Query 047071
Match_columns 902
No_of_seqs 485 out of 2986
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.9E-45 9.7E-50 433.9 17.6 306 458-780 131-469 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-36 4.3E-41 388.4 27.2 304 455-780 124-450 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1E-36 3.5E-41 371.2 16.8 283 457-775 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.9E-33 1.3E-37 331.7 25.3 302 455-780 124-450 (591)
5 2qen_A Walker-type ATPase; unk 99.6 7.5E-15 2.6E-19 161.4 16.4 290 453-776 10-349 (350)
6 1w5s_A Origin recognition comp 99.6 7.6E-15 2.6E-19 165.6 12.5 306 453-771 20-387 (412)
7 2fna_A Conserved hypothetical 99.6 4.2E-14 1.4E-18 155.6 16.9 293 453-775 11-356 (357)
8 2v1u_A Cell division control p 99.3 1.7E-11 5.9E-16 136.4 18.9 293 453-759 17-351 (387)
9 2qby_A CDC6 homolog 1, cell di 99.3 2.4E-11 8.3E-16 135.0 17.3 294 452-759 17-348 (386)
10 2qby_B CDC6 homolog 3, cell di 99.3 5.1E-11 1.8E-15 133.0 19.6 285 454-759 19-339 (384)
11 1fnn_A CDC6P, cell division co 99.2 9.2E-11 3.2E-15 130.9 17.5 296 452-759 14-351 (389)
12 1njg_A DNA polymerase III subu 99.1 1.1E-10 3.7E-15 120.1 8.2 194 454-655 22-229 (250)
13 2chg_A Replication factor C sm 99.0 8.2E-10 2.8E-14 112.2 12.4 184 454-653 16-203 (226)
14 1sxj_B Activator 1 37 kDa subu 98.8 1.1E-08 3.8E-13 111.0 9.9 184 454-653 20-209 (323)
15 3qfl_A MLA10; coiled-coil, (CC 98.7 1.7E-09 5.7E-14 101.6 -0.3 64 322-390 2-81 (115)
16 1hqc_A RUVB; extended AAA-ATPa 98.6 3.8E-07 1.3E-11 99.3 16.8 174 453-654 10-211 (324)
17 1iqp_A RFCS; clamp loader, ext 98.6 5.1E-08 1.7E-12 105.9 7.9 184 454-653 24-211 (327)
18 2chq_A Replication factor C sm 98.5 6E-07 2.1E-11 97.1 12.7 179 454-652 16-202 (319)
19 1jr3_A DNA polymerase III subu 98.4 1E-06 3.4E-11 97.7 11.6 192 454-654 15-221 (373)
20 1jbk_A CLPB protein; beta barr 98.3 7.3E-07 2.5E-11 88.0 6.9 47 454-500 21-67 (195)
21 3bos_A Putative DNA replicatio 98.3 3.8E-07 1.3E-11 94.1 4.8 170 455-652 28-215 (242)
22 3te6_A Regulatory protein SIR3 98.3 1.7E-06 5.8E-11 95.1 9.8 166 457-625 22-213 (318)
23 3h4m_A Proteasome-activating n 98.3 5.9E-06 2E-10 88.3 13.4 173 451-646 13-222 (285)
24 2wfh_A SLIT homolog 2 protein 98.2 3E-06 1E-10 85.9 10.1 86 815-901 32-120 (193)
25 1sxj_A Activator 1 95 kDa subu 98.2 1.1E-05 3.8E-10 94.4 15.9 187 454-653 38-252 (516)
26 3e6j_A Variable lymphocyte rec 98.2 3.6E-06 1.2E-10 87.4 9.9 84 816-901 66-153 (229)
27 2o6r_A Variable lymphocyte rec 98.2 4.7E-06 1.6E-10 82.6 10.1 85 816-901 30-118 (177)
