 4.3E-06 50.4 3.6 35 476-512 2-36 (156)
370 COG1116 TauB ABC-type nitrate/ 91.1 0.4 8.8E-06 51.5 6.0 90 475-564 28-157 (248)
371 PRK04040 adenylate kinase; Pro 91.1 0.16 3.5E-06 52.7 3.0 25 476-500 2-26 (188)
372 cd03222 ABC_RNaseL_inhibitor T 91.1 0.4 8.7E-06 49.3 5.9 26 475-500 24-49 (177)
373 PRK08927 fliI flagellum-specif 91.1 0.83 1.8E-05 53.4 9.0 88 475-566 157-259 (442)
374 PF06745 KaiC: KaiC; InterPro 91.0 0.26 5.6E-06 52.2 4.5 88 475-567 18-127 (226)
375 TIGR03263 guanyl_kin guanylate 91.0 0.16 3.5E-06 51.5 2.8 24 477-500 2-25 (180)
376 PF08477 Miro: Miro-like prote 90.9 0.18 3.9E-06 47.2 2.9 23 479-501 2-24 (119)
377 COG1066 Sms Predicted ATP-depe 90.9 0.6 1.3E-05 53.4 7.4 92 465-565 80-178 (456)
378 TIGR00150 HI0065_YjeE ATPase, 90.9 0.31 6.6E-06 47.8 4.5 27 475-501 21-47 (133)
379 COG0488 Uup ATPase components 90.8 0.61 1.3E-05 55.9 7.9 128 475-608 347-510 (530)
380 PF13086 AAA_11: AAA domain; P 90.8 0.31 6.8E-06 50.7 4.9 35 464-500 7-41 (236)
381 TIGR03498 FliI_clade3 flagella 90.8 0.82 1.8E-05 53.2 8.7 89 475-566 139-241 (418)
382 PF03205 MobB: Molybdopterin g 90.8 0.23 4.9E-06 49.1 3.6 39 477-516 1-39 (140)
383 TIGR03305 alt_F1F0_F1_bet alte 90.8 0.77 1.7E-05 53.8 8.4 90 476-566 138-243 (449)
384 TIGR01817 nifA Nif-specific re 90.8 0.52 1.1E-05 56.8 7.4 48 453-500 194-243 (534)
385 KOG0739 AAA+-type ATPase [Post 90.8 3.1 6.8E-05 45.9 12.3 92 454-566 132-236 (439)
386 TIGR02974 phageshock_pspF psp 90.7 0.55 1.2E-05 53.0 7.1 43 458-500 2-46 (329)
387 PRK04328 hypothetical protein; 90.7 0.63 1.4E-05 50.4 7.3 41 475-517 22-62 (249)
388 cd01129 PulE-GspE PulE/GspE Th 90.7 0.57 1.2E-05 51.2 7.0 106 458-573 62-167 (264)
389 PRK05922 type III secretion sy 90.6 1.1 2.5E-05 52.2 9.6 88 475-566 156-258 (434)
390 KOG4237 Extracellular matrix p 90.6 0.088 1.9E-06 59.5 0.5 67 832-899 270-338 (498)
391 PRK13407 bchI magnesium chelat 90.6 0.28 6E-06 55.5 4.5 49 452-500 5-53 (334)
392 COG1703 ArgK Putative periplas 90.6 0.3 6.6E-06 53.7 4.5 63 465-527 38-102 (323)
393 TIGR03881 KaiC_arch_4 KaiC dom 90.5 1.2 2.6E-05 47.2 9.1 41 475-517 19-59 (229)
394 TIGR01041 ATP_syn_B_arch ATP s 90.5 0.68 1.5E-05 54.5 7.7 89 477-566 142-249 (458)
395 cd04159 Arl10_like Arl10-like 90.5 0.7 1.5E-05 44.6 6.8 22 479-500 2-23 (159)
396 cd01136 ATPase_flagellum-secre 90.5 1.1 2.4E-05 50.5 9.1 88 475-566 68-170 (326)
397 TIGR00764 lon_rel lon-related 90.5 0.56 1.2E-05 57.3 7.2 77 453-533 16-92 (608)
398 TIGR00390 hslU ATP-dependent p 90.4 0.56 1.2E-05 54.4 6.8 45 456-500 13-71 (441)
399 cd00227 CPT Chloramphenicol (C 90.4 0.19 4.1E-06 51.1 2.8 24 477-500 3-26 (175)
400 TIGR00073 hypB hydrogenase acc 90.4 0.23 5E-06 52.0 3.5 32 469-500 15-46 (207)
401 PRK06217 hypothetical protein; 90.4 0.18 3.9E-06 51.7 2.6 24 478-501 3-26 (183)
402 PRK06936 type III secretion sy 90.4 1 2.2E-05 52.7 9.0 88 475-566 161-263 (439)
403 TIGR02868 CydC thiol reductant 90.4 0.72 1.6E-05 55.3 8.1 26 475-500 360-385 (529)
404 cd02021 GntK Gluconate kinase 90.4 0.17 3.7E-06 49.8 2.4 23 478-500 1-23 (150)
405 TIGR03575 selen_PSTK_euk L-ser 90.4 0.56 1.2E-05 53.1 6.7 23 479-501 2-24 (340)
406 cd02020 CMPK Cytidine monophos 90.4 0.18 3.9E-06 49.0 2.5 23 478-500 1-23 (147)
407 PF03193 DUF258: Protein of un 90.3 0.36 7.7E-06 48.9 4.5 35 463-500 25-59 (161)
408 PRK00625 shikimate kinase; Pro 90.3 0.19 4.1E-06 51.5 2.5 23 478-500 2-24 (173)
409 PRK00300 gmk guanylate kinase; 90.1 0.22 4.7E-06 51.8 2.9 26 475-500 4-29 (205)
410 cd02024 NRK1 Nicotinamide ribo 90.1 0.19 4.1E-06 52.1 2.4 23 478-500 1-23 (187)
411 PF08433 KTI12: Chromatin asso 90.1 0.21 4.5E-06 54.8 2.9 25 477-501 2-26 (270)
412 PRK13947 shikimate kinase; Pro 89.9 0.22 4.8E-06 50.1 2.7 23 478-500 3-25 (171)
413 PRK09099 type III secretion sy 89.8 0.92 2E-05 53.2 8.0 89 475-566 162-264 (441)
414 cd02028 UMPK_like Uridine mono 89.7 0.21 4.6E-06 51.2 2.5 23 478-500 1-23 (179)
415 COG1936 Predicted nucleotide k 89.7 0.23 4.9E-06 50.6 2.5 20 478-497 2-21 (180)
416 PRK07594 type III secretion sy 89.7 1.1 2.4E-05 52.3 8.6 88 475-566 154-256 (433)
417 smart00369 LRR_TYP Leucine-ric 89.7 0.2 4.3E-06 34.5 1.5 20 882-901 1-20 (26)
418 smart00370 LRR Leucine-rich re 89.7 0.2 4.3E-06 34.5 1.5 20 882-901 1-20 (26)
419 PF03266 NTPase_1: NTPase; In 89.6 0.3 6.6E-06 49.7 3.4 22 479-500 2-23 (168)
420 PRK14530 adenylate kinase; Pro 89.5 0.23 5E-06 52.3 2.7 24 477-500 4-27 (215)
421 PF07726 AAA_3: ATPase family 89.5 0.17 3.8E-06 49.2 1.5 28 479-508 2-29 (131)
422 PTZ00185 ATPase alpha subunit; 89.5 1.1 2.5E-05 53.0 8.4 91 476-566 189-300 (574)
423 PRK14527 adenylate kinase; Pro 89.5 0.29 6.3E-06 50.5 3.2 26 475-500 5-30 (191)
424 TIGR01069 mutS2 MutS2 family p 89.4 0.1 2.2E-06 65.3 -0.2 25 475-499 321-345 (771)
425 cd00071 GMPK Guanosine monopho 89.4 0.28 6.1E-06 48.1 3.0 23 478-500 1-23 (137)
426 PRK05022 anaerobic nitric oxid 89.4 0.87 1.9E-05 54.6 7.6 47 454-500 186-234 (509)
427 PRK14737 gmk guanylate kinase; 89.3 0.31 6.7E-06 50.5 3.3 26 475-500 3-28 (186)
428 PRK11823 DNA repair protein Ra 89.3 1.2 2.6E-05 52.5 8.6 82 476-565 80-166 (446)
429 PRK05688 fliI flagellum-specif 89.2 1.2 2.7E-05 52.2 8.5 88 475-566 167-269 (451)
430 PRK12678 transcription termina 89.2 0.39 8.5E-06 57.4 4.3 100 467-567 406-515 (672)
431 TIGR01313 therm_gnt_kin carboh 89.1 0.23 5E-06 49.7 2.1 22 479-500 1-22 (163)
432 PRK10078 ribose 1,5-bisphospho 89.1 0.29 6.3E-06 50.3 2.9 24 477-500 3-26 (186)
433 PRK13949 shikimate kinase; Pro 89.1 0.29 6.2E-06 49.8 2.8 23 478-500 3-25 (169)
434 PRK03846 adenylylsulfate kinas 89.1 0.33 7.1E-06 50.5 3.3 27 474-500 22-48 (198)
435 cd01672 TMPK Thymidine monopho 89.1 0.59 1.3E-05 47.6 5.2 24 478-501 2-25 (200)
436 cd00464 SK Shikimate kinase (S 89.0 0.28 6E-06 48.2 2.6 22 479-500 2-23 (154)
437 cd03282 ABC_MSH4_euk MutS4 hom 89.0 0.22 4.8E-06 52.3 2.0 118 475-599 28-157 (204)
438 PRK12339 2-phosphoglycerate ki 88.9 0.33 7.1E-06 50.8 3.2 25 476-500 3-27 (197)
439 PRK10751 molybdopterin-guanine 88.9 0.31 6.8E-06 49.9 2.9 27 475-501 5-31 (173)
440 PRK05201 hslU ATP-dependent pr 88.9 0.72 1.6E-05 53.5 6.1 45 456-500 16-74 (443)
441 cd01134 V_A-ATPase_A V/A-type 88.9 1.2 2.6E-05 50.5 7.8 58 467-528 147-206 (369)
442 PF03215 Rad17: Rad17 cell cyc 88.9 0.49 1.1E-05 56.6 5.0 49 461-513 25-78 (519)
443 TIGR00416 sms DNA repair prote 88.8 1.7 3.8E-05 51.2 9.5 83 475-566 93-181 (454)
444 KOG0924 mRNA splicing factor A 88.8 1.1 2.4E-05 53.8 7.6 126 464-594 361-511 (1042)
445 COG0396 sufC Cysteine desulfur 88.8 1.4 3.1E-05 46.9 7.8 26 475-500 29-54 (251)
446 PRK13975 thymidylate kinase; P 88.8 0.3 6.5E-06 50.3 2.8 25 477-501 3-27 (196)
447 PF13479 AAA_24: AAA domain 88.8 0.89 1.9E-05 48.0 6.4 20 477-496 4-23 (213)
448 KOG1051 Chaperone HSP104 and r 88.8 1.4 3E-05 55.5 8.8 99 458-567 565-672 (898)
449 TIGR01039 atpD ATP synthase, F 88.8 1.4 3.1E-05 51.6 8.5 90 476-566 143-248 (461)
450 PRK05800 cobU adenosylcobinami 88.7 1.2 2.6E-05 45.5 7.0 81 478-565 3-86 (170)
451 COG2401 ABC-type ATPase fused 88.7 0.43 9.4E-06 54.5 4.1 24 476-499 409-432 (593)
452 COG5635 Predicted NTPase (NACH 88.7 0.39 8.5E-06 60.8 4.3 132 477-616 223-371 (824)
453 TIGR03496 FliI_clade1 flagella 88.7 1.7 3.6E-05 50.7 9.0 88 475-566 136-238 (411)
454 TIGR02788 VirB11 P-type DNA tr 88.6 0.71 1.5E-05 51.6 5.9 94 475-573 143-236 (308)
455 COG4240 Predicted kinase [Gene 88.6 0.97 2.1E-05 47.9 6.3 82 474-556 48-134 (300)
456 PRK06793 fliI flagellum-specif 88.6 1.8 3.8E-05 50.7 9.1 90 475-567 155-258 (432)
457 KOG3665 ZYG-1-like serine/thre 88.5 0.25 5.5E-06 61.1 2.3 80 816-896 175-263 (699)
458 PF08298 AAA_PrkA: PrkA AAA do 88.4 0.52 1.1E-05 53.3 4.5 46 455-500 61-112 (358)
459 TIGR02655 circ_KaiC circadian 88.3 1.8 3.9E-05 51.6 9.2 95 466-565 251-363 (484)
460 COG0467 RAD55 RecA-superfamily 88.2 0.42 9E-06 51.9 3.6 42 474-517 21-62 (260)
461 PRK14738 gmk guanylate kinase; 88.2 0.4 8.6E-06 50.3 3.3 26 474-499 11-36 (206)
462 COG1124 DppF ABC-type dipeptid 88.1 0.52 1.1E-05 50.5 4.0 26 475-500 32-57 (252)
463 PTZ00494 tuzin-like protein; P 88.1 2.5 5.5E-05 49.1 9.6 188 426-622 339-543 (664)
464 COG0541 Ffh Signal recognition 88.1 2.2 4.8E-05 49.4 9.2 60 474-535 98-158 (451)
465 PRK04182 cytidylate kinase; Pr 88.1 0.37 8E-06 48.6 2.9 23 478-500 2-24 (180)
466 COG1100 GTPase SAR1 and relate 88.1 0.33 7.1E-06 50.6 2.6 25 477-501 6-30 (219)
467 KOG0729 26S proteasome regulat 88.1 0.97 2.1E-05 48.8 6.0 27 474-500 209-235 (435)
468 PRK07196 fliI flagellum-specif 88.1 1.8 3.9E-05 50.7 8.8 89 475-567 154-257 (434)
469 TIGR02546 III_secr_ATP type II 88.1 2 4.3E-05 50.2 9.2 89 474-566 143-246 (422)
470 PF03969 AFG1_ATPase: AFG1-lik 88.1 0.68 1.5E-05 53.0 5.3 28 475-502 61-88 (362)
471 TIGR01040 V-ATPase_V1_B V-type 88.0 1.2 2.6E-05 52.2 7.2 91 476-566 141-258 (466)
472 CHL00059 atpA ATP synthase CF1 88.0 1.4 3E-05 52.1 7.8 85 477-567 142-245 (485)
473 COG0714 MoxR-like ATPases [Gen 88.0 0.86 1.9E-05 51.4 6.0 64 457-527 26-89 (329)
474 PRK05057 aroK shikimate kinase 88.0 0.39 8.4E-06 49.0 2.9 25 476-500 4-28 (172)
475 cd04139 RalA_RalB RalA/RalB su 87.9 0.38 8.2E-06 47.2 2.8 23 478-500 2-24 (164)
476 cd01124 KaiC KaiC is a circadi 87.9 0.42 9.1E-06 48.6 3.1 37 478-516 1-37 (187)
477 KOG1532 GTPase XAB1, interacts 87.9 0.44 9.6E-06 51.6 3.3 27 475-501 18-44 (366)
478 PF02374 ArsA_ATPase: Anion-tr 87.8 0.51 1.1E-05 52.7 4.0 46 477-524 2-47 (305)
479 COG0194 Gmk Guanylate kinase [ 87.8 0.51 1.1E-05 48.7 3.6 24 477-500 5-28 (191)
480 KOG1644 U2-associated snRNP A' 87.8 0.59 1.3E-05 48.8 4.0 76 819-897 47-127 (233)
481 COG0003 ArsA Predicted ATPase 87.7 0.6 1.3E-05 52.5 4.4 49 476-526 2-50 (322)
482 cd00984 DnaB_C DnaB helicase C 87.6 1.4 3.1E-05 46.9 7.2 51 477-530 14-64 (242)
483 PRK07721 fliI flagellum-specif 87.6 1.9 4E-05 50.7 8.6 27 474-500 156-182 (438)
484 cd01428 ADK Adenylate kinase ( 87.6 0.37 8.1E-06 49.3 2.6 22 479-500 2-23 (194)
485 KOG2739 Leucine-rich acidic nu 87.6 0.34 7.4E-06 52.2 2.3 64 833-897 40-105 (260)
486 TIGR03497 FliI_clade2 flagella 87.6 2 4.4E-05 50.0 8.8 88 475-566 136-238 (413)
487 PF00158 Sigma54_activat: Sigm 87.5 1.5 3.3E-05 44.7 6.9 43 458-500 2-46 (168)
488 TIGR02173 cyt_kin_arch cytidyl 87.5 0.42 9.2E-06 47.8 2.9 23 478-500 2-24 (171)
489 PRK05986 cob(I)alamin adenolsy 87.5 0.89 1.9E-05 47.3 5.2 118 475-594 21-159 (191)
490 PLN02200 adenylate kinase fami 87.5 0.44 9.4E-06 51.2 3.1 26 475-500 42-67 (234)
491 PHA02774 E1; Provisional 87.5 0.87 1.9E-05 54.6 5.8 49 462-514 419-468 (613)
492 PF03029 ATP_bind_1: Conserved 87.5 0.42 9.1E-06 51.5 3.0 21 481-501 1-21 (238)
493 cd04119 RJL RJL (RabJ-Like) su 87.4 0.42 9.1E-06 47.0 2.8 22 479-500 3-24 (168)
494 PRK09281 F0F1 ATP synthase sub 87.4 1.6 3.5E-05 52.0 8.0 88 476-567 162-266 (502)
495 cd00116 LRR_RI Leucine-rich re 87.4 0.27 5.9E-06 54.1 1.5 64 832-896 161-234 (319)
496 TIGR00041 DTMP_kinase thymidyl 87.3 0.94 2E-05 46.5 5.4 25 477-501 4-28 (195)
497 smart00173 RAS Ras subfamily o 87.3 0.43 9.4E-06 47.1 2.8 23 478-500 2-24 (164)
498 PRK14532 adenylate kinase; Pro 87.3 0.41 8.8E-06 49.1 2.6 22 479-500 3-24 (188)
499 PRK06761 hypothetical protein; 87.1 0.65 1.4E-05 51.3 4.2 35 477-512 4-38 (282)
500 cd04163 Era Era subfamily. Er 87.1 0.5 1.1E-05 45.9 3.0 24 476-499 3-26 (168)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-65 Score=627.84 Aligned_cols=547 Identities=28% Similarity=0.433 Sum_probs=418.4
Q ss_pred cchhHHhhhhhccCChHHHHHHHHHHHHhccccccccchhhhhhccccCcccccccceeeeccCCCcccccccCcccCcc
Q 047071 344 IDTRTMDQSEIQLSSSEVESWSSGTVETLSDGNERMLPVHREEFKTAPSQNEVSSTARVVTFKSGPSNVAAAEQVTFSPF 423 (902)
Q Consensus 344 V~~~ledAE~r~itn~~vk~WL~qLRd~aYD~ED~Ld~~~~d~f~~~~~~~~~~~~~k~~~~~~~~~~~a~~~~~~~~~~ 423 (902)
++..++||+.++-+...+..|...+++..|+++|.+..++..........--.+.....++.+.... +.......+
T Consensus 40 l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~----~~~~~~~~~ 115 (889)
T KOG4658|consen 40 LQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGF----CSKNVSDSY 115 (889)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhh----HhHhhhhhH
Confidence 3447899999999999999999999999999999985444444332100000000000111111111 111111112
Q ss_pred ccchhhHHHHHHHHHHhhccc---------CCccccccCCccc--cchHHHHHHHHHhhcCCCceEEEEecCCCCChhhH
Q 047071 424 RIEDEMPLVVKAEAEISSKTE---------TDQWWHEFGLFVS--RSTERTVLKILQCISGVEAGKIGIHGISGIGKTTV 492 (902)
Q Consensus 424 ~i~~e~~~i~~~~~~is~~~~---------~~~~~~~~~~~~~--VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTL 492 (902)
.+.+.+-.+.+.++....+.. .......++..+. ||.+..++++.+.|.+++..+++|+||||+|||||
T Consensus 116 ~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL 195 (889)
T KOG4658|consen 116 KYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTL 195 (889)
T ss_pred hHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHH
Confidence 233333333333333222211 0011223333333 99999999999999988889999999999999999
Q ss_pred HHHHhhccc-ccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCC--cchhhHHHHHhhhcCceeEEEEccchhhhh
Q 047071 493 LKALISYPK-TKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSE--ADSDVAEKLFHFLNGKKFLLLLDDVWEQIN 569 (902)
Q Consensus 493 A~~vy~d~~-vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~--~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~ 569 (902)
|+.++|+.. ++.+|+.++||.||+.++...++.+|++.++....... +.++.+..+.+.|+++||||||||||+..+
T Consensus 196 ~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~d 275 (889)
T KOG4658|consen 196 ARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVD 275 (889)
T ss_pred HHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccccc
Confidence 999999998 99999999999999999999999999999887552221 336888999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCcEEEEEcccCCcccc-cCcceeEEecccCHHHHHHHHHHHhcC--cccCCCCcchHHHHHHHhCCC
Q 047071 570 LQEVGIPDPSSENVGKIVVASRTVGACLE-MDASKLIEVETVSKKEAWELFYEQVGR--VIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 570 ~~~L~~~l~~~~~GSkIIVTTR~~~va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~--~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
|+.+..++|...+||||++|||+..|+.. +++...++++.|+.+|||.||.+.+|. ...++.++++|++|+++|+|+
T Consensus 276 w~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GL 355 (889)
T KOG4658|consen 276 WDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGL 355 (889)
T ss_pred HHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCCh
Confidence 99999999999999999999999999988 888899999999999999999999998 344456899999999999999
Q ss_pred cchhhhhcccccccchhhhhhHhhHhhhhhc-cccc--hHHHHHHhhhccccCCchhHHHHHHhhccCCCCcccchhhhh
Q 047071 647 PLLIIVTGRALTEENNVLVWEHTSKLFSKSI-ANAT--IEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFI 723 (902)
Q Consensus 647 PLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~-~~~~--~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI 723 (902)
|||++++|+.|+.+.+..+|+++.+.+.+.. .+.+ .+.+..+|.+||+.||+ ++|.||+|||+||+++.|+++.|+
T Consensus 356 PLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 356 PLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHH
Confidence 9999999999999999999999999988773 3332 67899999999999996 999999999999999999999999
Q ss_pred hhhccccccccc--ccchHHHHHHHHHHHHhcccccccc---CCCcccchHHHHHHHHHHhcc---cccchhhhhccccc
Q 047071 724 ENCIHEGVIAGS--LGDARKRGQDIIDILVGASLLQVTE---AGDSIKMHDLIRDLALGILSV---SEDSQILLSAYSRL 795 (902)
Q Consensus 724 ~lWiAeG~i~~~--~~~~e~~~~~~L~~Lv~rSLLq~~~---~~~~y~MHdLVrdla~~i~~~---~ee~~i~~~~~~~~ 795 (902)
.+|+||||+... +...++.|++|+++|++++|++... ...+|+|||+||++|..++.. .+++++..... ..
T Consensus 435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~-~~ 513 (889)
T KOG4658|consen 435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGV-GL 513 (889)
T ss_pred HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCc-Cc
Confidence 999999999885 6778999999999999999999875 347899999999999999982 11222222211 11
Q ss_pred ccccccCCCCCCcccccCC-------------CCceeeccCCC--CCCCCC--cccccccEEEeccCC-CcccCCCC-CC
Q 047071 796 IETSSSASSSSSRTLKVPE-------------GHRFLLRAGAG--LTEPPS--LKEWEQAKFIFLMDN-ELCTLPEK-PS 856 (902)
Q Consensus 796 i~~~~~~~~~~~R~Lsv~~-------------~~~~l~~~~~~--l~~lp~--l~~l~~Lr~L~L~~~-~i~~LP~~-~~ 856 (902)
.+..........|+++... ..+.+...+.. +..++. +..++.||+|||++| .+.+||++ ++
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 1111122233445544422 12222222221 444443 777889999999976 68889998 89
Q ss_pred CCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC-CCccC
Q 047071 857 CSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-RINCL 898 (902)
Q Consensus 857 L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~I~~L 898 (902)
|.+||||+|+ ++.++.||.+ +++|+.|.|||+..+ ++..+
T Consensus 594 Li~LryL~L~-~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 594 LVHLRYLDLS-DTGISHLPSG-LGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred hhhhhccccc-CCCccccchH-HHHHHhhheeccccccccccc
Confidence 9999999999 8889999999 999999999999988 44444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-49 Score=505.29 Aligned_cols=505 Identities=19% Similarity=0.207 Sum_probs=368.9
Q ss_pred HHHHhccccccccchhhhhhccccCcccc-cccceeeeccCCCcccccccCcccCccccchhhHHHHHHHHHHhhcccCC
Q 047071 368 TVETLSDGNERMLPVHREEFKTAPSQNEV-SSTARVVTFKSGPSNVAAAEQVTFSPFRIEDEMPLVVKAEAEISSKTETD 446 (902)
Q Consensus 368 LRd~aYD~ED~Ld~~~~d~f~~~~~~~~~-~~~~k~~~~~~~~~~~a~~~~~~~~~~~i~~e~~~i~~~~~~is~~~~~~ 446 (902)
|-.+.|+++..-.+.+...|+........ ....++.+|+.++..+++..|+++. ....|.+.|.+++++|...+...
T Consensus 101 v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~--~~~~E~~~i~~Iv~~v~~~l~~~ 178 (1153)
T PLN03210 101 VIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ--NWPNEAKMIEEIANDVLGKLNLT 178 (1153)
T ss_pred EEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecC--CCCCHHHHHHHHHHHHHHhhccc
Confidence 44567877655555555555533222111 1225678999999999999998764 55678999999999999988643
Q ss_pred ccccccCCccccchHHHHHHHHHhhc--CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec---ccc----
Q 047071 447 QWWHEFGLFVSRSTERTVLKILQCIS--GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV---SRY---- 517 (902)
Q Consensus 447 ~~~~~~~~~~~VGRe~ele~L~~~L~--~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v---s~~---- 517 (902)
+ ......+|||+..+++|..+|. .+++++|+||||||+||||||+++|+.. ..+|++.+|+.. ...
T Consensus 179 ~---~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l--~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 179 P---SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL--SRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred c---CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH--hhcCCeEEEeeccccccchhhc
Confidence 3 2345668999999999999884 3578999999999999999999999976 788999888752 111
Q ss_pred -------Cc-HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEE
Q 047071 518 -------WS-VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVA 589 (902)
Q Consensus 518 -------~~-~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVT 589 (902)
.+ ...++.+++.++...... ... ....+++.++++|+||||||||+..+|+.+.....+.++||+||||
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDI--KIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCc--ccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 01 223445555554332211 111 1246778899999999999999999999998777777899999999
Q ss_pred cccCCcccccCcceeEEecccCHHHHHHHHHHHhcCc-ccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhH
Q 047071 590 SRTVGACLEMDASKLIEVETVSKKEAWELFYEQVGRV-IELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEH 668 (902)
Q Consensus 590 TR~~~va~~~~~~~~~~L~~Ls~ees~~LF~~~af~~-~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~ 668 (902)
||+..++...+..++|+++.|++++||+||++.||+. .+...+.+++++|+++|+|+|||++++|++|++ ++..+|+.
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~ 409 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMD 409 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHH
Confidence 9999998777778899999999999999999999983 334457789999999999999999999999998 57899999
Q ss_pred hhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHH
Q 047071 669 TSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIID 748 (902)
Q Consensus 669 ~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~ 748 (902)
+++.++... ...+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... ...++
T Consensus 410 ~l~~L~~~~----~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------~~~l~ 473 (1153)
T PLN03210 410 MLPRLRNGL----DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------NIGLK 473 (1153)
T ss_pred HHHHHHhCc----cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------hhChH
Confidence 999887643 3579999999999998745999999999999887654 3566776654322 22389
Q ss_pred HHHhccccccccCCCcccchHHHHHHHHHHhcccccc-----hh-hhhccccc------------------------ccc
Q 047071 749 ILVGASLLQVTEAGDSIKMHDLIRDLALGILSVSEDS-----QI-LLSAYSRL------------------------IET 798 (902)
Q Consensus 749 ~Lv~rSLLq~~~~~~~y~MHdLVrdla~~i~~~~ee~-----~i-~~~~~~~~------------------------i~~ 798 (902)
.|+++|||+.. .+.|.||||+|+||+++++.+... ++ ...+.... +..
T Consensus 474 ~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 474 NLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred HHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 99999999876 467999999999999998732100 00 00000000 001
Q ss_pred cccCCCCCCccccc----------------------CCCCceeeccCCCCCCCCCc-----------------------c
Q 047071 799 SSSASSSSSRTLKV----------------------PEGHRFLLRAGAGLTEPPSL-----------------------K 833 (902)
Q Consensus 799 ~~~~~~~~~R~Lsv----------------------~~~~~~l~~~~~~l~~lp~l-----------------------~ 833 (902)
..+..+.+.+.|.+ +...+++.+.++.++.+|.. .
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc
Confidence 11222333333322 22355666667666666643 3
Q ss_pred cccccEEEeccCC-CcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC-CCccCCCCC
Q 047071 834 EWEQAKFIFLMDN-ELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-RINCLPNTF 902 (902)
Q Consensus 834 ~l~~Lr~L~L~~~-~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~I~~LP~sI 902 (902)
.+.+|++|+|+++ .+..+|+.+.+++|++|+|++|..+..+|.+ |++|.+|++|+|++| +++.||..+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC
Confidence 3455666666654 3566676677788888888888888888888 888888888888888 888888753
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8e-42 Score=372.35 Aligned_cols=274 Identities=31% Similarity=0.502 Sum_probs=231.2
Q ss_pred hHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCC-
Q 047071 460 TERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCE- 536 (902)
Q Consensus 460 Re~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~- 536 (902)
||.++++|.+.|.+ ++.++|+|+||||+||||||..+|++..++.+|+.++|++++...+..+++..|+.++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999997779999999999999999999999999999987742
Q ss_pred --CCCcchhhHHHHHhhhcCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcccccCc-ceeEEecccCHH
Q 047071 537 --DSEADSDVAEKLFHFLNGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLEMDA-SKLIEVETVSKK 613 (902)
Q Consensus 537 --~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~~-~~~~~L~~Ls~e 613 (902)
...+.......+.+.|.++++||||||||+...|+.+...++....|++||||||+..++..++. ...++|++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44577889999999999999999999999999999998888877889999999999988776554 678999999999
Q ss_pred HHHHHHHHHhcCc--ccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhHhhHhhhhhccccc--hHHHHHHh
Q 047071 614 EAWELFYEQVGRV--IELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEHTSKLFSKSIANAT--IEEVIQLL 689 (902)
Q Consensus 614 es~~LF~~~af~~--~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~~~~~--~~~v~~iL 689 (902)
+|++||.+.++.. ...+...+.+++|+++|+|+|||++++|++|+.+.+..+|..+++.+.....+.. ...+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999883 3456778899999999999999999999999877788999999988877764432 58899999
Q ss_pred hhccccCCchhHHHHHHhhccCCCCcccchhhhhhhhcccccccc
Q 047071 690 KFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAG 734 (902)
Q Consensus 690 ~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~ 734 (902)
.+||+.||+ ++|+||++||+||+++.|+++.|+++|+++|++..
T Consensus 241 ~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999 99999999999999999999999999999999875
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=1.5e-11 Score=155.09 Aligned_cols=290 Identities=16% Similarity=0.170 Sum_probs=179.1
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcC
Q 047071 456 VSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLY 534 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~ 534 (902)
..|-|..-++.|-.. ...+++.|.|++|.||||++..+.+.. +.++|+++... .++..+...++..+...
T Consensus 15 ~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l~~~l~~~ 85 (903)
T PRK04841 15 NTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYLIAALQQA 85 (903)
T ss_pred ccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence 446776555544321 457899999999999999999987532 26899998644 46667777777766422
Q ss_pred CCC-------------CCcchhhHHHHHhhhc--CceeEEEEccchhhh--hhh-hhcCCCCCCCCCcEEEEEcccCCcc
Q 047071 535 CED-------------SEADSDVAEKLFHFLN--GKKFLLLLDDVWEQI--NLQ-EVGIPDPSSENVGKIVVASRTVGAC 596 (902)
Q Consensus 535 ~~~-------------~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~--~~~-~L~~~l~~~~~GSkIIVTTR~~~va 596 (902)
... ..+.......+...+. +.+++|||||+...+ ... .+...+....++.++|||||...-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~ 165 (903)
T PRK04841 86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPL 165 (903)
T ss_pred cCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCC
Confidence 110 0122223333333333 679999999997542 122 2222223344567888999985322
Q ss_pred cc--c-CcceeEEec----ccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhHh
Q 047071 597 LE--M-DASKLIEVE----TVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEHT 669 (902)
Q Consensus 597 ~~--~-~~~~~~~L~----~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~~ 669 (902)
.. . .......+. +|+.+|+..||....+. +-..+.+.+|.+.|+|+|+++..++..++...... ...
T Consensus 166 ~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~ 239 (903)
T PRK04841 166 GIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS----PIEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDS 239 (903)
T ss_pred chHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC----CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhh
Confidence 11 0 112345555 99999999999876654 12345678999999999999999887765432100 000
Q ss_pred hHhhhhhccccchHHHHHHhhh-ccccCCchhHHHHHHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHH
Q 047071 670 SKLFSKSIANATIEEVIQLLKF-SFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIID 748 (902)
Q Consensus 670 l~~l~~~~~~~~~~~v~~iL~l-SYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~ 748 (902)
...+ ...+...+...+.- .++.||+ +.+..++.+|+++ . ++.+.+ ..+.. ...+...++
T Consensus 240 ~~~~----~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~-~--~~~~l~------~~l~~------~~~~~~~L~ 299 (903)
T PRK04841 240 ARRL----AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR-S--MNDALI------VRVTG------EENGQMRLE 299 (903)
T ss_pred hHhh----cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc-c--CCHHHH------HHHcC------CCcHHHHHH
Confidence 0111 01111234444333 3789999 8999999999986 2 332211 11111 123467799
Q ss_pred HHHhcccccc-cc-CCCcccchHHHHHHHHHHhc
Q 047071 749 ILVGASLLQV-TE-AGDSIKMHDLIRDLALGILS 780 (902)
Q Consensus 749 ~Lv~rSLLq~-~~-~~~~y~MHdLVrdla~~i~~ 780 (902)
.|.+.+++.. .+ ....|++|++++++.+....
T Consensus 300 ~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 300 ELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 9999999653 32 34579999999999987653
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.10 E-value=6.5e-09 Score=119.11 Aligned_cols=295 Identities=15% Similarity=0.059 Sum_probs=168.6
Q ss_pred cccCCccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHH
Q 047071 450 HEFGLFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQN 525 (902)
Q Consensus 450 ~~~~~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~ 525 (902)
+.+.+..++||+.++++|...|.+ .....+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 344556679999999999998843 3456688999999999999999998764333233467777777778889999
Q ss_pred HHHHhcCcCC--CCCCcchhhHHHHHhhhc--CceeEEEEccchhhh------hhhhhcCCCCCCCCCcE--EEEEcccC
Q 047071 526 DVLRQLPLYC--EDSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQI------NLQEVGIPDPSSENVGK--IVVASRTV 593 (902)
Q Consensus 526 ~Il~~L~~~~--~~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~------~~~~L~~~l~~~~~GSk--IIVTTR~~ 593 (902)
.++.++.... ....+..+....+.+.+. +++.+||||+++... .+..+...+.. ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 9999986522 222245566677777664 456899999998743 23333222221 12333 55555554
Q ss_pred CcccccC-------cceeEEecccCHHHHHHHHHHHhcCc-ccCCCCcchHHHHHHHh----CCCcchhhhhcccc--c-
Q 047071 594 GACLEMD-------ASKLIEVETVSKKEAWELFYEQVGRV-IELPHIQPFAQTIVYGC----GGLPLLIIVTGRAL--T- 658 (902)
Q Consensus 594 ~va~~~~-------~~~~~~L~~Ls~ees~~LF~~~af~~-~~~~~l~~ia~~Ia~~c----~GlPLAL~vlg~~L--r- 658 (902)
.+..... ....+.+.+++.++..+++...+... ....-..+..+.|++.+ |..+.|+.++-... .
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322111 12467899999999999998776321 11112234455565555 33556665553221 1
Q ss_pred -cc---chhhhhhHhhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCCC--Ccccchhhhhhh--hcccc
Q 047071 659 -EE---NNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPE--DKEVNVFEFIEN--CIHEG 730 (902)
Q Consensus 659 -~~---~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~--~~~I~~~~LI~l--WiAeG 730 (902)
.+ -+.+....+.+... .....-.+..||. +.|..+..++..-. ...+....+... .+++.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~-----------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE-----------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH-----------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 10 12233333222221 1223345778888 55554444432211 122333333211 11111
Q ss_pred cccccccchHHHHHHHHHHHHhccccccc
Q 047071 731 VIAGSLGDARKRGQDIIDILVGASLLQVT 759 (902)
Q Consensus 731 ~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~ 759 (902)
+-. .........++++.|.+.+||+..
T Consensus 332 ~~~--~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGY--EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCC--CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 100 111345667889999999999853
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=5e-10 Score=117.37 Aligned_cols=193 Identities=22% Similarity=0.213 Sum_probs=101.5
Q ss_pred cchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHH-----------
Q 047071 458 RSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQND----------- 526 (902)
Q Consensus 458 VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~----------- 526 (902)
+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+... ..-...+|+..........+..-
T Consensus 2 ~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (234)
T PF01637_consen 2 FGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK--EKGYKVVYIDFLEESNESSLRSFIEETSLADELS 79 (234)
T ss_dssp -S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCH
T ss_pred CCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCCcEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 79999999999999877778999999999999999999988762 22224455544333322111111
Q ss_pred --HHHhcCcCC------CCCCcchhhHHHHHhhhc--CceeEEEEccchhhh-h----------hhhhcCCCCCCCCCcE
Q 047071 527 --VLRQLPLYC------EDSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQI-N----------LQEVGIPDPSSENVGK 585 (902)
Q Consensus 527 --Il~~L~~~~------~~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~-~----------~~~L~~~l~~~~~GSk 585 (902)
+...+.... ............+.+.+. +++++||+|++.... . +..+........+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 159 (234)
T PF01637_consen 80 EALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSI 159 (234)
T ss_dssp HHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEE
T ss_pred HHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceE
Confidence 111111110 011122233334444443 345999999997655 1 1122222222334444
Q ss_pred EEEEcccCCc-------ccccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 586 IVVASRTVGA-------CLEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 586 IIVTTR~~~v-------a~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
|+++|...-. ....+....+.|++|+.+++++++...+.....-+...+..++|...+||+|..|..
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 5555542111 112233445999999999999999986544200022456679999999999987753
No 7
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.07 E-value=1.9e-09 Score=128.67 Aligned_cols=291 Identities=15% Similarity=0.134 Sum_probs=189.8
Q ss_pred cccchHHHHHHHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCc
Q 047071 456 VSRSTERTVLKILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPL 533 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~ 533 (902)
..|-|. .|++.|.. .+.+.+.|..|+|.|||||+..++... ..=..+.|++++.. .++..+...++..+..
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 346665 45555655 478999999999999999999997622 33356899998765 4688888888888763
Q ss_pred CCC-------------CCCcchhhHHHHHhhhc--CceeEEEEccchhh---hhhhhhcCCCCCCCCCcEEEEEcccCCc
Q 047071 534 YCE-------------DSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQ---INLQEVGIPDPSSENVGKIVVASRTVGA 595 (902)
Q Consensus 534 ~~~-------------~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~---~~~~~L~~~l~~~~~GSkIIVTTR~~~v 595 (902)
-.+ ...+...+...+...+. .++.+|||||..-. .--..+.-.+.....+-.+|||||+..-
T Consensus 93 ~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 93 ATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 321 12233344444544443 46899999997532 2122222223344567889999998764
Q ss_pred cccc---CcceeEEec----ccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhH
Q 047071 596 CLEM---DASKLIEVE----TVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEH 668 (902)
Q Consensus 596 a~~~---~~~~~~~L~----~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~ 668 (902)
.... -....++++ .|+.+|+..+|....+. +-...-.+.|.+..+|.+-|+..++-.++.+.+.+.-..
T Consensus 173 l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 173 LGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred CcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 3211 112233443 58999999999886643 233445789999999999999999988885444443333
Q ss_pred hhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHH
Q 047071 669 TSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIID 748 (902)
Q Consensus 669 ~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~ 748 (902)
.+......++++-.+.| ++.||+ +++..++.+|+++.-. .+++... ..++.+...++
T Consensus 249 ~LsG~~~~l~dYL~eeV-------ld~Lp~-~l~~FLl~~svl~~f~-------------~eL~~~L--tg~~ng~amLe 305 (894)
T COG2909 249 GLSGAASHLSDYLVEEV-------LDRLPP-ELRDFLLQTSVLSRFN-------------DELCNAL--TGEENGQAMLE 305 (894)
T ss_pred hccchHHHHHHHHHHHH-------HhcCCH-HHHHHHHHHHhHHHhh-------------HHHHHHH--hcCCcHHHHHH
Confidence 22222222222212223 678999 8999999999975321 1122111 22456777899
Q ss_pred HHHhccccc-c-ccCCCcccchHHHHHHHHHHhc
Q 047071 749 ILVGASLLQ-V-TEAGDSIKMHDLIRDLALGILS 780 (902)
Q Consensus 749 ~Lv~rSLLq-~-~~~~~~y~MHdLVrdla~~i~~ 780 (902)
+|.+++|+- + .+....|+.|.|+.+|.+.-..
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 999999875 2 3367899999999999987765
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.00 E-value=2.8e-08 Score=112.63 Aligned_cols=296 Identities=14% Similarity=0.111 Sum_probs=163.9
Q ss_pred cccCCccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhccccc-ccc---cEEEEeeccccCcHH
Q 047071 450 HEFGLFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTK-LIF---DVIILVTVSRYWSVR 521 (902)
Q Consensus 450 ~~~~~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr-~~F---d~i~WV~vs~~~~~~ 521 (902)
+.+.++.++||+.++++|..+|.. .....+.|+|++|+|||++++.+++..... ... -..+|+++....+..
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 345556789999999999999853 345678999999999999999999765211 110 245678877777788
Q ss_pred HHHHHHHHhcC---cCCC-CCCcchhhHHHHHhhhc--CceeEEEEccchhhh-h----hhhhcCC--CCCCC-CCcEEE
Q 047071 522 KIQNDVLRQLP---LYCE-DSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQI-N----LQEVGIP--DPSSE-NVGKIV 587 (902)
Q Consensus 522 ~ll~~Il~~L~---~~~~-~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~-~----~~~L~~~--l~~~~-~GSkII 587 (902)
.++..++.++. ...+ ...+..+....+.+.+. +++++||||+++... . +..+... ..... ....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 89999999884 2211 12233445555666653 568899999998761 1 2222211 11111 222344
Q ss_pred EEcccCCcccccC-------cceeEEecccCHHHHHHHHHHHhcC-cc---cCCCCcchHHHHHHHhCCCcchh-hhhcc
Q 047071 588 VASRTVGACLEMD-------ASKLIEVETVSKKEAWELFYEQVGR-VI---ELPHIQPFAQTIVYGCGGLPLLI-IVTGR 655 (902)
Q Consensus 588 VTTR~~~va~~~~-------~~~~~~L~~Ls~ees~~LF~~~af~-~~---~~~~l~~ia~~Ia~~c~GlPLAL-~vlg~ 655 (902)
.++........+. ....+.+++++.++..+++..++.. .. -.++..+.+..++..+.|.|-.+ .++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4554332211110 1246889999999999999887642 11 11111223445566667887433 32211
Q ss_pred cc--c--cc---chhhhhhHhhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCC--CCcccchhhhhhhh
Q 047071 656 AL--T--EE---NNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFP--EDKEVNVFEFIENC 726 (902)
Q Consensus 656 ~L--r--~~---~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP--~~~~I~~~~LI~lW 726 (902)
.. . .+ -+.+....+.+.+. .....-.+..||. +.+..+..++..- .+..+....+...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~-----------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE-----------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 11 1 00 11222222221110 1222345567887 5665554443211 22334444444321
Q ss_pred --cccccccccccchHHHHHHHHHHHHhccccccc
Q 047071 727 --IHEGVIAGSLGDARKRGQDIIDILVGASLLQVT 759 (902)
Q Consensus 727 --iAeG~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~ 759 (902)
+++.+ . ..........++++.|...|||+..
T Consensus 318 ~~~~~~~-~-~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 318 KEVCEDI-G-VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHhc-C-CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11111 1 0123457788889999999999864
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.99 E-value=1.2e-08 Score=112.98 Aligned_cols=272 Identities=13% Similarity=0.109 Sum_probs=150.1
Q ss_pred ccccchHHHHHHHHHhhcC-----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHH
Q 047071 455 FVSRSTERTVLKILQCISG-----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~-----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
..+||++..+++|..++.. .....+.++|++|+|||+||+.+++... ..+. .+.... ......+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~~---~~~~~~-~~~~~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNLK---ITSGPA-LEKPGDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEE---Eeccch-hcCchhHHHHHH
Confidence 4579999999999888852 3456688999999999999999988763 2221 111111 111112222333
Q ss_pred hcCcCC----CCCCc-chhhHHHHHhhhcCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCccccc--Ccc
Q 047071 530 QLPLYC----EDSEA-DSDVAEKLFHFLNGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLEM--DAS 602 (902)
Q Consensus 530 ~L~~~~----~~~~~-~~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~--~~~ 602 (902)
.+.... .+... .....+.+...+.+.+..+|+++..+..++... ..+.+-|..||+...+.... ...
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhhcc
Confidence 332211 00000 112223344455555555666655444333221 12244566677765443321 123
Q ss_pred eeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhHhhHhhhhh-ccccc
Q 047071 603 KLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEHTSKLFSKS-IANAT 681 (902)
Q Consensus 603 ~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~-~~~~~ 681 (902)
..+.+++++.++..+++...+.. ....-..+....|++.|+|.|-.+..++..+ |.... ..... .....
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~-~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~it~~~ 221 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGL-LNVEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKIINRDI 221 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCcCHHH
Confidence 56799999999999999988764 2222335677899999999997655444322 11110 00000 00000
Q ss_pred hHHHHHHhhhccccCCchhHHHHHH-hhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHH-HHHhccccccc
Q 047071 682 IEEVIQLLKFSFDQLKDFDTKSCLL-YSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIID-ILVGASLLQVT 759 (902)
Q Consensus 682 ~~~v~~iL~lSYd~Lp~~~lK~cfL-~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~-~Lv~rSLLq~~ 759 (902)
.......+...|..|++ ..+..+. .++.+..+ .+..+.+... .+.....+...++ .|++.+||+..
T Consensus 222 v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~----------lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 222 ALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAA----------LGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHH----------hCCCcchHHHhhhHHHHHcCCcccC
Confidence 12233336777888888 5666555 44556433 3333322211 2334556777788 69999999865
Q ss_pred c
Q 047071 760 E 760 (902)
Q Consensus 760 ~ 760 (902)
.
T Consensus 290 ~ 290 (305)
T TIGR00635 290 P 290 (305)
T ss_pred C
Confidence 3
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.94 E-value=1.6e-08 Score=113.34 Aligned_cols=275 Identities=13% Similarity=0.086 Sum_probs=150.2
Q ss_pred CCccccchHHHHHHHHHhhc-----CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCIS-----GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~-----~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
....++|++..++.+..++. ....+.+.|+|++|+|||+||+.+++.... .+. ++.. ........+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~~---~~~~-~~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NIR---ITSG-PALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--CeE---EEec-ccccChHHHHHH
Confidence 34567999999999988774 234567889999999999999999987732 221 1111 111112223333
Q ss_pred HHhcCcCC----CCCCcc-hhhHHHHHhhhcCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcccccC--
Q 047071 528 LRQLPLYC----EDSEAD-SDVAEKLFHFLNGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLEMD-- 600 (902)
Q Consensus 528 l~~L~~~~----~~~~~~-~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~-- 600 (902)
+..+.... .+.... ....+.+...+.+.+..+|+|+..+...+.. .+ .+.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHHHh
Confidence 33332211 000000 1112223333344444444444333222111 11 12344566776554432211
Q ss_pred cceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhHhhHhhhhhcccc
Q 047071 601 ASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEHTSKLFSKSIANA 680 (902)
Q Consensus 601 ~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~~~~ 680 (902)
....+.+++++.++..+++...+.. ....-..+.+..|++.|+|.|-.+..+...+. .|..... .......
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~-~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~--~~~I~~~ 241 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARI-LGVEIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG--DGVITKE 241 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC--CCCCCHH
Confidence 1356899999999999999988765 22233346789999999999964444433221 1211100 0001000
Q ss_pred chHHHHHHhhhccccCCchhHHHHHH-hhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHH-HHHhcccccc
Q 047071 681 TIEEVIQLLKFSFDQLKDFDTKSCLL-YSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIID-ILVGASLLQV 758 (902)
Q Consensus 681 ~~~~v~~iL~lSYd~Lp~~~lK~cfL-~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~-~Lv~rSLLq~ 758 (902)
........+...+..|++ ..+..+. .+..|+.+ .+..+.+... .......+++.++ .|++.+||+.
T Consensus 242 ~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~----------lg~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 242 IADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAA----------LGEERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHH----------HCCCcchHHHHhhHHHHHcCCccc
Confidence 023344556778888988 5666664 66667655 3444433211 2234456666778 9999999986
Q ss_pred cc
Q 047071 759 TE 760 (902)
Q Consensus 759 ~~ 760 (902)
..