28 1a9n_A U2A', U2A'; complex (nu 98.2 2.2E-06 7.5E-11 85.1 7.6 83 816-900 44-130 (176)
29 2r9u_A Variable lymphocyte rec 98.2 3.7E-06 1.3E-10 83.9 9.0 86 814-900 33-122 (174)
30 2ifg_A High affinity nerve gro 98.1 3.2E-06 1.1E-10 92.9 8.6 76 825-901 20-98 (347)
31 3e6j_A Variable lymphocyte rec 98.1 6.2E-06 2.1E-10 85.7 9.9 85 816-901 42-130 (229)
32 2r9u_A Variable lymphocyte rec 98.1 6.2E-06 2.1E-10 82.2 9.3 82 818-901 16-99 (174)
33 4g8a_A TOLL-like receptor 4; l 98.1 4E-06 1.4E-10 98.7 8.8 87 814-901 52-142 (635)
34 1sxj_D Activator 1 41 kDa subu 98.1 4.3E-06 1.5E-10 91.9 8.3 193 454-652 36-233 (353)
35 2o6s_A Variable lymphocyte rec 98.1 9.3E-06 3.2E-10 82.5 10.1 84 817-901 55-142 (208)
36 4fcg_A Uncharacterized protein 98.1 3.6E-06 1.2E-10 92.4 7.1 80 819-900 132-223 (328)
37 4fcg_A Uncharacterized protein 98.1 4.6E-06 1.6E-10 91.5 7.9 86 815-901 105-201 (328)
38 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.2E-05 4.1E-10 84.5 10.7 175 453-647 4-214 (262)
39 3pfi_A Holliday junction ATP-d 98.1 2.2E-05 7.4E-10 86.2 13.0 171 453-652 27-225 (338)
40 3g39_A Variable lymphocyte rec 98.0 1.1E-05 3.8E-10 79.9 9.3 85 814-899 30-118 (170)
41 1dce_A Protein (RAB geranylger 98.0 4.5E-06 1.5E-10 98.9 7.6 85 815-901 464-551 (567)
42 3g39_A Variable lymphocyte rec 98.0 1E-05 3.5E-10 80.2 8.9 81 819-901 14-96 (170)
43 3rfs_A Internalin B, repeat mo 98.0 1.4E-05 4.7E-10 85.0 10.5 86 815-901 86-175 (272)
44 4b8c_D Glucose-repressible alc 98.0 3E-06 1E-10 103.3 6.0 82 816-899 249-332 (727)
45 3uk6_A RUVB-like 2; hexameric 98.0 3.7E-05 1.3E-09 85.1 14.4 197 454-652 43-301 (368)
46 2v9t_B SLIT homolog 2 protein 98.0 9.1E-06 3.1E-10 84.0 8.6 84 817-901 59-146 (220)
47 1d2n_A N-ethylmaleimide-sensit 98.0 9.4E-05 3.2E-09 78.7 16.7 167 456-647 34-230 (272)
48 2o6s_A Variable lymphocyte rec 98.0 1.7E-05 5.7E-10 80.6 10.3 80 816-896 78-161 (208)
49 1sxj_E Activator 1 40 kDa subu 98.0 1.6E-05 5.3E-10 87.7 10.7 193 454-653 13-236 (354)
50 3m19_A Variable lymphocyte rec 98.0 1.5E-05 5.2E-10 83.5 10.0 84 816-900 61-148 (251)
51 1w8a_A SLIT protein; signaling 98.0 1.5E-05 5E-10 80.5 9.1 84 815-899 30-118 (192)
52 1p9a_G Platelet glycoprotein I 98.0 2.5E-05 8.5E-10 84.2 11.4 86 816-902 102-191 (290)
53 3rfs_A Internalin B, repeat mo 98.0 1.2E-05 4.1E-10 85.5 8.6 88 813-901 62-151 (272)
54 1a9n_A U2A', U2A'; complex (nu 98.0 5.7E-06 1.9E-10 82.1 5.6 83 817-900 22-105 (176)
55 2xwt_C Thyrotropin receptor; s 98.0 7.7E-06 2.6E-10 85.0 6.8 87 814-900 31-122 (239)