T Consensus 310 ~~ 311 (328)
T PRK00080 310 TP 311 (328)
T ss_pred CC
Confidence 53
No 11
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=2.4e-08 Score=108.18 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=113.7
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL- 552 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L- 552 (902)
.+.+++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..++..++.+.... +.......+...+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHH
Confidence 445689999999999999999999886422 21 22333 2334567788889998887654322 2233333443322
Q ss_pred ----cCceeEEEEccchhhh--hhhhhcC---CCCCCCCCcEEEEEcccCCc---cc-c---c--CcceeEEecccCHHH
Q 047071 553 ----NGKKFLLLLDDVWEQI--NLQEVGI---PDPSSENVGKIVVASRTVGA---CL-E---M--DASKLIEVETVSKKE 614 (902)
Q Consensus 553 ----~~kr~LLVLDDV~d~~--~~~~L~~---~l~~~~~GSkIIVTTR~~~v---a~-~---~--~~~~~~~L~~Ls~ee 614 (902)
.+++.+||+||++... .++.+.. ..........|++|...... .. . . .....+.+++|+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 5788999999998753 3444421 11112223345555543211 00 0 0 113467899999999
Q ss_pred HHHHHHHHhcCc--c-cCCCCcchHHHHHHHhCCCcchhhhhcccc
Q 047071 615 AWELFYEQVGRV--I-ELPHIQPFAQTIVYGCGGLPLLIIVTGRAL 657 (902)
Q Consensus 615 s~~LF~~~af~~--~-~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~L 657 (902)
...++...+... . ...-..+..+.|++.++|.|..++.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998776431 1 122335788999999999999999888765
No 12
>PF05729 NACHT: NACHT domain
Probab=98.86 E-value=9.2e-09 Score=102.17 Aligned_cols=141 Identities=19% Similarity=0.223 Sum_probs=89.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhccccccc----ccEEEEeeccccCcHH---HHHHHHHHhcCcCCCCCCcchhhHHHHH
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLI----FDVIILVTVSRYWSVR---KIQNDVLRQLPLYCEDSEADSDVAEKLF 549 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~----Fd~i~WV~vs~~~~~~---~ll~~Il~~L~~~~~~~~~~~~l~~~L~ 549 (902)
|++.|.|.+|+||||+++.++........ +...+|++........ .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 58899999999999999999876644332 4566777665543322 333333333322211 1111 122
Q ss_pred hh-hcCceeEEEEccchhhhh---------hhhhc-CCCCC-CCCCcEEEEEcccCCc---ccccCcceeEEecccCHHH
Q 047071 550 HF-LNGKKFLLLLDDVWEQIN---------LQEVG-IPDPS-SENVGKIVVASRTVGA---CLEMDASKLIEVETVSKKE 614 (902)
Q Consensus 550 ~~-L~~kr~LLVLDDV~d~~~---------~~~L~-~~l~~-~~~GSkIIVTTR~~~v---a~~~~~~~~~~L~~Ls~ee 614 (902)
.. ...++++||||++++... +..+. ..++. ..++.++|||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 257899999999986532 22222 12222 3568999999998776 2333445689999999999
Q ss_pred HHHHHHHHh
Q 047071 615 AWELFYEQV 623 (902)
Q Consensus 615 s~~LF~~~a 623 (902)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997754
No 13
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.48 E-value=1.4e-06 Score=108.94 Aligned_cols=307 Identities=15% Similarity=0.169 Sum_probs=176.6
Q ss_pred cccchHHHHHHHHHhhcC---CCceEEEEecCCCCChhhHHHHHhhccccc-ccccEEEEeeccccC---cHHHHHHHHH
Q 047071 456 VSRSTERTVLKILQCISG---VEAGKIGIHGISGIGKTTVLKALISYPKTK-LIFDVIILVTVSRYW---SVRKIQNDVL 528 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~---~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr-~~Fd~i~WV~vs~~~---~~~~ll~~Il 528 (902)
+++||+.+++.|...+.+ +.-.++.+.|..|||||+|++.|....... ..|-.-.|-....+. ...+.++++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 358999999999999864 556799999999999999999998655322 222111111111111 2333444444
Q ss_pred Hhc-------------------CcCCC----------------------CCCcchhh-----HHHHHhhh-cCceeEEEE
Q 047071 529 RQL-------------------PLYCE----------------------DSEADSDV-----AEKLFHFL-NGKKFLLLL 561 (902)
Q Consensus 529 ~~L-------------------~~~~~----------------------~~~~~~~l-----~~~L~~~L-~~kr~LLVL 561 (902)
.++ +.... ........ ...+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 443 11100 00001111 11112222 346999999
Q ss_pred ccch-hhh-h---hhhhcCCCCC-CCCCcEEEE--EcccC--CcccccCcceeEEecccCHHHHHHHHHHHhcCcccCCC
Q 047071 562 DDVW-EQI-N---LQEVGIPDPS-SENVGKIVV--ASRTV--GACLEMDASKLIEVETVSKKEAWELFYEQVGRVIELPH 631 (902)
Q Consensus 562 DDV~-d~~-~---~~~L~~~l~~-~~~GSkIIV--TTR~~--~va~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~ 631 (902)
||+. -+. . ++.+.....- ......|.. |.+.. .+.........+.|.||+..+...|.....+. ....
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~--~~~~ 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC--TKLL 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC--cccc
Confidence 9994 221 1 2222221110 000112222 22221 11222234578999999999999999888864 2334
Q ss_pred CcchHHHHHHHhCCCcchhhhhccccccc------chhhhhhHhhHhhhhhccccc-hHHHHHHhhhccccCCchhHHHH
Q 047071 632 IQPFAQTIVYGCGGLPLLIIVTGRALTEE------NNVLVWEHTSKLFSKSIANAT-IEEVIQLLKFSFDQLKDFDTKSC 704 (902)
Q Consensus 632 l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~------~~~~~W~~~l~~l~~~~~~~~-~~~v~~iL~lSYd~Lp~~~lK~c 704 (902)
..+....|.++..|+|+.+..+-..|..+ .+...|..-...+. ..+ .+.+...+..-.+.||. ..++.
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~~~vv~~l~~rl~kL~~-~t~~V 313 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATTDAVVEFLAARLQKLPG-TTREV 313 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----CchhhHHHHHHHHHHHhcCCH-HHHHH
Confidence 46778999999999999999888777663 34445544222211 111 23356668888999999 89999
Q ss_pred HHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHHHHHhcccccccc------CCCcc---cchHHHHHHH
Q 047071 705 LLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIIDILVGASLLQVTE------AGDSI---KMHDLIRDLA 775 (902)
Q Consensus 705 fL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~~------~~~~y---~MHdLVrdla 775 (902)
+...|++...++ .+.|...+ ......++...++.|....++-.++ ..... ..|+++++.|
T Consensus 314 l~~AA~iG~~F~--l~~La~l~---------~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaa 382 (849)
T COG3899 314 LKAAACIGNRFD--LDTLAALA---------EDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAA 382 (849)
T ss_pred HHHHHHhCccCC--HHHHHHHH---------hhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHH
Confidence 999999876554 33333332 1234566666677776666554221 11222 5789988888
Q ss_pred HHHhc
Q 047071 776 LGILS 780 (902)
Q Consensus 776 ~~i~~ 780 (902)
-....
T Consensus 383 Y~~i~ 387 (849)
T COG3899 383 YNLIP 387 (849)
T ss_pred hccCc
Confidence 66554
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=98.44 E-value=5.9e-07 Score=95.77 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=91.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
..+.+.|+|++|+|||+|++.+++... .....+.|++..... .... .+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-
Confidence 345789999999999999999998763 223345677653210 0000 1111222
Q ss_pred ceeEEEEccchhh---hhhhh-hcCCCCC-CCCCcEEEEE-ccc---------CCcccccCcceeEEecccCHHHHHHHH
Q 047071 555 KKFLLLLDDVWEQ---INLQE-VGIPDPS-SENVGKIVVA-SRT---------VGACLEMDASKLIEVETVSKKEAWELF 619 (902)
Q Consensus 555 kr~LLVLDDV~d~---~~~~~-L~~~l~~-~~~GSkIIVT-TR~---------~~va~~~~~~~~~~L~~Ls~ees~~LF 619 (902)
+.-+|||||++.. .+|+. +...+.. ...|..+||+ +.. +.+...+.....+++++++.++.+.++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 2358999999863 34542 2222221 1235556554 443 233444455678999999999999999
Q ss_pred HHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 620 YEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 620 ~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
.+.+... .-.-.+++..-|++.+.|..-.+..
T Consensus 171 ~~~a~~~-~l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 171 QRNAYQR-GIELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHH
Confidence 9888752 2223356677788888776655443
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.42 E-value=1.2e-06 Score=101.35 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=105.6
Q ss_pred CccccchHHHHHH---HHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 454 LFVSRSTERTVLK---ILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 454 ~~~~VGRe~ele~---L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
...+||++..+.. |..++.......+.|+|++|+||||||+.+++.. ...| +.++........++.++.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ii~- 82 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLREVIE- 82 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHHHHH-
Confidence 4557898888666 8888877777788999999999999999998865 3333 222211111111122221
Q ss_pred cCcCCCCCCcchhhHHHHHhh-hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEE--cccCCcc---cccCcc
Q 047071 531 LPLYCEDSEADSDVAEKLFHF-LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVA--SRTVGAC---LEMDAS 602 (902)
Q Consensus 531 L~~~~~~~~~~~~l~~~L~~~-L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVT--TR~~~va---~~~~~~ 602 (902)
..... ..+++.+|+||+++.. .+.+.+...+. .|..++|. |.+.... ......
T Consensus 83 ----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 83 ----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred ----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccc
Confidence 11111 2457889999999865 33444443332 34555553 3332211 111234
Q ss_pred eeEEecccCHHHHHHHHHHHhcCc-ccC-CCCcchHHHHHHHhCCCcchhhhh
Q 047071 603 KLIEVETVSKKEAWELFYEQVGRV-IEL-PHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 603 ~~~~L~~Ls~ees~~LF~~~af~~-~~~-~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
..+.+.+++.++...++...+... ... .-..+....|++.|+|.+..+..+
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 678999999999999998865431 111 233456788999999988755433
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.40 E-value=1.7e-06 Score=96.50 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=98.3
Q ss_pred HHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHH
Q 047071 467 ILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAE 546 (902)
Q Consensus 467 L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~ 546 (902)
|..++..+.+.-.-+||++|+||||||+.+.... ...|. .++...+-.+-++.+++
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~--~~~f~-----~~sAv~~gvkdlr~i~e----------------- 94 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT--NAAFE-----ALSAVTSGVKDLREIIE----------------- 94 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh--CCceE-----EeccccccHHHHHHHHH-----------------
Confidence 4445555778888899999999999999998765 44442 22322222222222222
Q ss_pred HH-HhhhcCceeEEEEccchh--hhhhhhhcCCCCCCCCCcEEEE--EcccCCcc---cccCcceeEEecccCHHHHHHH
Q 047071 547 KL-FHFLNGKKFLLLLDDVWE--QINLQEVGIPDPSSENVGKIVV--ASRTVGAC---LEMDASKLIEVETVSKKEAWEL 618 (902)
Q Consensus 547 ~L-~~~L~~kr~LLVLDDV~d--~~~~~~L~~~l~~~~~GSkIIV--TTR~~~va---~~~~~~~~~~L~~Ls~ees~~L 618 (902)
.- +....+++.+|.+|.|.. ..+-+.| +|...+|.-|+| ||.|+... .......++.+++|+.++-..+
T Consensus 95 ~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~ 171 (436)
T COG2256 95 EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKL 171 (436)
T ss_pred HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHH
Confidence 12 223458999999999974 3445555 455677888887 66665542 1234568999999999999999
Q ss_pred HHHHhcC-----cccCCCC-cchHHHHHHHhCCCcc
Q 047071 619 FYEQVGR-----VIELPHI-QPFAQTIVYGCGGLPL 648 (902)
Q Consensus 619 F~~~af~-----~~~~~~l-~~ia~~Ia~~c~GlPL 648 (902)
+.+.+-. ......+ ++.-..|+..++|---
T Consensus 172 l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 172 LKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 9884432 1111222 3456678888888653
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.39 E-value=9.8e-07 Score=93.09 Aligned_cols=168 Identities=16% Similarity=0.111 Sum_probs=99.9
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCC
Q 047071 459 STERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDS 538 (902)
Q Consensus 459 GRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~ 538 (902)
+.+..++.+.+++.......+.|+|++|+|||+||+.+++... ......+++++..-.+. ...
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~---~~~------------ 83 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQA---DPE------------ 83 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHh---HHH------------
Confidence 3456677777776555667899999999999999999987652 22334556654432110 001
Q ss_pred CcchhhHHHHHhhhcCceeEEEEccchhhh---hhh-hhcCCCCC-CCCCcEEEEEcccCCc---------ccccCccee
Q 047071 539 EADSDVAEKLFHFLNGKKFLLLLDDVWEQI---NLQ-EVGIPDPS-SENVGKIVVASRTVGA---------CLEMDASKL 604 (902)
Q Consensus 539 ~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~---~~~-~L~~~l~~-~~~GSkIIVTTR~~~v---------a~~~~~~~~ 604 (902)
+...+.+ .-+|||||++... .|. .+...+.. ...+..+|+||+.... ...+.....
T Consensus 84 ---------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 84 ---------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ---------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 1111222 2489999998653 222 23222211 1233478888875321 111222457
Q ss_pred EEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhc
Q 047071 605 IEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTG 654 (902)
Q Consensus 605 ~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg 654 (902)
+++.+++.++-..++...+.. ..-+-..+....|++.+.|+|..+.-+.
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~-~~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAAR-RGLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 899999999989888765432 1112234566777788888887665543
No 18
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=6.3e-07 Score=86.62 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=81.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGK 555 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~k 555 (902)
.+++.|.|+.|+|||||+++++++.. ....++|++..+....... +.+ ....+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccC
Confidence 46899999999999999999987763 3355677765554321100 000 223333334447
Q ss_pred eeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcccc------cCcceeEEecccCHHHH
Q 047071 556 KFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLE------MDASKLIEVETVSKKEA 615 (902)
Q Consensus 556 r~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~------~~~~~~~~L~~Ls~ees 615 (902)
+.+|+||++....+|......+.+..+..+|++|+.+...... .+....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8899999999988888876666655567899999987655321 23345689999988764
No 19
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.36 E-value=3e-06 Score=81.15 Aligned_cols=123 Identities=13% Similarity=-0.010 Sum_probs=73.7
Q ss_pred cchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCC
Q 047071 458 RSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCED 537 (902)
Q Consensus 458 VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~ 537 (902)
+|++..++.+...+.....+.+.|+|++|+|||+|++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 47889999999998776677899999999999999999998763 222345566544433222111111000
Q ss_pred CCcchhhHHHHHhhhcCceeEEEEccchhh-----hhhhhhcCCCCCC---CCCcEEEEEcccCC
Q 047071 538 SEADSDVAEKLFHFLNGKKFLLLLDDVWEQ-----INLQEVGIPDPSS---ENVGKIVVASRTVG 594 (902)
Q Consensus 538 ~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~-----~~~~~L~~~l~~~---~~GSkIIVTTR~~~ 594 (902)
............++.+||+||++.. ..+..+...+... ..+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999843 2233332222221 35678888887654
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=3.2e-06 Score=94.58 Aligned_cols=194 Identities=12% Similarity=0.064 Sum_probs=106.7
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccccccc-EEEEeeccccCcH-HHHHH---HHHH
Q 047071 455 FVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFD-VIILVTVSRYWSV-RKIQN---DVLR 529 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd-~i~WV~vs~~~~~-~~ll~---~Il~ 529 (902)
..++|++..++.|.+++..+..+.+.++|++|+||||+|+.+++... ...+. ..+++++++..+. ...+. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRFAH 93 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcchhh
Confidence 45689999999999999877766788999999999999999987653 12221 2344443321100 00000 0000
Q ss_pred hcCcCCCCCCcchhhHHHHH-hh-----hcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Ccccc-c
Q 047071 530 QLPLYCEDSEADSDVAEKLF-HF-----LNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GACLE-M 599 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~-~~-----L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va~~-~ 599 (902)
.+...........+....+. .. +.+.+-+|||||++... ....+...+......+++|+|+.+. .+... .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~ 173 (337)
T PRK12402 94 FLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIR 173 (337)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhc
Confidence 00000000001111122111 11 12345589999997542 2333332222233456777776543 22211 1
Q ss_pred CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 600 DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 600 ~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
.....+.+.+++.++...++...+... ...-..+....|++.++|.+-.+
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~-~~~~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAE-GVDYDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 234578899999999988888766431 11233567888999998876543
No 21
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1e-06 Score=84.55 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=80.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccc---cccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKL---IFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF 551 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~---~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~ 551 (902)
+.+++.|+|.+|+|||++++.+++...-.. .-..++|+++....+...+...++.+++.......+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346889999999999999999987652100 03456799988888999999999999998876655677777888888
Q ss_pred hcCce-eEEEEccchhh-h--hhhhhcCCCCCCCCCcEEEEEccc
Q 047071 552 LNGKK-FLLLLDDVWEQ-I--NLQEVGIPDPSSENVGKIVVASRT 592 (902)
Q Consensus 552 L~~kr-~LLVLDDV~d~-~--~~~~L~~~l~~~~~GSkIIVTTR~ 592 (902)
+...+ .+||||+++.. . .++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 86554 59999999876 2 2333322222 556677777664
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.3e-05 Score=96.85 Aligned_cols=193 Identities=10% Similarity=0.064 Sum_probs=112.8
Q ss_pred cCCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 452 FGLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
..+..+||.+..++.|.+++..+.+ ..+.++|+.|+||||+|+.+.+.......++. ..+........|...
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~~G 85 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREIDEG 85 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHhcC
Confidence 3455679999999999999987654 46689999999999999988765532111100 011111111111110
Q ss_pred c-----CcCCCCCCcchhhHHHHHhh----hcCceeEEEEccchhhhh--hhhhcCCCCCCCCCcEEEEEcccC-Ccc-c
Q 047071 531 L-----PLYCEDSEADSDVAEKLFHF----LNGKKFLLLLDDVWEQIN--LQEVGIPDPSSENVGKIVVASRTV-GAC-L 597 (902)
Q Consensus 531 L-----~~~~~~~~~~~~l~~~L~~~----L~~kr~LLVLDDV~d~~~--~~~L~~~l~~~~~GSkIIVTTR~~-~va-~ 597 (902)
- ..........++....+... ..++.-++|||+++.... +..|+..+.......++|++|.+. .+. .
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 0 00000011122222222211 134556899999987643 666655444444567777777664 332 2
Q ss_pred ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc-hhhh
Q 047071 598 EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL-LIIV 652 (902)
Q Consensus 598 ~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL-AL~v 652 (902)
.......+++++++.++..+.+...+... .-.-..+..+.|++.++|..- ++..
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEE-RIAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22345789999999999999998877541 112234567889999998763 4444
No 23
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.1e-05 Score=87.12 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=118.2
Q ss_pred cccCCccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHH
Q 047071 450 HEFGLFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQN 525 (902)
Q Consensus 450 ~~~~~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~ 525 (902)
+.+-++.+.+|+.+++++...|.. ..+.-+.|+|..|.|||+.++.+++.......=...++|++-...++.+++.
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 344455579999999999998853 3344489999999999999999998774322212278999999999999999
Q ss_pred HHHHhcCcCCCCCCcchhhHHHHHhhhc--CceeEEEEccchhhhhh--hhhcCCCCCCC-CCcEEEE--EcccCC----
Q 047071 526 DVLRQLPLYCEDSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQINL--QEVGIPDPSSE-NVGKIVV--ASRTVG---- 594 (902)
Q Consensus 526 ~Il~~L~~~~~~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~~~--~~L~~~l~~~~-~GSkIIV--TTR~~~---- 594 (902)
.|+++++..........+....+.+.+. ++.+++|||+++....- +-+...+.... ..++|++ .+-+..
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999997554444566677777777774 58899999999865322 22221121111 1454443 232222
Q ss_pred ----cccccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 595 ----ACLEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 595 ----va~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
+...++... +...|-+.+|-...+..++-.
T Consensus 172 ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 172 LDPRVKSSLGPSE-IVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred hhhhhhhccCcce-eeeCCCCHHHHHHHHHHHHHh
Confidence 222233333 778888999999888877643
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.20 E-value=1.4e-05 Score=88.77 Aligned_cols=179 Identities=11% Similarity=0.033 Sum_probs=103.9
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccE-EEEeeccccCcHHHHHHHHHHhcCc
Q 047071 455 FVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDV-IILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~-i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
..++|++..++.+..++.....+.+.|+|+.|+||||+|+.+++..... .+.. .+-++.+...... ...+.+..+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~-~~~~~i~~~~~ 94 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRENFLELNASDERGID-VIRNKIKEFAR 94 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccccceEEeccccccchH-HHHHHHHHHHh
Confidence 4568999999999999987766778999999999999999998765211 1211 1111222221111 11111111100
Q ss_pred CCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Ccccc-cCcceeEEecc
Q 047071 534 YCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GACLE-MDASKLIEVET 609 (902)
Q Consensus 534 ~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va~~-~~~~~~~~L~~ 609 (902)
..+ .....+-++++|+++... ....+...+......+.+|+++... .+... ......+++.+
T Consensus 95 ~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 95 TAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred cCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 000 001235689999986442 2333433333333456677766432 22111 12234689999
Q ss_pred cCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 610 VSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 610 Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
++.++....+...+... ...-..+....+++.++|.+--+
T Consensus 161 l~~~ei~~~l~~~~~~~-~~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 161 LKKEAVAERLRYIAENE-GIEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 99999988888776541 11223457888999999887543
No 25
>PLN03025 replication factor C subunit; Provisional
Probab=98.19 E-value=1.1e-05 Score=90.42 Aligned_cols=179 Identities=14% Similarity=0.133 Sum_probs=104.2
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccccccc-EEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFD-VIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd-~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|.+..++.|..++..+..+-+.++|++|+||||+|..+++... ...|. ..+-++.+...+.. ..+++++.+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 345689999899998888777667788999999999999999987652 12221 12222223222222 2222222111
Q ss_pred cCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Ccccc-cCcceeEEec
Q 047071 533 LYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GACLE-MDASKLIEVE 608 (902)
Q Consensus 533 ~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va~~-~~~~~~~~L~ 608 (902)
..... .-.++.-++|||+++... ....+...+......+++|+++... .+... ......++++
T Consensus 90 ~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 90 QKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred hcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 00000 002356799999998652 2233322222233456677666442 22211 1224578999
Q ss_pred ccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 609 TVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 609 ~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
+++.++....+...+... ...-..+....|++.++|..-
T Consensus 157 ~l~~~~l~~~L~~i~~~e-gi~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAE-KVPYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred CCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHH
Confidence 999999998888776541 112224567888888888653
No 26
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=2.9e-06 Score=95.30 Aligned_cols=289 Identities=16% Similarity=0.129 Sum_probs=185.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccc-cEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIF-DVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F-d~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
..+.+.++|.|||||||++-.+.. . +.-| +.++++.+..-.+...+.-.+...++..... .+.....+...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~--~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A--ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H--hhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 457899999999999999999977 3 5667 5666777766667777777777767665532 2334445667778
Q ss_pred CceeEEEEccchhhhh-hhhhcCCCCCCCCCcEEEEEcccCCcccccCcceeEEecccCHH-HHHHHHHHHhcC----cc
Q 047071 554 GKKFLLLLDDVWEQIN-LQEVGIPDPSSENVGKIVVASRTVGACLEMDASKLIEVETVSKK-EAWELFYEQVGR----VI 627 (902)
Q Consensus 554 ~kr~LLVLDDV~d~~~-~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~~~~~~~L~~Ls~e-es~~LF~~~af~----~~ 627 (902)
++|.++|+||.....+ -..+...+-.+.+.-.|+.|+|..-.. .......+.+|+.. ++.++|...+.. -.
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 9999999999876532 111222222233445688888875432 23456677777765 788998877654 11
Q ss_pred cCCCCcchHHHHHHHhCCCcchhhhhcccccccchhh---hhhHhhHhhhhhcc--ccchHHHHHHhhhccccCCchhHH
Q 047071 628 ELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVL---VWEHTSKLFSKSIA--NATIEEVIQLLKFSFDQLKDFDTK 702 (902)
Q Consensus 628 ~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~---~W~~~l~~l~~~~~--~~~~~~v~~iL~lSYd~Lp~~~lK 702 (902)
-..........|.+..+|.|+++...++..+.-.... ....-...+..... ..........+..||.-|.. -.+
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we~ 242 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WER 242 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HHH
Confidence 1233456788999999999999999998877632111 11111111221111 11145677888999999988 788
Q ss_pred HHHHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHHHHHhcccccccc--CCCcccchHHHHHHHHHHhc
Q 047071 703 SCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIIDILVGASLLQVTE--AGDSIKMHDLIRDLALGILS 780 (902)
Q Consensus 703 ~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~~--~~~~y~MHdLVrdla~~i~~ 780 (902)
..|.-++.|...+.... ..|.+.|-. ...+.......+..|++.+++-..+ ....|+.-+-.+.|+.....
T Consensus 243 ~~~~rLa~~~g~f~~~l----~~~~a~g~~---~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 243 ALFGRLAVFVGGFDLGL----ALAVAAGAD---VDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHhcchhhhhhhhcccH----HHHHhcCCc---cccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88999999987764432 223232211 1113345556677889999876543 34456766777777766555
No 27
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=2.5e-05 Score=87.14 Aligned_cols=175 Identities=12% Similarity=0.080 Sum_probs=113.8
Q ss_pred ccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcc----cccccccEEEEeec-cccCcHHHHHHHHH
Q 047071 455 FVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYP----KTKLIFDVIILVTV-SRYWSVRKIQNDVL 528 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~----~vr~~Fd~i~WV~v-s~~~~~~~ll~~Il 528 (902)
.+++|-+..++.+.+.+..+.. ....++|+.|+||||+|+.+++.. ....|.|...|... +....+.+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4568999999999999977554 577899999999999999988743 12456666556542 22233333 22233
Q ss_pred HhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchh--hhhhhhhcCCCCCCCCCcEEEEEcccCCcc-c-ccCccee
Q 047071 529 RQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWE--QINLQEVGIPDPSSENVGKIVVASRTVGAC-L-EMDASKL 604 (902)
Q Consensus 529 ~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d--~~~~~~L~~~l~~~~~GSkIIVTTR~~~va-~-~~~~~~~ 604 (902)
+.+... -..+++-++|+|+++. ...+..+...+.....++.+|++|.+.... . .......
T Consensus 83 ~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 322211 1124555677777654 455788877777767788888888654322 1 1223578
Q ss_pred EEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 605 IEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 605 ~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
+++.++++++....+.....+ ...+.+..++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999998877655422 113346788999999986554
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.5e-06 Score=100.85 Aligned_cols=193 Identities=10% Similarity=-0.028 Sum_probs=112.2
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
..+.++|-+..++.|.+++..+.+ ..+.++|++|+||||+|+.+++.......+...+|.|.+... +......-+..+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEe
Confidence 345679999999999999887655 456999999999999999998776422223333444321100 000000000000
Q ss_pred CcCCCCCCcchhhHHHHHhhh-----cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcc-cCCcccc-cCcc
Q 047071 532 PLYCEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASR-TVGACLE-MDAS 602 (902)
Q Consensus 532 ~~~~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR-~~~va~~-~~~~ 602 (902)
... .....+. +..+.+.+ .+++-++|||+++.. ..+..+...+........+|++|. ...+... ....
T Consensus 91 ~~~--~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 91 DAA--SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred ccc--ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 100 0111111 12222222 346679999999754 346666555544444555555554 3333222 2335
Q ss_pred eeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 603 KLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 603 ~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
..+++.+++.++....+...+.... ..-..+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~eg-i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEG-REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 6899999999999999988765411 1223456788999999988544
No 29
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.13 E-value=8.6e-06 Score=98.67 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=108.1
Q ss_pred cccCCccccchHHHHHHHHHhhcC----C-CceEEEEecCCCCChhhHHHHHhhcccc---ccccc--EEEEeeccccCc
Q 047071 450 HEFGLFVSRSTERTVLKILQCISG----V-EAGKIGIHGISGIGKTTVLKALISYPKT---KLIFD--VIILVTVSRYWS 519 (902)
Q Consensus 450 ~~~~~~~~VGRe~ele~L~~~L~~----~-~~~VI~IvG~GGVGKTTLA~~vy~d~~v---r~~Fd--~i~WV~vs~~~~ 519 (902)
+.+.++.+.||+.++++|..+|.. . ...++.|+|++|.|||++++.|.+.... +.... .+++|++..-.+
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 344556679999999999998853 2 3357789999999999999999876521 11111 356787777778
Q ss_pred HHHHHHHHHHhcCcCC-CCCCcchhhHHHHHhhhc---CceeEEEEccchhhh-----hhhhhcCCCCCCCCCcEEEE--
Q 047071 520 VRKIQNDVLRQLPLYC-EDSEADSDVAEKLFHFLN---GKKFLLLLDDVWEQI-----NLQEVGIPDPSSENVGKIVV-- 588 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~-~~~~~~~~l~~~L~~~L~---~kr~LLVLDDV~d~~-----~~~~L~~~l~~~~~GSkIIV-- 588 (902)
...++..|..++.... ............+...+. ....+||||+++... .+-.|... + ...+++|+|
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIG 907 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEE
Confidence 8888888888884433 222233344555555542 234599999997542 12222111 1 123455544
Q ss_pred EcccCC--------cccccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 589 ASRTVG--------ACLEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 589 TTR~~~--------va~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
+|.+-. +...++ ...+...|++.++-.+++..++..
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 332211 112222 234667999999999999988764
No 30
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.13 E-value=5.3e-06 Score=84.18 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHhhc---CCCceEEEEecCCCCChhhHHHHHhhccccc
Q 047071 457 SRSTERTVLKILQCIS---GVEAGKIGIHGISGIGKTTVLKALISYPKTK 503 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~---~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr 503 (902)
+|||+.++++|...|. ....+.+.|+|++|+|||+|.++++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999992 3467899999999999999999998877544
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=2.4e-06 Score=71.54 Aligned_cols=59 Identities=27% Similarity=0.409 Sum_probs=53.8
Q ss_pred cccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 836 EQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 836 ~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
++|++|++.+|.+..+|.. ..+++|++|+|+ ++.++.+|+..|.+|++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688999999999999976 889999999999 7789999987799999999999999975
No 32
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.10 E-value=2.9e-05 Score=94.20 Aligned_cols=202 Identities=12% Similarity=0.080 Sum_probs=116.5
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccc---cEEEEeeccc---cCcHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIF---DVIILVTVSR---YWSVRKIQNDV 527 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F---d~i~WV~vs~---~~~~~~ll~~I 527 (902)
...++|++..+..+.+.+.......+.|+|++|+||||||+.+++.......+ ...-|+.+.. ..+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 34579999999999888876667789999999999999999998765333222 1123443321 11222221111
Q ss_pred ---------------HHhcCcCC----------------CCCCc-chhhHHHHHhhhcCceeEEEEccchhh--hhhhhh
Q 047071 528 ---------------LRQLPLYC----------------EDSEA-DSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEV 573 (902)
Q Consensus 528 ---------------l~~L~~~~----------------~~~~~-~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L 573 (902)
+...+... ..... ....+..+.+.+.+++++++.|+.|.. ..|..+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11111100 00111 123456777778888888887766543 346666
Q ss_pred cCCCCCCCCCcEEEE--EcccCCcc-cc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 574 GIPDPSSENVGKIVV--ASRTVGAC-LE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 574 ~~~l~~~~~GSkIIV--TTR~~~va-~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
...+....+...|+| ||++.... .. ......+.+.+++.+|.+.++...+.... ..-..++...|++.+..-+-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls~eal~~L~~ys~~gRra 391 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLAAGVEELIARYTIEGRKA 391 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHCCCcHHHH
Confidence 655555555555555 56644321 11 11234678999999999999998775411 111234445555555444556
Q ss_pred hhhhccc
Q 047071 650 IIVTGRA 656 (902)
Q Consensus 650 L~vlg~~ 656 (902)
++.++..
T Consensus 392 ln~L~~~ 398 (615)
T TIGR02903 392 VNILADV 398 (615)
T ss_pred HHHHHHH
Confidence 6655433
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3e-05 Score=88.42 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=107.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....++|-+..++.+.+.+..+.+ ..+.++|+.|+||||+|+.+++.......+. ..++.......++....
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGL 86 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCC
Confidence 345679999999999999877554 5678999999999999999987653111110 00000001111111110
Q ss_pred CcCC-----CCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Ccccc
Q 047071 532 PLYC-----EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GACLE 598 (902)
Q Consensus 532 ~~~~-----~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va~~ 598 (902)
.... ......++ ...+.+.+ .+++-++|+|+++... .++.+...+.......++|++|.+. .+...
T Consensus 87 ~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 87 CLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0000 00001111 11222221 2455699999998654 3556655554444566677666442 33221
Q ss_pred -cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 599 -MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 599 -~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
.+....+++.+++.++....+...+... ...-..+.+..|++.++|.|-.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~-g~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKE-SIDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHH
Confidence 2234688999999999998887766431 1122345677899999998854
No 34
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.07 E-value=1.8e-05 Score=86.94 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=92.4
Q ss_pred HHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHH
Q 047071 467 ILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAE 546 (902)
Q Consensus 467 L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~ 546 (902)
|.+++.++.+.-+.+||++|+||||||+.+.+...... ..||..+....-..-.+.++++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~------------- 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN------------- 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------
Confidence 45566668888999999999999999999988764332 5577766554434444444443211
Q ss_pred HHHhhhcCceeEEEEccchh--hhhhhhhcCCCCCCCCCcEEEE--EcccCCcc---cccCcceeEEecccCHHHHHHHH
Q 047071 547 KLFHFLNGKKFLLLLDDVWE--QINLQEVGIPDPSSENVGKIVV--ASRTVGAC---LEMDASKLIEVETVSKKEAWELF 619 (902)
Q Consensus 547 ~L~~~L~~kr~LLVLDDV~d--~~~~~~L~~~l~~~~~GSkIIV--TTR~~~va---~~~~~~~~~~L~~Ls~ees~~LF 619 (902)
...+.++|.+|.+|.|.. ..+-+.| +|...+|+-++| ||.++... ..+....++.|++|..++...++
T Consensus 216 --~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 216 --EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred --HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 124567899999999964 3344443 566778887777 67666542 22345678999999999999988
Q ss_pred HHH
Q 047071 620 YEQ 622 (902)
Q Consensus 620 ~~~ 622 (902)
.+.
T Consensus 291 ~ra 293 (554)
T KOG2028|consen 291 MRA 293 (554)
T ss_pred HHH
Confidence 773
No 35
>PRK04195 replication factor C large subunit; Provisional
Probab=98.06 E-value=2.4e-05 Score=92.47 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=106.1
Q ss_pred CccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
...++|.+..++.|.+++.. ...+.+.|+|++|+||||+|+.+++... |+. +-++.+...+. ..+..++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccH-HHHHHHHH
Confidence 34579999999999999854 2267899999999999999999998762 332 23344432222 22333332
Q ss_pred hcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh------hhhhcCCCCCCCCCcEEEEEcccCC-ccc--ccC
Q 047071 530 QLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN------LQEVGIPDPSSENVGKIVVASRTVG-ACL--EMD 600 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~------~~~L~~~l~~~~~GSkIIVTTR~~~-va~--~~~ 600 (902)
...... .....++-+||||+++.... +..+...+. ..+..||+|+.+.. ... .-.
T Consensus 87 ~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhc
Confidence 211110 00113678999999976421 334432222 12334666664432 111 112
Q ss_pred cceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 601 ASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 601 ~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
....+.+.+++.++....+...+... ...-..+....|++.++|..-.+.
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~e-gi~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKE-GIECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 35678999999999988888776541 112234678899999998765443
No 36
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.06 E-value=4.7e-06 Score=89.91 Aligned_cols=92 Identities=22% Similarity=0.201 Sum_probs=63.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc--CcHHHHHHHHHHhcCcCCCCCCcch------hhHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY--WSVRKIQNDVLRQLPLYCEDSEADS------DVAE 546 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~--~~~~~ll~~Il~~L~~~~~~~~~~~------~l~~ 546 (902)
.-..++|+|++|+|||||++.++++.... +|+.++|+.+... .++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44689999999999999999999988644 8999999997766 7899999999443322221110111 1112
Q ss_pred HHHhh-hcCceeEEEEccchhh
Q 047071 547 KLFHF-LNGKKFLLLLDDVWEQ 567 (902)
Q Consensus 547 ~L~~~-L~~kr~LLVLDDV~d~ 567 (902)
..... -.+++.+|++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22221 2479999999999654
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=2.7e-05 Score=95.70 Aligned_cols=189 Identities=10% Similarity=0.053 Sum_probs=109.2
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhcccccccccE-EEEeeccccCcHHHHHHHHHHh
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLIFDV-IILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~-i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
.+..+||-+..+..|.+++..+.+. .+.++|+.|+||||+|+.+++.......... -|..| .....+...
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C--------~sC~~i~~g 85 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC--------SSCVEIAQG 85 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc--------hHHHHHhcC
Confidence 4456799999999999999876665 4589999999999999999876632111110 00000 000000000
Q ss_pred cC-----cCCCCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCccc
Q 047071 531 LP-----LYCEDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGACL 597 (902)
Q Consensus 531 L~-----~~~~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va~ 597 (902)
.. .........++. +.+.+. ..+++-++|||+++.. ..++.|+..+-......++|++|.+ ..+..
T Consensus 86 ~~~DviEidAas~~kVDdI-ReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 86 RFVDLIEVDAASRTKVDDT-RELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence 00 000000011111 112111 2466779999999865 3455554444433445566655544 44432
Q ss_pred c-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 598 E-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 598 ~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
. ......|++++|+.++....+...+.. ..-.-..+....|++.++|.|--+.
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~-EgI~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQ-EQLPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 1 223578999999999999888876643 1112234567889999999886433
No 38
>PTZ00202 tuzin; Provisional
Probab=98.05 E-value=2.5e-05 Score=88.84 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHhhcccCCcc-ccc--cCCccccchHHHHHHHHHhhcC---CCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 428 EMPLVVKAEAEISSKTETDQW-WHE--FGLFVSRSTERTVLKILQCISG---VEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 428 e~~~i~~~~~~is~~~~~~~~-~~~--~~~~~~VGRe~ele~L~~~L~~---~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.--+++-.+...++..+..+. ... ......+||+.++..|...|.+ ...+++.|+|++|+|||||++.+.....
T Consensus 232 R~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 232 RSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred hHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 333455555565555443221 111 2233459999999999999964 2356899999999999999999986652
Q ss_pred ccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-----c-CceeEEEEccchhhhhhhhhc-
Q 047071 502 TKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-----N-GKKFLLLLDDVWEQINLQEVG- 574 (902)
Q Consensus 502 vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-----~-~kr~LLVLDDV~d~~~~~~L~- 574 (902)
+ ..++++.. +..+++..++.+|+.+.. ....++...|.+.+ . +++.+||+--= +-+.+..+.
T Consensus 312 ----~-~qL~vNpr---g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyn 380 (550)
T PTZ00202 312 ----M-PAVFVDVR---GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYN 380 (550)
T ss_pred ----c-eEEEECCC---CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHH
Confidence 1 23333333 679999999999997432 12344555555443 2 66777777422 111111111
Q ss_pred --CCCCCCCCCcEEEEEcccCCccc---ccCcceeEEecccCHHHHHHHHHH
Q 047071 575 --IPDPSSENVGKIVVASRTVGACL---EMDASKLIEVETVSKKEAWELFYE 621 (902)
Q Consensus 575 --~~l~~~~~GSkIIVTTR~~~va~---~~~~~~~~~L~~Ls~ees~~LF~~ 621 (902)
..+.+...-|.|++----+.+.. ....-..|-+.+++.++|...-..
T Consensus 381 e~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 381 EVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 11222233455665433322211 112235688899999988776544
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.05 E-value=5.4e-05 Score=86.29 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=100.2
Q ss_pred cCCccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 452 FGLFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
.....+.|++..+++|.+.+.. ..++-+.|+|++|+|||+||+.+++.. ...| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch--
Confidence 3345569999999999887631 134568999999999999999999876 3333 21111
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhh----------------hhhhhcCCCCC--
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQI----------------NLQEVGIPDPS-- 579 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~----------------~~~~L~~~l~~-- 579 (902)
..+..... + ........+.+.. ...+.+|+||+++... .+..+...+..
T Consensus 190 --~~l~~~~~---g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SELVRKYI---G-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHHHHHhh---h-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 11111110 0 1111122222222 3467899999987531 12222221211
Q ss_pred CCCCcEEEEEcccCCc-----ccccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 580 SENVGKIVVASRTVGA-----CLEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 580 ~~~GSkIIVTTR~~~v-----a~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
...+.+||.||..... .........+.+...+.++..++|...+......+. .....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED--VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc--CCHHHHHHHcCCCC
Confidence 1235678888875432 111122457899999999999999988765221111 12567778887754
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=3e-05 Score=92.55 Aligned_cols=197 Identities=10% Similarity=0.039 Sum_probs=110.4
Q ss_pred cCCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 452 FGLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
..+..+||-+..++.|.+.+..+.+ ..+.++|+.|+||||+|+.+.+....... +..--+ .+..+........|...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHcC
Confidence 3445679999999999999987665 45689999999999999998765531100 000000 00001101111111100
Q ss_pred c-----CcCCCCCCcchhhHHHHHhh----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEE-EcccCCcccc
Q 047071 531 L-----PLYCEDSEADSDVAEKLFHF----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVV-ASRTVGACLE 598 (902)
Q Consensus 531 L-----~~~~~~~~~~~~l~~~L~~~----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIV-TTR~~~va~~ 598 (902)
- ..........++..+.+... ..++.-++|||+++.. ..++.|+..+.......++|+ ||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0 00000011222222222221 2356679999999865 346666555544344555554 5544444321
Q ss_pred -cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 599 -MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 599 -~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
......+.++.++.++..+.+.+.+... ......+..+.|++.++|.|.-+.
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~E-gi~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEE-GIAHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2235788999999999999888776431 111223456889999999996443
No 41
>PRK09087 hypothetical protein; Validated
Probab=97.99 E-value=3.5e-05 Score=82.05 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=86.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
..+.+.|+|+.|+|||+|++.+++...+ .|++.. .+...++. .+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~---------------------~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAAN---------------------AAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHH---------------------hhhc
Confidence 3467899999999999999999876421 244221 11111111 1111
Q ss_pred ceeEEEEccchhh----hhhhhhcCCCCCCCCCcEEEEEcccC---------CcccccCcceeEEecccCHHHHHHHHHH
Q 047071 555 KKFLLLLDDVWEQ----INLQEVGIPDPSSENVGKIVVASRTV---------GACLEMDASKLIEVETVSKKEAWELFYE 621 (902)
Q Consensus 555 kr~LLVLDDV~d~----~~~~~L~~~l~~~~~GSkIIVTTR~~---------~va~~~~~~~~~~L~~Ls~ees~~LF~~ 621 (902)
-+|+|||+... ..+-.+...+ ...|..||+|++.. .+...+.....+++++++.++-..++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999532 2232222222 23366799988742 2333445668899999999999999998
Q ss_pred HhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 622 QVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 622 ~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
.+.. ..-.-.+++..-|++.+.|..-++..
T Consensus 165 ~~~~-~~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 165 LFAD-RQLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHH-cCCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 8754 12223356778888888877766554
No 42
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.97 E-value=3.5e-05 Score=82.58 Aligned_cols=161 Identities=8% Similarity=0.017 Sum_probs=94.4
Q ss_pred HHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcch
Q 047071 463 TVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADS 542 (902)
Q Consensus 463 ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~ 542 (902)
.+..+.++......+.+.|+|+.|+|||+|++.+++... ..-..+.|+++..... ...
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~ 89 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVP 89 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhH
Confidence 444455554444556889999999999999999987653 2223456665543110 000
Q ss_pred hhHHHHHhhhcCceeEEEEccchhh---hhhhhhc-CCCCC-CCCC-cEEEEEcccCCc---------ccccCcceeEEe
Q 047071 543 DVAEKLFHFLNGKKFLLLLDDVWEQ---INLQEVG-IPDPS-SENV-GKIVVASRTVGA---------CLEMDASKLIEV 607 (902)
Q Consensus 543 ~l~~~L~~~L~~kr~LLVLDDV~d~---~~~~~L~-~~l~~-~~~G-SkIIVTTR~~~v---------a~~~~~~~~~~L 607 (902)
+ +.+.+.. --+|+|||+... .+|+... ..+.. ...| .++|+||+...- ...+.....+++
T Consensus 90 ~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 90 E----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred H----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 1 1111111 248999999753 2343221 11111 1123 368999986532 223445678999
Q ss_pred cccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 608 ETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 608 ~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
++++.++-..++.+++... .-.-.+++..-|++.+.|..-.+.
T Consensus 165 ~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred cCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHH
Confidence 9999999999988766431 122335667778887777654443
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=8.2e-05 Score=87.40 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=105.9
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....+||.+.....|...+..+.+ ..+.++|++|+||||+|+.+++.......-. ..++........+...-
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~-------~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG-------VEPCNECRACRSIDEGT 84 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCCCcccHHHHHHhcCC
Confidence 345679999888888888877665 4688999999999999999976542111000 00000000000000000
Q ss_pred Cc-----CCCCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCccc-
Q 047071 532 PL-----YCEDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGACL- 597 (902)
Q Consensus 532 ~~-----~~~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va~- 597 (902)
.. ........++. ..+.+. ..+++-++|+|+++.. ...+.+...+........+|++|.+ ..+..
T Consensus 85 ~~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 85 FMDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred CCccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHH
Confidence 00 00000011111 122222 2346679999999754 3345554444333334444444433 33322
Q ss_pred ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC-cchhhhhcc
Q 047071 598 EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL-PLLIIVTGR 655 (902)
Q Consensus 598 ~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl-PLAL~vlg~ 655 (902)
.......+++.+++.++....+...+.. ....-..+....|++.++|. +.++..+-.
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~-egi~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEA-EGIEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1223568899999999988888877643 11122345678888888665 566665544
No 44
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.94 E-value=4.2e-05 Score=93.94 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=97.1
Q ss_pred ccccchHHHHH---HHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 455 FVSRSTERTVL---KILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 455 ~~~VGRe~ele---~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
+.++|.+..+. .|.+.+..+....+.|+|++|+||||||+.+++.. ...|. .++... ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~--~~~f~---~lna~~-~~i~---------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT--RAHFS---SLNAVL-AGVK---------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh--cCcce---eehhhh-hhhH----------
Confidence 45688887774 46666766777788999999999999999998765 33431 111110 0011
Q ss_pred CcCCCCCCcchhhHHHHHhhh--cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEE--cccCC--cc-cccCcc
Q 047071 532 PLYCEDSEADSDVAEKLFHFL--NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVA--SRTVG--AC-LEMDAS 602 (902)
Q Consensus 532 ~~~~~~~~~~~~l~~~L~~~L--~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVT--TR~~~--va-~~~~~~ 602 (902)
+.........+.+ .+++.+||||+++.. .+++.+...+ ..|+.++|+ |.+.. +. ......
T Consensus 92 --------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 92 --------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred --------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccc
Confidence 1111111121111 246779999999753 3455554332 345556654 33321 11 111224
Q ss_pred eeEEecccCHHHHHHHHHHHhcC------cccCCCCcchHHHHHHHhCCCc
Q 047071 603 KLIEVETVSKKEAWELFYEQVGR------VIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 603 ~~~~L~~Ls~ees~~LF~~~af~------~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
..+.+++|+.++...++...+.. .....-..+....|++.+.|..
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 57899999999999999876642 1111222455677888887764
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=6e-05 Score=90.25 Aligned_cols=190 Identities=13% Similarity=0.017 Sum_probs=109.7
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....+||.+.....|.+++..+.+ ..+.++|+.|+||||+|+.+++...... ++. ..+++.....+.+...-
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~-~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVT-STPCEVCATCKAVNEGR 85 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCC-CCCCccCHHHHHHhcCC
Confidence 445679999999999999987654 5779999999999999999976652111 110 00111111111111100
Q ss_pred CcC-----CCCCCcchhhHHHHHh----hhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Ccc-cc
Q 047071 532 PLY-----CEDSEADSDVAEKLFH----FLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GAC-LE 598 (902)
Q Consensus 532 ~~~-----~~~~~~~~~l~~~L~~----~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va-~~ 598 (902)
... .......++..+.+.. -..+++-++|||+++... ....|...+.....+.++|++|.+. .+. ..
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 000 0001112222211111 123566799999998653 4555544444434556777766553 221 11
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
......+++++++.++....+...+.. ....-..+....|++.++|.+-.+
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~k-EgI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEK-EQIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 234578999999999999888877654 112233456778999999987543
No 46
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=6e-05 Score=89.64 Aligned_cols=182 Identities=11% Similarity=0.118 Sum_probs=107.0
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccc-------------------cccEEEEe
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKL-------------------IFDVIILV 512 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~-------------------~Fd~i~WV 512 (902)
....++|-+..++.|...+..+.+ ..+.++|+.|+||||+|+.+++...-.. .|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 345679999999999999977554 4578999999999999999986442110 11111122
Q ss_pred eccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEE-
Q 047071 513 TVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVV- 588 (902)
Q Consensus 513 ~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIV- 588 (902)
+......+. +...+...+.. -..+++-++|+|+++.. ..++.|+..+......+.+|+
T Consensus 94 daas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111111111 11111111111 12356679999999754 335556555544444555554
Q ss_pred EcccCCccc-ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc-hhhhh
Q 047071 589 ASRTVGACL-EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL-LIIVT 653 (902)
Q Consensus 589 TTR~~~va~-~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL-AL~vl 653 (902)
||....+.. .......+++++++.++....+...+.. ..-.-..+....|++.++|.+- |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~-egi~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAK-ENINSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444333332 1234578999999999988887775543 1122234456788999998764 44433
No 47
>PRK08727 hypothetical protein; Validated
Probab=97.93 E-value=2.8e-05 Score=83.18 Aligned_cols=164 Identities=11% Similarity=0.029 Sum_probs=93.7
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCC
Q 047071 459 STERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDS 538 (902)
Q Consensus 459 GRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~ 538 (902)
|-...+..+..+........+.|+|..|+|||.|++.+++... .....+.|++..+. ...+.
T Consensus 24 ~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~~------~~~~~---------- 85 (233)
T PRK08727 24 APDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQAA------AGRLR---------- 85 (233)
T ss_pred CcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHHh------hhhHH----------
Confidence 3333444444443333345699999999999999999988753 22334566653321 11110
Q ss_pred CcchhhHHHHHhhhcCceeEEEEccchhhh---hhhh-hcCCCCC-CCCCcEEEEEcccCCc---------ccccCccee
Q 047071 539 EADSDVAEKLFHFLNGKKFLLLLDDVWEQI---NLQE-VGIPDPS-SENVGKIVVASRTVGA---------CLEMDASKL 604 (902)
Q Consensus 539 ~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~---~~~~-L~~~l~~-~~~GSkIIVTTR~~~v---------a~~~~~~~~ 604 (902)
. ..+.+ .+.-+|||||+.... .|.. +...+.. ..+|..||+||+...- ...+.....
T Consensus 86 ----~----~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~ 156 (233)
T PRK08727 86 ----D----ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIR 156 (233)
T ss_pred ----H----HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCce
Confidence 0 11111 123589999997432 2322 2211111 2345679999986322 122233568
Q ss_pred EEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 605 IEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 605 ~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
+++++++.++-..++.+.+... .-.-..+....|++.+.|-.-.+
T Consensus 157 ~~l~~~~~e~~~~iL~~~a~~~-~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 157 IGLPVLDDVARAAVLRERAQRR-GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred EEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCHHHH
Confidence 8999999999999999877541 12233456677777777655433
No 48
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=5.2e-05 Score=88.31 Aligned_cols=187 Identities=10% Similarity=-0.022 Sum_probs=108.2
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....+||-+..+..|..++..+.+. .+.++|+.|+||||+|+.+++.......... ..+..... ...+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITKGI 88 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHccC
Confidence 3455799999999999999877654 6899999999999999999876532111000 00011111 11111111
Q ss_pred CcCC-----CCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEE-EcccCCccc-
Q 047071 532 PLYC-----EDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVV-ASRTVGACL- 597 (902)
Q Consensus 532 ~~~~-----~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIV-TTR~~~va~- 597 (902)
.... ......++ .+.+.+. ..++.-++|||+++.. +.+..++..+........+|+ ||....+..
T Consensus 89 ~~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 89 SSDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 1100 00001111 1222222 2356679999999864 446666555543333444444 444444432
Q ss_pred ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 598 EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 598 ~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
.......|.+.+++.++....+...+... .-.-..+....|++.++|.+-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~E-gi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIE-NVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCChHH
Confidence 22335679999999999888887766431 122234567889999999984
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.87 E-value=0.00013 Score=82.32 Aligned_cols=179 Identities=12% Similarity=0.069 Sum_probs=104.9
Q ss_pred CccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhccccc--------------------ccccEEEEe
Q 047071 454 LFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTK--------------------LIFDVIILV 512 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr--------------------~~Fd~i~WV 512 (902)
...++|.+..++.|.+.+.++.. ..+.++|+.|+||||+|+.+....... .+++. .++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 44569999999999999977554 467899999999999998887654211 01221 112
Q ss_pred eccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEE
Q 047071 513 TVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVA 589 (902)
Q Consensus 513 ~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVT 589 (902)
+....... +..++++.. +.. -..+++-++|+|+++.. .....+...+......+.+|++
T Consensus 92 ~~~~~~~~-~~~~~l~~~-----------------~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 92 DAASNNGV-DDIREILDN-----------------VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eccccCCH-HHHHHHHHH-----------------HhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 11111110 011111111 111 12245568999998754 3355554444433445666666
Q ss_pred cccCC-ccc-ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 590 SRTVG-ACL-EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 590 TR~~~-va~-~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
|.+.. +.. .......+++.+++.++....+...+-.. ...-..+.+..|++.++|.|..+..
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~-g~~i~~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKE-GIKIEDEALELIARAADGSLRDALS 217 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCChHHHHH
Confidence 64432 221 11234578889999999888888766431 1122246778889999998865543
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00013 Score=86.25 Aligned_cols=192 Identities=13% Similarity=0.065 Sum_probs=109.5
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccE-EEEeeccccCcHHHHHHHHHHh
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDV-IILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~-i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
....++|-+..+..|...+..+.+ ..+.++|+.|+||||+|+.+++..-....... -.+..+ ........+...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i~~~ 94 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISFNNH 94 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHHhcC
Confidence 345569999999999887766553 57889999999999999999876532111100 000000 000001111100
Q ss_pred cCcC-----CCCCCcchhhHHHHHh----hhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEE-EcccCCcccc
Q 047071 531 LPLY-----CEDSEADSDVAEKLFH----FLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVV-ASRTVGACLE 598 (902)
Q Consensus 531 L~~~-----~~~~~~~~~l~~~L~~----~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIV-TTR~~~va~~ 598 (902)
.... .......++....+.. -+.+++-++|+|+++.. ..+..+...+....+.+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0000 0001112222222211 12356779999999864 446666655554445556554 5444444322
Q ss_pred c-CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 599 M-DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 599 ~-~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
+ .....+++.+++.++....+...+... ...-..+....|++.++|.+--
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~e-gi~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQE-NLKTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHH
Confidence 2 234678999999999999998887541 1122345677899999998743
No 51
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.84 E-value=0.00026 Score=72.90 Aligned_cols=158 Identities=10% Similarity=0.049 Sum_probs=91.9
Q ss_pred HHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhccccc--------------------ccccEEEEeecc-ccCcHHHH
Q 047071 466 KILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTK--------------------LIFDVIILVTVS-RYWSVRKI 523 (902)
Q Consensus 466 ~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr--------------------~~Fd~i~WV~vs-~~~~~~~l 523 (902)
.|.+.+..+.+ ..+.++|+.|+||||+|+.+.+..--. .+.|. .++... ..... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 45566655555 678999999999999998887654221 11111 111111 01111 11
Q ss_pred HHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Ccccc-
Q 047071 524 QNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GACLE- 598 (902)
Q Consensus 524 l~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va~~- 598 (902)
.++++.. +.. -..+.+-++|+|+++... .++.+...+......+.+|++|++. .+...
T Consensus 81 i~~i~~~-----------------~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 81 VRELVEF-----------------LSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHH-----------------HccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 1111111 111 113556789999997643 3555555554444456666666543 22211
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
......+.+.+++.++..+.+... + -..+.+..|+..++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~--g-----i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ--G-----ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc--C-----CCHHHHHHHHHHcCCCccc
Confidence 123468999999999998888776 2 1246688999999998853
No 52
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.0001 Score=89.09 Aligned_cols=191 Identities=10% Similarity=0.041 Sum_probs=109.4
Q ss_pred cCCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 452 FGLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
..+..+||-+..+..|.+.+..+.+ ..+.++|+.|+||||+|+.+++..-....+ ...++......+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcC
Confidence 3455679999999999999987665 446899999999999999997655321110 00111111222222111
Q ss_pred cCcC-----CCCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCccc
Q 047071 531 LPLY-----CEDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGACL 597 (902)
Q Consensus 531 L~~~-----~~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va~ 597 (902)
-... .......++.. .+.+. ..+++-++|||+++.. ...+.|+..+-......++|++|.+ ..+..
T Consensus 86 ~~~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000 00001122222 22222 2456779999999865 3355554444333344555554444 44432
Q ss_pred -ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 598 -EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 598 -~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
.......|++++|+.++....+...+... ...........|++.++|.+--+.
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e-~i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAE-QIPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 22335789999999999998888765321 112223456789999999886443
No 53
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00013 Score=87.95 Aligned_cols=193 Identities=12% Similarity=0.063 Sum_probs=108.0
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccc--cEEEEeeccccCcHHHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIF--DVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F--d~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
....+||-+..+..|.+++..+.+ ..+.++|+.|+||||+|+.+++..-..... ..... .+++.....+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 345679999999999999987665 567899999999999999986543211000 00000 01111111111111
Q ss_pred hcCcC-----CCCCCcchhhHHHHHh----hhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEc-ccCCcc-
Q 047071 530 QLPLY-----CEDSEADSDVAEKLFH----FLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVAS-RTVGAC- 596 (902)
Q Consensus 530 ~L~~~-----~~~~~~~~~l~~~L~~----~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTT-R~~~va- 596 (902)
.-... .......++..+.+.. -..++.-++|||+|+.. ..++.++..+.......++|++| ....+.
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 0001112222222211 01245568999999865 34666655554444455666555 333332
Q ss_pred cccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 597 LEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 597 ~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
........+++++++.++....+...+... ...-..+....|++.++|.+--+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e-gi~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAE-NVPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 222345789999999999998888776441 11223456788999999987544
No 54
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=7.1e-05 Score=86.34 Aligned_cols=196 Identities=12% Similarity=0.040 Sum_probs=109.6
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhcccccccccEEEEee-ccccCcHHHHHHHHHHh
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVT-VSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~-vs~~~~~~~ll~~Il~~ 530 (902)
....++|.+..++.|.+++.++.++ .+.++|+.|+||||+|..+++...-...+....|.. ...++..-..-+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3456799999999999999876654 588999999999999999876653211111100110 00111111111111111
Q ss_pred cCcCC-----CCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEc-ccCCccc
Q 047071 531 LPLYC-----EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVAS-RTVGACL 597 (902)
Q Consensus 531 L~~~~-----~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTT-R~~~va~ 597 (902)
..... ......++.. .+.+.+ .+++-++|+|+++... .++.+...+....+.+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 10000 0000122222 222333 3456689999998653 4666655555444566666555 3333332
Q ss_pred cc-CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 598 EM-DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 598 ~~-~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
.+ .....+++.+++.++....+...+.. ....-..+.+..|+..++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~-~g~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEA-EGISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 11 12457889999999988888776532 111233466888999999977533
No 55
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.82 E-value=2.9e-05 Score=87.85 Aligned_cols=99 Identities=21% Similarity=0.199 Sum_probs=66.8
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC--cHHHHHHHHHHhcCcCCCCCCcchh
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW--SVRKIQNDVLRQLPLYCEDSEADSD 543 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~--~~~~ll~~Il~~L~~~~~~~~~~~~ 543 (902)
+++++.. ..-...+|+|++|+||||||+.+|+..... +|+.++|+.+.+.. ++.++++.++..+-....+. ....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~-~~~~ 236 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PAER 236 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC-CHHH
Confidence 4444433 333578899999999999999999988644 89999999998887 78888888874332222111 1111
Q ss_pred hH-------HHHHhh-hcCceeEEEEccchhh
Q 047071 544 VA-------EKLFHF-LNGKKFLLLLDDVWEQ 567 (902)
Q Consensus 544 l~-------~~L~~~-L~~kr~LLVLDDV~d~ 567 (902)
.. ...... -.++++||++|++...
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11 111111 2579999999999654
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.80 E-value=1.1e-05 Score=101.07 Aligned_cols=85 Identities=26% Similarity=0.274 Sum_probs=67.2
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCC--cccCCC--CCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNE--LCTLPE--KPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~--i~~LP~--~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
+........+..++.-....+|++|-+.++. +..++. +..++.|++|||++|..+.+||++ |++|-+||||||++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 3344444445555544555578888777774 566665 377999999999999999999999 99999999999999
Q ss_pred CCCccCCCCC
Q 047071 893 TRINCLPNTF 902 (902)
Q Consensus 893 c~I~~LP~sI 902 (902)
|.|+.||.+|
T Consensus 605 t~I~~LP~~l 614 (889)
T KOG4658|consen 605 TGISHLPSGL 614 (889)
T ss_pred CCccccchHH
Confidence 9999999875
No 57
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00029 Score=80.35 Aligned_cols=193 Identities=8% Similarity=-0.060 Sum_probs=108.9
Q ss_pred CccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEE---eeccccCcHHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIIL---VTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~W---V~vs~~~~~~~ll~~Il~ 529 (902)
...++|-+...+.|.+.+..+.+ ..+.++|+.|+||+|+|..+.+..--......... .............+.+..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 34579999999999999987665 46899999999999999887654421111000000 000000000011111111
Q ss_pred hcCcCC-----C----------CCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEE
Q 047071 530 QLPLYC-----E----------DSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIV 587 (902)
Q Consensus 530 ~L~~~~-----~----------~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkII 587 (902)
-..++ . .....++ ++.+.+.+ .+.+-++|+|+++..+ ....+...+.....++.+|
T Consensus 98 -~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 98 -GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred -cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 11111 0 0011222 33334433 2566799999998653 3445544443333456666
Q ss_pred EEcccC-Cccc-ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhh
Q 047071 588 VASRTV-GACL-EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 588 VTTR~~-~va~-~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
++|.+. .+.. .......+.+.+++.++..+++...... ........++..++|.|+.+..+
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 666654 3321 1234578999999999999999876432 11122267899999999866544
No 58
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00027 Score=80.11 Aligned_cols=194 Identities=10% Similarity=0.008 Sum_probs=110.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccc--cccEEEEeeccccCcHHHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKL--IFDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~--~Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
....++|-+...+.|...+..+.. ..+.|+|+.|+||||+|..+++..--.. .+... ....++......+.+..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 345579999999999999987654 4689999999999999998876552210 01111 00111111122233322
Q ss_pred hcC-------cCC-C------CCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEE-E
Q 047071 530 QLP-------LYC-E------DSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKI-V 587 (902)
Q Consensus 530 ~L~-------~~~-~------~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkI-I 587 (902)
.-. .+. . .....++ +..+.+.+ .+++-++|+|+++... ..+.++..+........+ +
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 210 000 0 0111222 23444443 3566799999998653 244443333322233444 4
Q ss_pred EEcccCCcccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhh
Q 047071 588 VASRTVGACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 588 VTTR~~~va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
+|++...+... ......+++.+++.++...++...... .. -..+....|++.++|.|..+..+
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55444333221 123468999999999999999874322 11 22455788999999999865543
No 59
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00023 Score=81.17 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=102.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccc------cccccEE-EEeeccccCcHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKT------KLIFDVI-ILVTVSRYWSVRKIQ 524 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~v------r~~Fd~i-~WV~vs~~~~~~~ll 524 (902)
....++|.+..++.+.+.+.++.. +.+.++|+.|+||||+|+.+.+.... ...|... +-++.....++ +..
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDI 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHH
Confidence 445679999999999999987654 58889999999999999999765421 1112111 11111111111 111
Q ss_pred HHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEc-ccCCcccc-cC
Q 047071 525 NDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVAS-RTVGACLE-MD 600 (902)
Q Consensus 525 ~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTT-R~~~va~~-~~ 600 (902)
..++..+... -..+++-++++|+++... .+..+...+......+.+|++| ....+... ..
T Consensus 94 ~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 1222211100 112345589999997543 3555543333333344555544 33333221 22
Q ss_pred cceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 601 ASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 601 ~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
....+++++++.++....+...+... .-.-..+....|+..++|.+-
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~-g~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKE-GIKFEDDALHIIAQKADGALR 204 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCHH
Confidence 34578999999999988888766441 112234677888888888665
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0001 Score=89.07 Aligned_cols=190 Identities=12% Similarity=0.053 Sum_probs=105.5
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh-
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ- 530 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~- 530 (902)
....+||.+..+..|.+++..+.+ ..+.++|+.|+||||+|+.+++..-...... +. .+........+...
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~----pCg~C~sCr~i~~g~ 86 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GE----PCGVCQSCTQIDAGR 86 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CC----CCcccHHHHHHhccC
Confidence 445679999999999999987664 4689999999999999999876542111100 00 00000000000000
Q ss_pred ----cCcCCCCCCcchhhHHHHHh----hhcCceeEEEEccchhhhh--hhhhcCCCCCCCCCcEEEEEccc-CCccc-c
Q 047071 531 ----LPLYCEDSEADSDVAEKLFH----FLNGKKFLLLLDDVWEQIN--LQEVGIPDPSSENVGKIVVASRT-VGACL-E 598 (902)
Q Consensus 531 ----L~~~~~~~~~~~~l~~~L~~----~L~~kr~LLVLDDV~d~~~--~~~L~~~l~~~~~GSkIIVTTR~-~~va~-~ 598 (902)
+..........+++...+.. -..+++-++|||+++.... ...|+..+.......++|++|.+ ..+.. .
T Consensus 87 ~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 87 YVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred ccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 00000001111222221111 0135667899999976432 44444333333344566666644 33321 1
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
.+....+++.+++.++....+...+... ...-..+....|++.++|.+.-+
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kE-gi~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSE-KIAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHhCCCHHHH
Confidence 2234567889999999998888776541 11223456788999999988543
No 61
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.76 E-value=0.00021 Score=78.37 Aligned_cols=187 Identities=13% Similarity=0.046 Sum_probs=114.3
Q ss_pred HHHHHHHhhcC---CCceEEEEecCCCCChhhHHHHHhhcccccccc----cEEEEeeccccCcHHHHHHHHHHhcCcCC
Q 047071 463 TVLKILQCISG---VEAGKIGIHGISGIGKTTVLKALISYPKTKLIF----DVIILVTVSRYWSVRKIQNDVLRQLPLYC 535 (902)
Q Consensus 463 ele~L~~~L~~---~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F----d~i~WV~vs~~~~~~~ll~~Il~~L~~~~ 535 (902)
.++.|.++|.. ...+-+.|+|.+|.|||+++++++...-....= -.++.+.....++...+...|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34555555543 345679999999999999999998654321111 14677778888999999999999999988
Q ss_pred CCCCcchhhHHHHHhhhcC-ceeEEEEccchhh-----hhhhhhc---CCCCCCCCCcEEEEEcccCCccccc-----Cc
Q 047071 536 EDSEADSDVAEKLFHFLNG-KKFLLLLDDVWEQ-----INLQEVG---IPDPSSENVGKIVVASRTVGACLEM-----DA 601 (902)
Q Consensus 536 ~~~~~~~~l~~~L~~~L~~-kr~LLVLDDV~d~-----~~~~~L~---~~l~~~~~GSkIIVTTR~~~va~~~-----~~ 601 (902)
....+...+.......++. +--+||+|.+.+. .+-..+. ..+.+.-.-+-|.+-|+.-.-+-.. +-
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~R 204 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASR 204 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhc
Confidence 6655666666666666654 3448999999764 1111111 1122222334456666542221111 12
Q ss_pred ceeEEecccCHH-HHHHHHHHHhcC----cccCCCCcchHHHHHHHhCCCcch
Q 047071 602 SKLIEVETVSKK-EAWELFYEQVGR----VIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 602 ~~~~~L~~Ls~e-es~~LF~~~af~----~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
..++.|.....+ +...|+...... ....-...+++..|...++|+.=-
T Consensus 205 F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 205 FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 345666665543 455555443322 222333457889999999997643
No 62
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00015 Score=85.16 Aligned_cols=179 Identities=13% Similarity=0.073 Sum_probs=107.1
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhccccc-------------------ccccEEEEe
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTK-------------------LIFDVIILV 512 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr-------------------~~Fd~i~WV 512 (902)
....+||-+..++.|.+.+..+.+. .+.++|+.|+||||+|+.++...-.. ..+.-++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 4456799999999998888776654 78999999999999999887532100 011111222
Q ss_pred eccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEc
Q 047071 513 TVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVAS 590 (902)
Q Consensus 513 ~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTT 590 (902)
+.+....+.++ +.++..... .-..+++-++|+|+++... ..+.|...+....+.+++|++|
T Consensus 91 daas~~~vddI-R~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ecccCCCHHHH-HHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 22222221111 111111100 0013456689999997543 3555554444444556666655
Q ss_pred c-cCCccc-ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 591 R-TVGACL-EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 591 R-~~~va~-~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
. ...+.. .......+++.+++.++....+...+.. ....-..+....|++.++|.+-.
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~-Egi~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK-ENIEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHH
Confidence 3 334322 1234578899999999999998887754 12222345677899999998753
No 63
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00024 Score=81.64 Aligned_cols=184 Identities=10% Similarity=-0.037 Sum_probs=103.1
Q ss_pred ccccchHHHHHHHHHhhcCCC----------ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHH
Q 047071 455 FVSRSTERTVLKILQCISGVE----------AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQ 524 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~----------~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll 524 (902)
..++|-+..++.|.+.+..+. ...+.++|+.|+|||++|..+++..--...- + .+++.-..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHH
Confidence 456899999999999987643 4568899999999999999986543111000 0 000000111
Q ss_pred HHHHHhcCcC------CCCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcc
Q 047071 525 NDVLRQLPLY------CEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASR 591 (902)
Q Consensus 525 ~~Il~~L~~~------~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR 591 (902)
+.+...-... .......++ ++.+.+.+ .+++-++|+|+++... ....+...+....++..+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 1111100000 000011122 12222222 2455688889998652 33444444433344566666665
Q ss_pred cC-Ccccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhh
Q 047071 592 TV-GACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 592 ~~-~va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
+. .+... ......+.+.+++.++....+....+. ..+.+..++..++|.|..+..+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHHH
Confidence 53 33321 233578999999999998888754321 1345778999999999755443
No 64
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00022 Score=86.07 Aligned_cols=193 Identities=9% Similarity=0.025 Sum_probs=109.9
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhccccccccc--EEEEeeccccCcHHHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFD--VIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd--~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
....++|.+..++.|.+.+..+.+ ..+.++|+.|+||||+|+.+++..-...... ...+ ..+......+.|..
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhc
Confidence 345679999999999999987654 4688999999999999999987552111110 0000 00111111122221
Q ss_pred hcCcCC-----CCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEc-ccCCcc
Q 047071 530 QLPLYC-----EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVAS-RTVGAC 596 (902)
Q Consensus 530 ~L~~~~-----~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTT-R~~~va 596 (902)
...... ......++.. .+.+.+ .+++-++|+|+++... ..+.|...+......+.+|++| ....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 111100 0111122222 222222 2455689999997653 3555554454444556665544 434433
Q ss_pred cc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 597 LE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 597 ~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
.. ......+++.+++.++....+...+.. ....-..+....|++.++|.+.-+.
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~k-egi~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAK-EGVEVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 22 223568899999999999988887643 1112223567888999999886443
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=9.2e-05 Score=88.42 Aligned_cols=192 Identities=9% Similarity=0.002 Sum_probs=107.5
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....++|.+..++.|.+.+..+.+ +.+.++|+.|+||||+|+.+++...... |... ..++.....+.+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTNQ 86 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcCC
Confidence 345679999999999999876544 5788999999999999999976652111 2111 1111112222221111
Q ss_pred CcCC-----CCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEc-ccCCccc-
Q 047071 532 PLYC-----EDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVAS-RTVGACL- 597 (902)
Q Consensus 532 ~~~~-----~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTT-R~~~va~- 597 (902)
.... ......++. +.+.+. ..+++-++|+|+++.. ..+..|...+........+|++| ....+..
T Consensus 87 h~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 SVDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 1000 000112221 112221 1234447999999764 34555544443333455555554 3333321
Q ss_pred ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc-hhhhh
Q 047071 598 EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL-LIIVT 653 (902)
Q Consensus 598 ~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL-AL~vl 653 (902)
.......+++.+++.++....+...+... ...-..+.+..|++.++|.+- |+..+
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~ke-gi~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKE-KIKIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 12235688999999999998888766431 111224567889999999764 44443
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00017 Score=85.65 Aligned_cols=180 Identities=11% Similarity=0.065 Sum_probs=104.7
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhccccccc-------------------ccEEEEe
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLI-------------------FDVIILV 512 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~-------------------Fd~i~WV 512 (902)
....+||-+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++..--... |.-++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 4456799999999999999876654 5789999999999999998765421111 1112222
Q ss_pred eccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEc
Q 047071 513 TVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVAS 590 (902)
Q Consensus 513 ~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTT 590 (902)
+......+.++ ++++..+.. .-..++.-++|+|+|+.. .....++..+......+++|++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 21111111111 111111100 011356668999999864 34555544444434456666555
Q ss_pred cc-CCccc-ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 591 RT-VGACL-EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 591 R~-~~va~-~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
.+ ..+.. .......+++++++.++-...+...+... ...-..+....|++.++|.+.-+
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~e-gi~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEE-NVEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCcHHHH
Confidence 33 33321 12234678899999998877766655431 11222345678899999987543
No 67
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.73 E-value=0.00017 Score=76.58 Aligned_cols=167 Identities=13% Similarity=0.050 Sum_probs=91.6
Q ss_pred chHHH-HHHHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCC
Q 047071 459 STERT-VLKILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCE 536 (902)
Q Consensus 459 GRe~e-le~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~ 536 (902)
|.... +..+.++... ...+.+.|+|..|+|||+||..+++... .... ...+++..... ..+
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~~--------- 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LAF--------- 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HHH---------
Confidence 54333 3444444332 3456788999999999999999987652 1122 33444432211 000
Q ss_pred CCCcchhhHHHHHhhhcCceeEEEEccchhhhh--hhhhcCCCCC-CCCCc-EEEEEcccCCccc--------ccCccee
Q 047071 537 DSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN--LQEVGIPDPS-SENVG-KIVVASRTVGACL--------EMDASKL 604 (902)
Q Consensus 537 ~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~--~~~L~~~l~~-~~~GS-kIIVTTR~~~va~--------~~~~~~~ 604 (902)
... ...-+||+||++.... -..+...+.. ...+. .+|+|++...... .+.....
T Consensus 86 -------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~ 151 (227)
T PRK08903 86 -------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLV 151 (227)
T ss_pred -------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeE
Confidence 011 2334789999975422 1222222211 12333 4666666433211 2222468
Q ss_pred EEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccc
Q 047071 605 IEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRAL 657 (902)
Q Consensus 605 ~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~L 657 (902)
+++.+|++++-..++.+.+.. ....-.++....|++.+.|++..+..+...|
T Consensus 152 i~l~pl~~~~~~~~l~~~~~~-~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 152 YELKPLSDADKIAALKAAAAE-RGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEecCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 899999998877776654432 1122234567788888888888776655433
No 68
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00016 Score=86.32 Aligned_cols=187 Identities=10% Similarity=0.052 Sum_probs=103.9
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....++|-+..++.|.+++..+.+. .+.++|+.|+||||+|+.++...-...... ..++........+...-
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-------ATPCGVCSACLEIDSGR 86 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCC
Confidence 3456799999999999999876654 568999999999999999976542111000 00000000000110000
Q ss_pred C-----cCCCCCCcchhhHHHHHhh-----hcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEccc-CCcccc
Q 047071 532 P-----LYCEDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRT-VGACLE 598 (902)
Q Consensus 532 ~-----~~~~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~ 598 (902)
. .........++.. .+.+. ..+++-++|+|+++... ....++..+......+.+|++|.+ ..+...
T Consensus 87 ~~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~t 165 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 165 (527)
T ss_pred CCceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchh
Confidence 0 0000001112211 11111 13566799999998653 345554444443345556655543 333311
Q ss_pred -cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 599 -MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 599 -~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
......+++++++.++....+...+... .-....+....|++.++|.+-
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~~e-gi~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQE-NIPFDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHH
Confidence 1224678999999999988887766431 112233456889999999875
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00033 Score=84.70 Aligned_cols=194 Identities=11% Similarity=0.040 Sum_probs=107.3
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEee-ccccCcHHHHHHHHHHh
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVT-VSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~-vs~~~~~~~ll~~Il~~ 530 (902)
....+||-+..+..|.+.+.++.+ ..+.++|+.|+||||+|..+++..-....++.-.|.. +..+++.....+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 445679999999999998877655 4588999999999999998876553211111000110 00111111111111111
Q ss_pred cCcCC-----CCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEc-ccCCccc
Q 047071 531 LPLYC-----EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVAS-RTVGACL 597 (902)
Q Consensus 531 L~~~~-----~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTT-R~~~va~ 597 (902)
-.... ......++... +.+.+ .+++-++|+|+++... ..+.|...+......+.+|++| +...+..
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00000 00111222222 22222 3455688999997653 3555555554444455555444 4334332
Q ss_pred -ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 598 -EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 598 -~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
.......+++.+++.++....+...+.. ....-..+.+..|++.++|..-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~-egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRA-EGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCHH
Confidence 1234678999999999988877765532 1111234567889999999654
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=3.6e-05 Score=60.50 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=34.3
Q ss_pred CCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 858 SELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 858 ~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
++|++|+|+ .+.++.||+. +++|++|++|+|++|+|+.+|.
T Consensus 1 ~~L~~L~l~-~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-NNQITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEET-SSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEcc-CCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 479999999 6679999998 9999999999999999988764
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.66 E-value=0.00055 Score=72.19 Aligned_cols=171 Identities=15% Similarity=0.098 Sum_probs=90.1
Q ss_pred CCccccchHHHHHHHHHhhc-----CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCIS-----GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~-----~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
..+..||.+.-++.+.-++. ++.+.-+.+||++|+||||||.-+++.. ...|. +++. ...+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg-~~i~-------- 87 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSG-PAIE-------- 87 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEEC-CC----------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc--CCCeE---eccc-hhhh--------
Confidence 45677999998888766553 2457788999999999999999999887 44442 1211 1111
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCC--------CCCCCCC-----------cEE
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIP--------DPSSENV-----------GKI 586 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~--------l~~~~~G-----------SkI 586 (902)
...++...+.+ + +++.+|.+|.+... .+-+.+... ....+++ +-|
T Consensus 88 ------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 88 ------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11122222211 2 23446667777532 111111000 0011111 224
Q ss_pred EEEcccCCcccccCc--ceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 587 VVASRTVGACLEMDA--SKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 587 IVTTR~~~va~~~~~--~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
=-|||...+...+.. .-..+|+..+.+|-..+..+.+.. ..-+-..+.+.+|++.|.|-|--++-
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 468888666443322 234589999999999999877654 22223356799999999999964443
No 72
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.63 E-value=8.2e-05 Score=96.85 Aligned_cols=74 Identities=30% Similarity=0.401 Sum_probs=66.8
Q ss_pred CCCCCCCcccccccEEEeccCC-CcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC-CCccCCC
Q 047071 825 GLTEPPSLKEWEQAKFIFLMDN-ELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-RINCLPN 900 (902)
Q Consensus 825 ~l~~lp~l~~l~~Lr~L~L~~~-~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~I~~LP~ 900 (902)
.+..+|.+..+.+|+.|+|.+| .+..+|.. ..|.+|++|+|++|..++.+|.. + +|++|++|+|++| .++.+|.
T Consensus 646 ~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccccc
Confidence 4677888888999999999998 57889988 99999999999999999999997 5 8999999999999 7888774
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00043 Score=86.26 Aligned_cols=187 Identities=9% Similarity=-0.014 Sum_probs=106.7
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh-
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ- 530 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~- 530 (902)
.+..+||.+..++.|.+.+..+.+. .+.++|+.|+||||+|+.+++.......... ..++.....+.|...
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGG 85 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCC
Confidence 3456799999999999999876654 5789999999999999999776532111100 000000111111100
Q ss_pred ---c---CcCCCCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEc-ccCCcc
Q 047071 531 ---L---PLYCEDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVAS-RTVGAC 596 (902)
Q Consensus 531 ---L---~~~~~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTT-R~~~va 596 (902)
+ ..........++.. .+++. ..++.-++|||+++.. ..++.|+..+......+.+|++| ....+.
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0 00000001122222 12221 2356668999999865 33555555554444455555544 444443
Q ss_pred cc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 597 LE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 597 ~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
.. ......|++..++.++...++.+.+... ......+....|++.++|.+.
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E-Gv~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQE-GVPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHH
Confidence 32 2346789999999999888887765331 112233456788999999884
No 74
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.60 E-value=0.00034 Score=77.94 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=84.1
Q ss_pred CccccchHHHHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|.+...+.+..++..+. ..++.++|++|+|||++|+.+++.. ... ...++.+. ... +..+..+..+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~l~~~~ 92 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNRLTRFA 92 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHHHHHHH
Confidence 3556999999999999997755 4577779999999999999998865 222 23333333 111 11111111110
Q ss_pred cCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--h-hhhhhcCCCCCCCCCcEEEEEcccCCcc-c-ccCcceeEEe
Q 047071 533 LYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--I-NLQEVGIPDPSSENVGKIVVASRTVGAC-L-EMDASKLIEV 607 (902)
Q Consensus 533 ~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~-~~~~L~~~l~~~~~GSkIIVTTR~~~va-~-~~~~~~~~~L 607 (902)
.. ..+.+.+-+||||+++.. . ....+...+.....++++|+||....-. . .......+.+
T Consensus 93 ~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 93 ST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred Hh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 00 001234568999999754 1 1222322233334567888888643211 1 1122346777
Q ss_pred cccCHHHHHHHHHH
Q 047071 608 ETVSKKEAWELFYE 621 (902)
Q Consensus 608 ~~Ls~ees~~LF~~ 621 (902)
+..+.++...++..
T Consensus 158 ~~p~~~~~~~il~~ 171 (316)
T PHA02544 158 GVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 78888887766654
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.59 E-value=0.0009 Score=77.07 Aligned_cols=171 Identities=13% Similarity=0.135 Sum_probs=96.8
Q ss_pred CCccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 453 GLFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
....+.|++..+++|.+.+.. ..++-|.++|++|+|||+||+.+++... ..| +.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~~-----i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CCE-----EEeeh---
Confidence 334568999999999887631 2456789999999999999999988652 222 22211
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhh------------h----hhhhcCCCCC--C
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQI------------N----LQEVGIPDPS--S 580 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~------------~----~~~L~~~l~~--~ 580 (902)
.++. ..... ........+.+.. ...+.+|+||+++... + +..+...+.. .
T Consensus 199 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111 11100 1112222222222 3467899999997531 1 1122211211 1
Q ss_pred CCCcEEEEEcccCCccc-cc----CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 581 ENVGKIVVASRTVGACL-EM----DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 581 ~~GSkIIVTTR~~~va~-~~----~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
..+..||.||....... .+ .-...+.+++.+.++-.++|+.++........ .....+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCC
Confidence 23456777776543211 11 12457899999999999999987765211111 1246677777664
No 76
>PRK05642 DNA replication initiation factor; Validated
Probab=97.58 E-value=0.00015 Score=77.71 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=87.2
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
..+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~------------------~~~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR------------------GPELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh------------------hHHHHHhhhhCC
Confidence 5788999999999999999987652 2223456775432 1110 012223333222
Q ss_pred eEEEEccchhh---hhhhh-hcCCCCC-CCCCcEEEEEcccCCc---------ccccCcceeEEecccCHHHHHHHHHHH
Q 047071 557 FLLLLDDVWEQ---INLQE-VGIPDPS-SENVGKIVVASRTVGA---------CLEMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 557 ~LLVLDDV~d~---~~~~~-L~~~l~~-~~~GSkIIVTTR~~~v---------a~~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
+||+||+... ..|+. +...+.. ...|..||+|++...- ...+.....+++++++.++-..++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999632 23433 2222211 2346678898875332 122334577899999999999999866
Q ss_pred hcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 623 VGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 623 af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
+... .-.-.+++..-|++.+.|..-.+.
T Consensus 179 a~~~-~~~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 179 ASRR-GLHLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHc-CCCCCHHHHHHHHHhcCCCHHHHH
Confidence 6431 112224667777777776654443
No 77
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00026 Score=85.64 Aligned_cols=192 Identities=9% Similarity=0.009 Sum_probs=110.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....+||-+..++.|...+..+.+ ..+.++|+.|+||||+|+.+++.......+ .....++.....+.+....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCC
Confidence 345679999999999998877554 456899999999999999998765311110 0011122223333333322
Q ss_pred CcCC-----CCCCcchhhHHHHHhhh-----cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCcccc
Q 047071 532 PLYC-----EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGACLE 598 (902)
Q Consensus 532 ~~~~-----~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~ 598 (902)
.... ......++. ..+.+.+ .+++-++|||+++.. ...+.|...+......+.+|+++.+ ..+...
T Consensus 88 ~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 1110 011112222 2222222 245678999999755 3355554444433345566665543 333221
Q ss_pred -cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 599 -MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 599 -~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
......+.+.+++.++....+...+... ...-..+.+..|++.++|.+..+..
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~e-gl~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAE-GINLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 1234578899999999888888776541 1122345688999999998864433
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.58 E-value=0.00028 Score=87.66 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=87.8
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccc---cccc-cEEEEeeccccCcHHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKT---KLIF-DVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~v---r~~F-d~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
.++++||+.++++++..|......-+.++|++|+|||++|+.+++.... ...+ +..+|. + +...+ +.
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LA 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hh
Confidence 4578999999999999997765556779999999999999999876421 1111 233332 1 11111 10
Q ss_pred hcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhh----------h-hhhhcCCCCCCCCCc-EEEEEcccCCc-
Q 047071 530 QLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQI----------N-LQEVGIPDPSSENVG-KIVVASRTVGA- 595 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~----------~-~~~L~~~l~~~~~GS-kIIVTTR~~~v- 595 (902)
.. . .....+.....+.+.+ ..++.+|++|+++... + -+-+...+ ..|. ++|-+|.....
T Consensus 252 ~~---~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 252 GT---K-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred hc---c-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHH
Confidence 00 0 0012223333333333 3467899999997431 1 11222222 2333 34444432111
Q ss_pred ---c---cccCcceeEEecccCHHHHHHHHHHHhc
Q 047071 596 ---C---LEMDASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 596 ---a---~~~~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
. ........+.+++++.++...++.....
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 0 0111245789999999999999986553
No 79
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.0018 Score=73.99 Aligned_cols=196 Identities=12% Similarity=0.054 Sum_probs=122.0
Q ss_pred cCCccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHH
Q 047071 452 FGLFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
......+||+.++..+..|+.. +..+-+-|.|-+|.|||.+...++.+..-...=-+++++++..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 3455679999999999999864 456788999999999999999998877422222356788777656777888888
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhhcC--ceeEEEEccchhhhh--hhhhcCCCCC-CCCCcEEEEEcccCC------cc
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFLNG--KKFLLLLDDVWEQIN--LQEVGIPDPS-SENVGKIVVASRTVG------AC 596 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L~~--kr~LLVLDDV~d~~~--~~~L~~~l~~-~~~GSkIIVTTR~~~------va 596 (902)
...+........+..+....+...... ..+|+|||..+.... -..+...|.+ .-+++++|+.---.. ..
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 777733322222335555666665543 368999999875321 1112111211 224566554332111 11
Q ss_pred cc-----cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 597 LE-----MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 597 ~~-----~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
.. .-....+...|-+.++-.++|..+.-.....+.+....+.++++|.|.-
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 11 1124567888999999999999888663333333345555666665543
No 80
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.54 E-value=0.00021 Score=81.35 Aligned_cols=92 Identities=21% Similarity=0.158 Sum_probs=64.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc--CcHHHHHHHHHHhcCcCCCCCCcch--hhHHHH--
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY--WSVRKIQNDVLRQLPLYCEDSEADS--DVAEKL-- 548 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~--~~~~~ll~~Il~~L~~~~~~~~~~~--~l~~~L-- 548 (902)
.-..++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.++..+-....+..... .....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999998853 37999999998865 7899999999655433321111111 111111
Q ss_pred --Hhh-hcCceeEEEEccchhh
Q 047071 549 --FHF-LNGKKFLLLLDDVWEQ 567 (902)
Q Consensus 549 --~~~-L~~kr~LLVLDDV~d~ 567 (902)
... -.+++++|++|.+...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 111 2579999999999654
No 81
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00071 Score=82.08 Aligned_cols=177 Identities=10% Similarity=0.070 Sum_probs=106.0
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccc---------------------cccccEEE
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKT---------------------KLIFDVII 510 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~v---------------------r~~Fd~i~ 510 (902)
....++|-+..++.|.+.+..+.+ ..+.++|+.|+||||+|+.+...... ..+|+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~- 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH- 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-
Confidence 345679999999999999987665 45889999999999999888765421 1122221
Q ss_pred EeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEE
Q 047071 511 LVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVV 588 (902)
Q Consensus 511 WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIV 588 (902)
.++......+.+ +++++.++... -..+++-++|+|+++.. ..+..|...+......+.+|+
T Consensus 94 ~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 111111111111 11111111100 01234558899998765 335556555544444566555
Q ss_pred -EcccCCcccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 589 -ASRTVGACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 589 -TTR~~~va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
|+....+... ......+++.+++.++....+...+... .-.-..+.+..|+..++|..-
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e-gi~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE-GITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHH
Confidence 4444444322 2345789999999999998888766441 112223467889999998764
No 82
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00052 Score=82.46 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|-+..+..|.+.+.++. ...+.++|+.|+||||+|+.+++..-.....+ ...++.....+.+.....
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 4556899988888888887765 46788999999999999999987663211100 001111111122211110
Q ss_pred cCC-----CCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCcccc-
Q 047071 533 LYC-----EDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGACLE- 598 (902)
Q Consensus 533 ~~~-----~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~- 598 (902)
... ......++ ++.+.+. ..+++-++|||+++.. ..+..|...+........+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000 00001111 1222222 2356679999999765 3355554444333334555555544 443321
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc-chhhhhccc
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP-LLIIVTGRA 656 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP-LAL~vlg~~ 656 (902)
......+++++++.++....+...+... ...-..+.+..|++.++|.+ .|+..+...
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~e-gi~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGRE-GVDYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2234678999999999998888766541 11223456788999999965 566666543
No 83
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.00021 Score=83.76 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=99.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
.-+.|+|..|+|||.|++.+++.......-..+++++ ..++...+...+... ......+++.++ ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~-------~~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT-------HKEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh-------hhHHHHHHHHhc-cC
Confidence 4588999999999999999988553222223345553 345556665554321 012233444444 34
Q ss_pred eEEEEccchhhh---hh-hhhcCCCCC-CCCCcEEEEEcccCC---------cccccCcceeEEecccCHHHHHHHHHHH
Q 047071 557 FLLLLDDVWEQI---NL-QEVGIPDPS-SENVGKIVVASRTVG---------ACLEMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 557 ~LLVLDDV~d~~---~~-~~L~~~l~~-~~~GSkIIVTTR~~~---------va~~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
-+|||||+.... .+ +.+...+.. ...|..||+|+.... +...+...-.+.+++++.++-..++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 488999996431 12 222222211 223456888876432 2223345567889999999999999988
Q ss_pred hcCccc-CCCCcchHHHHHHHhCCCcchhhhhc
Q 047071 623 VGRVIE-LPHIQPFAQTIVYGCGGLPLLIIVTG 654 (902)
Q Consensus 623 af~~~~-~~~l~~ia~~Ia~~c~GlPLAL~vlg 654 (902)
+-.... ..-.+++..-|+..++|.|-.+.-+.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 754211 12345678889999999987776554
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.50 E-value=0.00036 Score=75.88 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=77.5
Q ss_pred cccchHHHHHHHHHhhc---------------CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 456 VSRSTERTVLKILQCIS---------------GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~---------------~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
.++|.+..+++|.+... .+...-+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 35777776666654321 12345678999999999999999976531111001111222221
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh----------hhhhhhcCCCCCCCCCcEEEEEc
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ----------INLQEVGIPDPSSENVGKIVVAS 590 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~----------~~~~~L~~~l~~~~~GSkIIVTT 590 (902)
.++... ... .........+.. . ...+|+||+++.. +....+...+........+|+++
T Consensus 83 ~~l~~~----~~g-----~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVGE----YIG-----HTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhhh----hcc-----chHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111111 000 011111122211 1 2348999999752 22334433333333333555555
Q ss_pred ccCCc----------ccccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 591 RTVGA----------CLEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 591 R~~~v----------a~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
..... ...+ ...+.+++++.++-.+++...+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHH
Confidence 43322 1111 346889999999999999877653
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00033 Score=87.99 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=86.4
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccc---cccc-cEEEEeeccccCcHHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKT---KLIF-DVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~v---r~~F-d~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
.++++||+.+++++++.|......-+.++|++|+|||++|+.++..... .... +..+|. + +...+ +.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc
Confidence 4568999999999999997755556679999999999999999876421 1111 233342 1 11111 11
Q ss_pred hcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhh---------hhhhhcCCCCCCCCC-cEEEEEcccCCcc--
Q 047071 530 QLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQI---------NLQEVGIPDPSSENV-GKIVVASRTVGAC-- 596 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~---------~~~~L~~~l~~~~~G-SkIIVTTR~~~va-- 596 (902)
..... ...++....+.+.+ ..++.+|++|+++... +...++. |....| -++|-+|......
T Consensus 249 ---g~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk--p~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 ---GTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILK--PALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred ---cCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH--HHHhCCCcEEEEeCCHHHHHHH
Confidence 11111 12222333333332 3568899999996431 1112211 111222 3455555443321
Q ss_pred -----cccCcceeEEecccCHHHHHHHHHHH
Q 047071 597 -----LEMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 597 -----~~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
........+.++..+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 11123467888999999988888654
No 86
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00079 Score=80.97 Aligned_cols=192 Identities=9% Similarity=0.013 Sum_probs=107.4
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....+||.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++..--....+ + .+++.-...+.+...-
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPNG 83 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhccc
Confidence 3456799999999999999876654 578999999999999999986542111100 0 0111111111111100
Q ss_pred C-------cCCCCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEE-EcccCCcc
Q 047071 532 P-------LYCEDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVV-ASRTVGAC 596 (902)
Q Consensus 532 ~-------~~~~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIV-TTR~~~va 596 (902)
. .........++. +.+.+. ..+++-++|+|+++.. ...+.|+..+........+|+ ||....+.
T Consensus 84 ~~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0 000000012221 122221 1345668999998743 345555544444444555554 44444443
Q ss_pred cc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc-hhhhh
Q 047071 597 LE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL-LIIVT 653 (902)
Q Consensus 597 ~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL-AL~vl 653 (902)
.. ......+++.+++.++....+...+... ...-..+....|++.++|.+- ++..+
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e-gi~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQE-GVVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 2335789999999999888887765431 112223456778899999774 44444
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=0.00059 Score=85.77 Aligned_cols=178 Identities=10% Similarity=0.062 Sum_probs=96.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEE-eeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIIL-VTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~W-V~vs~~~~~~~ll~~I 527 (902)
..+++|||+.++.+++..|......-+.++|++|+||||||+.+++...-.. -.+..+| +.++.-
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l---------- 254 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL---------- 254 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------
Confidence 3467899999999999999776555667999999999999999987642111 1122222 222210
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhh--cCceeEEEEccchhhh-------hhh--hhcCCCCCCCCC-cEEEEEcccCCc
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFL--NGKKFLLLLDDVWEQI-------NLQ--EVGIPDPSSENV-GKIVVASRTVGA 595 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L--~~kr~LLVLDDV~d~~-------~~~--~L~~~l~~~~~G-SkIIVTTR~~~v 595 (902)
..........+.....+.+.+ .+.+.+|++|++.... +-+ .++. |....| -++|-+|.....
T Consensus 255 ----~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk--p~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 255 ----QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLK--PALARGELRTIAATTWAEY 328 (852)
T ss_pred ----hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhh--HHhhCCCeEEEEecCHHHH
Confidence 000000001112222222222 2468999999987542 111 1211 222333 345555543211
Q ss_pred c-------cccCcceeEEecccCHHHHHHHHHHHhcCc---ccCCCCcchHHHHHHHhCCC
Q 047071 596 C-------LEMDASKLIEVETVSKKEAWELFYEQVGRV---IELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 596 a-------~~~~~~~~~~L~~Ls~ees~~LF~~~af~~---~~~~~l~~ia~~Ia~~c~Gl 646 (902)
. ........+.+++++.++...++....... ..-.-..+....+++.+.+.
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 0 111234689999999999999975544321 11111234556666666543
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.48 E-value=0.00075 Score=78.10 Aligned_cols=158 Identities=18% Similarity=0.101 Sum_probs=92.2
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
..+.|+|+.|+|||.|++.+++....+..-..++|++. .++...+...+... .. ..+.+.+++ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~~-~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KM----EEFKEKYRS-V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CH----HHHHHHHHh-C
Confidence 46889999999999999999987642211134556643 23333444433211 11 223333332 3
Q ss_pred eEEEEccchhhh---hh-hhhcCCCCC-CCCCcEEEEEcccCC---------cccccCcceeEEecccCHHHHHHHHHHH
Q 047071 557 FLLLLDDVWEQI---NL-QEVGIPDPS-SENVGKIVVASRTVG---------ACLEMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 557 ~LLVLDDV~d~~---~~-~~L~~~l~~-~~~GSkIIVTTR~~~---------va~~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
-+|||||++... .+ +.+...+.. ...|..+|+||.... +...+.....+.+++.+.++-..++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 489999997431 11 112211111 123456888876421 2233334567899999999999999988
Q ss_pred hcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 623 VGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 623 af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
+.. ....-.+++...|++.+.|.+-.+.
T Consensus 281 ~~~-~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 281 AEE-EGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHH-cCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 765 1222235677888888888765443
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.48 E-value=0.00022 Score=75.57 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=86.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGK 555 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~k 555 (902)
...+.|+|..|+|||.|.+.+++.......-..++|++ ..++...+...+.. .....+++.++ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~---------~~~~~~~~~~~-~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD---------GEIEEFKDRLR-S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT---------TSHHHHHHHHC-T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc---------ccchhhhhhhh-c
Confidence 34678999999999999999998764222223455663 33444444443322 11223444444 3
Q ss_pred eeEEEEccchhhh---hhhhh-cCCCCC-CCCCcEEEEEcccCCc-c--------cccCcceeEEecccCHHHHHHHHHH
Q 047071 556 KFLLLLDDVWEQI---NLQEV-GIPDPS-SENVGKIVVASRTVGA-C--------LEMDASKLIEVETVSKKEAWELFYE 621 (902)
Q Consensus 556 r~LLVLDDV~d~~---~~~~L-~~~l~~-~~~GSkIIVTTR~~~v-a--------~~~~~~~~~~L~~Ls~ees~~LF~~ 621 (902)
-=+|+|||++... .|+.. ...+.. ...|.+||+|++...- . ..+...-.+++++++.++-..++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 4478999997542 12221 111111 2346689999965432 1 2233566899999999999999998
Q ss_pred HhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 622 QVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 622 ~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
.+.. ..-.-.++++.-|++.+.+..-
T Consensus 178 ~a~~-~~~~l~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 178 KAKE-RGIELPEEVIEYLARRFRRDVR 203 (219)
T ss_dssp HHHH-TT--S-HHHHHHHHHHTTSSHH
T ss_pred HHHH-hCCCCcHHHHHHHHHhhcCCHH
Confidence 8764 1112234556666666655443
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.00099 Score=78.14 Aligned_cols=184 Identities=9% Similarity=0.033 Sum_probs=102.6
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccc----cEE-EEee--c--cccCcHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIF----DVI-ILVT--V--SRYWSVRK 522 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F----d~i-~WV~--v--s~~~~~~~ 522 (902)
....++|.+..++.|.+.+..+.+ ..+.++|+.|+||||+|+.+++..--...- .|. +-.| + ...++..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~- 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL- 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE-
Confidence 345679999999999999977655 568899999999999999887654211000 000 0000 0 0000000
Q ss_pred HHHHHHHhcCcCCCCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcc-cCC
Q 047071 523 IQNDVLRQLPLYCEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASR-TVG 594 (902)
Q Consensus 523 ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR-~~~ 594 (902)
.+.. ......++. ..+.+.+ .+.+-++|+|+++... ..+.|...+........+|++|. ...
T Consensus 94 -------~i~g--~~~~gid~i-r~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 94 -------EIDG--ASHRGIEDI-RQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163 (451)
T ss_pred -------Eeec--cccCCHHHH-HHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHh
Confidence 0000 000011111 1112211 3566789999997542 34444444433334556665553 333
Q ss_pred cccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 595 ACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 595 va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
+... ......+++.+++.++....+...+.. ....-..+.+..|++.++|.+-
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~-eg~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQ-EGIETSREALLPIARAAQGSLR 217 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHH
Confidence 3221 223567899999999988888776543 1112234567889999999764
No 91
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0016 Score=77.28 Aligned_cols=191 Identities=7% Similarity=-0.009 Sum_probs=105.5
Q ss_pred CCccccchHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....++|-+...+.|...+..+.+. +..++|+.|+||||+|+.+++..--...-+. .++........+....