56 2v9t_B SLIT homolog 2 protein 98.0 1.7E-05 5.7E-10 81.9 9.2 75 819-894 85-163 (220)
57 3u61_B DNA polymerase accessor 97.9 2.4E-05 8.1E-10 85.4 10.6 174 454-650 25-212 (324)
58 2ell_A Acidic leucine-rich nuc 97.9 1.2E-05 4.2E-10 78.7 7.4 83 816-900 51-137 (168)
59 2z4s_A Chromosomal replication 97.9 6.4E-06 2.2E-10 94.5 6.1 171 463-651 116-303 (440)
60 1dce_A Protein (RAB geranylger 97.9 1.4E-05 4.6E-10 94.8 8.8 81 818-901 445-528 (567)
61 3m19_A Variable lymphocyte rec 97.9 2.8E-05 9.6E-10 81.5 10.3 79 821-900 90-172 (251)
62 1p9a_G Platelet glycoprotein I 97.9 1.7E-05 5.7E-10 85.6 8.6 85 816-901 79-166 (290)
63 2v70_A SLIT-2, SLIT homolog 2 97.9 1.8E-05 6E-10 81.8 8.5 80 819-899 62-145 (220)
64 3syl_A Protein CBBX; photosynt 97.9 1.8E-05 6.2E-10 85.5 8.8 150 456-625 32-219 (309)
65 2ell_A Acidic leucine-rich nuc 97.9 7.2E-06 2.5E-10 80.4 5.2 86 815-901 72-165 (168)
66 2je0_A Acidic leucine-rich nuc 97.9 5.9E-06 2E-10 79.4 4.4 83 816-900 44-130 (149)
67 2o6q_A Variable lymphocyte rec 97.9 2.9E-05 9.8E-10 82.4 10.1 84 817-901 64-151 (270)
68 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00021 7.1E-09 78.5 16.9 175 452-647 9-215 (322)
69 3eie_A Vacuolar protein sortin 97.9 9.1E-05 3.1E-09 81.1 13.9 173 452-646 15-219 (322)
70 4b8c_D Glucose-repressible alc 97.9 1.1E-05 3.6E-10 98.5 6.8 83 818-902 228-312 (727)
71 3d8b_A Fidgetin-like protein 1 97.9 0.00016 5.5E-09 80.4 15.7 180 452-653 81-294 (357)
72 2v70_A SLIT-2, SLIT homolog 2 97.9 2.1E-05 7.2E-10 81.2 7.8 80 816-896 83-166 (220)
73 2o6q_A Variable lymphocyte rec 97.8 4.9E-05 1.7E-09 80.6 10.4 85 816-901 87-175 (270)
74 2je0_A Acidic leucine-rich nuc 97.8 1.1E-05 3.9E-10 77.3 5.0 70 828-899 33-104 (149)
75 2o6r_A Variable lymphocyte rec 97.8 4.5E-05 1.5E-09 75.5 9.2 78 822-901 15-94 (177)
76 2p65_A Hypothetical protein PF 97.8 2.7E-05 9.3E-10 76.6 7.2 47 454-500 21-67 (187)
77 3pvs_A Replication-associated 97.8 4.4E-05 1.5E-09 87.8 9.9 172 454-651 25-212 (447)
78 1sxj_C Activator 1 40 kDa subu 97.8 0.0001 3.5E-09 81.2 12.1 179 454-649 24-207 (340)
79 2wfh_A SLIT homolog 2 protein 97.8 4.1E-05 1.4E-09 77.5 8.1 81 819-901 15-96 (193)
80 2xot_A Amphoterin-induced prot 97.8 3.3E-05 1.1E-09 85.8 8.0 83 817-900 91-180 (361)
81 2z80_A TOLL-like receptor 2, v 97.8 3.6E-05 1.2E-09 84.7 8.2 83 817-900 55-141 (353)
82 3o6n_A APL1; leucine-rich repe 97.8 2.2E-05 7.5E-10 87.6 6.5 83 817-900 72-158 (390)
83 2zan_A Vacuolar protein sortin 97.8 0.00033 1.1E-08 80.4 16.3 176 451-647 130-337 (444)
84 3b9p_A CG5977-PA, isoform A; A 97.7 0.0004 1.4E-08 74.5 15.9 175 452-648 18-226 (297)
85 2qp9_X Vacuolar protein sortin 97.7 0.00013 4.4E-09 81.2 12.2 173 452-646 48-252 (355)
86 3zyj_A Leucine-rich repeat-con 97.7 5.5E-05 1.9E-09 86.1 9.1 82 819-900 117-202 (440)
87 3zyi_A Leucine-rich repeat-con 97.7 6.7E-05 2.3E-09 85.6 9.7 84 817-900 126-213 (452)
88 1h6u_A Internalin H; cell adhe 97.7 4.6E-05 1.6E-09 82.7 7.9 84 814-900 63-146 (308)
89 4ezg_A Putative uncharacterize 97.7 5.2E-05 1.8E-09 76.5 7.8 68 830-899 106-175 (197)
90 3vfd_A Spastin; ATPase, microt 97.7 0.0003 1E-08 79.0 14.8 175 452-648 112-319 (389)
91 1a5t_A Delta prime, HOLB; zinc 97.7 0.00027 9.4E-09 77.8 14.0 180 461-654 8-205 (334)
92 3zyi_A Leucine-rich repeat-con 97.7 4.9E-05 1.7E-09 86.7 8.1 67 832-899 119-188 (452)
93 3cf0_A Transitional endoplasmi 97.7 0.00073 2.5E-08 73.2 16.9 175 452-648 12-222 (301)
94 3zyj_A Leucine-rich repeat-con 97.7 7.3E-05 2.5E-09 85.0 9.4 85 816-901 187-273 (440)
95 2xot_A Amphoterin-induced prot 97.7 5.6E-05 1.9E-09 83.8 8.2 83 818-901 68-154 (361)
96 3pxg_A Negative regulator of g 97.7 0.00022 7.6E-09 82.4 13.2 151 453-625 178-340 (468)
97 3oja_B Anopheles plasmodium-re 97.7 3.6E-05 1.2E-09 91.3 6.7 85 816-901 77-165 (597)
98 4fmz_A Internalin; leucine ric 97.7 6E-05 2.1E-09 82.3 8.0 75 816-893 68-142 (347)
99 1h6t_A Internalin B; cell adhe 97.7 6.3E-05 2.2E-09 81.0 7.9 83 814-899 68-150 (291)
100 4ezg_A Putative uncharacterize 97.7 5.7E-05 1.9E-09 76.2 7.0 83 815-899 67-153 (197)
101 1l8q_A Chromosomal replication 97.6 8.7E-05 3E-09 81.0 8.8 166 462-648 21-202 (324)
102 2z62_A TOLL-like receptor 4, v 97.6 8E-05 2.7E-09 78.9 8.3 65 832-897 72-138 (276)
103 1ozn_A Reticulon 4 receptor; N 97.6 9.2E-05 3.2E-09 78.8 8.5 69 831-900 75-146 (285)
104 1h6u_A Internalin H; cell adhe 97.6 0.00011 3.7E-09 79.7 8.8 83 815-900 86-168 (308)
105 3oja_B Anopheles plasmodium-re 97.6 9E-05 3.1E-09 87.9 8.8 85 815-900 100-188 (597)
106 1xeu_A Internalin C; cellular 97.6 4.3E-05 1.5E-09 81.1 5.4 81 815-899 42-122 (263)
107 2xwt_C Thyrotropin receptor; s 97.6 5.7E-05 1.9E-09 78.4 6.1 73 826-900 117-197 (239)
108 2z63_A TOLL-like receptor 4, v 97.6 8.7E-05 3E-09 86.5 8.3 65 832-897 72-138 (570)
109 3vq2_A TLR4, TOLL-like recepto 97.6 7.8E-05 2.7E-09 87.9 8.0 64 832-896 76-141 (606)
110 1xku_A Decorin; proteoglycan, 97.6 0.00015 5.1E-09 78.9 9.6 64 832-899 72-137 (330)
111 3o6n_A APL1; leucine-rich repe 97.6 0.00011 3.9E-09 81.8 8.8 85 815-900 94-182 (390)