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENR 84 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcC
Confidence 3456799999999999999776654 6689999999999999987654311000000 0000000000000000
Q ss_pred CcC-----CCCCCcchhhHHHHHhh----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccC-Cccc-c
Q 047071 532 PLY-----CEDSEADSDVAEKLFHF----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTV-GACL-E 598 (902)
Q Consensus 532 ~~~-----~~~~~~~~~l~~~L~~~----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~-~va~-~ 598 (902)
... .......++....+... ..+++-++|+|+++.. +....|+..+......+++|++|.+. .+.. .
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHH
Confidence 000 00000122222222110 1245668999999754 33455544443334456666666543 2221 1
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
......+++.+++.++....+...+... ...-..+.+..|++.++|.+--+.
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~E-Gi~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKE-GVSYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCcHHHHH
Confidence 2235688999999999988887766431 112234677889999999885443
No 92
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.37 E-value=3.7e-05 Score=76.93 Aligned_cols=75 Identities=28% Similarity=0.486 Sum_probs=65.9
Q ss_pred CCCCC-CCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc--cCCC
Q 047071 825 GLTEP-PSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN--CLPN 900 (902)
Q Consensus 825 ~l~~l-p~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~--~LP~ 900 (902)
.+..+ |.+.++++|.+|+++++++++||.+ ++++.||.|++. ...+..+|.. ||.++-|++|||.++++. .||-
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprg-fgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccc-cCCCchhhhhhccccccccccCCc
Confidence 34444 5899999999999999999999998 999999999998 8889999999 999999999999999664 5664
Q ss_pred C
Q 047071 901 T 901 (902)
Q Consensus 901 s 901 (902)
.
T Consensus 122 n 122 (264)
T KOG0617|consen 122 N 122 (264)
T ss_pred c
Confidence 3
No 93
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.36 E-value=0.003 Score=72.92 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=97.2
Q ss_pred ccCCccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 451 EFGLFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
......+.|.+..+++|.+.+. . ..++-+.++|++|.|||+||+.+++.. ...|- .+ ..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~fi---~i--~~- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATFI---RV--VG- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCEE---EE--eh-
Confidence 3444566899998888887652 1 245778999999999999999999876 33331 11 11
Q ss_pred CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh------------h----hhhhcCCCCC--
Q 047071 518 WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI------------N----LQEVGIPDPS-- 579 (902)
Q Consensus 518 ~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~------------~----~~~L~~~l~~-- 579 (902)
..+.... ++ .....+...+.......+.+|+||+++... . +..+...+..
T Consensus 213 ---s~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ---SEFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ---HHHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 1111111 00 011111122222234578999999986420 1 1122222211
Q ss_pred CCCCcEEEEEcccCCcccc-----cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 580 SENVGKIVVASRTVGACLE-----MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 580 ~~~GSkIIVTTR~~~va~~-----~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
...+..||.||........ ..-...+.++..+.++...+|..........+. -....++..+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 2235567777775443211 123456889999999988888876654111111 12456666666653
No 94
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.36 E-value=0.00013 Score=74.52 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=18.7
Q ss_pred CCCCCCCCcc-cccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 824 AGLTEPPSLK-EWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 824 ~~l~~lp~l~-~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
..+..+..+. .+.+|+.|+|++|.|..++....|++|++|+|+ +..|+.+++.+..+|++|+.|+|++++|..
T Consensus 29 n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 29 NQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp -------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-TTS---S
T ss_pred cccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEECcCCcCCC
Confidence 3333333333 244555555555555555555555555555555 444555544312345555555555555444
No 95
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.36 E-value=0.0011 Score=77.87 Aligned_cols=157 Identities=18% Similarity=0.112 Sum_probs=92.0
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
.-+.|+|+.|+|||+|++.+++....+..--.++|++.. ++...+...+... .. ..+.+.++ +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~-~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKYR-SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHHh-cC
Confidence 568899999999999999999876322112335566432 2333333333211 11 22333343 34
Q ss_pred eEEEEccchhhh----hhhhhcCCCCC-CCCCcEEEEEcccCC---------cccccCcceeEEecccCHHHHHHHHHHH
Q 047071 557 FLLLLDDVWEQI----NLQEVGIPDPS-SENVGKIVVASRTVG---------ACLEMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 557 ~LLVLDDV~d~~----~~~~L~~~l~~-~~~GSkIIVTTR~~~---------va~~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
-+|||||++... ..+.+...+.. ...|..||+||.... +...+.....+++++++.++-..++...
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 489999996431 11122211110 123455888886532 1233444568999999999999999988
Q ss_pred hcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 623 VGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 623 af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
+.. ....-.+++...|++.+.|..-.+
T Consensus 293 ~~~-~~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 293 AEE-EGIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHH-cCCCCCHHHHHHHHcCcCCCHHHH
Confidence 754 122233567788888888776544
No 96
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.0012 Score=83.33 Aligned_cols=156 Identities=10% Similarity=0.078 Sum_probs=87.2
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccccc----ccEEEE-eeccccCcHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLI----FDVIIL-VTVSRYWSVRKIQNDVL 528 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~----Fd~i~W-V~vs~~~~~~~ll~~Il 528 (902)
.++.+||+.++.+++..|......-+.++|++|+|||+||+.+++...-... ....+| +++ ..+ +
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l----~ 241 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GAL----I 241 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHH----h
Confidence 4578999999999999997765566678999999999999998876421110 122222 221 111 1
Q ss_pred HhcCcCCCCCCcchhhHHHHHhhhc--CceeEEEEccchhhh---------hhhhhcCCCCCCCCC-cEEEEEcccCCcc
Q 047071 529 RQLPLYCEDSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQI---------NLQEVGIPDPSSENV-GKIVVASRTVGAC 596 (902)
Q Consensus 529 ~~L~~~~~~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~---------~~~~L~~~l~~~~~G-SkIIVTTR~~~va 596 (902)
. ... ...+.+.....+.+.+. +++.+|++|++.... +...+..+. ...| -++|-+|.....-
T Consensus 242 a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 A---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLDEYR 315 (852)
T ss_pred h---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHHHHH
Confidence 0 000 00122222333333332 468999999997542 111222222 2233 3444444433220
Q ss_pred -------cccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 597 -------LEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 597 -------~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
........+.++.++.++...++......
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 01123456889999999999998765433
No 97
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0012 Score=76.28 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCC
Q 047071 460 TERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSE 539 (902)
Q Consensus 460 Re~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~ 539 (902)
|..-+.++++.+..... ++.|.|+-++|||||++.+..... .. +++++..+......-+.+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l~d~~~---------- 85 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIELLDLLR---------- 85 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhHHHHHH----------
Confidence 44555666666654433 999999999999999977755442 22 555543332111111111111
Q ss_pred cchhhHHHHHhhhcCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCccc------ccCcceeEEecccCHH
Q 047071 540 ADSDVAEKLFHFLNGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACL------EMDASKLIEVETVSKK 613 (902)
Q Consensus 540 ~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~------~~~~~~~~~L~~Ls~e 613 (902)
.+...-..++.+++||.|.....|......+.+.++. +|++|+-+..... ..|....+.+-||+..
T Consensus 86 -------~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 86 -------AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -------HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 1111111277899999999999999987777776666 8888887765422 1234567899999999
Q ss_pred HHHHHH
Q 047071 614 EAWELF 619 (902)
Q Consensus 614 es~~LF 619 (902)
|...+.
T Consensus 158 Efl~~~ 163 (398)
T COG1373 158 EFLKLK 163 (398)
T ss_pred HHHhhc
Confidence 987654
No 98
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.32 E-value=6.6e-05 Score=87.17 Aligned_cols=84 Identities=25% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCceeeccCCCCCCCC-CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 815 GHRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
....+.++...+++.| .+..-+++-+|+|++|+|+.+|.. -+|..|-+|+|+ .+.+..||+. +..|.+|++|+|+
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ-~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQ-IRRLSMLQTLKLS 181 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHH-HHHHhhhhhhhcC
Confidence 3445556667788888 677888889999999999999987 788889999999 7779999999 9999999999998
Q ss_pred CC-----CCccCCC
Q 047071 892 KT-----RINCLPN 900 (902)
Q Consensus 892 ~c-----~I~~LP~ 900 (902)
++ +++.||.
T Consensus 182 ~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPS 195 (1255)
T ss_pred CChhhHHHHhcCcc
Confidence 87 5566764
No 99
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.30 E-value=0.00078 Score=78.78 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=92.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccc-cEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIF-DVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGK 555 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F-d~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~k 555 (902)
.-+.|+|++|+|||+|++.+++... +.+. ..++|++. .++...+...+... .. ..+.+.++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYRKK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHHhc
Confidence 4589999999999999999998763 2222 24566643 34555555544321 11 2233334445
Q ss_pred eeEEEEccchhh---hhh-hhhcCCCCC-CCCCcEEEEEcccCC---------cccccCcceeEEecccCHHHHHHHHHH
Q 047071 556 KFLLLLDDVWEQ---INL-QEVGIPDPS-SENVGKIVVASRTVG---------ACLEMDASKLIEVETVSKKEAWELFYE 621 (902)
Q Consensus 556 r~LLVLDDV~d~---~~~-~~L~~~l~~-~~~GSkIIVTTR~~~---------va~~~~~~~~~~L~~Ls~ees~~LF~~ 621 (902)
.-+|+|||+... ..+ ..+...+.. ...|..||+||.... +...+.....+.+++.+.+.-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 668999999743 111 122111111 123456888885321 122334456789999999999999988
Q ss_pred HhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 622 QVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 622 ~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
.+.. ....-..++...|++.+.|..-.+
T Consensus 275 ~~~~-~~~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEI-EHGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHh-cCCCCCHHHHHHHHhccccCHHHH
Confidence 8754 112223567778888877764433
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0021 Score=78.19 Aligned_cols=191 Identities=8% Similarity=-0.022 Sum_probs=108.0
Q ss_pred CccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++..-... .+.. ....+...+..+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCC----CCCCCcccHHHHHHhcCCC
Confidence 35579999999999999987643 5788999999999999999987653211 1100 0011122222333322221
Q ss_pred cCC-----CCCCcchhhHHHHHhhh-----cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCcccc-
Q 047071 533 LYC-----EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGACLE- 598 (902)
Q Consensus 533 ~~~-----~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~- 598 (902)
... ......+... .+.+.+ .+++-++|+|+++.. ..+..|+..+........+|++|.+ ..+...
T Consensus 90 ~D~~ei~~~~~~~vd~IR-eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIR-ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHH-HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 110 0111122222 222222 245568999999865 3455555444433344555544433 333221
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
......+++..++.++....+.+.+... ...-..+.+..|++.++|.+..+.
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~ke-gi~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKE-SIEIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2235678888999998888777766431 111223567889999999876443
No 101
>PF14516 AAA_35: AAA-like domain
Probab=97.30 E-value=0.0045 Score=69.83 Aligned_cols=195 Identities=17% Similarity=0.139 Sum_probs=116.2
Q ss_pred cchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-----CcHHHHHHHHH----
Q 047071 458 RSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-----WSVRKIQNDVL---- 528 (902)
Q Consensus 458 VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-----~~~~~ll~~Il---- 528 (902)
|.|...-+++.+.|.+. -..+.|.|+..+|||+|...+.+.... ..|.+ +++++..- .+..++++.++
T Consensus 14 i~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~~-v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYRC-VYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred cCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH-CCCEE-EEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 88986667777777653 358899999999999999999877742 34444 46765431 24555555444
Q ss_pred HhcCcCC-------CCCCcchhhHHHHHhhh---cCceeEEEEccchhhhh--------hhhhcCCC---CCC-CCCc-E
Q 047071 529 RQLPLYC-------EDSEADSDVAEKLFHFL---NGKKFLLLLDDVWEQIN--------LQEVGIPD---PSS-ENVG-K 585 (902)
Q Consensus 529 ~~L~~~~-------~~~~~~~~l~~~L~~~L---~~kr~LLVLDDV~d~~~--------~~~L~~~l---~~~-~~GS-k 585 (902)
+++.... ............+.+.+ .+++.+|+||+++..-. +..++.-. ... ...+ +
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 4444332 01112223334444433 26899999999975421 11111100 000 0111 1
Q ss_pred EE-EEcc-cCCcc----cccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccc
Q 047071 586 IV-VASR-TVGAC----LEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTE 659 (902)
Q Consensus 586 II-VTTR-~~~va----~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~ 659 (902)
++ +.+. ..... ..+.....++|++++.+|...|+...-.. --....++|...++|+|..+..++..+..
T Consensus 171 li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred EEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 2221 11111 11233457899999999999998876432 11233899999999999999999998866
Q ss_pred c
Q 047071 660 E 660 (902)
Q Consensus 660 ~ 660 (902)
+
T Consensus 246 ~ 246 (331)
T PF14516_consen 246 E 246 (331)
T ss_pred c
Confidence 3
No 102
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0025 Score=75.46 Aligned_cols=187 Identities=9% Similarity=-0.028 Sum_probs=102.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccc---cccccEEEEeec-----cccCcHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKT---KLIFDVIILVTV-----SRYWSVRKI 523 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~v---r~~Fd~i~WV~v-----s~~~~~~~l 523 (902)
....++|-+..+..|.+.+..+.+ ..+.++|+.|+||||+|+.++..... .....|....++ +...++.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~-- 91 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI-- 91 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE--
Confidence 345579999999999999977554 45678999999999999998765421 000001000000 0000000
Q ss_pred HHHHHHhcCcCCCCCCcchhhHHHHHhhh-----cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEc-ccCCc
Q 047071 524 QNDVLRQLPLYCEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVAS-RTVGA 595 (902)
Q Consensus 524 l~~Il~~L~~~~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTT-R~~~v 595 (902)
.+... .....++ .+.+.+.+ .+++-++|+|+++.. .....+...+....+...+|++| +...+
T Consensus 92 ------eidaa--s~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl 162 (486)
T PRK14953 92 ------EIDAA--SNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKI 162 (486)
T ss_pred ------EEeCc--cCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHH
Confidence 00000 0001111 12222222 356679999999754 23445544443333344555544 43333
Q ss_pred ccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 596 CLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 596 a~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
... ......+.+.+++.++....+...+-.. ...-..+.+..|+..++|.+..+.
T Consensus 163 ~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e-gi~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 163 PPTILSRCQRFIFSKPTKEQIKEYLKRICNEE-KIEYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 211 2234678999999999888887765431 112234567788999999775443
No 103
>PRK06620 hypothetical protein; Validated
Probab=97.28 E-value=0.00054 Score=72.44 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=77.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
+.+.|+|++|+|||+|++.+++... . .++. ..+. .. +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------NE-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------ch-------hHH-hcC
Confidence 5689999999999999999877652 1 1221 0000 00 011 123
Q ss_pred eEEEEccchhhhh--hhhhcCCCCCCCCCcEEEEEcccCCcc-------cccCcceeEEecccCHHHHHHHHHHHhcCcc
Q 047071 557 FLLLLDDVWEQIN--LQEVGIPDPSSENVGKIVVASRTVGAC-------LEMDASKLIEVETVSKKEAWELFYEQVGRVI 627 (902)
Q Consensus 557 ~LLVLDDV~d~~~--~~~L~~~l~~~~~GSkIIVTTR~~~va-------~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~ 627 (902)
-+|++||++...+ +..+...+ ...|..||+|++..... ..+.....+++++++.++-..++.+.+.. .
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-~ 163 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-S 163 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-c
Confidence 5788999974322 22221111 13466899999864431 22334558999999999988888776643 1
Q ss_pred cCCCCcchHHHHHHHhCCCcc
Q 047071 628 ELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 628 ~~~~l~~ia~~Ia~~c~GlPL 648 (902)
.-.-.+++..-|++.+.|.--
T Consensus 164 ~l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 164 SVTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred CCCCCHHHHHHHHHHccCCHH
Confidence 112234566677777665443
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.0019 Score=78.99 Aligned_cols=183 Identities=10% Similarity=0.024 Sum_probs=102.9
Q ss_pred CccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhccccccc-ccE-EEEee---ccccCcHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLI-FDV-IILVT---VSRYWSVRKIQNDV 527 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~-Fd~-i~WV~---vs~~~~~~~ll~~I 527 (902)
...++|-+..++.|...+..+.+ ..+.++|+.|+||||+|+.++...-.... ..+ .|-.| ....+++.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi------ 90 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII------ 90 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE------
Confidence 45569999999999999977654 56789999999999999998765421110 000 00000 00000000
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhh-----cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEE-EEcccCCccc-c
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIV-VASRTVGACL-E 598 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkII-VTTR~~~va~-~ 598 (902)
.+ ........++ ++.+.+.+ .+++-++|+|+++.. ..+..|+..+-.......+| +|++...+.. .
T Consensus 91 --ei--daasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 91 --EM--DAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred --EE--eccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 00 0000001111 22232322 356669999999754 34555554443333344444 4544444432 2
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
......+++.+++.++....+...+... .-....+.+..|++.++|.+-
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~ke-gI~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKE-NISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHH
Confidence 2335689999999999988887755431 112223457889999999775
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.26 E-value=0.0011 Score=72.28 Aligned_cols=181 Identities=8% Similarity=-0.004 Sum_probs=110.4
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEE-EEeeccccCcHHHHHHHHHHhcCc
Q 047071 455 FVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVI-ILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i-~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
+..+|-+..++-|.+.+.....+....+|++|.|||+-|..++...--.+.|.+. +=.+++..-... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~------- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE------- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-------
Confidence 4568999999999998877778899999999999999999888766545566543 333444432221 0000
Q ss_pred CCCCCCcchhhHHHHHhhh--cCce-eEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcc-cCCcccc-cCcceeEE
Q 047071 534 YCEDSEADSDVAEKLFHFL--NGKK-FLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASR-TVGACLE-MDASKLIE 606 (902)
Q Consensus 534 ~~~~~~~~~~l~~~L~~~L--~~kr-~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR-~~~va~~-~~~~~~~~ 606 (902)
...+...+........ ..++ -.+|||+++.+ +.|..+...+......++.|+.+. -..+... ......|.
T Consensus 108 ---Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 108 ---KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred ---hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 0001111111110000 0123 47899999875 568888766655555566554443 3333211 12245678
Q ss_pred ecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 607 VETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 607 L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
.++|.+++...-+...+-. ..-+-..+..+.|++.++|.-
T Consensus 185 Fk~L~d~~iv~rL~~Ia~~-E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 185 FKKLKDEDIVDRLEKIASK-EGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred CCCcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHcCCcH
Confidence 8999999999888887765 223333456788999888854
No 106
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.26 E-value=4.3e-05 Score=85.06 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=48.1
Q ss_pred CCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 824 AGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 824 ~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
..+..+|.|..+..|+.|.+..+.|+.+|.. ..|.+|.+|||+ ...++++|+. ++.|++|.+||||++.|..||.+
T Consensus 216 Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR-dNklke~Pde-~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 216 NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR-DNKLKEVPDE-ICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc-ccccccCchH-HHHhhhhhhhcccCCccccCCcc
Confidence 3455566666666666666666666666655 466666666666 4556666666 66666666666666666666654
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.24 E-value=0.0023 Score=80.75 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=85.4
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccc---c-ccE-EEEeeccccCcHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKL---I-FDV-IILVTVSRYWSVRKIQNDVL 528 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~---~-Fd~-i~WV~vs~~~~~~~ll~~Il 528 (902)
.++.+||+.++.+++..|......-+.++|++|+|||+||+.++....-.. . ... +++++++. ++
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~---- 246 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 246 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----
Confidence 457899999999999999776556677999999999999999887652110 0 112 22232221 10
Q ss_pred HhcCcCCCCCCcchhhHHHHHhhh--cCceeEEEEccchhhh---------hhhhhcCCCCCCCCC-cEEEEEcccCCcc
Q 047071 529 RQLPLYCEDSEADSDVAEKLFHFL--NGKKFLLLLDDVWEQI---------NLQEVGIPDPSSENV-GKIVVASRTVGAC 596 (902)
Q Consensus 529 ~~L~~~~~~~~~~~~l~~~L~~~L--~~kr~LLVLDDV~d~~---------~~~~L~~~l~~~~~G-SkIIVTTR~~~va 596 (902)
.. .......+.....+.+.+ .+.+.+|++|++.... +...+..+ ....| -++|-+|......
T Consensus 247 ag----~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp--~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 247 AG----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKP--ALARGELHCVGATTLDEYR 320 (857)
T ss_pred hc----cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcc--hhhcCCCeEEEcCCCHHHH
Confidence 00 000012222222222222 2468999999997542 11222222 22233 3455444433321
Q ss_pred -------cccCcceeEEecccCHHHHHHHHHHHh
Q 047071 597 -------LEMDASKLIEVETVSKKEAWELFYEQV 623 (902)
Q Consensus 597 -------~~~~~~~~~~L~~Ls~ees~~LF~~~a 623 (902)
........+.+...+.++...++....
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 011123467778788999999886654
No 108
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.24 E-value=0.0009 Score=63.06 Aligned_cols=88 Identities=18% Similarity=-0.004 Sum_probs=49.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCc-
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGK- 555 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~k- 555 (902)
..+.|+|++|+||||+++.++.... .....+++++.+........... ...................+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999988773 22234566655544332222211 111111111112223333444444444
Q ss_pred eeEEEEccchhhh
Q 047071 556 KFLLLLDDVWEQI 568 (902)
Q Consensus 556 r~LLVLDDV~d~~ 568 (902)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997653
No 109
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.20 E-value=0.0021 Score=76.07 Aligned_cols=158 Identities=12% Similarity=0.101 Sum_probs=88.1
Q ss_pred CCccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccc---cccEEEEeeccc
Q 047071 453 GLFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKL---IFDVIILVTVSR 516 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~---~Fd~i~WV~vs~ 516 (902)
....+.|.+..+++|.+.+.- ..++-+.++|++|.|||++|+.+++...... .+....|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 344567899888888887521 2356689999999999999999998763211 112334444332
Q ss_pred cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh---------h-----hhhhcCCC
Q 047071 517 YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI---------N-----LQEVGIPD 577 (902)
Q Consensus 517 ~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~---------~-----~~~L~~~l 577 (902)
. + ++..... ........+.+.. .+++++|+||+++... + +..+...+
T Consensus 260 ~----e----Ll~kyvG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P----E----LLNKYVG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h----h----hcccccc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 1 1111000 1111122222221 3478999999997431 1 12232222
Q ss_pred CCC--CCCcEEEEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhc
Q 047071 578 PSS--ENVGKIVVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 578 ~~~--~~GSkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
... ..+..||.||....... ...-...+.++..+.++..++|..+..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 221 12344555554433211 112245689999999999999988764
No 110
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.19 E-value=0.0019 Score=71.27 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=68.9
Q ss_pred EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCcee
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKF 557 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~ 557 (902)
-+.++|++|+|||++|+.+++............|+.++. .++ +..+... +.......+. .. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~-----~~~~~~~~~~-~a--~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH-----TAPKTKEILK-RA--MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc-----chHHHHHHHH-Hc--cCc
Confidence 578999999999999977765442111111112333332 122 2221111 1111112222 22 336
Q ss_pred EEEEccchhh-----------hhhhhhcCCCCCCCCCcEEEEEcccCCccccc--------CcceeEEecccCHHHHHHH
Q 047071 558 LLLLDDVWEQ-----------INLQEVGIPDPSSENVGKIVVASRTVGACLEM--------DASKLIEVETVSKKEAWEL 618 (902)
Q Consensus 558 LLVLDDV~d~-----------~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~--------~~~~~~~L~~Ls~ees~~L 618 (902)
+|+||++... +.+..+...+.....+.+||+++......... .....+.+++++.+|-..+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 12334433333334455666666432211100 1135689999999999999
Q ss_pred HHHHhcC
Q 047071 619 FYEQVGR 625 (902)
Q Consensus 619 F~~~af~ 625 (902)
+...+-.
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8877643
No 111
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.17 E-value=0.0023 Score=71.61 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=100.9
Q ss_pred ccchHHHHHHHHHhhcCCC---ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCc
Q 047071 457 SRSTERTVLKILQCISGVE---AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~~~---~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
..+|+.++..+..++.+.. +..|-|+|-.|.|||.+.+.+.+... . ..+|+++-+.++...++..|+.+...
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHHHHHhcc
Confidence 4789999999999997632 34568999999999999999988772 2 24899999999999999999999852
Q ss_pred CCCCC-------CcchhhHHHHHh--hhc--CceeEEEEccchhhhhhhhhc--------CCCCCCCCCcEEEEEcccCC
Q 047071 534 YCEDS-------EADSDVAEKLFH--FLN--GKKFLLLLDDVWEQINLQEVG--------IPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 534 ~~~~~-------~~~~~l~~~L~~--~L~--~kr~LLVLDDV~d~~~~~~L~--------~~l~~~~~GSkIIVTTR~~~ 594 (902)
...++ .+..+....+.+ ... ++.++|||||++...+.+.+. ..+ ..+.. +|+++-...
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~--~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL--NEPTI-VIILSAPSC 159 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh--CCCce-EEEEecccc
Confidence 22111 122333334443 222 468999999998765543321 111 12222 333333211
Q ss_pred ---cccccCcce--eEEecccCHHHHHHHHHH
Q 047071 595 ---ACLEMDASK--LIEVETVSKKEAWELFYE 621 (902)
Q Consensus 595 ---va~~~~~~~--~~~L~~Ls~ees~~LF~~ 621 (902)
....+|+.. ++....-+.++-..++.+
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 122234433 345667777777777754
No 112
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.17 E-value=0.0019 Score=74.78 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=71.8
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcC
Q 047071 455 FVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLY 534 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~ 534 (902)
..+++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.......|+.+.|+.+....+..+++..+ ...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~ 248 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RPN 248 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CCC
Confidence 3468889999999999864 3577889999999999999999887655678888999998887766655422 111
Q ss_pred CCCCC-cchhhHHHHHhhhc--CceeEEEEccchhh
Q 047071 535 CEDSE-ADSDVAEKLFHFLN--GKKFLLLLDDVWEQ 567 (902)
Q Consensus 535 ~~~~~-~~~~l~~~L~~~L~--~kr~LLVLDDV~d~ 567 (902)
...-. ...-..+.+..... +++++||+|++...
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 10000 00111222222222 46899999998643
No 113
>PLN03150 hypothetical protein; Provisional
Probab=97.16 E-value=0.00044 Score=84.39 Aligned_cols=70 Identities=29% Similarity=0.369 Sum_probs=56.2
Q ss_pred CcccccccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc-cCCCC
Q 047071 831 SLKEWEQAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN-CLPNT 901 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~-~LP~s 901 (902)
.+..+.+|+.|+|++|.+. .+|.. +.|.+|++|+|++|.--..+|++ +++|.+|++|||++|++. .+|.+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCcccccCChH
Confidence 5777888999999998876 67766 88999999999955444478887 899999999999998776 67754
No 114
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.12 E-value=0.00015 Score=84.35 Aligned_cols=73 Identities=27% Similarity=0.399 Sum_probs=67.9
Q ss_pred CC-CcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCCC
Q 047071 829 PP-SLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNTF 902 (902)
Q Consensus 829 lp-~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~sI 902 (902)
+| .+.+++.|.+|||+.|++.+.|.. ...+|+-+|+|+ .++|..||.+.+-+|.-|-+||||+++++.||+.|
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 44 789999999999999999999988 888999999999 78899999998999999999999999999999864
No 115
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.11 E-value=0.0009 Score=78.28 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=85.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
.-+.|+|+.|+|||+|++.+++.... ..-.+++++. ..+...+...+... . ...++..++ ..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-cC
Confidence 46789999999999999999987632 2233455542 23333444433211 1 122333333 34
Q ss_pred eEEEEccchhhhh----hhhhcCCCCC-CCCCcEEEEEcccC---------CcccccCcceeEEecccCHHHHHHHHHHH
Q 047071 557 FLLLLDDVWEQIN----LQEVGIPDPS-SENVGKIVVASRTV---------GACLEMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 557 ~LLVLDDV~d~~~----~~~L~~~l~~-~~~GSkIIVTTR~~---------~va~~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
-+|++||+..... .+.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888999865321 1122111110 12345688888542 12233444578899999999999999887
Q ss_pred hcCcccCCCCcchHHHHHHHhCCC
Q 047071 623 VGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 623 af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
+... ...-..++..-|+..+.|.
T Consensus 284 ~~~~-~~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEAL-SIRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHc-CCCCCHHHHHHHHHhcCCC
Confidence 7541 1122234555566666544
No 116
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.10 E-value=8.7e-05 Score=74.33 Aligned_cols=75 Identities=31% Similarity=0.493 Sum_probs=67.5
Q ss_pred CCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCCC
Q 047071 826 LTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNTF 902 (902)
Q Consensus 826 l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~sI 902 (902)
+..+|.+.++.++..|-|+.+.+..+|.. ..|.+|++|+|. +..++++|.+ |+.|++|++|++.-+++..||.++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-nnqie~lp~~-issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-NNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-cchhhhcChh-hhhchhhhheecchhhhhcCcccc
Confidence 44566777888899999999999998877 999999999999 7889999999 999999999999988999999874
No 117
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00095 Score=82.63 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=87.1
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccc---cc-ccEEEEeeccccCcHHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTK---LI-FDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr---~~-Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
.++++||+.++.++++.|......-+.++|++|+|||+||+.+++..... .. .++.+|.. ++. .++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc
Confidence 34689999999999999977544556789999999999999998653111 11 13444421 111 1111
Q ss_pred hcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhh----------hhhhhhcCCCCCCCCC-cEEEEEcccCCcc-
Q 047071 530 QLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQ----------INLQEVGIPDPSSENV-GKIVVASRTVGAC- 596 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~----------~~~~~L~~~l~~~~~G-SkIIVTTR~~~va- 596 (902)
... ...+.+.....+.+.+ +..+.+|+||+++.. .+...+..++. ..| -++|-+|......
T Consensus 256 ---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 ---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHH
Confidence 000 0112233333333333 346789999999743 11211221111 223 3444444332210
Q ss_pred ------cccCcceeEEecccCHHHHHHHHHHHh
Q 047071 597 ------LEMDASKLIEVETVSKKEAWELFYEQV 623 (902)
Q Consensus 597 ------~~~~~~~~~~L~~Ls~ees~~LF~~~a 623 (902)
....-...+.+++++.++...++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 011234679999999999999998654
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.10 E-value=0.00089 Score=80.24 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=90.4
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
..+.|+|..|+|||.|++.+++.......--.++|++. .++..++...+... . ...+++.+.+ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~----~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----K----GDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----c----HHHHHHHhhc-C
Confidence 35899999999999999999987632111223456643 33444444332211 1 1223333333 3
Q ss_pred eEEEEccchhh---hhhh-hhcCCCCC-CCCCcEEEEEcccCC---------cccccCcceeEEecccCHHHHHHHHHHH
Q 047071 557 FLLLLDDVWEQ---INLQ-EVGIPDPS-SENVGKIVVASRTVG---------ACLEMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 557 ~LLVLDDV~d~---~~~~-~L~~~l~~-~~~GSkIIVTTR~~~---------va~~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
-+|||||+... ..|+ .|...+.. ...|..|||||+... +...+.....+.|++.+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 58899999643 1121 12211111 123556888887531 2233455678999999999999999988
Q ss_pred hcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 623 VGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 623 af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
+.. ....--.++..-|++.+.+..-.
T Consensus 459 a~~-r~l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 459 AVQ-EQLNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHh-cCCCCCHHHHHHHHHhccCCHHH
Confidence 764 11222345677777776665433
No 119
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0057 Score=73.60 Aligned_cols=189 Identities=10% Similarity=0.017 Sum_probs=107.9
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....++|-+..++.|...+.++.+ ..+.++|+.|+||||+|+.+++..-....... ..++...+ -+.+...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHHcCC
Confidence 345679999999999999977654 46889999999999999999876521111000 00000000 01111110
Q ss_pred CcC-----CCCCCcchhhHHHHHhh-----hcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEccc-CCcccc
Q 047071 532 PLY-----CEDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRT-VGACLE 598 (902)
Q Consensus 532 ~~~-----~~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~ 598 (902)
... .......++.. .+.+. ..+++-++|+|+++... .++.|...+........+|++|.. ..+...
T Consensus 87 ~~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 000 00001122222 12211 23566689999997653 466666555544455666665543 333211
Q ss_pred -cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 599 -MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 599 -~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
......+++.+++.++-...+...+.. ...+-..+.+..|++.++|.+-.+
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~-egi~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLE-DQIKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 223467899999999998888776643 112223456778999999987533
No 120
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0027 Score=76.71 Aligned_cols=192 Identities=8% Similarity=0.023 Sum_probs=104.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....++|.+..+..|.+.+..+.+ ..+.++|+.|+||||+|+.+++..--....+ ..+++.......|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 445679999999999999987665 4678999999999999999876542111100 00001111111111100
Q ss_pred CcC-----CCCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEE-EcccCCcccc
Q 047071 532 PLY-----CEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVV-ASRTVGACLE 598 (902)
Q Consensus 532 ~~~-----~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIV-TTR~~~va~~ 598 (902)
... .......++ ++.+.+.+ .+++-++|+|+++... ....|...+-.......+|+ ||....+...
T Consensus 87 ~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 87 SVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 000 000001111 12222222 2455689999997653 34455444433334555554 5444444322
Q ss_pred -cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc-chhhhh
Q 047071 599 -MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP-LLIIVT 653 (902)
Q Consensus 599 -~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP-LAL~vl 653 (902)
......+++.+++.++....+...+.. ....-..+....|++.++|.. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~-egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQ-EGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223567889999999888777765543 111223456778888888866 344443
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.07 E-value=0.0011 Score=63.14 Aligned_cols=22 Identities=50% Similarity=0.730 Sum_probs=20.5
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999887
No 122
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.04 E-value=0.0079 Score=71.58 Aligned_cols=172 Identities=10% Similarity=0.072 Sum_probs=91.0
Q ss_pred CccccchHHHHHHHHHhh---cC---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHH
Q 047071 454 LFVSRSTERTVLKILQCI---SG---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVR 521 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L---~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~ 521 (902)
...++|.+..++++.+++ .. ...+-+.++|++|+|||+||+.+++... ..| +.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~-----~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCe-----eeccH----H
Confidence 344567766655554433 21 2344588999999999999999987652 222 22211 1
Q ss_pred HHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh------------h----hhhhcCCCCC--CCCC
Q 047071 522 KIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI------------N----LQEVGIPDPS--SENV 583 (902)
Q Consensus 522 ~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~------------~----~~~L~~~l~~--~~~G 583 (902)
++..... + .....+...+.......+.+|+||+++... . ...+...+.. ...+
T Consensus 123 ~~~~~~~---g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFVEMFV---G------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHHHh---c------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1111110 0 011222223333334567899999996431 1 1122222211 1223
Q ss_pred cEEEEEcccCCcc-----cccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 584 GKIVVASRTVGAC-----LEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 584 SkIIVTTR~~~va-----~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
-.||.||...... +...-...+.++..+.++-.++|...+...... .......|++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~--~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA--PDVDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC--cchhHHHHHHhCCCCC
Confidence 4455566543321 111234678899999999999998877542111 1223457888887743
No 123
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0084 Score=71.93 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=89.8
Q ss_pred cchHHHHHHHHHhhc----C--CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 458 RSTERTVLKILQCIS----G--VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 458 VGRe~ele~L~~~L~----~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
+|.++.+++|+++|. . -.-++++++||+|||||+|++.+++.. ...| +-++++.-.|..++-
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al--~Rkf---vR~sLGGvrDEAEIR------- 393 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL--GRKF---VRISLGGVRDEAEIR------- 393 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh--CCCE---EEEecCccccHHHhc-------
Confidence 899999999999983 1 234799999999999999999998877 4555 234444443333331
Q ss_pred CcCCCCCCcchhhHHHHHh---hhcCceeEEEEccchhhh------------------hhhhhcCC-CCCCCCCcE-EEE
Q 047071 532 PLYCEDSEADSDVAEKLFH---FLNGKKFLLLLDDVWEQI------------------NLQEVGIP-DPSSENVGK-IVV 588 (902)
Q Consensus 532 ~~~~~~~~~~~~l~~~L~~---~L~~kr~LLVLDDV~d~~------------------~~~~L~~~-l~~~~~GSk-IIV 588 (902)
+.... =...+-.++.+ ..+.++-|++||.++... |-..|... +.-.-.=|. +.|
T Consensus 394 GHRRT---YIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 394 GHRRT---YIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccccc---ccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 11110 01111122222 334577899999987431 11111110 100011233 445
Q ss_pred EcccCC--c-ccccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 589 ASRTVG--A-CLEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 589 TTR~~~--v-a~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
+|-|.- + +..++...++++.+-+++|-.+.-+++.-.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcch
Confidence 665432 2 233455689999999999998888777643
No 124
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.0081 Score=72.41 Aligned_cols=189 Identities=9% Similarity=-0.020 Sum_probs=105.6
Q ss_pred CCccccchHHHHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....++|.+..++.|.+.+..+. ...+.++|+.|+||||+|+.+....-....-+ ..+++.....+.+....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 44567999999999999997654 45678899999999999999875432111000 01111111122221111
Q ss_pred CcCC-----CCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEE-EcccCCcccc
Q 047071 532 PLYC-----EDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVV-ASRTVGACLE 598 (902)
Q Consensus 532 ~~~~-----~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIV-TTR~~~va~~ 598 (902)
.... ......+ ....+.+. ..+++-++|+|+++.. ..+..|...+........+|+ ||....+...
T Consensus 87 ~~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 1000 0001111 12222222 2356678899999754 345555544433333444454 4444433321
Q ss_pred -cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 599 -MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 599 -~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
......+++.+++.++....+...+... ...-..+.+..|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~e-gi~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKE-GIEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 2235678899999999888887766431 11222456778899998877533
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=96.96 E-value=0.0051 Score=68.03 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=69.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCcee
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKF 557 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~ 557 (902)
.+.++|++|+||||+|+.+++.......-...-|+.++. .++...+. .. ........+.+ . ..-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~~----g~-----~~~~~~~~l~~-a--~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQYI----GH-----TAPKTKEVLKK-A--MGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHHh----cc-----chHHHHHHHHH-c--cCC
Confidence 478899999999999999976542111111111333331 12222111 10 11111112222 1 235
Q ss_pred EEEEccchhh-----------hhhhhhcCCCCCCCCCcEEEEEcccCCccccc--------CcceeEEecccCHHHHHHH
Q 047071 558 LLLLDDVWEQ-----------INLQEVGIPDPSSENVGKIVVASRTVGACLEM--------DASKLIEVETVSKKEAWEL 618 (902)
Q Consensus 558 LLVLDDV~d~-----------~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~--------~~~~~~~L~~Ls~ees~~L 618 (902)
+|+||++... +....+...+.....+.+||+++......... .....+.+++++.++...+
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8999998642 22233333333334456677776533221100 1245789999999999999
Q ss_pred HHHHhcC
Q 047071 619 FYEQVGR 625 (902)
Q Consensus 619 F~~~af~ 625 (902)
+...+..
T Consensus 205 ~~~~l~~ 211 (287)
T CHL00181 205 AKIMLEE 211 (287)
T ss_pred HHHHHHH
Confidence 8877654
No 126
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.95 E-value=0.0015 Score=76.06 Aligned_cols=172 Identities=14% Similarity=0.078 Sum_probs=95.8
Q ss_pred CccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 454 LFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
...+.|.+..+++|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...|-. +..+
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el--~~~fi~---V~~s----- 251 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET--SATFLR---VVGS----- 251 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh--CCCEEE---Eecc-----
Confidence 34568999999988887631 234568899999999999999999866 333311 1111
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh----------------hhhhhcCCCCC--CCC
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI----------------NLQEVGIPDPS--SEN 582 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~~--~~~ 582 (902)
++.. .... .........+.....+.+.+|+||+++... .+..+...+.. ...
T Consensus 252 -eL~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 -ELIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -hhhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1111 1000 011111122222234578899999986421 01111111111 123
Q ss_pred CcEEEEEcccCCcccc-----cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 583 VGKIVVASRTVGACLE-----MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 583 GSkIIVTTR~~~va~~-----~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
+.+||.||........ ......+.+...+.++..++|..++......+ ......++..+.|+-
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~--dvdl~~la~~t~g~s 389 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE--DVDLEEFIMAKDELS 389 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc--CcCHHHHHHhcCCCC
Confidence 5577777765433211 12345789999999999999998765421111 112456666666644
No 127
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.95 E-value=0.00048 Score=57.57 Aligned_cols=43 Identities=30% Similarity=0.488 Sum_probs=38.9
Q ss_pred CCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 858 SELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 858 ~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
++|++|+|++| .++.+|+..+.+|++|++|+|++|+|+.+|+.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~ 43 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD 43 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence 57999999955 89999987799999999999999999998874
No 128
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.012 Score=65.78 Aligned_cols=193 Identities=10% Similarity=0.012 Sum_probs=106.4
Q ss_pred ccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhccccc-------------ccccEEEEeeccccCcH
Q 047071 455 FVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTK-------------LIFDVIILVTVSRYWSV 520 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr-------------~~Fd~i~WV~vs~~~~~ 520 (902)
..++|-+..++.+.+.+.++.+ ....++|+.|+||+++|..+++..--. ..+.-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4578999999999999987764 789999999999999998876543211 11122233321000000
Q ss_pred HHHHHHHHHhcCcCC--CCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcc
Q 047071 521 RKIQNDVLRQLPLYC--EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASR 591 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~--~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR 591 (902)
..+-...+...+... ......++ ++.+.+.+ .+.+-++|+|+++... ....++..+-...+..-|++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 000001111111000 00111122 23343333 3567789999997653 34444433332223333444444
Q ss_pred cCCcccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 592 TVGACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 592 ~~~va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
...+... ......+++.+++.++..+.+...... .........++..++|.|..+..
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----ccchhHHHHHHHHcCCCHHHHHH
Confidence 4444322 234678999999999999999876432 11111136789999999975543
No 129
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.81 E-value=0.0014 Score=84.04 Aligned_cols=82 Identities=26% Similarity=0.322 Sum_probs=60.4
Q ss_pred eeccCCCCC-CCC-CcccccccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 819 LLRAGAGLT-EPP-SLKEWEQAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 819 l~~~~~~l~-~lp-~l~~l~~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
+...+..+. .+| .+..+.+|++|+|++|.+. .+|.. +++++|++|+|++|.-...+|.. +++|++|++|+|++|+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence 333333333 345 4778888999999888764 57766 88889999999877655678888 8899999999999887
Q ss_pred Cc-cCCCC
Q 047071 895 IN-CLPNT 901 (902)
Q Consensus 895 I~-~LP~s 901 (902)
+. .+|..
T Consensus 224 l~~~~p~~ 231 (968)
T PLN00113 224 LSGEIPYE 231 (968)
T ss_pred cCCcCChh
Confidence 66 56653
No 130
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.81 E-value=0.0051 Score=74.61 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred CccccchHHHHHHHHHhhcC-----CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 454 LFVSRSTERTVLKILQCISG-----VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~-----~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++|-+..++++..+|.. ...+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999998865 233579999999999999999998765
No 131
>CHL00176 ftsH cell division protein; Validated
Probab=96.80 E-value=0.02 Score=69.88 Aligned_cols=170 Identities=11% Similarity=0.059 Sum_probs=92.5
Q ss_pred CccccchHHHHHHHHHh---hcC---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHH
Q 047071 454 LFVSRSTERTVLKILQC---ISG---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVR 521 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~---L~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~ 521 (902)
...++|.+..++++.+. |.. ...+-+.++|++|+|||+||+.+++... .. |+.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----H
Confidence 34456766655555443 322 1245689999999999999999987652 22 222221 1
Q ss_pred HHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh----------------hhhhhcCCCCC--CCCC
Q 047071 522 KIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI----------------NLQEVGIPDPS--SENV 583 (902)
Q Consensus 522 ~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~~--~~~G 583 (902)
++..... + .........+.......+++|+||+++... .+..+...+.. ...+
T Consensus 251 ~f~~~~~---g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEMFV---G------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHhh---h------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1111100 0 011222233344445678999999996431 12233322221 2234
Q ss_pred cEEEEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCC
Q 047071 584 GKIVVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGG 645 (902)
Q Consensus 584 SkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~G 645 (902)
-.||.||....... ...-...+.++..+.++-.++|+.++..... ........+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--~~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--SPDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--chhHHHHHHHhcCCC
Confidence 45666665533211 1122467889999999999999887754111 112235667777777
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.0098 Score=67.00 Aligned_cols=95 Identities=9% Similarity=0.025 Sum_probs=60.0
Q ss_pred CceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccC-Cccc-ccCcceeEEecccCHHHHHHHHHHHhcCcccC
Q 047071 554 GKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTV-GACL-EMDASKLIEVETVSKKEAWELFYEQVGRVIEL 629 (902)
Q Consensus 554 ~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~-~va~-~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~ 629 (902)
+++-++|+|+++.. .....+...+-....++.+|++|.+. .+.. .......+.+.+++.+++...+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 34445678999865 33455544443333566677777664 3332 2234577999999999999888765311
Q ss_pred CCCcchHHHHHHHhCCCcchhhhh
Q 047071 630 PHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 630 ~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
...+.+..++..++|.|+.+..+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 12334567889999999765544
No 133
>PRK08116 hypothetical protein; Validated
Probab=96.78 E-value=0.0016 Score=71.22 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=56.4
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
.-+.|+|..|+|||.||..+++.... ....++|++ ..+++..+...+.... ......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSSG------KEDENEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhccc------cccHHHHHHHhcCCC
Confidence 35889999999999999999998732 233456664 3344555544332211 111222334444444
Q ss_pred eEEEEccch--hhhhhhh--hcCCCCC-CCCCcEEEEEccc
Q 047071 557 FLLLLDDVW--EQINLQE--VGIPDPS-SENVGKIVVASRT 592 (902)
Q Consensus 557 ~LLVLDDV~--d~~~~~~--L~~~l~~-~~~GSkIIVTTR~ 592 (902)
||||||+. ...+|.. +...+.. ...+..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999994 2233322 2211111 2345568999863
No 134
>PRK10536 hypothetical protein; Provisional
Probab=96.76 E-value=0.0035 Score=67.69 Aligned_cols=60 Identities=20% Similarity=0.077 Sum_probs=44.0
Q ss_pred ccCCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 451 EFGLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
.+....+.+|......++.+|.+. .++.+.|++|.|||+||..+..+.-....|+.++..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 344556688999999999988764 499999999999999999987653213446554443
No 135
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.73 E-value=0.00089 Score=74.96 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCceeeccCCCCCCCC-CcccccccEEEeccCC-----------------------CcccCCCC--CCCCCccEEEeecC
Q 047071 815 GHRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDN-----------------------ELCTLPEK--PSCSELSVLFLQRN 868 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~-----------------------~i~~LP~~--~~L~~Lr~L~Ls~c 868 (902)
+..++......+..+| .++.+..|+.|+++.+ ++..+|.+ .++.+|.+|+|+ +
T Consensus 436 kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~-n 514 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ-N 514 (565)
T ss_pred cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC-C
Confidence 3444445555555555 4555555666666644 44456655 778999999999 8
Q ss_pred CCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 869 YQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 869 ~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
.++..+|+. +|||.+|++|+|.|+.|. .|.
T Consensus 515 Ndlq~IPp~-LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 515 NDLQQIPPI-LGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred CchhhCChh-hccccceeEEEecCCccC-CCH
Confidence 889999999 999999999999999988 664
No 136
>PRK08118 topology modulation protein; Reviewed
Probab=96.72 E-value=0.0011 Score=67.41 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=28.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhccccc-ccccEEEE
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTK-LIFDVIIL 511 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr-~~Fd~i~W 511 (902)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999887543 56777775
No 137
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.016 Score=62.78 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=98.0
Q ss_pred CccccchHHHHHHHHHhhc-----CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCIS-----GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVL 528 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~-----~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il 528 (902)
....||.++.+++|.=++. ++.+.-+.++|++|.||||||.-+++...+ .+. +..+....-..-+..++
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV--NLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--CeE----ecccccccChhhHHHHH
Confidence 4456999999988877774 356778999999999999999999988733 221 11111111111112222
Q ss_pred HhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh----h-----hhhhcCC-CCCCCCCcE-----------EE
Q 047071 529 RQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI----N-----LQEVGIP-DPSSENVGK-----------IV 587 (902)
Q Consensus 529 ~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~----~-----~~~L~~~-l~~~~~GSk-----------II 587 (902)
..+ . +.=+|.+|.+.... + .+.+... ....++++| |=
T Consensus 99 t~L---------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNL---------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcC---------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 222 2 22244456554221 0 1111000 011233333 23
Q ss_pred EEcccCCcccccC--cceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 588 VASRTVGACLEMD--ASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 588 VTTR~~~va~~~~--~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
-|||.-.+...+. -.-+.+++.-+.+|-.+...+.+.. -.-.-.++.+.+|++...|-|--++
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcHHHH
Confidence 5888765543322 1346788899999999999888754 2223335678999999999996443
No 138
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.69 E-value=0.041 Score=63.24 Aligned_cols=195 Identities=12% Similarity=0.141 Sum_probs=120.7
Q ss_pred hHHHHHHHHHhhcCCCceEEEEecCCCCChhhHH-HHHhhcccccccccEEEEeecccc---CcHHHHHHHHHHhcCcCC
Q 047071 460 TERTVLKILQCISGVEAGKIGIHGISGIGKTTVL-KALISYPKTKLIFDVIILVTVSRY---WSVRKIQNDVLRQLPLYC 535 (902)
Q Consensus 460 Re~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd~i~WV~vs~~---~~~~~ll~~Il~~L~~~~ 535 (902)
|.+..++|..||.+..-..|.|.||-|.||+.|+ .++..+.+ .++.+++.+- .+-..++..++.+++-..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999877789999999999999999 77766542 1555554332 234455555555553211
Q ss_pred ------------------------CCCCcchhhHHHHHh----hhc--------------------------CceeEEEE
Q 047071 536 ------------------------EDSEADSDVAEKLFH----FLN--------------------------GKKFLLLL 561 (902)
Q Consensus 536 ------------------------~~~~~~~~l~~~L~~----~L~--------------------------~kr~LLVL 561 (902)
.-..+.+.....+.. .|+ .++-+|||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 111233322222211 111 13679999
Q ss_pred ccchhh-----------hhhhhhcCCCCCCCCCcEEEEEcccCCccc----cc--CcceeEEecccCHHHHHHHHHHHhc
Q 047071 562 DDVWEQ-----------INLQEVGIPDPSSENVGKIVVASRTVGACL----EM--DASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 562 DDV~d~-----------~~~~~L~~~l~~~~~GSkIIVTTR~~~va~----~~--~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
||.... .+|...+. ..+-.+||++|-+..... .+ ...+.+.|...+++.|..+...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 997432 34544322 234567898887765432 22 2456789999999999999998876
Q ss_pred CcccC-------------------CCCcchHHHHHHHhCCCcchhhhhcccccccchhh
Q 047071 625 RVIEL-------------------PHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVL 664 (902)
Q Consensus 625 ~~~~~-------------------~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~ 664 (902)
..... .....-....+..+||=-.-|..+++.++...++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 52110 12333455667777888888888887777764443
No 139
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.69 E-value=0.017 Score=72.35 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=36.3
Q ss_pred ccchHHHHHHHHHhhcC------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 457 SRSTERTVLKILQCISG------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.+..++.|..++.. ....++.++|++|+|||++|+.+++..
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999998886631 234589999999999999999998876
No 140
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.68 E-value=0.0018 Score=83.04 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=66.7
Q ss_pred CceeeccCCCCC-CCC-CcccccccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLT-EPP-SLKEWEQAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~-~lp-~l~~l~~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+. .+| .+.++++|++|+|++|.+. .+|.. +++.+|++|+|++|.-...+|.. +++|.+|++|+|+
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECc
Confidence 344444444443 355 5788999999999999875 47776 89999999999976655689998 9999999999999
Q ss_pred CCCCc-cCCCC
Q 047071 892 KTRIN-CLPNT 901 (902)
Q Consensus 892 ~c~I~-~LP~s 901 (902)
+|++. .+|.+
T Consensus 245 ~n~l~~~~p~~ 255 (968)
T PLN00113 245 YNNLTGPIPSS 255 (968)
T ss_pred CceeccccChh
Confidence 99776 56654
No 141
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.66 E-value=0.025 Score=66.93 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=90.5
Q ss_pred CccccchHHHHHHHHHhh---cC-------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHH
Q 047071 454 LFVSRSTERTVLKILQCI---SG-------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKI 523 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L---~~-------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~l 523 (902)
...+.|.+..++.+.... .. ..++-|.++|++|.|||.+|+.+++... ..| +-++.+ .+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~------~l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVG------KL 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhH------Hh
Confidence 345577776666655422 11 2456789999999999999999988752 222 112111 11
Q ss_pred HHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh--------------hhhhcCCCCCCCCCcEEEEE
Q 047071 524 QNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN--------------LQEVGIPDPSSENVGKIVVA 589 (902)
Q Consensus 524 l~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~--------------~~~L~~~l~~~~~GSkIIVT 589 (902)
..... ..+...+...+...-...+++|+||+++.... ...+...+.....+--||.|
T Consensus 296 ----~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 ----FGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ----ccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 11000 00111222222222235789999999974210 11111111112223335556
Q ss_pred cccCCcc-----cccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 590 SRTVGAC-----LEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 590 TR~~~va-----~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
|.+.... +...-...+.++..+.++-.++|..+.....+..........+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 6544321 111234678899999999999998887652211111223566667666643
No 142
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.027 Score=63.21 Aligned_cols=179 Identities=13% Similarity=0.015 Sum_probs=95.3
Q ss_pred HHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccE-----EEEeeccccCcHHHHHHHHHHhcCcCC
Q 047071 462 RTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDV-----IILVTVSRYWSVRKIQNDVLRQLPLYC 535 (902)
Q Consensus 462 ~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~-----i~WV~vs~~~~~~~ll~~Il~~L~~~~ 535 (902)
...+.+...+..+.+ ..+.+.|+.|+||+++|..+++..-......+ +-|+..+..+|+..+. .....
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------~~p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------FIPNR 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------cCCCc
Confidence 345667777766554 46899999999999999888754421111110 0011101111100000 00000
Q ss_pred CC-----CCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEccc-CCcccc-cCc
Q 047071 536 ED-----SEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRT-VGACLE-MDA 601 (902)
Q Consensus 536 ~~-----~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~-~~~ 601 (902)
.. .... +.++.+.+.+ .+++-++|||+++... .-..++..+-....++.+|++|.+ ..+... ...
T Consensus 85 ~~~k~~~~I~i-dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVI-EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccH-HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 00 0011 1222233322 2456799999998653 233343333333446666666654 444322 234
Q ss_pred ceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhc
Q 047071 602 SKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTG 654 (902)
Q Consensus 602 ~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg 654 (902)
...+.+.+++.+++...+... + .....+..++..++|.|+.+..+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~-~------~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQ-G------VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHc-C------CChHHHHHHHHHcCCCHHHHHHHh
Confidence 578899999999998888653 1 112336678999999998665443
No 143
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.54 E-value=0.001 Score=68.18 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=19.8
Q ss_pred CCCCCCcccccccEEEeccCCCcccCCCCC-CCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 826 LTEPPSLKEWEQAKFIFLMDNELCTLPEKP-SCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 826 l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~-~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
++..|.+.+..+++.|+|.++.|..+...+ .|.+|+.|+|+ +..|+.++. +..|.+|++|+|+++.|+.+++
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLS-NNQITKLEG--LPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-T-TS--S--TT------TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccccccccccccchhhhhcCCCEEECC-CCCCccccC--ccChhhhhhcccCCCCCCcccc
Confidence 445566777778999999999999887775 78999999999 777999985 8999999999999999988753
No 144
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.036 Score=65.38 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=91.3
Q ss_pred ccCCccccchHHHHHHHHHhhcC------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 451 EFGLFVSRSTERTVLKILQCISG------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~~------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
+.....+=|.++.+.+|..++.. ..++-|.++|++|.|||.||+.+++.. .-.| +.++.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vPf-----~~isAp- 257 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVPF-----LSISAP- 257 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCce-----Eeecch-
Confidence 33455567899998888887732 246778999999999999999999887 3333 333322
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--------hh-----hhhhc---CCCCCC-C
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--------IN-----LQEVG---IPDPSS-E 581 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--------~~-----~~~L~---~~l~~~-~ 581 (902)
+|+..+. ..+.+.+.+.+.+.-..-++++++|+++-. .+ ...|+ ..+... .
T Consensus 258 -------eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 258 -------EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred -------hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 2222222 223444444444555678999999998632 00 11222 222211 1
Q ss_pred CCc-EEEE--EcccCCcc---cccC-cceeEEecccCHHHHHHHHHHHhcC
Q 047071 582 NVG-KIVV--ASRTVGAC---LEMD-ASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 582 ~GS-kIIV--TTR~~~va---~~~~-~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
.|- .++| |+|-..+- +..| -...|.|...++..-.+++...+-+
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 122 2333 44544432 1222 2456788888888888888777655
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.47 E-value=0.017 Score=61.88 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=38.4
Q ss_pred cCCccccchHHHHHHHHHhh----cCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 452 FGLFVSRSTERTVLKILQCI----SGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L----~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+.++|.+..++.|++-. ......-+.+||..|.|||+|++.+.+..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 44456799999988887643 33455678889999999999999998766
No 146
>PRK12377 putative replication protein; Provisional
Probab=96.44 E-value=0.01 Score=64.20 Aligned_cols=74 Identities=22% Similarity=0.229 Sum_probs=44.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
+...+.|+|.+|+|||.||..+++... .....+.++++. +++..+-..... ..... .+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-c
Confidence 346789999999999999999998873 333335666443 344444332211 00111 122222 3
Q ss_pred ceeEEEEccch
Q 047071 555 KKFLLLLDDVW 565 (902)
Q Consensus 555 kr~LLVLDDV~ 565 (902)
+--||||||+.
T Consensus 163 ~~dLLiIDDlg 173 (248)
T PRK12377 163 KVDLLVLDEIG 173 (248)
T ss_pred CCCEEEEcCCC
Confidence 55699999994
No 147
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.083 Score=59.17 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHH
Q 047071 456 VSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRK 522 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ 522 (902)
.+=|-++.+++|...+.- +.++=|.++|++|.|||-||++|++.- ...| +.+..+ +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T--~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT--DATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CceE-----EEeccH----H
Confidence 345788888888887631 367788999999999999999999877 3333 333222 1
Q ss_pred HHHHHHHhcCcCCCCCCcchhhHHHHHhhhc-CceeEEEEccchhh-------------h---hhhhhcCCCCCC--CCC
Q 047071 523 IQNDVLRQLPLYCEDSEADSDVAEKLFHFLN-GKKFLLLLDDVWEQ-------------I---NLQEVGIPDPSS--ENV 583 (902)
Q Consensus 523 ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~-~kr~LLVLDDV~d~-------------~---~~~~L~~~l~~~--~~G 583 (902)
+.+..+ + ....++..+.+.-+ +.++.|.+|.++.. + ..-.|+..+..+ ...
T Consensus 221 lVqKYi---G-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQKYI---G-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHHh---c-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 111111 1 33445555555554 56889999988632 1 122233333322 345
Q ss_pred cEEEEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 584 GKIVVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 584 SkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
-|||..|....+.. .-.-...+++..-+.+.-.++|+-++....-.+. --.+.|++.|.|.-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d--vd~e~la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD--VDLELLARLTEGFS 357 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC--cCHHHHHHhcCCCc
Confidence 68888887655532 1123567788866666677888777765111111 12456777777654
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.40 E-value=0.0099 Score=68.24 Aligned_cols=129 Identities=20% Similarity=0.166 Sum_probs=80.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhccccccccc--EEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFD--VIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd--~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
...+.|+|..|.|||.|++.+++... .... .+++++ .......++..+.. .....+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh-
Confidence 56899999999999999999998873 3333 344442 23333333333221 2233455555
Q ss_pred CceeEEEEccchhhh-------hhhhhcCCCCCCCCCcEEEEEcccCCc---------ccccCcceeEEecccCHHHHHH
Q 047071 554 GKKFLLLLDDVWEQI-------NLQEVGIPDPSSENVGKIVVASRTVGA---------CLEMDASKLIEVETVSKKEAWE 617 (902)
Q Consensus 554 ~kr~LLVLDDV~d~~-------~~~~L~~~l~~~~~GSkIIVTTR~~~v---------a~~~~~~~~~~L~~Ls~ees~~ 617 (902)
.-=++++||++-.. .+-.+...+. ..|-.||+|++...- ...+...-.+.+.+++.+....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 34488999997532 1222222222 234489999965332 2334556789999999999999
Q ss_pred HHHHHhcC
Q 047071 618 LFYEQVGR 625 (902)
Q Consensus 618 LF~~~af~ 625 (902)
++.+.+..
T Consensus 252 iL~kka~~ 259 (408)
T COG0593 252 ILRKKAED 259 (408)
T ss_pred HHHHHHHh
Confidence 99887654
No 149
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.40 E-value=0.00085 Score=81.78 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=67.2
Q ss_pred CCCCCCC-CcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 824 AGLTEPP-SLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 824 ~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
..+..+| .+..+.+|+.|.++++.|..+|.. +++.+|++|+|. |+.+..+|.+ +.+|++|++||+|++.+...|.
T Consensus 55 n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~-~~~lknl~~LdlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 55 NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK-NNRLQSLPAS-ISELKNLQYLDLSFNHFGPIPL 131 (1081)
T ss_pred cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheec-cchhhcCchh-HHhhhcccccccchhccCCCch
Confidence 3445556 577888999999999999999977 899999999999 9999999999 9999999999999998888875
No 150
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.39 E-value=0.004 Score=66.78 Aligned_cols=36 Identities=44% Similarity=0.605 Sum_probs=29.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV 514 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v 514 (902)
-.++|+|..|.|||||+..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEec
Confidence 367799999999999999998776 778888777643
No 151
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.036 Score=62.52 Aligned_cols=156 Identities=8% Similarity=-0.050 Sum_probs=84.1
Q ss_pred ccc-hHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcC
Q 047071 457 SRS-TERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLY 534 (902)
Q Consensus 457 ~VG-Re~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~ 534 (902)
++| -+..++.|.+.+..+.+ ....++|+.|+||||+|..+.+..--....... .++.....+.+... ..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~-~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSG-NHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcC-CCC
Confidence 456 66677778888766554 567999999999999998886543211100000 00000011111000 000
Q ss_pred C-------CCCCcchhhHHHHHhh-----hcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Cccc-c
Q 047071 535 C-------EDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GACL-E 598 (902)
Q Consensus 535 ~-------~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va~-~ 598 (902)
+ ......++... +.+. ..+.+-++|+|+++... ....++..+.....++.+|++|.+. .+.. .
T Consensus 79 D~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0 00011222222 2222 23455679999997653 3455555554445567777776553 3322 2
Q ss_pred cCcceeEEecccCHHHHHHHHHH
Q 047071 599 MDASKLIEVETVSKKEAWELFYE 621 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~ 621 (902)
......+++.+++.++....+..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 23467899999999999887765
No 152
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.03 Score=67.09 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=88.9
Q ss_pred ccchHHHHHHHHHhhcC------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 457 SRSTERTVLKILQCISG------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
-.|.++-+++|+++|.- -+-++++.+|++|||||.+|+.++.-. ...| +-++++.-.|..++-.
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL--nRkF---fRfSvGG~tDvAeIkG----- 482 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL--NRKF---FRFSVGGMTDVAEIKG----- 482 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh--CCce---EEEeccccccHHhhcc-----
Confidence 38999999999999831 345799999999999999999998877 3333 2345666555554421
Q ss_pred cCcCCCCCCcchhhHHHHHhhh---cCceeEEEEccchhhh---------hhhhhcCC----------CCCCCCCcEEE-
Q 047071 531 LPLYCEDSEADSDVAEKLFHFL---NGKKFLLLLDDVWEQI---------NLQEVGIP----------DPSSENVGKIV- 587 (902)
Q Consensus 531 L~~~~~~~~~~~~l~~~L~~~L---~~kr~LLVLDDV~d~~---------~~~~L~~~----------l~~~~~GSkII- 587 (902)
.... =...+-.++.+.| +-.+-|+.||.|+... .+-+++.+ +.-.-.=|+|+
T Consensus 483 --HRRT---YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 483 --HRRT---YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred --ccee---eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 1110 1112222333333 4466788999987431 11111111 11111235665
Q ss_pred EEcccC--Cc-ccccCcceeEEecccCHHHHHHHHHHHhc
Q 047071 588 VASRTV--GA-CLEMDASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 588 VTTR~~--~v-a~~~~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
|.|-|. .+ ....+....++|.+-..+|-..+-.++.-
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 444432 11 11123457889998888888777666553
No 153
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.34 E-value=0.03 Score=70.01 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=83.8
Q ss_pred ccchHHHHHHHHHhhcC------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 457 SRSTERTVLKILQCISG------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
.+|.+..++.|+.+|.. ....++.++|++|+||||+|+.++... ...|-. ++++...+..++...-...
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l--~~~~~~---i~~~~~~d~~~i~g~~~~~ 398 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT--GRKYVR---MALGGVRDEAEIRGHRRTY 398 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh--CCCEEE---EEcCCCCCHHHhccchhcc
Confidence 48999999999988742 244689999999999999999998765 333322 2233322332221111000
Q ss_pred cCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh------hhhhcCCCCC--------------CCCCcEEEEEc
Q 047071 531 LPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN------LQEVGIPDPS--------------SENVGKIVVAS 590 (902)
Q Consensus 531 L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~------~~~L~~~l~~--------------~~~GSkIIVTT 590 (902)
.+ . ........+.. ....+-+|+||.++.... ...+...+.. ..-+..++|+|
T Consensus 399 ~g-----~-~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 399 IG-----S-MPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred CC-----C-CCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 00 0 11222222322 222345788999864321 1222211110 01122344444
Q ss_pred cc-CCccc-ccCcceeEEecccCHHHHHHHHHHHhc
Q 047071 591 RT-VGACL-EMDASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 591 R~-~~va~-~~~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
-+ ..+.. ..+...++++.+++.++-.++.+.+..
T Consensus 472 aN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 43 32211 123346789999999999888877664
No 154
>PRK08181 transposase; Validated
Probab=96.31 E-value=0.0025 Score=69.71 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=44.1
Q ss_pred HhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHH
Q 047071 469 QCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKL 548 (902)
Q Consensus 469 ~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L 548 (902)
+|+. ...-+.|+|++|+|||.||..+++... .....+.|++ ..+++..+..... ..+....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~---- 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVARR-----ELQLESA---- 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHHh-----CCcHHHH----
Confidence 4553 234589999999999999999987652 2233445553 3444444433211 0112222
Q ss_pred HhhhcCceeEEEEccch
Q 047071 549 FHFLNGKKFLLLLDDVW 565 (902)
Q Consensus 549 ~~~L~~kr~LLVLDDV~ 565 (902)
.+.+. +.-||||||+.
T Consensus 162 l~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 162 IAKLD-KFDLLILDDLA 177 (269)
T ss_pred HHHHh-cCCEEEEeccc
Confidence 22222 34599999995
No 155
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.24 E-value=0.036 Score=69.23 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=93.0
Q ss_pred cCCccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 452 FGLFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
.....+.|.+..+++|.+++.- ...+-+.++|++|+|||+||+.+++.. ...| +.++..
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~--- 246 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGP--- 246 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecH---
Confidence 4445578999888888777621 234678899999999999999998865 2222 222211
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh-------------hhhhhcCCCCC-CCCCc
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI-------------NLQEVGIPDPS-SENVG 584 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~-------------~~~~L~~~l~~-~~~GS 584 (902)
++ .... .......+...+.....+.+.+|+||+++... ....+...+.. ...+.
T Consensus 247 ---~i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 ---EI----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ---HH----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11 1100 00011222223333334567899999986421 01122222211 12233
Q ss_pred EEEE-EcccCC-ccccc----CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 585 KIVV-ASRTVG-ACLEM----DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 585 kIIV-TTR~~~-va~~~----~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
.++| ||.... +...+ .-...+.+...+.++-.+++.......... .......+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~--~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA--EDVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc--cccCHHHHHHhCCCCC
Confidence 4455 443322 21111 123467888888888888888655331111 1223577888887764
No 156
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.22 E-value=0.019 Score=56.34 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=30.3
Q ss_pred EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
++.|+|++|+||||++..++... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 46899999999999999998766 23445677887665543
No 157
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.19 E-value=0.0037 Score=49.12 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=33.4
Q ss_pred cccEEEeccCCCcccCCC-CCCCCCccEEEeecCCCCceeCh
Q 047071 836 EQAKFIFLMDNELCTLPE-KPSCSELSVLFLQRNYQLKVIPM 876 (902)
Q Consensus 836 ~~Lr~L~L~~~~i~~LP~-~~~L~~Lr~L~Ls~c~~L~~LP~ 876 (902)
++|++|++++|++..+|. .++|++|++|+|++| .++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 478999999999999999 699999999999955 6887775
No 158
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.16 E-value=0.0043 Score=71.24 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=38.7
Q ss_pred eccCCCCCCCCCcccccccEEEeccCC-CcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC---CC
Q 047071 820 LRAGAGLTEPPSLKEWEQAKFIFLMDN-ELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT---RI 895 (902)
Q Consensus 820 ~~~~~~l~~lp~l~~l~~Lr~L~L~~~-~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c---~I 895 (902)
......++.+|.+ ..+|+.|.+.+| ++..+|+.- ..+|++|.|++|.++..||++ |++|+|+++ .|
T Consensus 58 ~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s-------Le~L~L~~n~~~~L 127 (426)
T PRK15386 58 YIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES-------VRSLEIKGSATDSI 127 (426)
T ss_pred EeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc-------cceEEeCCCCCccc
Confidence 3333345555522 224666666654 355555431 236666667666666666665 555555443 35
Q ss_pred ccCCCC
Q 047071 896 NCLPNT 901 (902)
Q Consensus 896 ~~LP~s 901 (902)
..||++
T Consensus 128 ~~LPss 133 (426)
T PRK15386 128 KNVPNG 133 (426)
T ss_pred ccCcch
Confidence 666655
No 159
>PHA00729 NTP-binding motif containing protein
Probab=96.14 E-value=0.011 Score=62.84 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=27.1
Q ss_pred HHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 467 ILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 467 L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+++.+.+.+...|.|+|.+|+||||||..+.+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444555566689999999999999999998764
No 160
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.14 E-value=0.0077 Score=63.36 Aligned_cols=65 Identities=20% Similarity=0.096 Sum_probs=48.1
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
...++||-++.++.+.-+..+++.+-+.|.||+|+||||-+..+++..--...=+.++-++.|+.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 34567999999999988888889999999999999999988887766532222244444444444
No 161
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.12 E-value=0.0078 Score=74.74 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=35.8
Q ss_pred ccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 837 QAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 837 ~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
.|+.|+|++|.+..+|.. -..+|++|+|+ |+.|..||.+ +. .+|++|+|++|+|+.+|.
T Consensus 242 ~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls-~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 242 TIQEMELSINRITELPER-LPSALQSLDLF-HNKISCLPEN-LP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred cccEEECcCCccCcCChh-HhCCCCEEECc-CCccCccccc-cC--CCCcEEECCCCccccCcc
Confidence 566666666666666554 11356666666 5566666665 33 366666776666666664
No 162
>PRK07261 topology modulation protein; Provisional
Probab=96.08 E-value=0.013 Score=59.80 Aligned_cols=34 Identities=35% Similarity=0.451 Sum_probs=24.9
Q ss_pred EEEEecCCCCChhhHHHHHhhcccc-cccccEEEE
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKT-KLIFDVIIL 511 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~v-r~~Fd~i~W 511 (902)
.|.|+|++|+||||||+.+...... .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4889999999999999999765432 123455555
No 163
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.17 Score=54.45 Aligned_cols=175 Identities=19% Similarity=0.228 Sum_probs=99.6
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec-cccCcHHHHHHHHHHhcCcCCCCCCcchhhHH----HH
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV-SRYWSVRKIQNDVLRQLPLYCEDSEADSDVAE----KL 548 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v-s~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~----~L 548 (902)
++-+++.++|.-|.|||.+.+....... . +.++-+.+ .+..+...+...+...+..+. ..+...... .+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHH
Confidence 4667999999999999999995533221 1 11222333 334567777788887776632 113332333 33
Q ss_pred Hhhh-cCce-eEEEEccchhh--hhhhhhcCC--C-CCCCCCcEEEEEcccCCc-------cccc-Cccee-EEecccCH
Q 047071 549 FHFL-NGKK-FLLLLDDVWEQ--INLQEVGIP--D-PSSENVGKIVVASRTVGA-------CLEM-DASKL-IEVETVSK 612 (902)
Q Consensus 549 ~~~L-~~kr-~LLVLDDV~d~--~~~~~L~~~--l-~~~~~GSkIIVTTR~~~v-------a~~~-~~~~~-~~L~~Ls~ 612 (902)
.... +++| ..+++|+..+. +.++.++-. + .....--+|+..-..+-- .... ....+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3332 4677 89999998754 233333211 1 111111223333221110 0111 11233 89999999
Q ss_pred HHHHHHHHHHhcC-cccCC-CCcchHHHHHHHhCCCcchhhhhc
Q 047071 613 KEAWELFYEQVGR-VIELP-HIQPFAQTIVYGCGGLPLLIIVTG 654 (902)
Q Consensus 613 ees~~LF~~~af~-~~~~~-~l~~ia~~Ia~~c~GlPLAL~vlg 654 (902)
++...++..+..+ ..+.+ -..+....|.....|.|.+++.++
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9888888777665 22222 234567789999999999998775
No 164
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.04 E-value=0.0095 Score=73.96 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=62.8
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
....+.+.+..+..+|... ..+|++|+|++|.+..+|.. -..+|+.|+|+ ++++..||.+ +. .+|++|+|++|+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls-~N~L~~LP~~-l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPAT-LPDTIQEMELS-INRITELPER-LP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChh-hhccccEEECc-CCccCcCChh-Hh--CCCCEEECcCCc
Confidence 4455566666777777422 35899999999999998874 22479999999 5568899988 54 589999999999
Q ss_pred CccCCCCC
Q 047071 895 INCLPNTF 902 (902)
Q Consensus 895 I~~LP~sI 902 (902)
|..||.++
T Consensus 274 L~~LP~~l 281 (754)
T PRK15370 274 ISCLPENL 281 (754)
T ss_pred cCcccccc
Confidence 99998753
No 165
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.03 E-value=0.021 Score=59.97 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecc----ccC--cHHH----------HH
Q 047071 461 ERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVS----RYW--SVRK----------IQ 524 (902)
Q Consensus 461 e~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs----~~~--~~~~----------ll 524 (902)
..+-...++.|. ...++.+.|++|.|||.||....-+.-....|+.++++.-. +.. -+-+ -+
T Consensus 6 ~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~ 83 (205)
T PF02562_consen 6 NEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPI 83 (205)
T ss_dssp SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHH
T ss_pred CHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHH
Confidence 344455566665 45699999999999999998887655446788888777421 111 0111 11
Q ss_pred HHHHHhcCcCCCCCCcchhhHHH------HHhhhcCc---eeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccC
Q 047071 525 NDVLRQLPLYCEDSEADSDVAEK------LFHFLNGK---KFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTV 593 (902)
Q Consensus 525 ~~Il~~L~~~~~~~~~~~~l~~~------L~~~L~~k---r~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~ 593 (902)
.+.+..+.. ....+.+... -..+++++ ..+||+|.+.+. .++..+... .+.|||+|++--..
T Consensus 84 ~d~l~~~~~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 84 YDALEELFG----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHHhC----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 122222211 0011111110 01234554 569999999765 567777554 57899999987654
Q ss_pred Cc
Q 047071 594 GA 595 (902)
Q Consensus 594 ~v 595 (902)
++
T Consensus 157 Q~ 158 (205)
T PF02562_consen 157 QI 158 (205)
T ss_dssp --
T ss_pred ee
Confidence 43
No 166
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.02 E-value=0.1 Score=56.91 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHH
Q 047071 462 RTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQ 524 (902)
Q Consensus 462 ~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll 524 (902)
.-++++..++..+ .-|.|.|++|+|||+||+.+++.. ... ..++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l--g~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR--DRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh--CCC---EEEEeCCccCCHHHHh
Confidence 3345555555443 355689999999999999998633 222 2345555554444443
No 167
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.01 E-value=0.083 Score=66.01 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=93.3
Q ss_pred CccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 454 LFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
...+.|.+..++.|.+.+.- ...+-+.++|++|.|||+||+.+++.. ...| +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----
Confidence 34457888887777776531 234568899999999999999999876 3333 22211
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhh--------------hhhhhcCCCCC--CCCC
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQI--------------NLQEVGIPDPS--SENV 583 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~--------------~~~~L~~~l~~--~~~G 583 (902)
.+ ++.... . ..+.....+.. .-...+.+|+||+++... ....+...+.. ...+
T Consensus 521 ~~----l~~~~v-----G-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 PE----ILSKWV-----G-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred HH----Hhhccc-----C-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11 111110 0 11222222332 224567999999986431 01222222221 1223
Q ss_pred cEEEEEcccCCccc-c----cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 584 GKIVVASRTVGACL-E----MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 584 SkIIVTTR~~~va~-~----~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
--||.||....... . -.-...+.++..+.++-.++|+....+....+ ..-...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~--~~~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE--DVDLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc--cCCHHHHHHHcCCCC
Confidence 34555665443321 1 12346788999999999999987665411111 112466777777643
No 168
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.046 Score=64.71 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=107.7
Q ss_pred CCccccchHHHHHHHHHhhcCCCc-eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEA-GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~-~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
....+||-+.-...|...|..+.+ ..-...|+.|+||||+|+-++.-.--.. + ....+++....-+.|-..-
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGS 86 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCC
Confidence 345569999999999999877543 4567789999999999998875442111 1 1111222222222222220
Q ss_pred CcCC-----CCCCcchhhHHHHHhhh-----cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCcc-c
Q 047071 532 PLYC-----EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGAC-L 597 (902)
Q Consensus 532 ~~~~-----~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va-~ 597 (902)
.... ......++ .+.|.+.. .++.=+.|+|.|.-. ..|..++..+-.....-+.|+.|.+ ..+. .
T Consensus 87 ~~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 87 LIDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred cccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0000 01111222 22233322 345568999999743 5577776655443444455555544 4443 3
Q ss_pred ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 598 EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 598 ~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
.....+.|.++.|+.++-...+...+.. ..-.-..+....|++..+|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~-E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDK-EGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHh-cCCccCHHHHHHHHHHcCCChh
Confidence 3345678999999999988888887764 2222234456667777777543
No 169
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.97 E-value=0.0084 Score=62.57 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=53.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCC---CCcchhhHHHHHhh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCED---SEADSDVAEKLFHF 551 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~---~~~~~~l~~~L~~~ 551 (902)
+++|.++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+... ..+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999888887766433 44566676543 345777788888888876421 11233333322333
Q ss_pred hcCc-eeEEEEccc
Q 047071 552 LNGK-KFLLLLDDV 564 (902)
Q Consensus 552 L~~k-r~LLVLDDV 564 (902)
+..+ .=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 3333 348888865
No 170
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.97 E-value=0.04 Score=66.18 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=38.6
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhc
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
...++|.+..++.+...+......-+.|+|++|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999998876655566789999999999999999764
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.12 Score=58.29 Aligned_cols=174 Identities=9% Similarity=-0.019 Sum_probs=95.5
Q ss_pred HHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcC-------
Q 047071 463 TVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLY------- 534 (902)
Q Consensus 463 ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~------- 534 (902)
..+.|.+.+..+. ...+.+.|+.|+||+++|..++...--..... ...++.-..-+.+...-.+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 3456666766654 35788999999999999998875442111110 00111111111111110000
Q ss_pred CCCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccC-Ccccc-cCcceeE
Q 047071 535 CEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTV-GACLE-MDASKLI 605 (902)
Q Consensus 535 ~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~-~va~~-~~~~~~~ 605 (902)
.......++ ++.+.+.+ .+++-++|+|+++... ....++..+-....++.+|++|.+. .+... ......+
T Consensus 83 ~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 83 DNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred cCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 000112222 22333333 3566688899998653 3555544444444566677666653 44322 2345789
Q ss_pred EecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchh
Q 047071 606 EVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 606 ~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
.+.+++.++..+.+...... ....+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA------EISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc------ChHHHHHHHHHcCCCHHHH
Confidence 99999999999888765421 1123566788899999643
No 172
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.95 E-value=0.041 Score=55.57 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=70.0
Q ss_pred chHHHHHHHHHhhcCCCce-EEEEecCCCCChhhHHHHHhhccccccc------------------ccEEEEeecccc--
Q 047071 459 STERTVLKILQCISGVEAG-KIGIHGISGIGKTTVLKALISYPKTKLI------------------FDVIILVTVSRY-- 517 (902)
Q Consensus 459 GRe~ele~L~~~L~~~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~~------------------Fd~i~WV~vs~~-- 517 (902)
|-+...+.|.+.+.++.+. .+.++|+.|+||+++|..+++..--... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777888888776654 6899999999999999888754321111 111222221111
Q ss_pred -CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCC
Q 047071 518 -WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 518 -~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~ 594 (902)
..+.++. .+...+.... ..+++=++||||++.. +....|+..+-....++.+|++|++..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 1121111 2222221111 1245668999999865 335555444444456788888887654
Q ss_pred -cc-cccCcceeEEecccC
Q 047071 595 -AC-LEMDASKLIEVETVS 611 (902)
Q Consensus 595 -va-~~~~~~~~~~L~~Ls 611 (902)
+. ........+.+.+|+
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 32 222334566776653
No 173
>PRK06526 transposase; Provisional
Probab=95.90 E-value=0.0059 Score=66.29 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..-+.|+|++|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4568999999999999999997665
No 174
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.82 E-value=0.019 Score=60.03 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=35.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHH
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQN 525 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~ 525 (902)
-.++.|+|++|+|||+|+.+++... ......++|++... +++.++.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 4789999999999999999987655 23346789998865 55555443
No 175
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.82 E-value=0.024 Score=60.01 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=34.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKI 523 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~l 523 (902)
.-.++.|+|.+|+|||+||.+++.... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH
Confidence 346999999999999999999876552 334567888876 5554443
No 176
>PRK09183 transposase/IS protein; Provisional
Probab=95.82 E-value=0.01 Score=64.70 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=20.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+.|+|++|+|||+||..+++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 467799999999999999997654
No 177
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.81 E-value=0.029 Score=63.78 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=63.3
Q ss_pred HHHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccE-EEEeeccc-cCcHHHHHHHHHHhcCcCCCCCCcc
Q 047071 465 LKILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDV-IILVTVSR-YWSVRKIQNDVLRQLPLYCEDSEAD 541 (902)
Q Consensus 465 e~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~-i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~~~~ 541 (902)
.++++.+.. ..-.-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+ ..++.++++.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 447777754 3334668999999999999999887653 122233 35655554 4478889888888766543221111
Q ss_pred h--h---hHHHHHhhh--cCceeEEEEccchhh
Q 047071 542 S--D---VAEKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 542 ~--~---l~~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
. . ....+-+++ .+++++||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 1 111122222 589999999998643
No 178
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.15 Score=57.34 Aligned_cols=172 Identities=7% Similarity=-0.085 Sum_probs=95.0
Q ss_pred HHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----C
Q 047071 463 TVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----E 536 (902)
Q Consensus 463 ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~ 536 (902)
..+++.+.+..+. ...+.+.|+.|+||+++|..++...--...-+. .++.-..-+.+.. -..++ +
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~--------~Cg~C~sC~~~~~-g~HPD~~~i~p 81 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE--------ACGFCHSCELMQS-GNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCHHHHHHHc-CCCCCEEEEec
Confidence 3456666665554 457899999999999999888654321110000 0000011111111 00110 0
Q ss_pred ----CCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEccc-CCccc-ccCcce
Q 047071 537 ----DSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRT-VGACL-EMDASK 603 (902)
Q Consensus 537 ----~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~-~~va~-~~~~~~ 603 (902)
.....++. +.+.+.+ .+.+-++|+|+++... ....++..+-....++.+|++|.+ ..+.. ......
T Consensus 82 ~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 82 EKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred CcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 00122222 2333333 2445688999998653 355555445444456666666555 34432 233457
Q ss_pred eEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhh
Q 047071 604 LIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 604 ~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
.+.+.+++.++..+.+..... . .+..++..++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQGI---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcCC---c------hHHHHHHHcCCCHHHHHHH
Confidence 889999999999988865311 1 2457889999999876544
No 179
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.049 Score=60.45 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=76.8
Q ss_pred ccchHHHHHHHHHhhcC-CCce-EEEEecCCCCChhhHHHHHhhcccccc-------------------cccEEEEeecc
Q 047071 457 SRSTERTVLKILQCISG-VEAG-KIGIHGISGIGKTTVLKALISYPKTKL-------------------IFDVIILVTVS 515 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~-~~~~-VI~IvG~GGVGKTTLA~~vy~d~~vr~-------------------~Fd~i~WV~vs 515 (902)
++|-+....++..+..+ +... .+.+.|+.|+||||+|..+++..--.. .++.+..++-+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 46667777778777763 3344 499999999999999999887653111 11223333333
Q ss_pred ccCc---HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh--hhhhcCCCCCCCCCcEEEEEc
Q 047071 516 RYWS---VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN--LQEVGIPDPSSENVGKIVVAS 590 (902)
Q Consensus 516 ~~~~---~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~--~~~L~~~l~~~~~GSkIIVTT 590 (902)
.... ..+..+.+.+...... ..++.-+++||+++.... -..+...+......+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 3222 2222333332221111 035678999999987532 344443344445567777777
Q ss_pred cc-CCcccc-cCcceeEEeccc
Q 047071 591 RT-VGACLE-MDASKLIEVETV 610 (902)
Q Consensus 591 R~-~~va~~-~~~~~~~~L~~L 610 (902)
.+ ..+... -.....+++.+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred CChhhccchhhhcceeeecCCc
Confidence 63 333321 123456666663
No 180
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.75 E-value=0.046 Score=57.71 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=52.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccc------cEEEEeeccccCcHHHHHHHHHHhcCcCC---------CCCC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIF------DVIILVTVSRYWSVRKIQNDVLRQLPLYC---------EDSE 539 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F------d~i~WV~vs~~~~~~~ll~~Il~~L~~~~---------~~~~ 539 (902)
.-.++.|+|++|+|||+||.+++.... ... ..++|++....++...+. .+........ ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 346999999999999999999875542 222 567888887766655443 3333221110 1112
Q ss_pred cchhhHHHHHhhhc----CceeEEEEccch
Q 047071 540 ADSDVAEKLFHFLN----GKKFLLLLDDVW 565 (902)
Q Consensus 540 ~~~~l~~~L~~~L~----~kr~LLVLDDV~ 565 (902)
+.+++...+.+... .+.-|+|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 34444444444332 344588888874
No 181
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.72 E-value=0.02 Score=60.77 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=36.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccccccc----ccEEEEeeccccCcHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLI----FDVIILVTVSRYWSVRKIQ 524 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~----Fd~i~WV~vs~~~~~~~ll 524 (902)
.-.++.|+|.+|+|||+||.+++........ ...++|++....++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 3468999999999999999999744321221 3578899887776654443
No 182
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.68 E-value=0.069 Score=59.27 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=97.1
Q ss_pred cccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcc-cccccccEEEEeeccccCcH-HHHHHHHHH
Q 047071 456 VSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYP-KTKLIFDVIILVTVSRYWSV-RKIQNDVLR 529 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~-~vr~~Fd~i~WV~vs~~~~~-~~ll~~Il~ 529 (902)
+.+|-.++..++-.+|.. ++..-+.|+|+.|.|||+|......+. +..++| +-|.+...... .-.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHH
Confidence 468999998888888854 455677899999999999988877662 223333 33333333222 224455555
Q ss_pred hcCc----CCCCCCcchhhHHHHHhhhc------CceeEEEEccchhh----hh---hhhhcCCCCCCCCCcEEEEEccc
Q 047071 530 QLPL----YCEDSEADSDVAEKLFHFLN------GKKFLLLLDDVWEQ----IN---LQEVGIPDPSSENVGKIVVASRT 592 (902)
Q Consensus 530 ~L~~----~~~~~~~~~~l~~~L~~~L~------~kr~LLVLDDV~d~----~~---~~~L~~~l~~~~~GSkIIVTTR~ 592 (902)
++.. ......+..+....+...|+ +-++.+|+|.++-- .+ +.-+...-....|-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 5432 22222334444444544443 34688888877521 11 11111111224566778899996
Q ss_pred CCc-------ccccCcceeEEecccCHHHHHHHHHHHh
Q 047071 593 VGA-------CLEMDASKLIEVETVSKKEAWELFYEQV 623 (902)
Q Consensus 593 ~~v-------a~~~~~~~~~~L~~Ls~ees~~LF~~~a 623 (902)
.-. -..+.-..++-++.++-++...+++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 543 2233334466777888899999888876
No 183
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.65 E-value=0.0072 Score=57.12 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997754
No 184
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.63 E-value=0.045 Score=59.22 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=121.0
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccc----ccccccEEEEeecccc--------------
Q 047071 456 VSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPK----TKLIFDVIILVTVSRY-------------- 517 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~----vr~~Fd~i~WV~vs~~-------------- 517 (902)
.+.++++....+.++...++.+-+.++|++|.||-|.+..+.+..- .+-.-+..-|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 3577888888888887777788999999999999997766554321 1223334445443222
Q ss_pred -------CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCcee-EEEEccchhh--hhhhhhcCCCCCCCCCcEEE
Q 047071 518 -------WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKF-LLLLDDVWEQ--INLQEVGIPDPSSENVGKIV 587 (902)
Q Consensus 518 -------~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~-LLVLDDV~d~--~~~~~L~~~l~~~~~GSkII 587 (902)
..-.-+..++++++.....- +.-..+.| ++|+-.+++. +.-..++.....-.+.+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 01122333333333221100 00112344 5556555543 22223322222234456776
Q ss_pred EEccc-CCc-ccccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhccccccc-----
Q 047071 588 VASRT-VGA-CLEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEE----- 660 (902)
Q Consensus 588 VTTR~-~~v-a~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~----- 660 (902)
+...+ ..+ ...-...-.+++...+++|-...++..+-. ....-..+++.+|+++++|+---+-.+-..++-+
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~k-E~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK-EGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH-hcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 64432 112 221123456789999999999999887765 2222226789999999999754332222222211
Q ss_pred -----chhhhhhHhhHhhhhhcc-ccchHHHHHHhhhccc
Q 047071 661 -----NNVLVWEHTSKLFSKSIA-NATIEEVIQLLKFSFD 694 (902)
Q Consensus 661 -----~~~~~W~~~l~~l~~~~~-~~~~~~v~~iL~lSYd 694 (902)
-...+|+-.........- +.....+..+-..-|+
T Consensus 241 a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYe 280 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYE 280 (351)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 234578877766655432 2334444444333343
No 185
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.60 E-value=0.0036 Score=64.34 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=41.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGK 555 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~k 555 (902)
..-+.|+|..|+|||.||..+.+... ...+ .+.|++ ..+++..+-.. .... .... +.+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~------~~~L~~~l~~~----~~~~-~~~~----~~~~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFIT------ASDLLDELKQS----RSDG-SYEE----LLKRLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEE------HHHHHHHHHCC----HCCT-THCH----HHHHHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEee------cCceecccccc----cccc-chhh----hcCccc-c
Confidence 45689999999999999999987653 2233 345563 34444444321 1111 2222 223333 3
Q ss_pred eeEEEEccchh
Q 047071 556 KFLLLLDDVWE 566 (902)
Q Consensus 556 r~LLVLDDV~d 566 (902)
-=||||||+..
T Consensus 109 ~dlLilDDlG~ 119 (178)
T PF01695_consen 109 VDLLILDDLGY 119 (178)
T ss_dssp SSCEEEETCTS
T ss_pred ccEecccccce
Confidence 45888999853
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.031 Score=60.71 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=52.3
Q ss_pred chHHHHHHHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCC
Q 047071 459 STERTVLKILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCED 537 (902)
Q Consensus 459 GRe~ele~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~ 537 (902)
++...+..+.++... +...-+.++|.+|+|||.||.++.+... +..+ .+.|++ ..++..++......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~---- 154 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE---- 154 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc----
Confidence 344444444443321 2556788999999999999999999885 3333 345553 44455555444332
Q ss_pred CCcchhhHHHHHhhhcCceeEEEEccchh
Q 047071 538 SEADSDVAEKLFHFLNGKKFLLLLDDVWE 566 (902)
Q Consensus 538 ~~~~~~l~~~L~~~L~~kr~LLVLDDV~d 566 (902)
......+.+.++ +-=||||||+..
T Consensus 155 ----~~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 155 ----GRLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred ----CchHHHHHHHhh-cCCEEEEecccC
Confidence 111222222222 234899999853
No 187
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.54 E-value=0.038 Score=60.96 Aligned_cols=88 Identities=23% Similarity=0.259 Sum_probs=49.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
..+++.|+|+.|+||||++..++.....+..-..+..++.... ....+.+....+.++.+.....+..++...+. .+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 4579999999999999999998876632211124555654432 12334444445555544433333344443333 333
Q ss_pred CceeEEEEccc
Q 047071 554 GKKFLLLLDDV 564 (902)
Q Consensus 554 ~kr~LLVLDDV 564 (902)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 188
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.53 E-value=0.21 Score=60.22 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=100.8
Q ss_pred ccccchHHHHHHHHHhhcC-----CCceEEEEecCCCCChhhHHHHHhhccc------ccccccEEEEeeccccCcHHHH
Q 047071 455 FVSRSTERTVLKILQCISG-----VEAGKIGIHGISGIGKTTVLKALISYPK------TKLIFDVIILVTVSRYWSVRKI 523 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~-----~~~~VI~IvG~GGVGKTTLA~~vy~d~~------vr~~Fd~i~WV~vs~~~~~~~l 523 (902)
..+=+|+.+..+|.+++.. ...+.+-|.|.+|.|||..+..|.+... --..|+. +.|+..+-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHH
Confidence 3456899999999998843 2345899999999999999999987432 1234433 55666667789999
Q ss_pred HHHHHHhcCcCCCCCCcchhhHHHHHhhhc-----CceeEEEEccchhhhh--hhhhcCCCCC-CCCCcEEEEEcccCC-
Q 047071 524 QNDVLRQLPLYCEDSEADSDVAEKLFHFLN-----GKKFLLLLDDVWEQIN--LQEVGIPDPS-SENVGKIVVASRTVG- 594 (902)
Q Consensus 524 l~~Il~~L~~~~~~~~~~~~l~~~L~~~L~-----~kr~LLVLDDV~d~~~--~~~L~~~l~~-~~~GSkIIVTTR~~~- 594 (902)
+..|..++..... ........|..+.. .+.++|++|+++..-. -+-+...|.| ..++||++|.+=...
T Consensus 475 Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 9999999987652 22333334444432 4678999999865421 1111222322 446777766542111
Q ss_pred ----------cccccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 595 ----------ACLEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 595 ----------va~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
++..+| ...+...|-++++-.++...+..+
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcc
Confidence 111111 234555566666655555554433
No 189
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.51 E-value=0.036 Score=69.11 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHhhcC-------C--CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG-------V--EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~-------~--~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.|.+.+.. . ...++.++|+.|+|||+||+.++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 358999988888887742 1 23468899999999999999998765
No 190
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.3 Score=55.41 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=58.4
Q ss_pred CceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEccc-CCcccc-cCcceeEEecccCHHHHHHHHHHHhcCcccC
Q 047071 554 GKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRT-VGACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIEL 629 (902)
Q Consensus 554 ~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~ 629 (902)
+++-++|+|+++.. .....++..+-...+++.+|++|.+ ..+... ......+.+.+++.++..+.+.... . .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~--~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V--A- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C--C-
Confidence 45568889999865 3456665555545556666655554 444422 2345789999999999998887641 1 1
Q ss_pred CCCcchHHHHHHHhCCCcchhhhh
Q 047071 630 PHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 630 ~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
+ ...++..++|.|+.+..+
T Consensus 207 ----~-~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ----D-ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----h-HHHHHHHcCCCHHHHHHH
Confidence 1 234678889999755443
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.42 E-value=0.0093 Score=58.02 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=42.2
Q ss_pred EEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeE
Q 047071 479 IGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFL 558 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~L 558 (902)
|.|+|++|+|||+||+.+++.. .. ...-+.++...+..+++...--. ..........+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~---~~~~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPS---NGQFEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET----TTTTCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeec---ccccccccccccccc-----cceeE
Confidence 5789999999999999998766 22 22335666666666554322111 000000011111111 17899
Q ss_pred EEEccchh
Q 047071 559 LLLDDVWE 566 (902)
Q Consensus 559 LVLDDV~d 566 (902)
+|||++..
T Consensus 69 l~lDEin~ 76 (139)
T PF07728_consen 69 LVLDEINR 76 (139)
T ss_dssp EEESSCGG
T ss_pred EEECCccc
Confidence 99999974
No 192
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.14 Score=62.69 Aligned_cols=175 Identities=11% Similarity=0.100 Sum_probs=99.4
Q ss_pred CCccccchHH---HHHHHHHhhcCC---------CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 453 GLFVSRSTER---TVLKILQCISGV---------EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 453 ~~~~~VGRe~---ele~L~~~L~~~---------~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
...+..|-++ |+++++++|.++ -++=+.++|++|.|||-||++++.... -. |++++..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VP-----F~svSGS--- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VP-----FFSVSGS--- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--Cc-----eeeechH---
Confidence 3445567665 455556667652 256688999999999999999987763 22 3333332
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhh-----------------hhhhhhcCCCCCCCC
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQ-----------------INLQEVGIPDPSSEN 582 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~-----------------~~~~~L~~~l~~~~~ 582 (902)
+ +++-+.. -....++.+...- .+.++.+.+|.++.. ..+..+...+..+..
T Consensus 379 -E----FvE~~~g------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 -E----FVEMFVG------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred -H----HHHHhcc------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 1 1111111 0122222333322 346788888877532 124444433333333
Q ss_pred Cc-EEE-EEcccCCcccc----c-CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 583 VG-KIV-VASRTVGACLE----M-DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 583 GS-kII-VTTR~~~va~~----~-~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
++ .|+ -+|....+.+. . .-+..+.++.-+.....++|..++.......+..++++ |+...-|.+=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 33 333 35554544321 1 23567888888899999999998877333344555666 88888877743
No 193
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.075 Score=60.93 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=50.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
..++|+|+|++|+||||++..++.... ...+ .+.+++.... ....+-+....+.++.+.....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999986553 2222 3444544322 223334445555555444322344555544433222
Q ss_pred C-ceeEEEEccch
Q 047071 554 G-KKFLLLLDDVW 565 (902)
Q Consensus 554 ~-kr~LLVLDDV~ 565 (902)
. +.=+|++|-..
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1 23577888764
No 194
>PLN03150 hypothetical protein; Provisional
Probab=95.37 E-value=0.015 Score=71.07 Aligned_cols=64 Identities=28% Similarity=0.301 Sum_probs=53.8
Q ss_pred ccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc-cCCCC
Q 047071 837 QAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN-CLPNT 901 (902)
Q Consensus 837 ~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~-~LP~s 901 (902)
.+..|+|+++.+. .+|.. ++|.+|++|+|++|.--..+|.+ +++|.+|++|||++|+|. .+|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchH
Confidence 4788999999886 47766 99999999999965544589998 999999999999999887 66754
No 195
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.35 E-value=0.054 Score=59.33 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=55.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccc-cEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcch-----
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIF-DVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADS----- 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F-d~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~----- 542 (902)
-..++|+|.+|+|||||++.+++.. +.+| +.++++-+++.. .+.++.+.+...-.... .......