112 4g8a_A TOLL-like receptor 4; l 97.6 6.3E-05 2.2E-09 88.4 7.0 78 820-899 106-189 (635)
113 1h6t_A Internalin B; cell adhe 97.6 7.5E-05 2.6E-09 80.4 6.9 83 815-900 113-195 (291)
114 1xeu_A Internalin C; cellular 97.6 0.00019 6.4E-09 76.2 9.7 76 819-898 90-165 (263)
115 2ft3_A Biglycan; proteoglycan, 97.6 0.00017 5.7E-09 78.7 9.4 64 836-900 54-119 (332)
116 1o6v_A Internalin A; bacterial 97.6 0.0001 3.5E-09 84.5 8.0 82 815-899 69-150 (466)
117 1ozn_A Reticulon 4 receptor; N 97.5 0.00022 7.6E-09 75.8 10.1 83 816-900 131-218 (285)
118 2id5_A Lingo-1, leucine rich r 97.5 9.5E-05 3.3E-09 84.6 7.7 67 832-899 76-144 (477)
119 1qvr_A CLPB protein; coiled co 97.5 9.5E-05 3.3E-09 91.7 8.0 155 453-623 168-345 (854)
120 1m9s_A Internalin B; cell inva 97.5 0.00016 5.6E-09 86.2 9.5 83 815-900 88-170 (605)
121 1w8a_A SLIT protein; signaling 97.5 0.00019 6.6E-09 72.2 8.5 80 816-896 56-139 (192)
122 2ft3_A Biglycan; proteoglycan, 97.5 0.00013 4.6E-09 79.4 7.7 78 822-901 201-282 (332)
123 1m9s_A Internalin B; cell inva 97.5 0.00013 4.3E-09 87.1 8.0 83 815-900 110-192 (605)
124 1ziw_A TOLL-like receptor 3; i 97.5 0.00015 5.1E-09 86.8 8.4 82 818-900 53-138 (680)
125 2z80_A TOLL-like receptor 2, v 97.4 0.0002 6.8E-09 78.7 8.4 82 817-898 103-189 (353)
126 1xku_A Decorin; proteoglycan, 97.4 0.00017 5.7E-09 78.5 7.7 82 818-901 196-281 (330)
127 2z7x_B TOLL-like receptor 1, v 97.4 0.00013 4.5E-09 84.3 7.2 80 815-898 22-105 (520)
128 2z81_A CD282 antigen, TOLL-lik 97.4 0.00018 6E-09 83.7 8.2 67 831-898 45-113 (549)
129 3o53_A Protein LRIM1, AGAP0063 97.4 0.00011 3.6E-09 79.9 5.9 64 835-900 168-231 (317)
130 2z62_A TOLL-like receptor 4, v 97.4 0.00022 7.4E-09 75.5 8.2 68 831-900 95-166 (276)
131 4eco_A Uncharacterized protein 97.4 0.00016 5.4E-09 86.6 7.9 85 817-902 491-585 (636)
132 4ecn_A Leucine-rich repeat pro 97.4 0.00019 6.4E-09 89.2 8.4 86 816-902 730-825 (876)
133 4ecn_A Leucine-rich repeat pro 97.4 0.00017 6E-09 89.4 8.1 67 832-900 569-636 (876)
134 3vq2_A TLR4, TOLL-like recepto 97.4 0.00032 1.1E-08 82.6 10.0 83 816-900 82-170 (606)
135 4fmz_A Internalin; leucine ric 97.4 0.00015 5.1E-09 79.2 6.5 83 817-900 246-328 (347)
136 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 0.00021 7.1E-09 83.8 8.2 82 814-899 52-137 (562)
137 3pxi_A Negative regulator of g 97.4 0.00068 2.3E-08 82.9 13.0 153 453-625 178-340 (758)
138 3ec2_A DNA replication protein 97.4 8.6E-05 2.9E-09 73.8 4.1 117 460-593 19-143 (180)
139 2id5_A Lingo-1, leucine rich r 97.4 0.00028 9.5E-09 80.7 8.7 85 816-901 226-314 (477)