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i--~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNI--AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHH--HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999887 3345 445556666554 46677777665321111 1111111
Q ss_pred -hhHHHHHhhh--c-CceeEEEEccchhh
Q 047071 543 -DVAEKLFHFL--N-GKKFLLLLDDVWEQ 567 (902)
Q Consensus 543 -~l~~~L~~~L--~-~kr~LLVLDDV~d~ 567 (902)
...-.+-+++ + ++.+||++||+..-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1111233444 3 88999999998543
No 196
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.35 E-value=0.041 Score=69.73 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHhhcC------C---CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG------V---EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~------~---~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 469999999999888843 1 24578899999999999999998754
No 197
>PRK04132 replication factor C small subunit; Provisional
Probab=95.34 E-value=0.11 Score=65.23 Aligned_cols=150 Identities=9% Similarity=-0.040 Sum_probs=89.4
Q ss_pred CCCCChhhHHHHHhhcccccccc-cEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEc
Q 047071 484 ISGIGKTTVLKALISYPKTKLIF-DVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLD 562 (902)
Q Consensus 484 ~GGVGKTTLA~~vy~d~~vr~~F-d~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLD 562 (902)
|.++||||+|..++++.-. ..+ ...+-++.++..+... .++++..+....+. -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 7789999999999887522 122 2356666666544443 33333322111000 01245799999
Q ss_pred cchhhh--hhhhhcCCCCCCCCCcEEEEEccc-CCcccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHH
Q 047071 563 DVWEQI--NLQEVGIPDPSSENVGKIVVASRT-VGACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQT 638 (902)
Q Consensus 563 DV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~ 638 (902)
+++... ....|+..+-.....+++|++|.+ ..+... ......+++.+++.++-...+...+... .-.-..+....
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E-gi~i~~e~L~~ 716 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-GLELTEEGLQA 716 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc-CCCCCHHHHHH
Confidence 998653 455554444433445566665554 333322 2345789999999999888887665431 11122457889
Q ss_pred HHHHhCCCcchh
Q 047071 639 IVYGCGGLPLLI 650 (902)
Q Consensus 639 Ia~~c~GlPLAL 650 (902)
|++.|+|.+..+
T Consensus 717 Ia~~s~GDlR~A 728 (846)
T PRK04132 717 ILYIAEGDMRRA 728 (846)
T ss_pred HHHHcCCCHHHH
Confidence 999999988543
No 198
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.31 E-value=0.033 Score=62.47 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=54.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-+++-|+|++|+||||||.+++... ...-..++|++....+++. .++.++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 34689999999999999999987554 2334567899877766653 334443321 22224455555555
Q ss_pred hhhc-CceeEEEEccch
Q 047071 550 HFLN-GKKFLLLLDDVW 565 (902)
Q Consensus 550 ~~L~-~kr~LLVLDDV~ 565 (902)
..++ +..-|||+|.|.
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 5443 456689999875
No 199
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.30 E-value=0.05 Score=68.89 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHhhcC-------C--CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG-------V--EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~-------~--~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.|...+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999998888887742 1 22578899999999999999998654
No 200
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.12 Score=61.70 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHH
Q 047071 458 RSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQ 524 (902)
Q Consensus 458 VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll 524 (902)
=|.++.+.+|.+.+.- ..++-|..+|++|.|||++|+.+++.- .-.| +.+..+ ++
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~--~~nF-----lsvkgp----EL- 504 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA--GMNF-----LSVKGP----EL- 504 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh--cCCe-----eeccCH----HH-
Confidence 3466666666655421 367889999999999999999998876 4555 222211 11
Q ss_pred HHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhh-------------hhhhhcCCCCCCCCCcEEEE--
Q 047071 525 NDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQI-------------NLQEVGIPDPSSENVGKIVV-- 588 (902)
Q Consensus 525 ~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~-------------~~~~L~~~l~~~~~GSkIIV-- 588 (902)
+..... ..+..+..+.+.- .-.+++|.||.++... .+..++..+........|+|
T Consensus 505 ---~sk~vG------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 505 ---FSKYVG------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred ---HHHhcC------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 111100 1222222222222 3356888888876431 12233333332222323433
Q ss_pred -EcccCCcccc-c---CcceeEEecccCHHHHHHHHHHHhcC
Q 047071 589 -ASRTVGACLE-M---DASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 589 -TTR~~~va~~-~---~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
|-|...+-.. + .....+.++.-+.+.-.++|+.++-.
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3343333111 1 24677888888888999999998876
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.18 Score=57.10 Aligned_cols=174 Identities=10% Similarity=-0.015 Sum_probs=95.2
Q ss_pred HHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----C
Q 047071 463 TVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----E 536 (902)
Q Consensus 463 ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~ 536 (902)
.-+++.+.+.++. ...+.+.|+.|+||+++|..++...--...-+. ..++.-..-+.+. ....++ +
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~-~g~HPD~~~i~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQ-AGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHH-cCCCCCEEEEec
Confidence 3456777776654 467889999999999999887654421110000 0000001111111 011111 0
Q ss_pred ----CCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEccc-CCcccc-cCcce
Q 047071 537 ----DSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRT-VGACLE-MDASK 603 (902)
Q Consensus 537 ----~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~-~~va~~-~~~~~ 603 (902)
.....++ ++.+.+.+ .+++-++|+|+++.+. ....++..+-....++.+|++|.+ ..+... .....
T Consensus 82 ~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 EKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred ccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0012222 22233333 3566789999998653 344554444444456666666655 444422 23356
Q ss_pred eEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 604 LIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 604 ~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
.+.+.+++.++....+....+ ...+.+..++..++|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVT------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHccC------CCHHHHHHHHHHcCCCHHHHH
Confidence 789999999999888765321 112346788999999996443
No 202
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.28 E-value=0.055 Score=56.95 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=31.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.-.++.|.|.+|+||||||.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH
Confidence 357899999999999999999876552 2234567786554443
No 203
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.023 Score=57.74 Aligned_cols=36 Identities=39% Similarity=0.499 Sum_probs=28.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
...+|.|.|+.|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l--~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL--KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEE
Confidence 45689999999999999999998776 3445555555
No 204
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.25 E-value=0.035 Score=70.17 Aligned_cols=45 Identities=24% Similarity=0.222 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHhhcC---------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG---------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.+.+.+.. ....++.++|+.|+|||.||+.++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999887731 134578999999999999999887654
No 205
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.17 E-value=0.0048 Score=66.88 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=50.3
Q ss_pred ccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeCh--hhhcCCCCccEEEeeCCCCccCCC
Q 047071 835 WEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPM--SFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~--sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
+-+++.|.|.+|.++.|....+|.+|.+|+++ .++|.++.. + ||+|++|++|.|.++.|..+|+
T Consensus 351 LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~-~N~Ie~ldeV~~-IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS-SNQIEELDEVNH-IGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hcCEeeeehhhhhHhhhhhhHhhhhheecccc-ccchhhHHHhcc-cccccHHHHHhhcCCCccccch
Confidence 44667777777777777777888999999998 555666653 5 8999999999999998888775
No 206
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.12 E-value=0.003 Score=70.85 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=68.7
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
...+.++..+++.+| .|..+++||+|||+.|+|+.+-+. ..|.+|-.|.|-++.+|+.||...|++|..|+-|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 344556677888888 689999999999999999987665 7888888888887789999999888888888888887
Q ss_pred CCCCccCC
Q 047071 892 KTRINCLP 899 (902)
Q Consensus 892 ~c~I~~LP 899 (902)
-|.|.-++
T Consensus 149 an~i~Cir 156 (498)
T KOG4237|consen 149 ANHINCIR 156 (498)
T ss_pred hhhhcchh
Confidence 77665544
No 207
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.12 E-value=0.037 Score=61.77 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcC
Q 047071 459 STERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLY 534 (902)
Q Consensus 459 GRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~ 534 (902)
+|........+++.+ ...+-+.|+|..|+|||.||..+++... +..+. +.|+.+ .+++..+-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 555555556666643 1345788999999999999999998874 23333 445543 24444444333211
Q ss_pred CCCCCcchhhHHHHHhhhcCceeEEEEccchh--hhhhhh--hcCCC-CCC-CCCcEEEEEcc
Q 047071 535 CEDSEADSDVAEKLFHFLNGKKFLLLLDDVWE--QINLQE--VGIPD-PSS-ENVGKIVVASR 591 (902)
Q Consensus 535 ~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d--~~~~~~--L~~~l-~~~-~~GSkIIVTTR 591 (902)
+.... .+.+. +-=||||||+.. ...|.. +...+ ... ..+-.+|+||.
T Consensus 207 -----~~~~~----l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 -----SVKEK----IDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -----cHHHH----HHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 11222 22222 456899999953 344543 32222 111 23456888886
No 208
>PRK06921 hypothetical protein; Provisional
Probab=95.10 E-value=0.03 Score=61.22 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=28.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV 514 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v 514 (902)
...-+.++|..|+|||.||..+++... +.....++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH
Confidence 356789999999999999999998763 221344566653
No 209
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.10 E-value=0.042 Score=61.63 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=54.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999887655 2333556788776665543 344443321 22234455555555
Q ss_pred hhhc-CceeEEEEccchh
Q 047071 550 HFLN-GKKFLLLLDDVWE 566 (902)
Q Consensus 550 ~~L~-~kr~LLVLDDV~d 566 (902)
..++ +..-+||+|.|..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 4443 4566999998853
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.10 E-value=0.021 Score=64.58 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHhhcC------CCceEEEEecCCCCChhhHHHHHhhcccc
Q 047071 456 VSRSTERTVLKILQCISG------VEAGKIGIHGISGIGKTTVLKALISYPKT 502 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~------~~~~VI~IvG~GGVGKTTLA~~vy~d~~v 502 (902)
..+|.++.++++++++.. ...+++.++|++|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 579999999999999854 24578999999999999999999887743
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.05 E-value=0.079 Score=57.26 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCc
Q 047071 463 TVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEA 540 (902)
Q Consensus 463 ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~ 540 (902)
.+..+.++..+ .+...+.++|.+|+|||+||..+++... ..-..+++++ ..+++..+-..... ...+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~---~~~~ 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN---SETS 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh---cccc
Confidence 34444444432 2235788999999999999999998763 2233455663 34444444333211 0111
Q ss_pred chhhHHHHHhhhcCceeEEEEccchh
Q 047071 541 DSDVAEKLFHFLNGKKFLLLLDDVWE 566 (902)
Q Consensus 541 ~~~l~~~L~~~L~~kr~LLVLDDV~d 566 (902)
. ..+.+.+. +.-||||||+..
T Consensus 153 ~----~~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 153 E----EQLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred H----HHHHHHhc-cCCEEEEeCCCC
Confidence 1 12333344 345889999954
No 212
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.04 E-value=0.063 Score=58.44 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=39.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhccccc----ccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTK----LIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr----~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
-.+.=|+|.+|+|||.|+.+++-..... ..=..++|++-...|++.++. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 4589999999999999998886443221 122468999988888877765 456554
No 213
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.03 E-value=0.003 Score=77.17 Aligned_cols=76 Identities=29% Similarity=0.373 Sum_probs=45.7
Q ss_pred eeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 818 FLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 818 ~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
.+.+....+..+| .+.+|+.|..|+|+||.+..||+. ..|..|++|... ...|..+| + +.+|+.|+++|||.++
T Consensus 387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah-sN~l~~fP-e-~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH-SNQLLSFP-E-LAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc-CCceeech-h-hhhcCcceEEecccch
Confidence 3333334445555 345566666666666666666655 566666666665 44566666 3 6777777777777765
Q ss_pred Cc
Q 047071 895 IN 896 (902)
Q Consensus 895 I~ 896 (902)
|+
T Consensus 464 L~ 465 (1081)
T KOG0618|consen 464 LS 465 (1081)
T ss_pred hh
Confidence 54
No 214
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.01 E-value=0.16 Score=59.22 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=49.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCCCC---CCcchhhHHHHHh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYCED---SEADSDVAEKLFH 550 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~~~---~~~~~~l~~~L~~ 550 (902)
.+.++.++|++|+||||+|..++.....+..+ .++.+++... ....+.+......++.+... ..+.........+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 36799999999999999988887664211222 3344443321 22344455556665544311 1233344333333
Q ss_pred hhcCcee-EEEEccch
Q 047071 551 FLNGKKF-LLLLDDVW 565 (902)
Q Consensus 551 ~L~~kr~-LLVLDDV~ 565 (902)
.+..+.+ ++|+|-..
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3434444 88888764
No 215
>PRK06696 uridine kinase; Validated
Probab=94.99 E-value=0.027 Score=59.83 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhhc---CCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 460 TERTVLKILQCIS---GVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 460 Re~ele~L~~~L~---~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|...+++|.+.+. .+...+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5566677777664 3567899999999999999999998765
No 216
>PRK09354 recA recombinase A; Provisional
Probab=94.97 E-value=0.048 Score=61.67 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=55.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-+++-|+|++|+||||||.+++... ...-..++|++....+++. .+++++... ....+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999987655 2334567899887776653 344443321 22234555555555
Q ss_pred hhhc-CceeEEEEccchh
Q 047071 550 HFLN-GKKFLLLLDDVWE 566 (902)
Q Consensus 550 ~~L~-~kr~LLVLDDV~d 566 (902)
..++ +..-|||+|.|..
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 5443 4566999999853
No 217
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.96 E-value=0.23 Score=61.06 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=77.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
+-|.|+|++|.|||++|+.+++.. ...| +.++.+ ++..... ..........+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~------~~~~~~~---------g~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGS------DFVEMFV---------GVGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehH------HhHHhhh---------cccHHHHHHHHHHHHhcCC
Confidence 448899999999999999998766 2333 122211 1111000 0011222222333334567
Q ss_pred eEEEEccchhhh----------------hhhhhcCCCCCC--CCCcEEEEEcccCCcccc-----cCcceeEEecccCHH
Q 047071 557 FLLLLDDVWEQI----------------NLQEVGIPDPSS--ENVGKIVVASRTVGACLE-----MDASKLIEVETVSKK 613 (902)
Q Consensus 557 ~LLVLDDV~d~~----------------~~~~L~~~l~~~--~~GSkIIVTTR~~~va~~-----~~~~~~~~L~~Ls~e 613 (902)
++|+||+++... ....++..+... ..+.-+|.||........ -.-...+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999987531 112222222211 223444556665443221 112467788888988
Q ss_pred HHHHHHHHHhcCcccCCCCcchHHHHHHHhCC
Q 047071 614 EAWELFYEQVGRVIELPHIQPFAQTIVYGCGG 645 (902)
Q Consensus 614 es~~LF~~~af~~~~~~~l~~ia~~Ia~~c~G 645 (902)
+-.+++..+.......+.. ....+++.+.|
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 8888888877552111111 23446666655
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.94 E-value=0.051 Score=60.90 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHh--hcccccccccEEEE----eeccccCc-----HHH----
Q 047071 458 RSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALI--SYPKTKLIFDVIIL----VTVSRYWS-----VRK---- 522 (902)
Q Consensus 458 VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy--~d~~vr~~Fd~i~W----V~vs~~~~-----~~~---- 522 (902)
-+|..+..--+++|+++++..|.+.|.+|.|||.||.+.. +-. .+..|..++- +.++++.. .++
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~-e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVL-ERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHH-HHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 5677787788899999999999999999999999886643 222 2445544332 12332211 111
Q ss_pred ---HHHHHHHhcCcCCCCCCcchhhHHHH----------HhhhcCc---eeEEEEccchhh--hhhhhhcCCCCCCCCCc
Q 047071 523 ---IQNDVLRQLPLYCEDSEADSDVAEKL----------FHFLNGK---KFLLLLDDVWEQ--INLQEVGIPDPSSENVG 584 (902)
Q Consensus 523 ---ll~~Il~~L~~~~~~~~~~~~l~~~L----------~~~L~~k---r~LLVLDDV~d~--~~~~~L~~~l~~~~~GS 584 (902)
-.-+-++.+...... . +.....+ ..+++++ +-++|+|.+.+. .+...+ +...+.||
T Consensus 306 Wmq~i~DnLE~L~~~~~~--~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~Gs 379 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEP--G-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGEGS 379 (436)
T ss_pred hHHHHHhHHHHHhccccc--c-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccCCC
Confidence 111112222221111 1 1122222 1233454 568999999765 345555 34478999
Q ss_pred EEEEEcccC
Q 047071 585 KIVVASRTV 593 (902)
Q Consensus 585 kIIVTTR~~ 593 (902)
||+.|---.
T Consensus 380 KIVl~gd~a 388 (436)
T COG1875 380 KIVLTGDPA 388 (436)
T ss_pred EEEEcCCHH
Confidence 999887543
No 219
>PRK08233 hypothetical protein; Provisional
Probab=94.90 E-value=0.072 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|+|.|++|+||||||+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 220
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.90 E-value=0.028 Score=69.90 Aligned_cols=74 Identities=28% Similarity=0.301 Sum_probs=58.8
Q ss_pred eeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 818 FLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 818 ~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
.+...+..+..+|.. ..+|+.|++++|.+..+|.. +.+|++|+|+ .+.++.||.+ +++|.+|++|+|++|.|..
T Consensus 386 ~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls-~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 386 ELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML--PSGLLSLSVY-RNQLTRLPES-LIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred eEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc--hhhhhhhhhc-cCcccccChH-HhhccCCCeEECCCCCCCc
Confidence 344445556666643 35789999999999999864 3578899999 6679999999 9999999999999998763
No 221
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.063 Score=66.08 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=61.6
Q ss_pred cccchHHHHHHHHHhhcC---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHH
Q 047071 456 VSRSTERTVLKILQCISG---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQND 526 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~ 526 (902)
.++|-+..+..+.+.+.. .+..+....||.|||||.||+.++...- ..=+..+-++.|..-.-. .
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkH----s 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKH----S 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHHH----H
Confidence 358999999999888732 2456788899999999999999876551 100334444444332211 2
Q ss_pred HHHhcCcCCCCCCcchhhHHHHHhhhcCcee-EEEEccchh
Q 047071 527 VLRQLPLYCEDSEADSDVAEKLFHFLNGKKF-LLLLDDVWE 566 (902)
Q Consensus 527 Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~-LLVLDDV~d 566 (902)
+.+-++.+. +-...++ -..|-+.++.++| +|.||.+..
T Consensus 566 VSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 566 VSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhh
Confidence 222233332 1101111 2345566677877 888999974
No 222
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.4 Score=57.08 Aligned_cols=151 Identities=14% Similarity=0.059 Sum_probs=81.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
..+.+.++|++|.|||.||+.+++.. +.+|-.+-.-. ++.... ..........+...-+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~--~~~fi~v~~~~-------------l~sk~v-----Gesek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES--RSRFISVKGSE-------------LLSKWV-----GESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC--CCeEEEeeCHH-------------Hhcccc-----chHHHHHHHHHHHHHcC
Confidence 45689999999999999999999865 44553322111 111110 00222222333333457
Q ss_pred ceeEEEEccchhhhh-------------hhhhcCCCCCCC--CCcEEEEEcccCCcccc-----cCcceeEEecccCHHH
Q 047071 555 KKFLLLLDDVWEQIN-------------LQEVGIPDPSSE--NVGKIVVASRTVGACLE-----MDASKLIEVETVSKKE 614 (902)
Q Consensus 555 kr~LLVLDDV~d~~~-------------~~~L~~~l~~~~--~GSkIIVTTR~~~va~~-----~~~~~~~~L~~Ls~ee 614 (902)
.++.|.+|.++.... ...++..+.... .+-.||-+|-....... ..-...+.+.+.+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 889999999874321 122222222122 22233444443333221 1224678899999999
Q ss_pred HHHHHHHHhcCcccCCCCcchHHHHHHHhCC
Q 047071 615 AWELFYEQVGRVIELPHIQPFAQTIVYGCGG 645 (902)
Q Consensus 615 s~~LF~~~af~~~~~~~l~~ia~~Ia~~c~G 645 (902)
..+.|..............-....+++...|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999998886411111112234455555554
No 223
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.069 Score=62.24 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCC--------C-ceEEEEecCCCCChhhHHHHHhhccc
Q 047071 462 RTVLKILQCISGV--------E-AGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 462 ~ele~L~~~L~~~--------~-~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.|+++|+++|.++ . ++-|.++|++|.|||-||++++....
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4677788888762 1 46788999999999999999987763
No 224
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.83 E-value=0.12 Score=60.54 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=51.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCCC---CcchhhHHHHHh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCEDS---EADSDVAEKLFH 550 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~---~~~~~l~~~L~~ 550 (902)
.+.+|.++|+.|+||||+|..++.... +..+ .++.++... .....+.+..+..+++.+.... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 568999999999999999999987664 2223 334444332 1233555666777776544221 122222223333
Q ss_pred hhcCceeEEEEccch
Q 047071 551 FLNGKKFLLLLDDVW 565 (902)
Q Consensus 551 ~L~~kr~LLVLDDV~ 565 (902)
.+.+. -+||+|...
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33343 678888873
No 225
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.79 E-value=0.034 Score=58.01 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=59.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
.+|.|.|+.|.||||++..+..... ......++. +.++... ..... ..+-.+.....+.......++..++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t-~e~~~E~--~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILT-IEDPIEF--VHESK-RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEE-EcCCccc--cccCc-cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 4789999999999999998776552 222223332 1111110 00000 0000010111123445666777787778
Q ss_pred eEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCc
Q 047071 557 FLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGA 595 (902)
Q Consensus 557 ~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~v 595 (902)
=++++|.+.+.+.+...... ...|-.++.|+.....
T Consensus 76 d~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 89999999877665543322 1234456666654443
No 226
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.79 E-value=0.0053 Score=71.61 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=65.5
Q ss_pred CCCCCCCC-CcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 823 GAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 823 ~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
...+..+| .+..+..||.|.+..+.+..||..-....|..||++ |+++..||-+ |.+|++|++|-|.++-+.+=|-.
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS-cNkis~iPv~-fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS-CNKISYLPVD-FRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc-cCceeecchh-hhhhhhheeeeeccCCCCCChHH
Confidence 34455666 578888899999999999999988336678999999 9999999999 99999999999999998887754
Q ss_pred C
Q 047071 902 F 902 (902)
Q Consensus 902 I 902 (902)
|
T Consensus 253 I 253 (722)
T KOG0532|consen 253 I 253 (722)
T ss_pred H
Confidence 3
No 227
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.77 E-value=0.058 Score=67.12 Aligned_cols=77 Identities=26% Similarity=0.314 Sum_probs=49.5
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecC-------------------CCCceeCh
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRN-------------------YQLKVIPM 876 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c-------------------~~L~~LP~ 876 (902)
...+......+..+|.. ..+|++|+|++|.+..+|.. .++|+.|+|++| +.++.+|.
T Consensus 224 L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~ 299 (788)
T PRK15387 224 ITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299 (788)
T ss_pred CCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence 34455556667777754 47899999999988888754 235555555532 23444443
Q ss_pred hhhcCCCCccEEEeeCCCCccCCC
Q 047071 877 SFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 877 sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
. +++|++|||++|+|+.+|.
T Consensus 300 ~----p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 300 L----PPGLQELSVSDNQLASLPA 319 (788)
T ss_pred c----ccccceeECCCCccccCCC
Confidence 2 3578888888887777664
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.74 E-value=0.13 Score=54.90 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=67.9
Q ss_pred ccCCccccchHHHHHHHHHhh----cCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHH
Q 047071 451 EFGLFVSRSTERTVLKILQCI----SGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQND 526 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L----~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~ 526 (902)
.+....++|.+...+.|.+-. ......-|.+||-.|.|||+|++++.+.. ....-.. |.+.+.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~--~~~glrL--VEV~k~--------- 122 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY--ADEGLRL--VEVDKE--------- 122 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH--HhcCCeE--EEEcHH---------
Confidence 344455688888877776643 33445568899999999999999998776 3333222 222221
Q ss_pred HHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccch---hhhhhhhhcCCCCC---CCCCcEEEEEcccC
Q 047071 527 VLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVW---EQINLQEVGIPDPS---SENVGKIVVASRTV 593 (902)
Q Consensus 527 Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~---d~~~~~~L~~~l~~---~~~GSkIIVTTR~~ 593 (902)
+..+...+.+.|+ ...+||.|..||.. +.+....+...+.. ..+...++..|.++
T Consensus 123 ----------dl~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 0012222222222 24689999999985 22335555444432 23444555555554
No 229
>PRK14974 cell division protein FtsY; Provisional
Probab=94.71 E-value=0.15 Score=57.72 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=49.2
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCC---CCcchhhH-HHH
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCED---SEADSDVA-EKL 548 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~---~~~~~~l~-~~L 548 (902)
..+.+|.++|+.|+||||++..++.... ...+ .++.+.... .....+.+......++.+... ..+..... ..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 3468999999999999998888876553 2233 333343221 122334456666666654321 11222221 222
Q ss_pred HhhhcCceeEEEEccchh
Q 047071 549 FHFLNGKKFLLLLDDVWE 566 (902)
Q Consensus 549 ~~~L~~kr~LLVLDDV~d 566 (902)
........-++++|.+..
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 221122233899998743
No 230
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.70 E-value=0.13 Score=65.15 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhhcC-------C--CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 455 FVSRSTERTVLKILQCISG-------V--EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~-------~--~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|-+..++.|.+.+.. . ....+.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3458999999999887742 1 23467789999999999999998654
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.68 E-value=0.026 Score=63.55 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=27.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV 514 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v 514 (902)
.-+.++|..|+|||.||..+++... ... ..++|++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRG-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCC-CeEEEEEH
Confidence 6799999999999999999998763 222 34566643
No 232
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.63 E-value=0.044 Score=63.13 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=29.2
Q ss_pred ccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC-CCccCCCC
Q 047071 835 WEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-RINCLPNT 901 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~I~~LP~s 901 (902)
|.+++.|++++|.+..||... .+|+.|.+++|.++..+|.. + ..+|++|+|++| +|..||++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc
Confidence 344455555555555554211 13555555555555555543 2 234555555555 55555543
No 233
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.63 E-value=0.086 Score=65.69 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHhhcC---------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG---------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|-+..++.|...+.. .....+.++|+.|+|||+||+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999888752 124578999999999999999998766
No 234
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.62 E-value=0.094 Score=53.06 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=44.6
Q ss_pred EEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC---CCCCcchhhH-HHHHhhh
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC---EDSEADSDVA-EKLFHFL 552 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~---~~~~~~~~l~-~~L~~~L 552 (902)
++.++|++|+||||++..++...... . ..++.++.... ....+.+...+...+.+. ....+..... ..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g-~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-G-KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999987765312 1 23344443221 123333444444443322 1112333333 2233333
Q ss_pred cCceeEEEEccchh
Q 047071 553 NGKKFLLLLDDVWE 566 (902)
Q Consensus 553 ~~kr~LLVLDDV~d 566 (902)
.+..-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 44444667887643
No 235
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.62 E-value=0.25 Score=55.01 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcC---CCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 461 ERTVLKILQCISG---VEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 461 e~ele~L~~~L~~---~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
+.-.+.|.+.|.+ +...+|+|.|.=|+|||++.+.+.+..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445566677754 4678999999999999999999987774
No 236
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.097 Score=59.89 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=54.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
.-.++.++|+.|+||||++..+......+.....+.+++... .....+-++.+.+.++.+.....+..++...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 346999999999999999999987652222223556665433 234556666667777665533333344443333 344
Q ss_pred CceeEEEEccch
Q 047071 554 GKKFLLLLDDVW 565 (902)
Q Consensus 554 ~kr~LLVLDDV~ 565 (902)
++ -++++|...
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 566699874
No 237
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.11 Score=60.19 Aligned_cols=83 Identities=17% Similarity=0.076 Sum_probs=44.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc-
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN- 553 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~- 553 (902)
..++.++|++|+||||++..++........+ .+..++... .......+...++.++.+.....+. ..+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~----~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDI----KKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHH----HHHHHHHHh
Confidence 4689999999999999999997644222222 233333222 1223344455555555433211112 23333333
Q ss_pred CceeEEEEcc
Q 047071 554 GKKFLLLLDD 563 (902)
Q Consensus 554 ~kr~LLVLDD 563 (902)
...-+||+|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 2334688884
No 238
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.55 E-value=0.04 Score=65.59 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=39.6
Q ss_pred cccchHHHHHHHHHhh------cCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCI------SGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L------~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.++.+++|++.| .+..-+++.++||+|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 5799999999999999 33566899999999999999999998765
No 239
>PRK10867 signal recognition particle protein; Provisional
Probab=94.48 E-value=0.17 Score=59.00 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=47.1
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCCC---CCCcchhhHHHHH
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYCE---DSEADSDVAEKLF 549 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~~---~~~~~~~l~~~L~ 549 (902)
..+.+|.++|++|+||||++..++.....+. -..++.++.... ....+-++.+.+..+.+.. ...+...+.....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3578999999999999998888776553221 122344443221 1223344445555544321 1123334433333
Q ss_pred hhhcCcee-EEEEccch
Q 047071 550 HFLNGKKF-LLLLDDVW 565 (902)
Q Consensus 550 ~~L~~kr~-LLVLDDV~ 565 (902)
+....+.+ ++|+|-..
T Consensus 177 ~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 177 EEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333333 67777653
No 240
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.47 E-value=0.017 Score=67.05 Aligned_cols=84 Identities=21% Similarity=0.164 Sum_probs=68.3
Q ss_pred CCCceeeccCCCCCCCCC-cccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 814 EGHRFLLRAGAGLTEPPS-LKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp~-l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
.....+...+..++.+.. +..+.+|++|+|+++.|..+.....|..|+.|++. ++.|..++. +..|.+|+.|+|++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~-~N~i~~~~~--~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS-GNLISDISG--LESLKSLKLLDLSY 171 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec-cCcchhccC--CccchhhhcccCCc
Confidence 344555666677777777 88899999999999999999888888889999999 566888776 67799999999999
Q ss_pred CCCccCCC
Q 047071 893 TRINCLPN 900 (902)
Q Consensus 893 c~I~~LP~ 900 (902)
|.+..++.
T Consensus 172 n~i~~ie~ 179 (414)
T KOG0531|consen 172 NRIVDIEN 179 (414)
T ss_pred chhhhhhh
Confidence 98877654
No 241
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.46 E-value=0.02 Score=65.76 Aligned_cols=81 Identities=27% Similarity=0.308 Sum_probs=58.3
Q ss_pred eeccCCCCCCCCCccccc--ccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 819 LLRAGAGLTEPPSLKEWE--QAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 819 l~~~~~~l~~lp~l~~l~--~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
+......+..+|....+. +|+.|++.++.+..+|.. ..|++|+.|+++ ...+..+|.. .+.+..|+.|++++++|
T Consensus 121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~-~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKL-LSNLSNLNNLDLSGNKI 198 (394)
T ss_pred EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchhhhhhhh-hhhhhhhhheeccCCcc
Confidence 334444555666443332 788888888888888644 888888888888 5668888887 66888888888888888
Q ss_pred ccCCCC
Q 047071 896 NCLPNT 901 (902)
Q Consensus 896 ~~LP~s 901 (902)
..+|..
T Consensus 199 ~~l~~~ 204 (394)
T COG4886 199 SDLPPE 204 (394)
T ss_pred ccCchh
Confidence 888764
No 242
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.46 E-value=0.0063 Score=71.02 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=51.5
Q ss_pred eeccCCCCCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 819 LLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 819 l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
+.+....+..+|.--..--|++|.+++|++..+|+. +.+..|..|+.+ |+++..+|.. +++|..|+.|+++.+.+..
T Consensus 126 l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s-~nei~slpsq-l~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS-KNEIQSLPSQ-LGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred hhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhh-hhhhhhchHH-hhhHHHHHHHHHhhhhhhh
Confidence 333344444555333333467777777777777766 666667777777 6667777777 7777777777777777777
Q ss_pred CCCC
Q 047071 898 LPNT 901 (902)
Q Consensus 898 LP~s 901 (902)
||++
T Consensus 204 lp~E 207 (722)
T KOG0532|consen 204 LPEE 207 (722)
T ss_pred CCHH
Confidence 7654
No 243
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.43 E-value=0.24 Score=50.09 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=60.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccc---cc---cEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKL---IF---DVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKL 548 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~---~F---d~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L 548 (902)
.-.+++|+|+.|.|||||++.++....... .+ ..+.++.-...+....+...+.-. ....-.......-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 345899999999999999999987653211 11 112333211111111222222210 111111222333344
Q ss_pred HhhhcCceeEEEEccchhh---hhhhhhcCCCCCCCCCcEEEEEcccCCcccccCcceeEEe
Q 047071 549 FHFLNGKKFLLLLDDVWEQ---INLQEVGIPDPSSENVGKIVVASRTVGACLEMDASKLIEV 607 (902)
Q Consensus 549 ~~~L~~kr~LLVLDDV~d~---~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~~~~~~~L 607 (902)
.+.+..++-+++||.-... .....+...+... +..||++|.+..... ...+++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 5566677788899975321 1111121111111 356888887765543 23444444
No 244
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.95 Score=52.39 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcCC---------CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 462 RTVLKILQCISGV---------EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 462 ~ele~L~~~L~~~---------~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
..+++|.+++... --|--.++||+|.|||+++.+++|.. .|+. +=+.++...+-.+ ++.++..
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----~ydI-ydLeLt~v~~n~d-Lr~LL~~-- 283 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----NYDI-YDLELTEVKLDSD-LRHLLLA-- 283 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----CCce-EEeeeccccCcHH-HHHHHHh--
Confidence 3455566666542 12456789999999999999998877 3432 2222222211111 2222211
Q ss_pred cCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh--------------------hhhhcCCCC--CCCC-CcEEEE-
Q 047071 533 LYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN--------------------LQEVGIPDP--SSEN-VGKIVV- 588 (902)
Q Consensus 533 ~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~--------------------~~~L~~~l~--~~~~-GSkIIV- 588 (902)
...+.+|||+|++-.-+ +.-|+..+. +..+ +-||||
T Consensus 284 --------------------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivF 343 (457)
T KOG0743|consen 284 --------------------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVF 343 (457)
T ss_pred --------------------CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEE
Confidence 24567888888863210 111222221 2222 346655
Q ss_pred EcccCCc-----ccccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccc
Q 047071 589 ASRTVGA-----CLEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRAL 657 (902)
Q Consensus 589 TTR~~~v-----a~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~L 657 (902)
||...+- .+.-...--+.+.--+.+.-..||....+... ...++.+|.+...|.-+.=..++..|
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~----~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE----DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC----CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 6654332 12112344678888899999999998887622 23456677776666655545555444
No 245
>PRK04296 thymidine kinase; Provisional
Probab=94.43 E-value=0.038 Score=57.32 Aligned_cols=112 Identities=14% Similarity=-0.014 Sum_probs=61.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCC--CCcchhhHHHHHhhhcC
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCED--SEADSDVAEKLFHFLNG 554 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~--~~~~~~l~~~L~~~L~~ 554 (902)
.++.|+|+.|.||||+|..+..... .+...++.+. ..++.......++..++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4678999999999999988877663 2222333332 1112222233445555432211 1123344444444 233
Q ss_pred ceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCCc
Q 047071 555 KKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVGA 595 (902)
Q Consensus 555 kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~v 595 (902)
+.-+||+|.+.-. ++...+...+ ...|..||+|.++...
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 4569999998532 2233332221 2357789999987554
No 246
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.38 E-value=0.12 Score=55.04 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
+...+++|.|+.|.|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999987663
No 247
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.30 E-value=0.16 Score=57.05 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=40.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccccc----ccccEEEEeeccccCcHHHHHHHHHHhcCc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTK----LIFDVIILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr----~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
.-.++-|+|++|+|||+|+.+++-..... ..-..++|++....|++.++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34688999999999999998876322111 1124689999888888877654 4555543
No 248
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.26 E-value=0.096 Score=53.54 Aligned_cols=118 Identities=21% Similarity=0.137 Sum_probs=61.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc--cCcHHH------HHHHHHHhcCcCC-----CCCCcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR--YWSVRK------IQNDVLRQLPLYC-----EDSEAD 541 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~--~~~~~~------ll~~Il~~L~~~~-----~~~~~~ 541 (902)
.-.+++|+|+.|.|||||.+.++.... ...+.+++.-.. ..+... ...++++.++... ...-+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 346899999999999999999987652 233444443111 111111 1112444444322 111111
Q ss_pred -hhhHHHHHhhhcCceeEEEEccchh---hhhhhhhcCCCCC-CCC-CcEEEEEcccCCc
Q 047071 542 -SDVAEKLFHFLNGKKFLLLLDDVWE---QINLQEVGIPDPS-SEN-VGKIVVASRTVGA 595 (902)
Q Consensus 542 -~~l~~~L~~~L~~kr~LLVLDDV~d---~~~~~~L~~~l~~-~~~-GSkIIVTTR~~~v 595 (902)
....-.+-+.+-..+-++++|..-. ......+...+.. ... |..||++|.+...
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 2222334556667888999998642 1222222222211 112 5678888877554
No 249
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.25 E-value=0.14 Score=53.37 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 473 GVEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 473 ~~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
..+-++..|.|++|.||||++..+.....
T Consensus 15 ~~~~~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 15 TSGDRVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp HCTCSEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred hcCCeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 34457889999999999999999876654
No 250
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.18 E-value=0.12 Score=52.68 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|.|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998764
No 251
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.17 E-value=0.0069 Score=65.70 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=64.2
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
+++.....++..+.++..+.+|..|||++|.+.++-.- .+|-|.++|.|. .+.|..|.. +++|.+|.+||+++++|
T Consensus 310 r~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La-~N~iE~LSG--L~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 310 RRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA-QNKIETLSG--LRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh-hhhHhhhhh--hHhhhhheeccccccch
Confidence 34444445566666778888999999999988887766 889999999999 455777765 89999999999999998
Q ss_pred ccCC
Q 047071 896 NCLP 899 (902)
Q Consensus 896 ~~LP 899 (902)
++|-
T Consensus 387 e~ld 390 (490)
T KOG1259|consen 387 EELD 390 (490)
T ss_pred hhHH
Confidence 8763
No 252
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.17 E-value=0.14 Score=53.15 Aligned_cols=24 Identities=50% Similarity=0.582 Sum_probs=21.7
Q ss_pred EEEEecCCCCChhhHHHHHhhccc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
||+|.|++|+||||||+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987663
No 253
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.17 Score=60.01 Aligned_cols=89 Identities=24% Similarity=0.236 Sum_probs=48.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
...+|+|+|++|+||||++..++.....+.....+..++... .....+.+....+.++.......+...+...+. .+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hhc
Confidence 357999999999999999988876542222223455554432 112233333333444433322223334443333 333
Q ss_pred CceeEEEEccch
Q 047071 554 GKKFLLLLDDVW 565 (902)
Q Consensus 554 ~kr~LLVLDDV~ 565 (902)
..-+|++|...
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588889874
No 254
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.18 Score=58.80 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=73.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH---- 550 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~---- 550 (902)
++..+.+.|++|+|||+||..++... .|..+--++-..- ...+.......+++
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~m-------------------iG~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDM-------------------IGLSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHc-------------------cCccHHHHHHHHHHHHHH
Confidence 45678889999999999999997644 5554333321111 11122233333333
Q ss_pred hhcCceeEEEEccchhhhhhhhhcCCCC------------C-CCCCcEE--EEEcccCCcccccCc----ceeEEecccC
Q 047071 551 FLNGKKFLLLLDDVWEQINLQEVGIPDP------------S-SENVGKI--VVASRTVGACLEMDA----SKLIEVETVS 611 (902)
Q Consensus 551 ~L~~kr~LLVLDDV~d~~~~~~L~~~l~------------~-~~~GSkI--IVTTR~~~va~~~~~----~~~~~L~~Ls 611 (902)
.-+..-..||+||+...-+|-.+.+.+. . ...|-|. +-||....+...++. ...|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 3355667999999988777766544321 1 1234444 446666667666653 3467788887
Q ss_pred H-HHHHHHHHH
Q 047071 612 K-KEAWELFYE 621 (902)
Q Consensus 612 ~-ees~~LF~~ 621 (902)
. ++..+.++.
T Consensus 674 ~~~~~~~vl~~ 684 (744)
T KOG0741|consen 674 TGEQLLEVLEE 684 (744)
T ss_pred chHHHHHHHHH
Confidence 6 556665554
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.11 E-value=0.67 Score=50.03 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=97.4
Q ss_pred CCccccchHHHHHH---HHHhhcCC------CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHH
Q 047071 453 GLFVSRSTERTVLK---ILQCISGV------EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKI 523 (902)
Q Consensus 453 ~~~~~VGRe~ele~---L~~~L~~~------~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~l 523 (902)
-.++.||.+..+.+ |+..|.++ .++-|..+|++|.|||-+|+.+++... ..| +-+ ...++
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~---l~v------kat~l 187 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL---LLV------KATEL 187 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce---EEe------chHHH
Confidence 34567898876654 45666652 478899999999999999999998773 332 111 11111
Q ss_pred HHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhh--------------hhhhhhcCCCCC--CCCCcEE
Q 047071 524 QNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQ--------------INLQEVGIPDPS--SENVGKI 586 (902)
Q Consensus 524 l~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~--------------~~~~~L~~~l~~--~~~GSkI 586 (902)
+ -+..+ +....+..+.++- +.-++++.||.++-. +...+++..+.. .+.|-..
T Consensus 188 i---GehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 I---GEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred H---HHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1 11111 2223333333333 356899999987532 123333333322 3345555
Q ss_pred EEEcccCCccccc---CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 587 VVASRTVGACLEM---DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 587 IVTTR~~~va~~~---~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
|-.|.+....... .-...++..-.+++|-.+++...+-. .+.+ ...-.+.++++.+|+.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-~Plp-v~~~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-FPLP-VDADLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh-CCCc-cccCHHHHHHHhCCCC
Confidence 5555555543211 12345777778889999999888754 1111 1222567777777643
No 256
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.10 E-value=0.18 Score=58.82 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=49.5
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
.+++.++|++|+||||++..++........-..+..++....- ...+.+....+.++.+.....+..++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 4699999999999999988887655211222355666554321 12233444455555444333344444444443 23
Q ss_pred ceeEEEEccc
Q 047071 555 KKFLLLLDDV 564 (902)
Q Consensus 555 kr~LLVLDDV 564 (902)
..=+|++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3468888965
No 257
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.13 Score=61.90 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=83.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC--cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW--SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~--~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
..-|.|.|+.|+|||+||+.+++... +...-.+.+++++.-. ....+++.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 35788999999999999999998886 5555555566555432 222332222 122334556
Q ss_pred CceeEEEEccchhh--------hhhhh----hcCCC-----CCCCCCcE--EEEEcccCCccc-----ccCcceeEEecc
Q 047071 554 GKKFLLLLDDVWEQ--------INLQE----VGIPD-----PSSENVGK--IVVASRTVGACL-----EMDASKLIEVET 609 (902)
Q Consensus 554 ~kr~LLVLDDV~d~--------~~~~~----L~~~l-----~~~~~GSk--IIVTTR~~~va~-----~~~~~~~~~L~~ 609 (902)
..+.+|||||++-. .+|.. +...+ .....+.+ +|.|.....-.. ..--.....|..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 78999999999632 11211 10000 01233444 334444322211 111223567888
Q ss_pred cCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC-cchhhh
Q 047071 610 VSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL-PLLIIV 652 (902)
Q Consensus 610 Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl-PLAL~v 652 (902)
+...+-.++++...-... .........-++.+|+|. |.-+.+
T Consensus 573 p~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred cchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCccchhHHH
Confidence 888877777765443311 111122233366777664 444443
No 258
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.24 Score=57.06 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=54.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccccc--ccccEEEEeecccc-CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTK--LIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF 551 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr--~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~ 551 (902)
..++|.++|+.|+||||.+..++...... ..-..+..++.... .....-++.+.+.++.+.....+..++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 45799999999999999998887665322 12234555555432 223334666666676654333344444444433
Q ss_pred hcCceeEEEEccch
Q 047071 552 LNGKKFLLLLDDVW 565 (902)
Q Consensus 552 L~~kr~LLVLDDV~ 565 (902)
+ ...-++++|.+.
T Consensus 252 ~-~~~DlVLIDTaG 264 (388)
T PRK12723 252 S-KDFDLVLVDTIG 264 (388)
T ss_pred h-CCCCEEEEcCCC
Confidence 2 345688899874
No 259
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.83 E-value=0.098 Score=56.56 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=67.5
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccc-----c------ccc---cEEEEeecccc----C--cH---------------
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKT-----K------LIF---DVIILVTVSRY----W--SV--------------- 520 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~v-----r------~~F---d~i~WV~vs~~----~--~~--------------- 520 (902)
-.+++|+|+.|.|||||.+.+..-..- . ..+ ..+.||.-... | ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 369999999999999999999863210 0 001 24556542111 1 11
Q ss_pred -------HHHHHHHHHhcCcCC-----CCCCcchhhHH-HHHhhhcCceeEEEEccc------hhhhhhhhhcCCCCCCC
Q 047071 521 -------RKIQNDVLRQLPLYC-----EDSEADSDVAE-KLFHFLNGKKFLLLLDDV------WEQINLQEVGIPDPSSE 581 (902)
Q Consensus 521 -------~~ll~~Il~~L~~~~-----~~~~~~~~l~~-~L~~~L~~kr~LLVLDDV------~d~~~~~~L~~~l~~~~ 581 (902)
.+...+.++.++... ...-+..+.++ .+.+.|..++=||+||.- ......-.+...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 234445555554332 22223344444 445677889999999953 233334444433332
Q ss_pred CCcEEEEEcccCCc
Q 047071 582 NVGKIVVASRTVGA 595 (902)
Q Consensus 582 ~GSkIIVTTR~~~v 595 (902)
.|..||++|.+-..
T Consensus 188 eg~tIl~vtHDL~~ 201 (254)
T COG1121 188 EGKTVLMVTHDLGL 201 (254)
T ss_pred CCCEEEEEeCCcHH
Confidence 27889999988554
No 260
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.83 E-value=0.09 Score=53.06 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=57.5
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEee---ccccCcHHHHHHHHHHhc-----CcCC-CCCCcchh----
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVT---VSRYWSVRKIQNDVLRQL-----PLYC-EDSEADSD---- 543 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~---vs~~~~~~~ll~~Il~~L-----~~~~-~~~~~~~~---- 543 (902)
..|-|++..|.||||+|...+-... ...+ .+.++. -........+++.+ ..+ +... ....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~-~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL-GHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH-HCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888889999999977764442 2222 333333 22223344444333 111 0000 00011111
Q ss_pred ---hHHHHHhhhcC-ceeEEEEccchhh-----hhhhhhcCCCCCCCCCcEEEEEcccCC
Q 047071 544 ---VAEKLFHFLNG-KKFLLLLDDVWEQ-----INLQEVGIPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 544 ---l~~~L~~~L~~-kr~LLVLDDV~d~-----~~~~~L~~~l~~~~~GSkIIVTTR~~~ 594 (902)
.....++.+.. +-=|||||.+... -+.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12223333433 4459999998543 122333333334445678999999854
No 261
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.82 E-value=0.14 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|+|.|..|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 262
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.82 E-value=0.24 Score=55.61 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=38.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
.-.++.|+|.+|+|||+|+..++....... .-..++|++....+...++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 457899999999999999998875321111 1135789988777777653 34444443
No 263
>PRK06547 hypothetical protein; Provisional
Probab=93.80 E-value=0.073 Score=54.42 Aligned_cols=34 Identities=35% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 467 ILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 467 L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+...+......+|+|.|++|+||||||+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555678899999999999999999998754
No 264
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.78 E-value=0.039 Score=52.16 Aligned_cols=22 Identities=55% Similarity=0.748 Sum_probs=19.6
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|.|+.|+||||||+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999997663
No 265
>PRK07667 uridine kinase; Provisional
Probab=93.78 E-value=0.068 Score=55.47 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=28.8
Q ss_pred HHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 464 VLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 464 le~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666643 345799999999999999999998765
No 266
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.76 E-value=0.033 Score=34.83 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=10.5
Q ss_pred CCccEEEeeCCCCccCC
Q 047071 883 TSLKVLNLSKTRINCLP 899 (902)
Q Consensus 883 ~~Lr~LdLs~c~I~~LP 899 (902)
++|+.|+|++|+|++||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36888888888888887
No 267
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.72 E-value=0.021 Score=38.04 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=11.6
Q ss_pred CccEEEeeCCCCccCCCC
Q 047071 884 SLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 884 ~Lr~LdLs~c~I~~LP~s 901 (902)
+|++|||++|+|+.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 466666666666666665
No 268
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.70 E-value=0.29 Score=55.49 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=40.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccc----cccccEEEEeeccccCcHHHHHHHHHHhcCc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKT----KLIFDVIILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~v----r~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
.-.++-|+|.+|+|||+|+.+++-.... ...-..++|++....|.+.++.. +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3468889999999999999888632211 11124689999998888887654 4555543
No 269
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.65 E-value=0.044 Score=53.58 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 458 RSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 458 VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
||+-..++++.+.+.. ....-|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4555566666666543 344567899999999999999998765
No 270
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.61 E-value=0.23 Score=56.05 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=47.4
Q ss_pred CceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccCC-cccc-cCcceeEEecccCHHHHHHHHHHHhcCcccC
Q 047071 554 GKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTVG-ACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIEL 629 (902)
Q Consensus 554 ~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~~-va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~ 629 (902)
+++-++|+|+++..+ .-..+...+.....+..+|++|.+.. +... ......+.+.+++.++....+.....
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~----- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV----- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC-----
Confidence 344455668886542 22222222221223455666776643 3322 22356789999999999888765311
Q ss_pred CCCcchHHHHHHHhCCCcchh
Q 047071 630 PHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 630 ~~l~~ia~~Ia~~c~GlPLAL 650 (902)
.. ....+..++|.|+.+
T Consensus 187 ---~~-~~~~l~~~~g~p~~~ 203 (325)
T PRK08699 187 ---AE-PEERLAFHSGAPLFD 203 (325)
T ss_pred ---Cc-HHHHHHHhCCChhhh
Confidence 11 112245688988643
No 271
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.57 E-value=0.033 Score=37.04 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=17.8
Q ss_pred CccEEEeecCCCCceeChhhhcCC
Q 047071 859 ELSVLFLQRNYQLKVIPMSFFQFM 882 (902)
Q Consensus 859 ~Lr~L~Ls~c~~L~~LP~sfIg~L 882 (902)
+|++|+|++| .++.||++ |++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT-
T ss_pred CccEEECCCC-cCEeCChh-hcCC
Confidence 5899999977 78899998 7765
No 272
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.17 Score=55.91 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=49.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccccc--ccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTK--LIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL 552 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr--~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L 552 (902)
..|+|.++||+|.|||+|.+.+++...+| ..|....-+.+ +-..++......- ......+..++.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi----nshsLFSKWFsES------gKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI----NSHSLFSKWFSES------GKLVAKMFQKIQELV 245 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE----ehhHHHHHHHhhh------hhHHHHHHHHHHHHH
Confidence 35899999999999999999999988764 23322222222 2233333333221 113445556666666
Q ss_pred cCce--eEEEEccchh
Q 047071 553 NGKK--FLLLLDDVWE 566 (902)
Q Consensus 553 ~~kr--~LLVLDDV~d 566 (902)
.++. +.+.+|.|..
T Consensus 246 ~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVES 261 (423)
T ss_pred hCCCcEEEEEeHHHHH
Confidence 6554 4556788864
No 273
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.51 E-value=0.23 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=22.6
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+.+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998775443
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.47 E-value=0.19 Score=54.67 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=68.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-----cCcHHHHHHHHHHhcCcCC------CCCCcchh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-----YWSVRKIQNDVLRQLPLYC------EDSEADSD 543 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-----~~~~~~ll~~Il~~L~~~~------~~~~~~~~ 543 (902)
.-.+++|+|.+|.|||||++.+..-.. .-.+.+++.-.+ .....+-..+++..++... +..-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 446999999999999999999986552 222333333111 2234445566677666443 22223333
Q ss_pred hHH-HHHhhhcCceeEEEEccchhh------hhhhhhcCCCCCCCCCcEEEEEcccCCccccc
Q 047071 544 VAE-KLFHFLNGKKFLLLLDDVWEQ------INLQEVGIPDPSSENVGKIVVASRTVGACLEM 599 (902)
Q Consensus 544 l~~-~L~~~L~~kr~LLVLDDV~d~------~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~ 599 (902)
.++ .+.+.|.-++-|+|.|..-+. .+...+...+. ...|-..+..|.+-.+...+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 333 455677889999999975432 22222222221 12345567777776665443
No 275
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.40 E-value=0.11 Score=59.02 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+..++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999999887
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.39 E-value=0.065 Score=53.81 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=26.4
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
--|.|.|++|+|||||++.+.+..+.. .|...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEE
Confidence 468999999999999999999877532 25444333
No 277
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.39 E-value=0.29 Score=52.44 Aligned_cols=141 Identities=11% Similarity=0.066 Sum_probs=71.2
Q ss_pred EEEEecCCCCChhhHHHHHhhccccccc----------ccEEEEeeccccC-cHHHHHHHHHHhcCcCC-------C---
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLI----------FDVIILVTVSRYW-SVRKIQNDVLRQLPLYC-------E--- 536 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~----------Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~-------~--- 536 (902)
+..|+|++|+|||+||..++-....... =-.+++++...+. .+.+-+..+...+.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999998754321111 1235555554443 24444445554432110 0
Q ss_pred ------CC---CcchhhHHHHHhhh-cCceeEEEEccchh--------hhhhhhhcCCCCC--CCCCcEEEEEcccCCcc
Q 047071 537 ------DS---EADSDVAEKLFHFL-NGKKFLLLLDDVWE--------QINLQEVGIPDPS--SENVGKIVVASRTVGAC 596 (902)
Q Consensus 537 ------~~---~~~~~l~~~L~~~L-~~kr~LLVLDDV~d--------~~~~~~L~~~l~~--~~~GSkIIVTTR~~~va 596 (902)
.. .........+.+.+ ..+.-+||+|.+.. ......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 00 01122233333333 34677999997632 2222222222211 23467788877755322
Q ss_pred c--------cc-------CcceeEEecccCHHHHHHH
Q 047071 597 L--------EM-------DASKLIEVETVSKKEAWEL 618 (902)
Q Consensus 597 ~--------~~-------~~~~~~~L~~Ls~ees~~L 618 (902)
. .. +....+.+.+++++++.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 1 00 1234677788888877663
No 278
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.37 E-value=0.046 Score=62.69 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=61.0
Q ss_pred CcccccccEEEeccCCCcccCCCC-CCCC-CccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 831 SLKEWEQAKFIFLMDNELCTLPEK-PSCS-ELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~-~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
.+..+..+..|++.++.+..+|.. ..+. +|+.|+++ ...+..+|.. +++|++|+.|++++|+|..+|..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhccccccc-ccchhhhhhh-hhccccccccccCCchhhhhhhh
Confidence 455567899999999999999998 5553 99999999 7889999877 99999999999999999999874
No 279
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.35 E-value=0.17 Score=61.19 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL- 552 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L- 552 (902)
+.-+++.++|++|+||||||.-++++. .| .++=++.|+.-+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------ccc
Confidence 456899999999999999999998754 33 3456777777766666666655443322 22
Q ss_pred -cCceeEEEEccchh
Q 047071 553 -NGKKFLLLLDDVWE 566 (902)
Q Consensus 553 -~~kr~LLVLDDV~d 566 (902)
.+++..||+|.++-
T Consensus 384 adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDG 398 (877)
T ss_pred cCCCcceEEEecccC
Confidence 26788899998864
No 280
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.18 Score=51.15 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999998765
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.30 E-value=0.44 Score=54.55 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=54.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL- 552 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L- 552 (902)
+.+++.|+|+.|+||||++..++.... ..-..+.+++..... ...+-++...+.++.+.....+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467999999999999999999886552 222346666654332 2345566666666654432334555544443321
Q ss_pred cCceeEEEEccch
Q 047071 553 NGKKFLLLLDDVW 565 (902)
Q Consensus 553 ~~kr~LLVLDDV~ 565 (902)
.+..=+|++|-..
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 1345678888774
No 282
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.28 E-value=0.37 Score=56.18 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=34.8
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPL 533 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~ 533 (902)
..+.+|.++|+.|+||||++..++.... +..+ .++.++.... ....+-++...+..+.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~v 156 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQ-RKGF-KPCLVCADTFRAGAFDQLKQNATKARI 156 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCC-CEEEEcCcccchhHHHHHHHHhhccCC
Confidence 3468999999999999999998876653 2222 3444443221 1233333444544443
No 283
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.27 E-value=0.25 Score=54.23 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=49.7
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC---CCCCcchhh-HHHH
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC---EDSEADSDV-AEKL 548 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~---~~~~~~~~l-~~~L 548 (902)
...+++.++|++|+||||++..++.... ..-..+..++.... ....+-+....+..+.+. ....+.... ...+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4568999999999999999988876653 22234556654421 112334444555555332 111122222 2333
Q ss_pred HhhhcCceeEEEEccch
Q 047071 549 FHFLNGKKFLLLLDDVW 565 (902)
Q Consensus 549 ~~~L~~kr~LLVLDDV~ 565 (902)
.....+..-++++|-..
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 33333445688888763
No 284
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.16 E-value=0.013 Score=70.07 Aligned_cols=67 Identities=27% Similarity=0.328 Sum_probs=56.2
Q ss_pred CCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 826 LTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 826 l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+.+...+..+.+|+.|||++|.+..+|.. ..|. |+.|+|+ ++.++.|.. |.+|++|+.|||+++-|.
T Consensus 199 ~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr-nN~l~tL~g--ie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 199 FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR-NNALTTLRG--IENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeec-ccHHHhhhh--HHhhhhhhccchhHhhhh
Confidence 34444677788999999999999999998 4555 9999999 677999987 899999999999998443
No 285
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=1.5 Score=52.43 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=76.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh-hc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF-LN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~-L~ 553 (902)
.+.-|.+||++|.|||-||++|+|.. +-+| +++-.+ +++..... ..+..++.+..+ =.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----ELlNkYVG----------ESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----ELLNKYVG----------ESERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----HHHHHHhh----------hHHHHHHHHHHHhhc
Confidence 35568899999999999999999987 5565 333222 22222111 122233333333 34
Q ss_pred CceeEEEEccchhh-------------hhhhhhcCCCCC--CCCCcEEEEEcccCCccc-----ccCcceeEEecccCHH
Q 047071 554 GKKFLLLLDDVWEQ-------------INLQEVGIPDPS--SENVGKIVVASRTVGACL-----EMDASKLIEVETVSKK 613 (902)
Q Consensus 554 ~kr~LLVLDDV~d~-------------~~~~~L~~~l~~--~~~GSkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~e 613 (902)
..+++|.||.++.. .....|+..+.. ...|--||-.|..+.+.. .-.-...+-++..+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 67999999998642 112333333322 223444555555444421 1123567788888999
Q ss_pred HHHHHHHHHhcC
Q 047071 614 EAWELFYEQVGR 625 (902)
Q Consensus 614 es~~LF~~~af~ 625 (902)
|-..+++...-.
T Consensus 683 eR~~ILK~~tkn 694 (802)
T KOG0733|consen 683 ERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHhcc
Confidence 999999888763
No 286
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=93.13 E-value=0.055 Score=63.59 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=54.9
Q ss_pred CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 831 SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
.+..+..|+.|+|++|.|..+... +-++.|+.|+|+ .+.|+.||++.+..|..|+.|+|++++|..|-+
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs-~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS-SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEecc-ccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 356677888888888888876555 677888889998 777888888778888888999998888776543
No 287
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.02 E-value=0.43 Score=53.52 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=39.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccccccc----ccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLI----FDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~----Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
.-.++-|+|++|+|||+|+.+++-....... =..++|++....+++.++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 3578999999999999999998754321111 14789999888888776654 34444
No 288
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.00 E-value=0.078 Score=55.50 Aligned_cols=27 Identities=41% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998765
No 289
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=2.6 Score=51.79 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=60.5
Q ss_pred cccCCccccchHHHHHHHHHhhcC---------CC---ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 450 HEFGLFVSRSTERTVLKILQCISG---------VE---AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 450 ~~~~~~~~VGRe~ele~L~~~L~~---------~~---~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
+...-+++=|.++.+.+|.+-+.- .+ ..=|.++|++|.|||-||++|+-.. . .-|++|-.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------s-L~FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------S-LNFLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------e-eeEEeecCH
Confidence 333344556788888888887632 22 3468899999999999999996544 2 234555443
Q ss_pred CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh
Q 047071 518 WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ 567 (902)
Q Consensus 518 ~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~ 567 (902)
+++...+. .+.+...+.+.+.=..++|+|.||.+++.
T Consensus 740 ----ELLNMYVG---------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ----ELLNMYVG---------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHHHHHhc---------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22222211 13333333333344568999999998753
No 290
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.26 Score=54.19 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=56.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-CCCCcchhh---HHHHHh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-EDSEADSDV---AEKLFH 550 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-~~~~~~~~l---~~~L~~ 550 (902)
.-+++=|+|+.|.||||||.+++-.. +..-..++|++....+++..+..-....+..-. ....+.++. +..+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh--hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 45789999999999999999987555 444458899999888887766443332121111 222233333 333333
Q ss_pred hhcCceeEEEEccch
Q 047071 551 FLNGKKFLLLLDDVW 565 (902)
Q Consensus 551 ~L~~kr~LLVLDDV~ 565 (902)
....+--|+|+|.+-
T Consensus 137 ~~~~~i~LvVVDSva 151 (279)
T COG0468 137 SGAEKIDLLVVDSVA 151 (279)
T ss_pred hccCCCCEEEEecCc
Confidence 333345699999874
No 291
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.96 E-value=0.34 Score=54.01 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=39.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
.-.++-|+|.+|+|||+|+.+++....... .-..++|++....+++.++. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 357889999999999999999876542110 11378999988888877654 344444
No 292
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.94 E-value=0.41 Score=51.30 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=32.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQND 526 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~ 526 (902)
.-.++.|.|.+|+|||+||.++....- ..-..++|++... ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHH
Confidence 457899999999999999988754331 2235677887654 34444444
No 293
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.94 E-value=0.43 Score=56.42 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=49.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
..|++++|+.|+||||++..++.....+.....+..+.... .....+-++.+.+.++.+.....+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987653222222345555432 22344555555666555432222222322222 23344
Q ss_pred ceeEEEEccch
Q 047071 555 KKFLLLLDDVW 565 (902)
Q Consensus 555 kr~LLVLDDV~ 565 (902)
+ -.+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 467777764
No 294
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.91 E-value=0.072 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999997555
No 295
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.89 E-value=0.46 Score=53.93 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=40.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
.-.++-|.|.+|+|||+|+..++-...... .-..++|++....|.+.++. ++++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 356888999999999999988874321111 11368999999988887764 5555554
No 296
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.88 E-value=0.13 Score=56.43 Aligned_cols=87 Identities=21% Similarity=0.318 Sum_probs=47.3
Q ss_pred HHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh-cCcCCCCCCcchh
Q 047071 465 LKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ-LPLYCEDSEADSD 543 (902)
Q Consensus 465 e~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~-L~~~~~~~~~~~~ 543 (902)
..+++.+...+ +-+.++|+.|+|||++++...+... ...|- ..-++.+...+...++. ++++ +.... .
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~-~~~~~-~~~~~~s~~Tts~~~q~-~ie~~l~k~~--~----- 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD-SDKYL-VITINFSAQTTSNQLQK-IIESKLEKRR--G----- 91 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST-TCCEE-EEEEES-TTHHHHHHHH-CCCTTECECT--T-----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC-ccccc-eeEeeccCCCCHHHHHH-HHhhcEEcCC--C-----
Confidence 44555555544 4557999999999999999876543 22222 33344554444443332 2221 11100 0
Q ss_pred hHHHHHhhhcCceeEEEEccch
Q 047071 544 VAEKLFHFLNGKKFLLLLDDVW 565 (902)
Q Consensus 544 l~~~L~~~L~~kr~LLVLDDV~ 565 (902)
....--.+|+.++.+||+.
T Consensus 92 ---~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 92 ---RVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ---EEEEEESSSEEEEEEETTT
T ss_pred ---CCCCCCCCcEEEEEecccC
Confidence 0000114689999999985
No 297
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.85 E-value=0.4 Score=53.04 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 465 LKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 465 e~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++...++...+..+|.|.|.+|+|||||+..+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445555666788999999999999999999998876
No 298
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.095 Score=64.61 Aligned_cols=158 Identities=10% Similarity=0.080 Sum_probs=86.1
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccc---c--cccEEEEeeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTK---L--IFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr---~--~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
..+|.+||+.|+.++++.|....-.--.++|.+|||||++|.-++...--. . ....++-++ +
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------L 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------H
Confidence 457889999999999999965211122358999999999888776544110 0 111111111 1
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhhc-CceeEEEEccchhhhh--------hhhhcCCCCCCCCCc-EEE-EEcccCC--
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFLN-GKKFLLLLDDVWEQIN--------LQEVGIPDPSSENVG-KIV-VASRTVG-- 594 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L~-~kr~LLVLDDV~d~~~--------~~~L~~~l~~~~~GS-kII-VTTR~~~-- 594 (902)
..-+...... .+.++....+.+.++ ..+..|.+|.+...-- .+.-...-|....|. +.| .||-++.
T Consensus 235 g~LvAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 235 GSLVAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred HHHhcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 1111111122 245555555555553 4589999998864310 111111112222332 333 4554321
Q ss_pred -c---ccccCcceeEEecccCHHHHHHHHHHHhc
Q 047071 595 -A---CLEMDASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 595 -v---a~~~~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
+ +......+.+.++..+.+++...++-...
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 1 11123467889999999999999876543
No 299
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.82 E-value=0.24 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.5
Q ss_pred CceEEEEecCCCCChhhHHHHHh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALI 497 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy 497 (902)
.-.+++|+|+.|.|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44689999999999999999885
No 300
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.82 E-value=0.47 Score=58.83 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=35.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC 535 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~ 535 (902)
.++++++|+.|+||||++..++...........+..+..... ....+-++...+.++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 479999999999999999888765522222234455543321 123344455555554433
No 301
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.77 E-value=0.057 Score=62.76 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=59.6
Q ss_pred CcccccccEEEeccCCCcccCCC-CCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 831 SLKEWEQAKFIFLMDNELCTLPE-KPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~LP~-~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
.+..++.|..|+|.++.|..+.. ...|.+|++|+|+ .+.|..+.. +..|..|+.|++++|.|..++.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls-~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS-FNKITKLEG--LSTLTLLKELNLSGNLISDISG 157 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheecc-ccccccccc--hhhccchhhheeccCcchhccC
Confidence 36678899999999999999999 6999999999999 777999887 7999999999999998877653
No 302
>PRK06762 hypothetical protein; Provisional
Probab=92.76 E-value=0.081 Score=53.11 Aligned_cols=25 Identities=44% Similarity=0.404 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999997665
No 303
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.75 E-value=0.3 Score=57.44 Aligned_cols=90 Identities=20% Similarity=0.287 Sum_probs=57.5
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcch------
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADS------ 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~------ 542 (902)
-..++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.++...+...-.... ....+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35799999999999999988887664 2356788888776554 56677777765422111 1111111
Q ss_pred hhHHHHHhhh---cCceeEEEEccchh
Q 047071 543 DVAEKLFHFL---NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 ~l~~~L~~~L---~~kr~LLVLDDV~d 566 (902)
...-.+-+++ .++++||++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1112233444 37899999999854
No 304
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.66 E-value=0.07 Score=57.32 Aligned_cols=76 Identities=25% Similarity=0.258 Sum_probs=52.5
Q ss_pred ccCCCCCCCCCcccccccEEEeccCCC--c-ccCCCC-CCCCCccEEEeecCC--CCceeChhhhcCCCCccEEEeeCCC
Q 047071 821 RAGAGLTEPPSLKEWEQAKFIFLMDNE--L-CTLPEK-PSCSELSVLFLQRNY--QLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 821 ~~~~~l~~lp~l~~l~~Lr~L~L~~~~--i-~~LP~~-~~L~~Lr~L~Ls~c~--~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.++..+..+..+.+|+.|.+++|. + ..++-. .++++|++|+|+++. .+..+++ ..+|.+|..||+.+|.
T Consensus 50 ~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 50 VINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCS 127 (260)
T ss_pred hhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCC
Confidence 344455556666677788999998883 2 235544 677999999998654 2456666 5788888899998885
Q ss_pred CccC
Q 047071 895 INCL 898 (902)
Q Consensus 895 I~~L 898 (902)
...|
T Consensus 128 ~~~l 131 (260)
T KOG2739|consen 128 VTNL 131 (260)
T ss_pred cccc
Confidence 5443
No 305
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=92.63 E-value=0.16 Score=52.54 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=36.6
Q ss_pred chhhHHHHHhhhcCceeEEEEcc----chhhhhhhhhcCCCCCCCCCcEEEEEcccCCccccc
Q 047071 541 DSDVAEKLFHFLNGKKFLLLLDD----VWEQINLQEVGIPDPSSENVGKIVVASRTVGACLEM 599 (902)
Q Consensus 541 ~~~l~~~L~~~L~~kr~LLVLDD----V~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~ 599 (902)
.++..-.+.+.+-+++-||+-|. ++....|+-+...-.-+..|..||++|.+..+...+
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34444556677778899999884 443333443321111245689999999998775544
No 306
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.60 E-value=0.092 Score=55.00 Aligned_cols=26 Identities=42% Similarity=0.450 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|++|+|||||++.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998755
No 307
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.60 E-value=0.16 Score=57.50 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=40.4
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++..+||.+..+..|+-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 456679999999998877777667778899999999999999997543
No 308
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=1.1 Score=54.00 Aligned_cols=171 Identities=12% Similarity=0.050 Sum_probs=87.7
Q ss_pred ccccchHHHH---HHHHHhhcCC---------CceEEEEecCCCCChhhHHHHHhhcccccccc-cEEEEeeccccCcHH
Q 047071 455 FVSRSTERTV---LKILQCISGV---------EAGKIGIHGISGIGKTTVLKALISYPKTKLIF-DVIILVTVSRYWSVR 521 (902)
Q Consensus 455 ~~~VGRe~el---e~L~~~L~~~---------~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F-d~i~WV~vs~~~~~~ 521 (902)
...-|.++.+ .+++++|.++ -++-+.++|++|.|||.||++++....|-..+ .+.-||
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV--------- 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV--------- 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh---------
Confidence 3446766554 4455566652 14568899999999999999999887542222 111111
Q ss_pred HHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh------------h----hhhhhcCCCCCCCC--C
Q 047071 522 KIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ------------I----NLQEVGIPDPSSEN--V 583 (902)
Q Consensus 522 ~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~------------~----~~~~L~~~l~~~~~--G 583 (902)
+.+- ............+..++-++++++|.++.. + .+..++.....++. |
T Consensus 221 -------emfV-----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 221 -------EMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred -------hhhc-----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 0000 001112223333445566899999987632 1 23344333333332 2
Q ss_pred cEEEEEcccCCcc-----cccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 584 GKIVVASRTVGAC-----LEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 584 SkIIVTTR~~~va-----~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
-.||-.|-...|. +.-.-...+.++..+-..-.+.++.++-...- ....++ ..|++.+-|.-.
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vdl-~~iAr~tpGfsG 356 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVDL-KKIARGTPGFSG 356 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCCH-HHHhhhCCCccc
Confidence 2233333333342 11122445666666666677777766654111 122222 337777776654
No 309
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.58 E-value=0.22 Score=54.61 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=62.3
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC--cCC---C--CCCcchhhHH
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP--LYC---E--DSEADSDVAE 546 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~--~~~---~--~~~~~~~l~~ 546 (902)
....-++|+|+.|.|||||.+.++.... .....+++.- ......+-..++..... .+. . +..+......
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECC-EEeecchhHHHHHHHhcccccccccccccccccchHHH
Confidence 4457899999999999999999987662 2233334321 11111111122222211 111 0 0001111122
Q ss_pred HHHhhhc-CceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCc
Q 047071 547 KLFHFLN-GKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGA 595 (902)
Q Consensus 547 ~L~~~L~-~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~v 595 (902)
.+...+. ..+-++++|.+...+.+..+...+. .|..||+||.+..+
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 2333332 5788999999987776666644432 46779999986544
No 310
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.56 E-value=3.4 Score=46.31 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=32.5
Q ss_pred eEEecccCHHHHHHHHHHHhcCc--ccCCCCcchHHHHHHHhCCCcchh
Q 047071 604 LIEVETVSKKEAWELFYEQVGRV--IELPHIQPFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 604 ~~~L~~Ls~ees~~LF~~~af~~--~~~~~l~~ia~~Ia~~c~GlPLAL 650 (902)
++++++++.+|+..++.-..-.. ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998776551 111333445566666668888543
No 311
>PRK05439 pantothenate kinase; Provisional
Probab=92.52 E-value=0.48 Score=52.99 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999887644
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.52 E-value=0.16 Score=51.10 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=58.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc--CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY--WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL 552 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~--~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L 552 (902)
.-.+++|.|+.|.|||||.+.++.... ...+.+++.-..- .+..+... +.++.- .+-.......-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHH
Confidence 345899999999999999999987652 3345555532111 11111111 111110 00111222233445556
Q ss_pred cCceeEEEEccchhh---hhhhhhcCCCCC-CCCCcEEEEEcccCCc
Q 047071 553 NGKKFLLLLDDVWEQ---INLQEVGIPDPS-SENVGKIVVASRTVGA 595 (902)
Q Consensus 553 ~~kr~LLVLDDV~d~---~~~~~L~~~l~~-~~~GSkIIVTTR~~~v 595 (902)
-.++-+++||+.... .....+...+.. ...|..||++|.+...
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 677888999986422 112222111111 1235678888877553
No 313
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.51 E-value=0.5 Score=51.87 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=57.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccc--cccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcch----
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKT--KLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADS---- 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~v--r~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~---- 542 (902)
-..++|.|-.|+|||+|+..+.++... +.+-+.++++-+++.. +..++...+...=.... .......
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 357899999999999999998876531 2234678888887664 56777777766422111 1111111
Q ss_pred --hhHHHHHhhh---cCceeEEEEccchhh
Q 047071 543 --DVAEKLFHFL---NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 543 --~l~~~L~~~L---~~kr~LLVLDDV~d~ 567 (902)
...-.+-+++ .++++|+++||+...
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1111233444 268999999998654
No 314
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.50 E-value=0.23 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998765
No 315
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.49 E-value=0.21 Score=53.19 Aligned_cols=130 Identities=19% Similarity=0.154 Sum_probs=70.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccc-------------------cccc--cEEEEe----------eccccC-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKT-------------------KLIF--DVIILV----------TVSRYW----- 518 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~v-------------------r~~F--d~i~WV----------~vs~~~----- 518 (902)
.-.+++|+|++|+|||||...+..-.+. +..| ..+-|| ++.++.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 3458999999999999999888632211 0011 112222 111110
Q ss_pred -------cHHHHHHHHHHhcCcCC------CCCCc-chhhHHHHHhhhcCceeEEEEccch------hhhhhhhhcCCCC
Q 047071 519 -------SVRKIQNDVLRQLPLYC------EDSEA-DSDVAEKLFHFLNGKKFLLLLDDVW------EQINLQEVGIPDP 578 (902)
Q Consensus 519 -------~~~~ll~~Il~~L~~~~------~~~~~-~~~l~~~L~~~L~~kr~LLVLDDV~------d~~~~~~L~~~l~ 578 (902)
...+....+++.++... +..-+ .++..-.+.+.|-..+-+|+.|.-- +......+...+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~- 188 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL- 188 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH-
Confidence 12334455566655432 11112 2334446667788888899999632 222222222211
Q ss_pred CCCCCcEEEEEcccCCcccccCcceeEEe
Q 047071 579 SSENVGKIVVASRTVGACLEMDASKLIEV 607 (902)
Q Consensus 579 ~~~~GSkIIVTTR~~~va~~~~~~~~~~L 607 (902)
....|..||+.|.+..++..+ ...+.+
T Consensus 189 ~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 189 NKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 123477899999999998754 344444
No 316
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.25 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 317
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.41 E-value=0.093 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+.++|.|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999997644
No 318
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.37 E-value=0.59 Score=49.60 Aligned_cols=96 Identities=21% Similarity=0.359 Sum_probs=57.3
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC------CCC
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC------EDS 538 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~------~~~ 538 (902)
.++.|.. ..-..++|.|.+|+|||+|+..+.+... -+.++++.+++. .++.++.+++...-.... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3444433 2235789999999999999999988762 344477777655 457777777755411111 111
Q ss_pred Ccchh------hHHHHHhhh--cCceeEEEEccchh
Q 047071 539 EADSD------VAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 539 ~~~~~------l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
..... ..-.+-+++ +++++|+++||+..
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 11111 111122222 68999999999854
No 319
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.37 E-value=0.49 Score=55.20 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=54.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcchh----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADSD---- 543 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~~---- 543 (902)
.-..++|+|..|+|||||++.+++.. ..+.+++.-+++.. .+.++.+.++..-.... ........
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34689999999999999999998654 22566666666554 45667776655422221 11111111
Q ss_pred --hHHHHHhhh--cCceeEEEEccchhh
Q 047071 544 --VAEKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 544 --l~~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
..-.+-+++ +++++||++||+-.-
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 111123333 589999999998643
No 320
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.27 E-value=0.46 Score=55.28 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=46.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
...+++++|+.|+||||++..++.........+.+.++.... .....+-+..+.+.++.+.....+..++...+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 347999999999999999988765432122223334443322 223344455555555555433333334333222 233
Q ss_pred CceeEEEEccc
Q 047071 554 GKKFLLLLDDV 564 (902)
Q Consensus 554 ~kr~LLVLDDV 564 (902)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 34666655
No 321
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.25 E-value=0.49 Score=55.36 Aligned_cols=89 Identities=27% Similarity=0.339 Sum_probs=49.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcch------hh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADS------DV 544 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~------~l 544 (902)
-..++|+|..|+|||||++.++.... ...+++++.-.+..++.++....+....... ....... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35899999999999999999876542 2234444433334455555444444321111 1111111 11
Q ss_pred HHHHHhhh--cCceeEEEEccchhh
Q 047071 545 AEKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 545 ~~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
.-.+-+++ +++.+||++||+-..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 11222333 489999999998643
No 322
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.24 E-value=0.41 Score=59.49 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=36.9
Q ss_pred CccccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 454 LFVSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++|+...+..+.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34679999888888776643 334468899999999999999998754
No 323
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.21 E-value=0.25 Score=49.71 Aligned_cols=44 Identities=34% Similarity=0.411 Sum_probs=33.0
Q ss_pred EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcC
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLY 534 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~ 534 (902)
+|.|-|++|.||||+|+.++++.- -.| + +.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--Cce-----e------eccHHHHHHHHHcCCC
Confidence 689999999999999999988772 111 1 3346778888877654
No 324
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.17 E-value=0.5 Score=51.37 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=35.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
-.++.|.|.+|+||||++.+++.... ..+-..++|+++..+ ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 35888999999999999999876652 221346788876553 44555555443
No 325
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.16 E-value=0.18 Score=59.39 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++||+..++.+...+..++ -|.|.|++|+|||+||+.+....
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 46999999999999887543 67899999999999999998754
No 326
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.12 E-value=0.24 Score=56.22 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=60.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
.-..+.|.|+.|.||||+...+.+.. .......++. +.++... .... ...+..+.....+.......++..|+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i--~~~~~~~i~t-iEdp~E~--~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI--NKNAAGHIIT-IEDPIEY--VHRN-KRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh--CcCCCCEEEE-EcCChhh--hccC-ccceEEccccCCCCcCHHHHHHHhhcc
Confidence 34789999999999999999887654 2233333332 2222111 0000 000000111111234566677888888
Q ss_pred ceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEccc
Q 047071 555 KKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRT 592 (902)
Q Consensus 555 kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~ 592 (902)
.+=.|++|.+.+.+.+...... ...|-.|+.|...
T Consensus 195 ~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha 229 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTA---AETGHLVFGTLHT 229 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcC
Confidence 9999999999887766543222 2234445555543
No 327
>PRK03839 putative kinase; Provisional
Probab=92.12 E-value=0.098 Score=53.34 Aligned_cols=23 Identities=48% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|+|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 328
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=92.09 E-value=0.13 Score=60.62 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=43.8
Q ss_pred CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 831 SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
++..-.+++.|+|.+|.|..+-.. ..|.+|-+|.|+ .+.++.||.-.|.+|++|+.|||..++|+
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-rNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS-RNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecc-cCcccccCHHHhhhcchhhhhhcccccee
Confidence 444445677777777766665544 566677777777 55677777765666888888887777554
No 329
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.06 E-value=0.43 Score=50.91 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=52.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-------------------
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC------------------- 535 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~------------------- 535 (902)
.-.++.|+|.+|+|||+|+.++.... ...=..++|++..+. +.++.+++ .+++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45789999999999999999985443 122356788877654 34444443 2222111
Q ss_pred -CCCCcchhhHHHHHhhhcC-ceeEEEEccch
Q 047071 536 -EDSEADSDVAEKLFHFLNG-KKFLLLLDDVW 565 (902)
Q Consensus 536 -~~~~~~~~l~~~L~~~L~~-kr~LLVLDDV~ 565 (902)
....+.+.+...+.+.+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0011234555566665543 55689999875
No 330
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.06 E-value=0.23 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34589999999999999999998754
No 331
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.05 E-value=0.11 Score=44.69 Aligned_cols=23 Identities=48% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997763
No 332
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.04 E-value=0.17 Score=57.55 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=43.8
Q ss_pred cccCCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 450 HEFGLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 450 ~~~~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+++..+||-+..+..|+..+.++.+.-|.|.|..|+||||+|+.+++..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 356677789999999999998888888878899999999999999997543
No 333
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.04 E-value=0.21 Score=61.01 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=57.2
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCc
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
...++|.+..++.|...+... +.+.++|++|+||||+|+.+.+... ...++..+|+.. ...+...+++.++.+++.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 345689988888888777654 4788999999999999999987753 445677788765 344677777777766654
No 334
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.01 E-value=0.25 Score=52.28 Aligned_cols=27 Identities=48% Similarity=0.434 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.+.+|+|.|.+|.||||+|+.+++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987763
No 335
>PTZ00035 Rad51 protein; Provisional
Probab=92.01 E-value=0.84 Score=51.75 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=37.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccc----cccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKT----KLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~v----r~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
.-.++.|+|.+|+|||+|+..++-.... ...-..++|++....+++.++ .++++.+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 3578999999999999999988744321 011235679987777776663 3444444
No 336
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.97 E-value=0.59 Score=51.25 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=53.6
Q ss_pred ceEEEEecCCCCChhhHH-HHHhhcccccccccEE-EEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcchh---
Q 047071 476 AGKIGIHGISGIGKTTVL-KALISYPKTKLIFDVI-ILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADSD--- 543 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd~i-~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~~--- 543 (902)
-.-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+++.. .+.++.+.+...-.... ........
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 5665543 22333 556666553 56677777765322111 11111111
Q ss_pred ---hHHHHHhhh--cCceeEEEEccchhh-hhhhhh
Q 047071 544 ---VAEKLFHFL--NGKKFLLLLDDVWEQ-INLQEV 573 (902)
Q Consensus 544 ---l~~~L~~~L--~~kr~LLVLDDV~d~-~~~~~L 573 (902)
..-.+-+++ +++.+||++||+..- ..+.++
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 011222333 578999999999654 334444
No 337
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.91 E-value=0.37 Score=54.30 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 455 FVSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+.++|+...+.++.+.+.. ....-|.|+|..|+||+++|+.++..-
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 4578998888888887754 233457799999999999999997543
No 338
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.85 E-value=0.34 Score=47.84 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998765
No 339
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.79 E-value=0.18 Score=51.81 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998774
No 340
>PTZ00301 uridine kinase; Provisional
Probab=91.79 E-value=0.13 Score=54.35 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3689999999999999999886554
No 341
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=1.7 Score=46.63 Aligned_cols=145 Identities=13% Similarity=0.170 Sum_probs=80.7
Q ss_pred chHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHH
Q 047071 459 STERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQN 525 (902)
Q Consensus 459 GRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~ 525 (902)
|-+..+.+|...+.- .+++-+.++|++|.|||-||+.|+++- ++.|+.++.. ++.+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elvq 219 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELVQ 219 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHHH
Confidence 456666666665521 356778899999999999999997665 3455666653 1211
Q ss_pred HHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhh------------hh----hhhhcCCCCC--CCCCcEE
Q 047071 526 DVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQ------------IN----LQEVGIPDPS--SENVGKI 586 (902)
Q Consensus 526 ~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~------------~~----~~~L~~~l~~--~~~GSkI 586 (902)
..+. ....+...+.-.. ...+.+|..|.+++. .+ .-.++..+.. ..++-+|
T Consensus 220 k~ig----------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 220 KYIG----------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred HHhh----------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEE
Confidence 1111 1112222222211 345778888877642 01 1122222322 2345678
Q ss_pred EEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhc
Q 047071 587 VVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 587 IVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
|..|..-.+.. .-.....++..+.+++.-.++++-+..
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 87776544432 112345677777777777777765543
No 342
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.74 E-value=0.61 Score=47.72 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=27.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccc--------cEEEEeecccc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIF--------DVIILVTVSRY 517 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F--------d~i~WV~vs~~ 517 (902)
.++.|.|++|+||||++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999998887655432222 36788876655
No 343
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.71 E-value=0.56 Score=55.09 Aligned_cols=90 Identities=20% Similarity=0.334 Sum_probs=55.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcch------
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADS------ 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~------ 542 (902)
-..++|.|.+|+|||||+.++....... +=+.++++-+++.. .+.+++++++..-.... .......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999876554311 11456677676554 57777777776422211 1111111
Q ss_pred hhHHHHHhhh---cCceeEEEEccchh
Q 047071 543 DVAEKLFHFL---NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 ~l~~~L~~~L---~~kr~LLVLDDV~d 566 (902)
...-.+-+++ +++++||++|++-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1112234444 67999999999854
No 344
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.70 E-value=0.11 Score=53.89 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 345
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.65 E-value=0.14 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....|.|+|++|+||||+|+.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.62 E-value=0.96 Score=50.90 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=24.2
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
....+++++|++|+||||++..++....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3568999999999999999999987664
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.61 E-value=0.28 Score=53.15 Aligned_cols=62 Identities=24% Similarity=0.268 Sum_probs=36.4
Q ss_pred HHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHH
Q 047071 464 VLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQN 525 (902)
Q Consensus 464 le~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~ 525 (902)
..++++.|.. .+..+|+|.|++|+|||||...+....+-+.+=-.++=|+-+.+++--.++.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 3445555533 4678999999999999999999887765433334455555566665444443
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.60 E-value=0.11 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999997755
No 349
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.57 E-value=0.37 Score=59.96 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=55.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-+++-|.|++|+|||||+.+++... ...-..++|++....+++. .+++++... ....+.+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35788999999999999998865543 2223557899877776642 555555432 22234455555555
Q ss_pred hhhc-CceeEEEEccch
Q 047071 550 HFLN-GKKFLLLLDDVW 565 (902)
Q Consensus 550 ~~L~-~kr~LLVLDDV~ 565 (902)
..++ ++--|||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5554 456689999975
No 350
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=91.56 E-value=0.36 Score=54.21 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=50.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLFH 550 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~~ 550 (902)
-+++-|+|+.|+||||||.++.... +..-..++|++....+++. .++.++... ..+...++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~--q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA--QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh--hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4699999999999999999987655 3344668899887776653 333333322 122244555555555
Q ss_pred hhcC-ceeEEEEccchh
Q 047071 551 FLNG-KKFLLLLDDVWE 566 (902)
Q Consensus 551 ~L~~-kr~LLVLDDV~d 566 (902)
.++. .--++|+|.|..
T Consensus 126 lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHTTSESEEEEE-CTT
T ss_pred HhhcccccEEEEecCcc
Confidence 5543 445899998854
No 351
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.53 E-value=0.019 Score=56.15 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=62.7
Q ss_pred eccCCCCCCCC-C-cccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 820 LRAGAGLTEPP-S-LKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 820 ~~~~~~l~~lp-~-l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
...+.+++.+| . ...+..+..|+|.+|.+..+|.. ..++.||.|+++ .+.+...|.- |-.|.+|-+||..++.+.
T Consensus 59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~-~N~l~~~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR-FNPLNAEPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred ecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc-cCccccchHH-HHHHHhHHHhcCCCCccc
Confidence 34555677776 2 24455788899999999999987 888999999999 6778899998 777999999999888887
Q ss_pred cCCC
Q 047071 897 CLPN 900 (902)
Q Consensus 897 ~LP~ 900 (902)
++|-
T Consensus 137 eid~ 140 (177)
T KOG4579|consen 137 EIDV 140 (177)
T ss_pred cCcH
Confidence 7773
No 352
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.52 E-value=0.29 Score=48.60 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997654
No 353
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=91.50 E-value=0.13 Score=53.92 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhccc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
..+|+|-||-|+||||||+.+.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999988774
No 354
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.48 E-value=0.2 Score=49.66 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=26.2
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
+-|.|.|.+|+|||||+.+++... . .-|+++++-..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~----~---~~~i~isd~vk 43 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT----G---LEYIEISDLVK 43 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh----C---CceEehhhHHh
Confidence 457899999999999999997543 2 23566665433
No 355
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.46 E-value=0.35 Score=52.65 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR 516 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~ 516 (902)
.-.++.|.|++|+|||+||.+++.... ..=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 346899999999999999999765431 2234677887754
No 356
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.45 E-value=0.51 Score=54.19 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=48.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCC-----CCCcchhhHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCE-----DSEADSDVAEKLFH 550 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~-----~~~~~~~l~~~L~~ 550 (902)
-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++. .-+..++.... ...+.+.+...+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 46899999999999999999987653 22346778765433 23322 22334443221 1112233322221
Q ss_pred hhcCceeEEEEccchh
Q 047071 551 FLNGKKFLLLLDDVWE 566 (902)
Q Consensus 551 ~L~~kr~LLVLDDV~d 566 (902)
..+.-+||+|.+..
T Consensus 156 --~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 --ELKPDLVIIDSIQT 169 (372)
T ss_pred --hcCCcEEEEcchHH
Confidence 34667899998753
No 357
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.45 E-value=0.038 Score=54.19 Aligned_cols=65 Identities=26% Similarity=0.315 Sum_probs=58.4
Q ss_pred ccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 835 WEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
.-+|...+|++|.++..|.. .+.+-+..|+|. .+.|..+|.+ +..++.|+.|+++.+.|..+|.-
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccCccccchHH
Confidence 44688899999999999987 777799999999 7889999999 99999999999999999888863
No 358
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.42 E-value=0.14 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.4
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++.|+|+.|+|||||++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999997765
No 359
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.37 E-value=0.54 Score=48.13 Aligned_cols=118 Identities=15% Similarity=0.057 Sum_probs=58.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEE--EEeeccccCcHHHHHHHHHHh---cCcCCC-CCCcc-------h
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVI--ILVTVSRYWSVRKIQNDVLRQ---LPLYCE-DSEAD-------S 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i--~WV~vs~~~~~~~ll~~Il~~---L~~~~~-~~~~~-------~ 542 (902)
...|-|++..|.||||.|..++-... ...+... =|+.-........++..+.-. .+.... ...+. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 35788888899999999977764442 2222221 133333223344444433000 011000 00011 1
Q ss_pred hhHHHHHhhhcC-ceeEEEEccchhhhh-----hhhhcCCCCCCCCCcEEEEEcccCC
Q 047071 543 DVAEKLFHFLNG-KKFLLLLDDVWEQIN-----LQEVGIPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 543 ~l~~~L~~~L~~-kr~LLVLDDV~d~~~-----~~~L~~~l~~~~~GSkIIVTTR~~~ 594 (902)
+.....++.+.. +--|||||.+...-. .+.+...+.....+.-||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 122333344444 445999999864321 2233333334455678999999863
No 360
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.35 E-value=0.37 Score=47.98 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=58.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGK 555 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~k 555 (902)
-.+++|+|..|.|||||++.++.... .....+++.-....... .......+..-.. -.......-.+...+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLP--LEELRRRIGYVPQ-LSGGQRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCC--HHHHHhceEEEee-CCHHHHHHHHHHHHHhcC
Confidence 36899999999999999999987652 34455555432111100 0111111111000 111222223355556667
Q ss_pred eeEEEEccchh---h---hhhhhhcCCCCCCCCCcEEEEEcccCCccc
Q 047071 556 KFLLLLDDVWE---Q---INLQEVGIPDPSSENVGKIVVASRTVGACL 597 (902)
Q Consensus 556 r~LLVLDDV~d---~---~~~~~L~~~l~~~~~GSkIIVTTR~~~va~ 597 (902)
+-+++||.... . ..+..+...+.. .+..+|++|.+.....
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~ 144 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAE--EGRTVIIVTHDPELAE 144 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHH
Confidence 88999998642 2 222222222221 2456888887655433
No 361
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.29 E-value=0.77 Score=52.73 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=50.4
Q ss_pred CceEEEEecCCCCChhh-HHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh
Q 047071 475 EAGKIGIHGISGIGKTT-VLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL 552 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTT-LA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L 552 (902)
+-++|.++|+.|||||| ||+..+.... ...=..+..++.... ....+-++..++-++.+.....+..++...+. .+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~-~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE-AL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH-Hh
Confidence 37899999999999975 6655544331 122234566655443 34556666667777776644445555554443 23
Q ss_pred cCceeEEEEccc
Q 047071 553 NGKKFLLLLDDV 564 (902)
Q Consensus 553 ~~kr~LLVLDDV 564 (902)
++. =+|.+|-+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34445644
No 362
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.24 E-value=0.12 Score=48.41 Aligned_cols=22 Identities=45% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|-|+|.+|+|||+||+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987665
No 363
>PRK08149 ATP synthase SpaL; Validated
Probab=91.22 E-value=0.82 Score=53.34 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=52.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCC------CCCCcch-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYC------EDSEADS----- 542 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~------~~~~~~~----- 542 (902)
.-..++|+|..|+|||||+..+++... -+.+++..+.. ..++.++...++....... .......
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 345889999999999999999987552 23334444433 3356666677766433221 1111111
Q ss_pred -hhHHHHHhhh--cCceeEEEEccchh
Q 047071 543 -DVAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 -~l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
.....+-+++ +++++||++||+-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1111223333 58999999999854
No 364
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.20 E-value=0.44 Score=48.60 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=46.9
Q ss_pred EEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC--ce
Q 047071 479 IGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG--KK 556 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~--kr 556 (902)
+.|.|.+|+|||++|.++... .....+++.-...++. +....|.+..... +..+...+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 678999999999999998754 2235667766666644 3444433322111 2223333444445555532 24
Q ss_pred eEEEEccch
Q 047071 557 FLLLLDDVW 565 (902)
Q Consensus 557 ~LLVLDDV~ 565 (902)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 479999873
No 365
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.19 E-value=0.26 Score=50.48 Aligned_cols=36 Identities=33% Similarity=0.298 Sum_probs=29.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEee
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVT 513 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~ 513 (902)
.++|.|+|+.|+|||||++.+.... ...|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~--~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF--PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS--TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc--ccccccceeec
Confidence 4789999999999999999998876 56775555544
No 366
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.16 E-value=0.21 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999997765
No 367
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.14 E-value=0.098 Score=64.62 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=28.5
Q ss_pred cccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeC--hhhhcCCCCccEEEeeCC
Q 047071 834 EWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIP--MSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 834 ~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP--~sfIg~L~~Lr~LdLs~c 893 (902)
++++|+.||++++++..|-..+.|+||++|.++ +-.+..-+ .. +.+|++|++||+|..
T Consensus 171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mr-nLe~e~~~~l~~-LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMR-NLEFESYQDLID-LFNLKKLRVLDISRD 230 (699)
T ss_pred ccCccceeecCCCCccCcHHHhccccHHHHhcc-CCCCCchhhHHH-HhcccCCCeeecccc
Confidence 344556666666665555444555555555555 22222111 12 445555555555554
No 368
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=91.14 E-value=2.7 Score=46.88 Aligned_cols=164 Identities=7% Similarity=0.076 Sum_probs=88.6
Q ss_pred HHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhccc--------cc-ccccEEEEeec-cccCcHHHHHHHHHHhcCc
Q 047071 465 LKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPK--------TK-LIFDVIILVTV-SRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 465 e~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~--------vr-~~Fd~i~WV~v-s~~~~~~~ll~~Il~~L~~ 533 (902)
+.+.+.+.++. ..+..++|..|+||+++|..+.+..- .. ..++. .++.. +....+.++. ++.+.+..
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~-~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANI-ILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcce-EEeccCCCcCCHHHHH-HHHHHhcc
Confidence 44555555544 45677999999999999988865531 11 12222 22221 1112222221 22222211
Q ss_pred CCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh--hhhhcCCCCCCCCCcEEEEEccc-CCcccc-cCcceeEEecc
Q 047071 534 YCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN--LQEVGIPDPSSENVGKIVVASRT-VGACLE-MDASKLIEVET 609 (902)
Q Consensus 534 ~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~--~~~L~~~l~~~~~GSkIIVTTR~-~~va~~-~~~~~~~~L~~ 609 (902)
.. .-.+.+-++|+|+++.... ...+...+.....++.+|++|.+ ..+... ......+++.+
T Consensus 84 ~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 10 0114677889999876533 45555555555566667665543 444322 33467899999
Q ss_pred cCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 610 VSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 610 Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
+++++....+... + ...+.+..++...+|.=-|+..
T Consensus 149 l~~~~l~~~l~~~-~------~~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSK-N------KEKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHc-C------CChhHHHHHHHHcCCHHHHHHH
Confidence 9999988777653 1 1123455666666652234444
No 369
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.11 E-value=0.2 Score=50.43 Aligned_cols=35 Identities=31% Similarity=0.198 Sum_probs=26.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
..+|-|.|.+|.||||||+.+.+... ..-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEe
Confidence 35899999999999999999987773 333344454
No 370
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.11 E-value=0.4 Score=51.51 Aligned_cols=90 Identities=22% Similarity=0.221 Sum_probs=51.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccc----------------------cccccEEEEeeccccC------------cH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKT----------------------KLIFDVIILVTVSRYW------------SV 520 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~v----------------------r~~Fd~i~WV~vs~~~------------~~ 520 (902)
.--.|+|+|++|+|||||.+.++.-... -+.+..--|.++-++. ..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 3458999999999999999999742211 1111222355543332 12
Q ss_pred HHHHHHHHHhcCcCC-----CCCCcch-hhHHHHHhhhcCceeEEEEccc
Q 047071 521 RKIQNDVLRQLPLYC-----EDSEADS-DVAEKLFHFLNGKKFLLLLDDV 564 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~-----~~~~~~~-~l~~~L~~~L~~kr~LLVLDDV 564 (902)
.+....+++.++... +..-+.. ...-.+.+.|..++-+|.+|.-
T Consensus 108 ~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred HHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 345666777766544 1111222 2223455667777788888863
No 371
>PRK04040 adenylate kinase; Provisional
Probab=91.11 E-value=0.16 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|+|++|+||||+++.+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999997765
No 372
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.11 E-value=0.4 Score=49.26 Aligned_cols=26 Identities=46% Similarity=0.562 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999998754
No 373
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.07 E-value=0.83 Score=53.42 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=53.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcchh----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADSD---- 543 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~~---- 543 (902)
.-..++|+|..|+|||||++.+++... .+.++++-++... .+.++..+.+..-+... ........
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 446889999999999999999987652 2455566665554 45566655554422111 11111111
Q ss_pred --hHHHHHhhh--cCceeEEEEccchh
Q 047071 544 --VAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 544 --l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
..-.+-+++ .++++||++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 111223333 58999999999854
No 374
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.99 E-value=0.26 Score=52.17 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=51.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccccccc-ccEEEEeeccccCcHHHHHHHHHHhcCcCC---------------CC-
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLI-FDVIILVTVSRYWSVRKIQNDVLRQLPLYC---------------ED- 537 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~-Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~---------------~~- 537 (902)
.-.++.|.|.+|+|||+|+.++.... ... =..++|++...+. .++.+.+- .++... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 45799999999999999999876443 122 3456788765543 33333322 332110 00
Q ss_pred ----CCcchhhHHHHHhhhcC-ceeEEEEccchhh
Q 047071 538 ----SEADSDVAEKLFHFLNG-KKFLLLLDDVWEQ 567 (902)
Q Consensus 538 ----~~~~~~l~~~L~~~L~~-kr~LLVLDDV~d~ 567 (902)
..+.+.+...+.+.++. +...+|+|.+...
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 23556666666666654 4578999987543
No 375
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.96 E-value=0.16 Score=51.52 Aligned_cols=24 Identities=46% Similarity=0.563 Sum_probs=21.5
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++|+|+|+.|+|||||++.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998754
No 376
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.95 E-value=0.18 Score=47.16 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.1
Q ss_pred EEEecCCCCChhhHHHHHhhccc
Q 047071 479 IGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
|.|+|..|+|||||.+.+++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987663
No 377
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=0.6 Score=53.44 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=54.5
Q ss_pred HHHHHhhcCC--CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CC
Q 047071 465 LKILQCISGV--EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----ED 537 (902)
Q Consensus 465 e~L~~~L~~~--~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~ 537 (902)
.++-..|-.+ .-.+|.|-|-+|||||||..+++.+..-+ - .++||+-.+... ++ +--+..++... ..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~-~vLYVsGEES~~--Qi-klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR--G-KVLYVSGEESLQ--QI-KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc--C-cEEEEeCCcCHH--HH-HHHHHHhCCCccceEEeh
Confidence 3444444332 23689999999999999999998887422 2 677876544432 22 22233444322 11
Q ss_pred CCcchhhHHHHHhhhcCceeEEEEccch
Q 047071 538 SEADSDVAEKLFHFLNGKKFLLLLDDVW 565 (902)
Q Consensus 538 ~~~~~~l~~~L~~~L~~kr~LLVLDDV~ 565 (902)
..+.++....+. ..++-|+|+|-+.
T Consensus 154 Et~~e~I~~~l~---~~~p~lvVIDSIQ 178 (456)
T COG1066 154 ETNLEDIIAELE---QEKPDLVVIDSIQ 178 (456)
T ss_pred hcCHHHHHHHHH---hcCCCEEEEeccc
Confidence 223333333333 3678899999874
No 378
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.87 E-value=0.31 Score=47.81 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.-.+|.+.|.-|.|||||++.+++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999987764
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.84 E-value=0.61 Score=55.93 Aligned_cols=128 Identities=21% Similarity=0.115 Sum_probs=66.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccccc------ccccEEEEeeccc---------------cC-c-HHHHHHHHHHhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTK------LIFDVIILVTVSR---------------YW-S-VRKIQNDVLRQL 531 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr------~~Fd~i~WV~vs~---------------~~-~-~~~ll~~Il~~L 531 (902)
.-..|+|+|+.|+|||||.+.+.....-. ..--.+.|+.-.. .+ + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 34579999999999999999995433110 0101122222111 01 1 134444555554
Q ss_pred CcCCC------CCCcchhhH-HHHHhhhcCceeEEEEccch------hhhhhhhhcCCCCCCCCCcEEEEEcccCCcccc
Q 047071 532 PLYCE------DSEADSDVA-EKLFHFLNGKKFLLLLDDVW------EQINLQEVGIPDPSSENVGKIVVASRTVGACLE 598 (902)
Q Consensus 532 ~~~~~------~~~~~~~l~-~~L~~~L~~kr~LLVLDDV~------d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~ 598 (902)
+-... ..-+..+.. -.+-..+..++-+||||.-- ..+.++.....+ +|+ ||+.|.++.....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~~ 501 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLDR 501 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHHh
Confidence 43321 011222222 23344556788999999543 334444443333 233 8888888776654
Q ss_pred cCcceeEEec
Q 047071 599 MDASKLIEVE 608 (902)
Q Consensus 599 ~~~~~~~~L~ 608 (902)
.. ..++.+.
T Consensus 502 va-~~i~~~~ 510 (530)
T COG0488 502 VA-TRIWLVE 510 (530)
T ss_pred hc-ceEEEEc
Confidence 43 3445444
No 380
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.84 E-value=0.31 Score=50.73 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 464 VLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 464 le~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+.+...+.... +..|+|++|.||||++..+....
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344444554332 78999999999997666655443
No 381
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.83 E-value=0.82 Score=53.25 Aligned_cols=89 Identities=29% Similarity=0.373 Sum_probs=51.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC------CCCCcch-h----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC------EDSEADS-D---- 543 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~------~~~~~~~-~---- 543 (902)
.-..++|+|..|+|||||++.++.... ....++.+.-.+.-.+.++.+..+..-.... ....... .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 345899999999999999999987652 2223333333334456666666554422211 1111111 1
Q ss_pred -hHHHHHhhh--cCceeEEEEccchh
Q 047071 544 -VAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 544 -l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
..-.+-+++ +++++||++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111233344 57899999999854
No 382
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.82 E-value=0.23 Score=49.06 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=27.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR 516 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~ 516 (902)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999998874 34555555554444
No 383
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.79 E-value=0.77 Score=53.81 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=56.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcch------
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADS------ 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~------ 542 (902)
-..++|.|.+|+|||+|+.++..... +.+-+.++|+-++... .+.++.+++...-.... .......
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35789999999999999999877643 2334678888776654 46667777665321111 1111111
Q ss_pred hhHHHHHhhh---cCceeEEEEccchh
Q 047071 543 DVAEKLFHFL---NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 ~l~~~L~~~L---~~kr~LLVLDDV~d 566 (902)
...-.+-+++ +++++||++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1112233444 36899999999854
No 384
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=90.78 E-value=0.52 Score=56.75 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=37.6
Q ss_pred CCccccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 453 GLFVSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....++|....+.++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345679999988888887753 233456799999999999999998754
No 385
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=3.1 Score=45.86 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=59.4
Q ss_pred CccccchHHHHHHHHHhhcC------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHH
Q 047071 454 LFVSRSTERTVLKILQCISG------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVR 521 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~ 521 (902)
-.++-|.+..++.|.....- ..-+-|.++|++|.||+.||++|+-... . -|++++..
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS---- 200 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS---- 200 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----
Confidence 34567889888888876521 2357899999999999999999986652 2 23344432
Q ss_pred HHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchh
Q 047071 522 KIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWE 566 (902)
Q Consensus 522 ~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d 566 (902)
++....+ . ..+.++..|.+.- .+++.+|.+|.++.
T Consensus 201 DLvSKWm----G------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 DLVSKWM----G------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHHh----c------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 2222211 1 2344555555544 46889999999874
No 386
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=90.72 E-value=0.55 Score=53.04 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 458 RSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 458 VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
||+...+.++.+.+.. ....-|.|+|..|+||+++|+.+++.-
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 5666666666666643 233457899999999999999997644
No 387
>PRK04328 hypothetical protein; Provisional
Probab=90.71 E-value=0.63 Score=50.36 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=30.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
.-.++.|.|.+|.|||+||.++.... ...-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 45789999999999999999876543 122355678876553
No 388
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.69 E-value=0.57 Score=51.23 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCC
Q 047071 458 RSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCED 537 (902)
Q Consensus 458 VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~ 537 (902)
.|...+..+.+..+....-.++.|.|+.|.||||++..+.+... ..-..++.+.-........ ..++....
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~~~~-----~~q~~v~~-- 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQIPG-----INQVQVNE-- 132 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceecCCC-----ceEEEeCC--
Confidence 44443333333333334456899999999999999998765441 1111233332221111110 01111111
Q ss_pred CCcchhhHHHHHhhhcCceeEEEEccchhhhhhhhh
Q 047071 538 SEADSDVAEKLFHFLNGKKFLLLLDDVWEQINLQEV 573 (902)
Q Consensus 538 ~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L 573 (902)
.........++..|+..+-.|+++.+.+.+....+
T Consensus 133 -~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 133 -KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred -cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 11224566777788888999999999888764443
No 389
>PRK05922 type III secretion system ATPase; Validated
Probab=90.62 E-value=1.1 Score=52.24 Aligned_cols=88 Identities=17% Similarity=0.314 Sum_probs=49.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCC------CCCCcch-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYC------EDSEADS----- 542 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~------~~~~~~~----- 542 (902)
.-..++|+|..|+|||||.+.+++... .+...++.++. ...+.+.+.+......... .......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345799999999999999999987542 23333333333 2334455555554332221 1111111
Q ss_pred -hhHHHHHhhh--cCceeEEEEccchh
Q 047071 543 -DVAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 -~l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
...-.+-+++ +++++||++||+-.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1111233333 47999999999854
No 390
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=90.62 E-value=0.088 Score=59.48 Aligned_cols=67 Identities=22% Similarity=0.409 Sum_probs=56.1
Q ss_pred cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
|..+++||.|+|++|.+..+-+. ..+..|+.|.|. -..|..+...+|.+|..|++|+|.+++|+.+-
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~-~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT-RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC-cchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 77888999999999998887766 778888888888 56688888888889999999999998887553
No 391
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=90.60 E-value=0.28 Score=55.52 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=38.8
Q ss_pred cCCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 452 FGLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++...++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4456679999999988866654555668899999999999999986543
No 392
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.58 E-value=0.3 Score=53.70 Aligned_cols=63 Identities=25% Similarity=0.292 Sum_probs=44.2
Q ss_pred HHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHH
Q 047071 465 LKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 465 e~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
.+|+..|.. ++..+|+|.|.+|+|||||...+-.....+.+=-.++=|+-|.+++--.++.+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 345555532 577899999999999999999887776545554556666667777655555443
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.53 E-value=1.2 Score=47.16 Aligned_cols=41 Identities=22% Similarity=0.111 Sum_probs=29.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
.-.++.|.|.+|.||||||.+++...- ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 457899999999999999998764331 22346788876443
No 394
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=90.52 E-value=0.68 Score=54.48 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=54.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhccccc---ccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcc-h---
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTK---LIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEAD-S--- 542 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr---~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~-~--- 542 (902)
.-++|.|..|+|||||+..+.+..... ..| .++++-+++.. .+.+++..++..=.... ...... .
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~-v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEF-AVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCce-EEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 578999999999999999998865432 122 55666666554 56777777765422211 111111 1
Q ss_pred --hhHHHHHhhhc---CceeEEEEccchh
Q 047071 543 --DVAEKLFHFLN---GKKFLLLLDDVWE 566 (902)
Q Consensus 543 --~l~~~L~~~L~---~kr~LLVLDDV~d 566 (902)
-....+-++++ ++++||++||+..
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 11112344444 7899999999864
No 395
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=90.50 E-value=0.7 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.7
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|+|+|..|+|||||.+.+....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999998763
No 396
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=90.47 E-value=1.1 Score=50.45 Aligned_cols=88 Identities=26% Similarity=0.371 Sum_probs=50.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecc-ccCcHHHHHHHHHHhcCcCC------CCCCcch-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVS-RYWSVRKIQNDVLRQLPLYC------EDSEADS----- 542 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs-~~~~~~~ll~~Il~~L~~~~------~~~~~~~----- 542 (902)
.-..++|+|..|.|||||.+.+++... -+...+.-+. +..++.++....+..-.... .......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 345789999999999999999987653 1233334343 33456666666655432211 1111111
Q ss_pred -hhHHHHHhhh--cCceeEEEEccchh
Q 047071 543 -DVAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 -~l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
...-.+-+++ +++.+||++||+-.
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1111222333 58999999999854
No 397
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=90.45 E-value=0.56 Score=57.34 Aligned_cols=77 Identities=14% Similarity=0.017 Sum_probs=52.0
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
....++|.+..++.+...+.... -+.++|++|+||||+|+.+.+... ...|...+++... ..+...+++.++..++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 34556899988888877776543 555999999999999999987764 2333334444322 2345566777776665
Q ss_pred c
Q 047071 533 L 533 (902)
Q Consensus 533 ~ 533 (902)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 398
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=90.45 E-value=0.56 Score=54.37 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHhhcC--------------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG--------------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~--------------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..+..+.-.+.. -.++-|.++|++|+|||+||+.++...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457888777777655432 124678999999999999999998776
No 399
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.45 E-value=0.19 Score=51.12 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.5
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999997654
No 400
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.44 E-value=0.23 Score=52.03 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=27.1
Q ss_pred HhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 469 QCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 469 ~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+.+...++++|+++|..|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455789999999999999999999998764
No 401
>PRK06217 hypothetical protein; Validated
Probab=90.44 E-value=0.18 Score=51.72 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhhHHHHHhhccc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.|.|.|.+|+||||||+.+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987763
No 402
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.44 E-value=1 Score=52.65 Aligned_cols=88 Identities=28% Similarity=0.430 Sum_probs=53.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcchhh---
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADSDV--- 544 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~~l--- 544 (902)
.-..++|.|..|+|||||.+.+++... -+.+++.-+++.. .+.++.+..+..-+... .........
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446899999999999999999988663 2566777676654 45566655444321111 111111110
Q ss_pred ---HHHHHhhh--cCceeEEEEccchh
Q 047071 545 ---AEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 545 ---~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
.-.+-+++ .++++||++||+..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11123333 58999999999854
No 403
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.42 E-value=0.72 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-..++|+|+.|.|||||++.+....
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997544
No 404
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.42 E-value=0.17 Score=49.75 Aligned_cols=23 Identities=48% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47889999999999999997654
No 405
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=90.39 E-value=0.56 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.0
Q ss_pred EEEecCCCCChhhHHHHHhhccc
Q 047071 479 IGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
+.+.|++|.||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999987663
No 406
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.36 E-value=0.18 Score=48.97 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|.|+.|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 407
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.33 E-value=0.36 Score=48.89 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 463 TVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 463 ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+++|.+.|.+ +++.++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45677777754 799999999999999999997765
No 408
>PRK00625 shikimate kinase; Provisional
Probab=90.25 E-value=0.19 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|+||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997765
No 409
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.10 E-value=0.22 Score=51.76 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|+.|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 410
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.07 E-value=0.19 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997764
No 411
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=90.07 E-value=0.21 Score=54.83 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=19.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhccc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
+.|.|.|.+|+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4788999999999999999977653
No 412
>PRK13947 shikimate kinase; Provisional
Probab=89.91 E-value=0.22 Score=50.10 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 413
>PRK09099 type III secretion system ATPase; Provisional
Probab=89.79 E-value=0.92 Score=53.16 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=51.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC------CCCCc-chh----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC------EDSEA-DSD---- 543 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~------~~~~~-~~~---- 543 (902)
.-..++|.|..|+|||||++.++..... -..+++..-.+...+.++.+.+...-.... ..... ...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999999876532 123444433344456666666655422111 11111 111
Q ss_pred -hHHHHHhhh--cCceeEEEEccchh
Q 047071 544 -VAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 544 -l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
..-.+-+++ +++++||++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111223333 47899999999854
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.73 E-value=0.21 Score=51.24 Aligned_cols=23 Identities=48% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 415
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=89.72 E-value=0.23 Score=50.57 Aligned_cols=20 Identities=55% Similarity=0.708 Sum_probs=18.6
Q ss_pred EEEEecCCCCChhhHHHHHh
Q 047071 478 KIGIHGISGIGKTTVLKALI 497 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy 497 (902)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999985
No 416
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=89.69 E-value=1.1 Score=52.28 Aligned_cols=88 Identities=28% Similarity=0.411 Sum_probs=50.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCC------CCCCc-chhh--
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYC------EDSEA-DSDV-- 544 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~------~~~~~-~~~l-- 544 (902)
.-..++|+|..|+|||||++.+++... .+...+..++. ...+.+++.+....=.... ..... ....
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 446899999999999999999987552 33445554444 3445566666543211111 11111 1111
Q ss_pred ---HHHHHhhh--cCceeEEEEccchh
Q 047071 545 ---AEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 545 ---~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
.-.+-+++ +++++||++||+..
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 11223333 47899999999864
No 417
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.68 E-value=0.2 Score=34.49 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=16.1
Q ss_pred CCCccEEEeeCCCCccCCCC
Q 047071 882 MTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 882 L~~Lr~LdLs~c~I~~LP~s 901 (902)
|.+|++|+|++|+|+.+|++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56788888888888888865
No 418
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.68 E-value=0.2 Score=34.49 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=16.1
Q ss_pred CCCccEEEeeCCCCccCCCC
Q 047071 882 MTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 882 L~~Lr~LdLs~c~I~~LP~s 901 (902)
|.+|++|+|++|+|+.+|++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56788888888888888865
No 419
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.60 E-value=0.3 Score=49.72 Aligned_cols=22 Identities=50% Similarity=0.622 Sum_probs=19.1
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998776
No 420
>PRK14530 adenylate kinase; Provisional
Probab=89.53 E-value=0.23 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999997655
No 421
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=89.52 E-value=0.17 Score=49.15 Aligned_cols=28 Identities=39% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEecCCCCChhhHHHHHhhcccccccccE
Q 047071 479 IGIHGISGIGKTTVLKALISYPKTKLIFDV 508 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~ 508 (902)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~--~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL--GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT--T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc--CCceeE
Confidence 6789999999999999998876 566654
No 422
>PTZ00185 ATPase alpha subunit; Provisional
Probab=89.50 E-value=1.1 Score=52.96 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=53.1
Q ss_pred ceEEEEecCCCCChhhHH-HHHhhcccc-----cccccEEEEeeccccCcHHHHHHHHHHhcCc-CC------CCCCcch
Q 047071 476 AGKIGIHGISGIGKTTVL-KALISYPKT-----KLIFDVIILVTVSRYWSVRKIQNDVLRQLPL-YC------EDSEADS 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA-~~vy~d~~v-----r~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~-~~------~~~~~~~ 542 (902)
-..++|.|..|+|||+|| ..+.+...+ ..+-+.++++-+++......-+.+.+++-+. .. .......
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 357899999999999997 556665422 1244567888888776543335555554431 11 1111111
Q ss_pred h------hHHHHHhhh--cCceeEEEEccchh
Q 047071 543 D------VAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 ~------l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
. ....+-+++ +++.+|+|+||+..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 0 111222333 47999999999864
No 423
>PRK14527 adenylate kinase; Provisional
Probab=89.45 E-value=0.29 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998665
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.41 E-value=0.1 Score=65.28 Aligned_cols=25 Identities=36% Similarity=0.325 Sum_probs=21.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
+..++.|+|+.|.|||||.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4479999999999999999888644
No 425
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.41 E-value=0.28 Score=48.06 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|+|+.|+|||||++.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 426
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=89.39 E-value=0.87 Score=54.56 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 454 LFVSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++|+...+.++.+.+.. ....-|.|+|..|+||+++|+.+.+.-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 44579999888888887754 344568899999999999999998754
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.34 E-value=0.31 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999997754
No 428
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.33 E-value=1.2 Score=52.45 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=47.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLFH 550 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~~ 550 (902)
-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... ++.++... ....+.+.+...+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~- 153 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE- 153 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH-
Confidence 46899999999999999999987653 22235678775443 2333222 34444321 11112333333222
Q ss_pred hhcCceeEEEEccch
Q 047071 551 FLNGKKFLLLLDDVW 565 (902)
Q Consensus 551 ~L~~kr~LLVLDDV~ 565 (902)
..+.-++|+|.+.
T Consensus 154 --~~~~~lVVIDSIq 166 (446)
T PRK11823 154 --EEKPDLVVIDSIQ 166 (446)
T ss_pred --hhCCCEEEEechh
Confidence 2356689999975
No 429
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=89.25 E-value=1.2 Score=52.17 Aligned_cols=88 Identities=18% Similarity=0.385 Sum_probs=50.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC------CC-CCcchh---
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC------ED-SEADSD--- 543 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~------~~-~~~~~~--- 543 (902)
.-..++|+|..|+|||||++.++.... .+.+++..+... .+..++...+...-.... .. ......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 345799999999999999999976541 234444333333 345566666555432221 11 101111
Q ss_pred --hHHHHHhhh--cCceeEEEEccchh
Q 047071 544 --VAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 544 --l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
....+-+++ +++++||++||+-.
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 111223333 58999999999864
No 430
>PRK12678 transcription termination factor Rho; Provisional
Probab=89.17 E-value=0.39 Score=57.35 Aligned_cols=100 Identities=21% Similarity=0.154 Sum_probs=52.6
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEE-EeeccccC-cHHHHHHHHHHhcCcCCCCCCc---
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVII-LVTVSRYW-SVRKIQNDVLRQLPLYCEDSEA--- 540 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~-WV~vs~~~-~~~~ll~~Il~~L~~~~~~~~~--- 540 (902)
++++|.. ..-.-.+|+|++|+|||||++.+++.... .+-++.+ .+-+.+.. .+.++.+.+-..+-....+...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 4444443 23357889999999999999999885531 2223433 33344443 3444433331111111111101
Q ss_pred --chhhHHHHHhhh--cCceeEEEEccchhh
Q 047071 541 --DSDVAEKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 541 --~~~l~~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
...+.-.+-+++ .++.+||++|++...
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 111222233344 579999999998643
No 431
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.13 E-value=0.23 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999997665
No 432
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.12 E-value=0.29 Score=50.33 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.2
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997654
No 433
>PRK13949 shikimate kinase; Provisional
Probab=89.08 E-value=0.29 Score=49.83 Aligned_cols=23 Identities=43% Similarity=0.413 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|+.|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998776
No 434
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.08 E-value=0.33 Score=50.50 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999997754
No 435
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.07 E-value=0.59 Score=47.65 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhhHHHHHhhccc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
+|.|.|+.|+||||+++.+++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987763
No 436
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.01 E-value=0.28 Score=48.18 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999997665
No 437
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.96 E-value=0.22 Score=52.33 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=57.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcc---hhhHHHHHhh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEAD---SDVAEKLFHF 551 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~---~~l~~~L~~~ 551 (902)
..+++.|.|+.|.||||+.+.++...-. ..+-+++.... .. ..+...|...+.......... ......+...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIM---AQIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---HHcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 3478999999999999999888633210 01112221111 01 122223333333221111011 1111112222
Q ss_pred --hcCceeEEEEccchh---hhh----hhhhcCCCCCCCCCcEEEEEcccCCccccc
Q 047071 552 --LNGKKFLLLLDDVWE---QIN----LQEVGIPDPSSENVGKIVVASRTVGACLEM 599 (902)
Q Consensus 552 --L~~kr~LLVLDDV~d---~~~----~~~L~~~l~~~~~GSkIIVTTR~~~va~~~ 599 (902)
+..++-|++||.... ..+ ...+...+. ..|+.+|++|.+..++...
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 235688999999732 211 112222222 2377899999987765543
No 438
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=88.93 E-value=0.33 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|++|+||||+|+.+++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 439
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.90 E-value=0.31 Score=49.89 Aligned_cols=27 Identities=41% Similarity=0.389 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999986653
No 440
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=88.90 E-value=0.72 Score=53.52 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHhhcC--------------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG--------------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~--------------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..+..+...+.. -..+-|.++|++|+|||+||+.+....
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 468888888887766632 014678999999999999999998765
No 441
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=88.89 E-value=1.2 Score=50.47 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=41.1
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHH
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVL 528 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il 528 (902)
+++.|.. ..-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 4444432 233589999999999999999998865 23578888887654 4666666654
No 442
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=88.87 E-value=0.49 Score=56.60 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcC-----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEee
Q 047071 461 ERTVLKILQCISG-----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVT 513 (902)
Q Consensus 461 e~ele~L~~~L~~-----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~ 513 (902)
.+.++++..||.+ ...+++.+.|++|+||||.++.+++.. .|+.+-|.+
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 4456777777753 235799999999999999999998865 466666764
No 443
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.84 E-value=1.7 Score=51.23 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=46.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... +..++... ....+.+. +.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~----I~ 163 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQ----IC 163 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHH----HH
Confidence 346899999999999999999876552 22235678765443 3332221 22333221 11123333 33
Q ss_pred hhhc-CceeEEEEccchh
Q 047071 550 HFLN-GKKFLLLLDDVWE 566 (902)
Q Consensus 550 ~~L~-~kr~LLVLDDV~d 566 (902)
..+. .+.-++|+|.+..
T Consensus 164 ~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 164 ANIEEENPQACVIDSIQT 181 (454)
T ss_pred HHHHhcCCcEEEEecchh
Confidence 3332 3556899998753
No 444
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.83 E-value=1.1 Score=53.80 Aligned_cols=126 Identities=21% Similarity=0.113 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCCceEEEEecCCCCChhh-HHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-------
Q 047071 464 VLKILQCISGVEAGKIGIHGISGIGKTT-VLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC------- 535 (902)
Q Consensus 464 le~L~~~L~~~~~~VI~IvG~GGVGKTT-LA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~------- 535 (902)
.++|++.+.++ .||.|+|..|.|||| |++.+|.+-- .-++.+-++-.+......+.+.+.+.++...
T Consensus 361 R~~ll~~ir~n--~vvvivgETGSGKTTQl~QyL~edGY---~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 361 RDQLLSVIREN--QVVVIVGETGSGKTTQLAQYLYEDGY---ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHHhhC--cEEEEEecCCCCchhhhHHHHHhccc---ccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 35566666543 599999999999987 7777776541 1123333332333344556666666664322
Q ss_pred ---CCC----------CcchhhHHHHHhhhcCceeEEEEccchhh----hhhhhhcCCCCCCCCCcEEEEEcccCC
Q 047071 536 ---EDS----------EADSDVAEKLFHFLNGKKFLLLLDDVWEQ----INLQEVGIPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 536 ---~~~----------~~~~~l~~~L~~~L~~kr~LLVLDDV~d~----~~~~~L~~~l~~~~~GSkIIVTTR~~~ 594 (902)
.+. .+.--+.+.|....-.+-..||+|.+.+. +.+--|..........-|+||||-.-.
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 111 11112223333333346678999998753 222222111112234678999997643
No 445
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=1.4 Score=46.88 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.--+-+|.||.|.||||||..+.-++
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999998766
No 446
>PRK13975 thymidylate kinase; Provisional
Probab=88.79 E-value=0.3 Score=50.27 Aligned_cols=25 Identities=40% Similarity=0.368 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChhhHHHHHhhccc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.+|.|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988763
No 447
>PF13479 AAA_24: AAA domain
Probab=88.78 E-value=0.89 Score=47.96 Aligned_cols=20 Identities=50% Similarity=0.491 Sum_probs=18.1
Q ss_pred eEEEEecCCCCChhhHHHHH
Q 047071 477 GKIGIHGISGIGKTTVLKAL 496 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~v 496 (902)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999987
No 448
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=1.4 Score=55.50 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHhhcC------C--CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHH
Q 047071 458 RSTERTVLKILQCISG------V--EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 458 VGRe~ele~L~~~L~~------~--~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
+|-++.+..|-+.+.. + ......+.|+.|+|||-||+.++... -...+..+-++.+. ... +.+
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~--Fgse~~~IriDmse------~~e-vsk 635 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV--FGSEENFIRLDMSE------FQE-VSK 635 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH--cCCccceEEechhh------hhh-hhh
Confidence 6777777777776643 2 35567889999999999999987665 33344445554443 222 333
Q ss_pred hcCcCCCCCCcchhhHHHHHhhhcCcee-EEEEccchhh
Q 047071 530 QLPLYCEDSEADSDVAEKLFHFLNGKKF-LLLLDDVWEQ 567 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~~~L~~kr~-LLVLDDV~d~ 567 (902)
.++.+. .- -..+....|.+.++.++| +|+||||+..
T Consensus 636 ligsp~-gy-vG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 636 LIGSPP-GY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred ccCCCc-cc-ccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 333322 10 122333466677777766 7778999754
No 449
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=88.76 E-value=1.4 Score=51.64 Aligned_cols=90 Identities=20% Similarity=0.340 Sum_probs=55.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcchh-----
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEADSD----- 543 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~~~----- 543 (902)
-..++|.|.+|+|||||+..+..... +.+=..++++-+++.. .+.+++.++...=.... ........
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999876542 1222467777776553 56777777765321111 11111111
Q ss_pred -hHHHHHhhh---cCceeEEEEccchh
Q 047071 544 -VAEKLFHFL---NGKKFLLLLDDVWE 566 (902)
Q Consensus 544 -l~~~L~~~L---~~kr~LLVLDDV~d 566 (902)
..-.+-+++ +++++||++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 112334455 46899999999854
No 450
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=88.74 E-value=1.2 Score=45.50 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=43.3
Q ss_pred EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCC---CCcchhhHHHHHhhhcC
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCED---SEADSDVAEKLFHFLNG 554 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~---~~~~~~l~~~L~~~L~~ 554 (902)
++.|.|.+|+||||+|..+..... . ..+++.-...+ ..+..+.+.......... .....++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999999976541 1 23444444333 334444544333222111 11122333334332332
Q ss_pred ceeEEEEccch
Q 047071 555 KKFLLLLDDVW 565 (902)
Q Consensus 555 kr~LLVLDDV~ 565 (902)
.-++++|.+.
T Consensus 77 -~~~VlID~Lt 86 (170)
T PRK05800 77 -GRCVLVDCLT 86 (170)
T ss_pred -CCEEEehhHH
Confidence 3378899874
No 451
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=88.72 E-value=0.43 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
-.++.|+|.+|.||||+.+++...
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHH
Confidence 458999999999999999988654
No 452
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=88.71 E-value=0.39 Score=60.84 Aligned_cols=132 Identities=20% Similarity=0.173 Sum_probs=70.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhccccc--ccccEEEEeeccccC----cHH--HHHHHHHHhcCcCCCCCCcchhhHHHH
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTK--LIFDVIILVTVSRYW----SVR--KIQNDVLRQLPLYCEDSEADSDVAEKL 548 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr--~~Fd~i~WV~vs~~~----~~~--~ll~~Il~~L~~~~~~~~~~~~l~~~L 548 (902)
.-+.|+|-+|.||||+.+.++-....+ ..=+..+|+.+.... ... .+..-+...+.... .........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHH
Confidence 378899999999999998876433211 111233343332111 111 12222222222221 122223333
Q ss_pred HhhhcCceeEEEEccchhhh---------hhhhhcCCCCCCCCCcEEEEEcccCCcccccCcceeEEecccCHHHHH
Q 047071 549 FHFLNGKKFLLLLDDVWEQI---------NLQEVGIPDPSSENVGKIVVASRTVGACLEMDASKLIEVETVSKKEAW 616 (902)
Q Consensus 549 ~~~L~~kr~LLVLDDV~d~~---------~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~~~~~~~L~~Ls~ees~ 616 (902)
.+.+...++|+++|.++... ++..+.. .-+.+.+|+|+|....-........+++..+.++.-.
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~----~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ----EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh----hccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 57888999999999987542 1333322 2346789999987665443333445555555555444
No 453
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=88.69 E-value=1.7 Score=50.67 Aligned_cols=88 Identities=26% Similarity=0.430 Sum_probs=50.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC------CCCCcch-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC------EDSEADS----- 542 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~------~~~~~~~----- 542 (902)
.-..++|+|..|+|||||+..+.+... .+..++..++.. -++.++...+...-.... .......
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 345799999999999999999987552 234444445443 345556665554421111 1111111
Q ss_pred -hhHHHHHhhh--cCceeEEEEccchh
Q 047071 543 -DVAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 -~l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
...-.+-+++ +++++||++||+..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1111222333 58899999999854
No 454
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.65 E-value=0.71 Score=51.60 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=50.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
.-..+.|.|..|.|||||++.+..... .. ..++.+.-........ .....-...........-...+.+...|+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~--~~-~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP--KD-ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC--cc-ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 346899999999999999999886552 11 1222232111111110 000000000000011123445566667888
Q ss_pred ceeEEEEccchhhhhhhhh
Q 047071 555 KKFLLLLDDVWEQINLQEV 573 (902)
Q Consensus 555 kr~LLVLDDV~d~~~~~~L 573 (902)
.+-.||+|.+.+.+.+..+
T Consensus 218 ~pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 218 RPDRIILGELRGDEAFDFI 236 (308)
T ss_pred CCCeEEEeccCCHHHHHHH
Confidence 8889999999886655543
No 455
>COG4240 Predicted kinase [General function prediction only]
Probab=88.64 E-value=0.97 Score=47.95 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=56.7
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcC-----CCCCCcchhhHHHH
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLY-----CEDSEADSDVAEKL 548 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~-----~~~~~~~~~l~~~L 548 (902)
+++-+++|.|+-|.||||++..+++....+.- ..++.+++.+-+-...-...++++...- .++..+..-..+.|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 46779999999999999999999988743332 4777777777666666666777775221 14455666666666
Q ss_pred HhhhcCce
Q 047071 549 FHFLNGKK 556 (902)
Q Consensus 549 ~~~L~~kr 556 (902)
....+++.
T Consensus 127 nai~~g~~ 134 (300)
T COG4240 127 NAIARGGP 134 (300)
T ss_pred HHHhcCCC
Confidence 66656553
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=88.58 E-value=1.8 Score=50.70 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=52.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC------CCCCcch------
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC------EDSEADS------ 542 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~------~~~~~~~------ 542 (902)
.-..++|+|..|+|||||+..++..... ...++.+.-.+...+.+++...+..-+... ....+..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3458899999999999999999876531 223333323334567777776665432211 1111111
Q ss_pred hhHHHHHhhh--cCceeEEEEccchhh
Q 047071 543 DVAEKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 543 ~l~~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
.....+-+++ ++++.||++||+-..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1111222333 478999999998653
No 457
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.51 E-value=0.25 Score=61.09 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=58.1
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCC---CCCCCCccEEEeecCCCCceeChh---h---hcCCCCcc
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPE---KPSCSELSVLFLQRNYQLKVIPMS---F---FQFMTSLK 886 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~---~~~L~~Lr~L~Ls~c~~L~~LP~s---f---Ig~L~~Lr 886 (902)
...+...+.++..+-.++++++|++|.+.+-.++.-++ ...|++|++||+|+... ..-|.- + -..|++||
T Consensus 175 L~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLr 253 (699)
T KOG3665|consen 175 LRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELR 253 (699)
T ss_pred cceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc-ccchHHHHHHHHhcccCcccc
Confidence 34555666677777778999999999998877765443 38999999999995443 222311 0 23599999
Q ss_pred EEEeeCCCCc
Q 047071 887 VLNLSKTRIN 896 (902)
Q Consensus 887 ~LdLs~c~I~ 896 (902)
.||.|+|.+.
T Consensus 254 fLDcSgTdi~ 263 (699)
T KOG3665|consen 254 FLDCSGTDIN 263 (699)
T ss_pred EEecCCcchh
Confidence 9999999664
No 458
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=88.41 E-value=0.52 Score=53.26 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHhhcC------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 455 FVSRSTERTVLKILQCISG------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|.++.+++|++.+.. ..-+++.+.||.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999954 456899999999999999999997766
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.28 E-value=1.8 Score=51.60 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=55.3
Q ss_pred HHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC--------
Q 047071 466 KILQCISG--VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-------- 535 (902)
Q Consensus 466 ~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-------- 535 (902)
.|-.+|.. ..-.++.|.|++|+|||||+.+++... ..+-..+++++..+. ..++.... +.++...
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~ 325 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGL 325 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCc
Confidence 34444433 245789999999999999999987665 223345667655443 34444443 3333211
Q ss_pred -------CCCCcchhhHHHHHhhhcC-ceeEEEEccch
Q 047071 536 -------EDSEADSDVAEKLFHFLNG-KKFLLLLDDVW 565 (902)
Q Consensus 536 -------~~~~~~~~l~~~L~~~L~~-kr~LLVLDDV~ 565 (902)
+.....++....+.+.+.. +.-++|+|.+.
T Consensus 326 l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 326 LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 1112335555666665543 45578888875
No 460
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.24 E-value=0.42 Score=51.91 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
+.-+++.|+|.+|+|||+++.++...- ......++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCC
Confidence 355799999999999999999987766 455788899977664
No 461
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.22 E-value=0.4 Score=50.34 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
...+.|.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999999654
No 462
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=88.12 E-value=0.52 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|.+|.|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34589999999999999999997544
No 463
>PTZ00494 tuzin-like protein; Provisional
Probab=88.11 E-value=2.5 Score=49.07 Aligned_cols=188 Identities=12% Similarity=0.014 Sum_probs=105.0
Q ss_pred chhhHHHHHHHHHHhhcccCCccc---cccCCccccchHHHHHHHHHhhcC---CCceEEEEecCCCCChhhHHHHHhhc
Q 047071 426 EDEMPLVVKAEAEISSKTETDQWW---HEFGLFVSRSTERTVLKILQCISG---VEAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 426 ~~e~~~i~~~~~~is~~~~~~~~~---~~~~~~~~VGRe~ele~L~~~L~~---~~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
....-+++-.+...++..+..... ........|.|+.+-..+.+.|.+ ..++++.+.|.-|.||++|.+.....
T Consensus 339 qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk 418 (664)
T PTZ00494 339 QQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV 418 (664)
T ss_pred HHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH
Confidence 333344555555655554432211 112233458999888777777755 47899999999999999999988665
Q ss_pred ccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCC-CCCcchhhHHH----HHhhhcCceeEEEEccchhhhhhhhhc
Q 047071 500 PKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCE-DSEADSDVAEK----LFHFLNGKKFLLLLDDVWEQINLQEVG 574 (902)
Q Consensus 500 ~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~-~~~~~~~l~~~----L~~~L~~kr~LLVLDDV~d~~~~~~L~ 574 (902)
+. -..+||.+... ++-++.+.+.++.+.. ...|.-+.+.. -+....++.-+||+--=+ -..+..+.
T Consensus 419 E~-----~paV~VDVRg~---EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLRE-GssL~RVY 489 (664)
T PTZ00494 419 EG-----VALVHVDVGGT---EDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLRE-GSDLGRVY 489 (664)
T ss_pred cC-----CCeEEEEecCC---cchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEecc-CCcHHHHH
Confidence 53 23466766554 5668889999988762 22233332222 222345666677764211 11111110
Q ss_pred ---CCCCCCCCCcEEEEEcccCCccc---ccCcceeEEecccCHHHHHHHHHHH
Q 047071 575 ---IPDPSSENVGKIVVASRTVGACL---EMDASKLIEVETVSKKEAWELFYEQ 622 (902)
Q Consensus 575 ---~~l~~~~~GSkIIVTTR~~~va~---~~~~~~~~~L~~Ls~ees~~LF~~~ 622 (902)
..+.+...-|.|++----+.+.. ....-..|-+.+++.++|...-...
T Consensus 490 nE~vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 490 GEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred HHHHHHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 01122223455655332222210 1122357888999999887765443
No 464
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.11 E-value=2.2 Score=49.38 Aligned_cols=60 Identities=22% Similarity=0.177 Sum_probs=40.2
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec-cccCcHHHHHHHHHHhcCcCC
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV-SRYWSVRKIQNDVLRQLPLYC 535 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v-s~~~~~~~ll~~Il~~L~~~~ 535 (902)
..+.||-.+|.-|.||||.|-.+++...- ..+. +.-|++ ...+...+-++.+..+++.+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCc-eEEEecccCChHHHHHHHHHHHHcCCce
Confidence 35789999999999999999888887743 2222 222322 223345566777777777665
No 465
>PRK04182 cytidylate kinase; Provisional
Probab=88.10 E-value=0.37 Score=48.58 Aligned_cols=23 Identities=43% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|.|+.|+||||+|+.+++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998765
No 466
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=88.09 E-value=0.33 Score=50.61 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=21.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhccc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.-|.|+|++|+|||||+..+.++..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4688999999999999999987653
No 467
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.97 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.9
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+.++-|.++|++|.|||-+|++|+|.-
T Consensus 209 dppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc
Confidence 456778899999999999999998876
No 468
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=88.08 E-value=1.8 Score=50.65 Aligned_cols=89 Identities=19% Similarity=0.392 Sum_probs=48.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCC------CCCCc------c
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYC------EDSEA------D 541 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~------~~~~~------~ 541 (902)
.-..++|+|..|+|||||+..++.... .+..+...+.. ..+..++....+..-.... ....+ .
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 446899999999999999999987552 12322222222 2234444434343322111 11101 1
Q ss_pred hhhHHHHHhhh--cCceeEEEEccchhh
Q 047071 542 SDVAEKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 542 ~~l~~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
......+.++. .++++||++||+-..
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 11222233332 578999999998543
No 469
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=88.05 E-value=2 Score=50.25 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=50.1
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecc-ccCcHHHHHHHHHHhcCcCC----CCCCcchh-----
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVS-RYWSVRKIQNDVLRQLPLYC----EDSEADSD----- 543 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs-~~~~~~~ll~~Il~~L~~~~----~~~~~~~~----- 543 (902)
..-..++|.|..|+|||||.+.++.... .+...+..+. +..++.++..+......... ....+...
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 3446889999999999999999987652 2233333333 33455556555544322111 11111111
Q ss_pred ---hHHHHHhhh--cCceeEEEEccchh
Q 047071 544 ---VAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 544 ---l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
....+.+++ .++++|+++|++..
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 111222333 46899999999854
No 470
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=88.05 E-value=0.68 Score=52.98 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKT 502 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~v 502 (902)
.++=+-|||..|.|||-|.-.+|+...+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 5678999999999999999999987755
No 471
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=87.98 E-value=1.2 Score=52.18 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=57.2
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccc--ccc---------EEEEeeccccCcHHHHHHHHHHhcC-cCC------CC
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKL--IFD---------VIILVTVSRYWSVRKIQNDVLRQLP-LYC------ED 537 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~--~Fd---------~i~WV~vs~~~~~~~ll~~Il~~L~-~~~------~~ 537 (902)
-.-++|.|-+|+|||||+..+.+...... -.| .+++.-+++.....+.+...+..-+ ... ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 35789999999999999999887653100 012 6677778888777777777776654 221 11
Q ss_pred CCc-ch-----hhHHHHHhhhc---CceeEEEEccchh
Q 047071 538 SEA-DS-----DVAEKLFHFLN---GKKFLLLLDDVWE 566 (902)
Q Consensus 538 ~~~-~~-----~l~~~L~~~L~---~kr~LLVLDDV~d 566 (902)
... .. ...-.+-++++ ++++||++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111 11 11112334444 6899999999854
No 472
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=87.98 E-value=1.4 Score=52.06 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=50.3
Q ss_pred eEEEEecCCCCChhhHH-HHHhhcccccccccEE-EEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcc------
Q 047071 477 GKIGIHGISGIGKTTVL-KALISYPKTKLIFDVI-ILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEAD------ 541 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd~i-~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~------ 541 (902)
..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+++.. ++.++.+.+...=.... ......
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 57899999999999996 4455543 22433 677776544 56677776665422211 111111
Q ss_pred ----hhhHHHHHhhhcCceeEEEEccchhh
Q 047071 542 ----SDVAEKLFHFLNGKKFLLLLDDVWEQ 567 (902)
Q Consensus 542 ----~~l~~~L~~~L~~kr~LLVLDDV~d~ 567 (902)
-...+.++. +++++|||+||+...
T Consensus 218 p~~a~aiAEyfr~--~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 218 PYTGAALAEYFMY--RGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHhhHHHHHHH--cCCCEEEEEcChhHH
Confidence 112222222 579999999998643
No 473
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=87.97 E-value=0.86 Score=51.36 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHH
Q 047071 457 SRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
.+|++..+..+...+..+ +-+.+.|++|+|||+||+.++.... ..| .++.+.....+.++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~--~~~---~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALG--LPF---VRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecCCCCCHHHhcCch
Confidence 688888888777766543 3677899999999999999987763 333 455556666666655443
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=87.96 E-value=0.39 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...|.|+|+.|.|||||++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999998765
No 475
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=87.93 E-value=0.38 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|+++|.+|+|||||+..+++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 476
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=87.87 E-value=0.42 Score=48.55 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=26.6
Q ss_pred EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR 516 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~ 516 (902)
++.|.|++|+|||+||.++..... ..=..++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence 367899999999999998866542 2224567876544
No 477
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=87.85 E-value=0.44 Score=51.64 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.+..|.++||+|.||||+.+.++.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 456889999999999999999987773
No 478
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=87.81 E-value=0.51 Score=52.73 Aligned_cols=46 Identities=26% Similarity=0.248 Sum_probs=28.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHH
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQ 524 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll 524 (902)
+++.+.|-|||||||+|...+-....+. ..++-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999977765442121 234555444444444443
No 479
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=87.78 E-value=0.51 Score=48.70 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++.|.|++|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999998765
No 480
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.77 E-value=0.59 Score=48.81 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=48.5
Q ss_pred eeccCCCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCcee---ChhhhcCCCCccEEEeeCC
Q 047071 819 LLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVI---PMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 819 l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~L---P~sfIg~L~~Lr~LdLs~c 893 (902)
+.+.+..+..++.+..++.|.+|.|.+|.|..+.+. .-+++|..|.|. +.+|.+| -+ ...++.|++|-+-++
T Consensus 47 iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~p--La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 47 IDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDP--LASCPKLEYLTLLGN 123 (233)
T ss_pred ecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEec-Ccchhhhhhcch--hccCCccceeeecCC
Confidence 344555666667777777777777777777776555 556677777777 3334333 22 345667777777776
Q ss_pred CCcc
Q 047071 894 RINC 897 (902)
Q Consensus 894 ~I~~ 897 (902)
.++.
T Consensus 124 pv~~ 127 (233)
T KOG1644|consen 124 PVEH 127 (233)
T ss_pred chhc
Confidence 5554
No 481
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=87.67 E-value=0.6 Score=52.50 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=33.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHH
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQND 526 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~ 526 (902)
.+++.+.|-|||||||+|...+-... .....++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988654442 22244666666666666655544
No 482
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=87.63 E-value=1.4 Score=46.87 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=34.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
.++.|.|.+|+|||+++.+++.+..... =..++|++... +..++...++..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHHH
Confidence 5899999999999999998876553221 23566776544 455566665543
No 483
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=87.63 E-value=1.9 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..-..++|+|..|+|||||++.+.+..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 445689999999999999999988765
No 484
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=87.58 E-value=0.37 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=19.8
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999997764
No 485
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.58 E-value=0.34 Score=52.19 Aligned_cols=64 Identities=27% Similarity=0.290 Sum_probs=47.7
Q ss_pred ccccccEEEeccCCCcccCCCCCCCCCccEEEeecC--CCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 833 KEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRN--YQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 833 ~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c--~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
..+..|..|++.++.+..+-....|++|++|.|+.+ .....++.. ..++++|++|+|++++|+-
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc
Confidence 345566777777777777777788999999999944 223455555 6677999999999997764
No 486
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=87.56 E-value=2 Score=50.00 Aligned_cols=88 Identities=24% Similarity=0.380 Sum_probs=49.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC------CCCCcch-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC------EDSEADS----- 542 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~------~~~~~~~----- 542 (902)
.-..++|+|..|+|||||++.+++.... +.....-++.. ..+.++....+.+-+... .......
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 4468999999999999999988875521 22222223333 345556555544322111 1111111
Q ss_pred -hhHHHHHhhh--cCceeEEEEccchh
Q 047071 543 -DVAEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 543 -~l~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
...-.+-+++ +++++||++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 1111222333 47899999999854
No 487
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=87.53 E-value=1.5 Score=44.66 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 458 RSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 458 VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
||....+.++++.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 6777777777776643 223456699999999999999998754
No 488
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=87.50 E-value=0.42 Score=47.77 Aligned_cols=23 Identities=48% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999997654
No 489
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.49 E-value=0.89 Score=47.30 Aligned_cols=118 Identities=15% Similarity=0.068 Sum_probs=58.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec---cccCcHHHHHHHHH--Hh--cCcCC-CCCCcc-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV---SRYWSVRKIQNDVL--RQ--LPLYC-EDSEAD----- 541 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v---s~~~~~~~ll~~Il--~~--L~~~~-~~~~~~----- 541 (902)
....|-|+|..|-||||.|..++-... ...+ .+..+.. ........++..+- .- .+... ....+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~-g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV-GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH-HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346889999999999999977754432 1112 2222222 21223333433320 00 01110 000011
Q ss_pred --hhhHHHHHhhhcC-ceeEEEEccchhhh-----hhhhhcCCCCCCCCCcEEEEEcccCC
Q 047071 542 --SDVAEKLFHFLNG-KKFLLLLDDVWEQI-----NLQEVGIPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 542 --~~l~~~L~~~L~~-kr~LLVLDDV~d~~-----~~~~L~~~l~~~~~GSkIIVTTR~~~ 594 (902)
.......++.+.. +--|||||.+-..- +.+.+...+.....+.-||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333444444 44599999985432 22333333334455678999999753
No 490
>PLN02200 adenylate kinase family protein
Probab=87.48 E-value=0.44 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+.+|.|.|++|+||||+|+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 491
>PHA02774 E1; Provisional
Probab=87.48 E-value=0.87 Score=54.62 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec
Q 047071 462 RTVLKILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV 514 (902)
Q Consensus 462 ~ele~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v 514 (902)
.-+..|..+|.. +....+.|+|++|.|||.+|..+.+-.. -..+.|++.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 344555555543 2345899999999999999999987652 234566654
No 492
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=87.47 E-value=0.42 Score=51.49 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.2
Q ss_pred EecCCCCChhhHHHHHhhccc
Q 047071 481 IHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 481 IvG~GGVGKTTLA~~vy~d~~ 501 (902)
|+||+|+||||+++.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988764
No 493
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=87.45 E-value=0.42 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.++|.+|+|||||+..+++..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998654
No 494
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=87.45 E-value=1.6 Score=52.03 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=50.6
Q ss_pred ceEEEEecCCCCChhhHH-HHHhhcccccccccEE-EEeeccccC-cHHHHHHHHHHhcCcCC------CCCCcc-hhh-
Q 047071 476 AGKIGIHGISGIGKTTVL-KALISYPKTKLIFDVI-ILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSEAD-SDV- 544 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd~i-~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~~~-~~l- 544 (902)
-..++|.|..|+|||+|| ..+.+.. .-+.+ +++.+++.. .+.++...+...=.... ...... ...
T Consensus 162 GQr~~Ifg~~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~ 237 (502)
T PRK09281 162 GQRELIIGDRQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYL 237 (502)
T ss_pred CcEEEeecCCCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHH
Confidence 357899999999999995 4454433 23443 677776654 46666666665422211 111111 110
Q ss_pred ----HHHHHhhh--cCceeEEEEccchhh
Q 047071 545 ----AEKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 545 ----~~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
...+-+++ +++++|||+||+..-
T Consensus 238 a~~~a~tiAEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 238 APYAGCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCchHH
Confidence 11122233 379999999998643
No 495
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=87.44 E-value=0.27 Score=54.07 Aligned_cols=64 Identities=27% Similarity=0.313 Sum_probs=0.0
Q ss_pred cccccccEEEeccCCCcc-----cCCCC-CCCCCccEEEeecCCCC----ceeChhhhcCCCCccEEEeeCCCCc
Q 047071 832 LKEWEQAKFIFLMDNELC-----TLPEK-PSCSELSVLFLQRNYQL----KVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~-----~LP~~-~~L~~Lr~L~Ls~c~~L----~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+..+.+|+.|+|.+|.+. .++.. ..+++|++|+|++|.-- ..++.. +.++++|++|+|++|.+.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCCcCc
No 496
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=87.30 E-value=0.94 Score=46.54 Aligned_cols=25 Identities=40% Similarity=0.376 Sum_probs=22.2
Q ss_pred eEEEEecCCCCChhhHHHHHhhccc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
..|+|.|..|+||||+++.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987664
No 497
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=87.29 E-value=0.43 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|.+|+|||||+..+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997643
No 498
>PRK14532 adenylate kinase; Provisional
Probab=87.27 E-value=0.41 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999997655
No 499
>PRK06761 hypothetical protein; Provisional
Probab=87.10 E-value=0.65 Score=51.28 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=26.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
++|.|.|++|+||||+++.+++... ...++...+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~-~~g~~v~~~~ 38 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS-QNGIEVELYL 38 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-cCceEEEEEe
Confidence 5799999999999999999998874 3344444433
No 500
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=87.10 E-value=0.5 Score=45.91 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
..+|+++|..|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998754
Done!