140 3bz5_A Internalin-J, INLJ; leu 97.4 0.00031 1.1E-08 80.7 9.1 79 815-899 65-143 (457)
141 3oja_A Leucine-rich immune mol 97.4 0.00013 4.6E-09 84.4 5.9 66 834-901 167-232 (487)
142 3v47_A TOLL-like receptor 5B a 97.4 0.0003 1E-08 79.6 8.7 67 832-900 319-388 (455)
143 3a79_B TLR6, VLRB.59, TOLL-lik 97.3 0.00033 1.1E-08 82.1 9.1 79 816-897 78-160 (562)
144 3j0a_A TOLL-like receptor 5; m 97.3 0.00025 8.5E-09 87.7 8.3 85 814-900 24-115 (844)
145 3v47_A TOLL-like receptor 5B a 97.3 0.0003 1E-08 79.7 8.2 82 814-897 30-117 (455)
146 4ay9_X Follicle-stimulating ho 97.3 0.00026 8.9E-09 78.0 7.5 89 813-901 29-122 (350)
147 1o6v_A Internalin A; bacterial 97.3 0.00023 8E-09 81.4 7.4 71 826-899 58-128 (466)
148 3t6q_A CD180 antigen; protein- 97.3 0.00025 8.6E-09 83.5 7.7 66 832-898 77-144 (606)
149 2z63_A TOLL-like receptor 4, v 97.3 0.0003 1E-08 81.9 8.3 82 817-900 79-166 (570)
150 2r62_A Cell division protease 97.3 0.00029 1E-08 74.4 7.4 48 453-500 9-68 (268)
151 1lv7_A FTSH; alpha/beta domain 97.3 0.0049 1.7E-07 64.6 16.4 154 452-625 9-197 (257)
152 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0019 6.3E-08 79.0 14.9 154 454-623 185-362 (758)
153 1ogq_A PGIP-2, polygalacturona 97.3 0.00011 3.7E-09 79.9 3.5 66 832-899 121-191 (313)
154 2z66_A Variable lymphocyte rec 97.3 0.00013 4.4E-09 78.4 4.0 82 816-899 30-117 (306)
155 1ogq_A PGIP-2, polygalacturona 97.3 0.00013 4.4E-09 79.3 4.0 71 829-901 93-168 (313)
156 2ifg_A High affinity nerve gro 97.3 0.00044 1.5E-08 75.7 8.3 80 816-897 33-117 (347)
157 1ziw_A TOLL-like receptor 3; i 97.3 0.00036 1.2E-08 83.5 8.3 84 816-900 75-162 (680)
158 2z7x_B TOLL-like receptor 1, v 97.3 0.00028 9.7E-09 81.5 7.0 79 816-897 47-129 (520)
159 4eco_A Uncharacterized protein 97.2 0.00017 5.7E-09 86.3 4.6 77 819-897 335-416 (636)
160 3hu3_A Transitional endoplasmi 97.2 0.0033 1.1E-07 72.9 15.2 170 454-646 203-406 (489)
161 1ds9_A Outer arm dynein; leuci 97.2 1.1E-05 3.6E-10 81.7 -5.2 80 817-899 51-131 (198)
162 3n70_A Transport activator; si 97.2 0.0003 1E-08 67.7 5.3 45 456-500 2-48 (145)
163 1ds9_A Outer arm dynein; leuci 97.2 6.7E-06 2.3E-10 83.2 -6.7 80 817-897 73-154 (198)
164 2gno_A DNA polymerase III, gam 97.2 0.00078 2.7E-08 73.4 9.1 145 460-623 2-152 (305)
165 2z66_A Variable lymphocyte rec 97.2 0.0006 2E-08 73.1 8.1 68 831-899 170-239 (306)
166 4b4t_L 26S protease subunit RP 97.2 0.002 6.8E-08 73.6 12.7 173 451-646 177-386 (437)
167 3g06_A SSPH2 (leucine-rich rep 97.2 0.00079 2.7E-08 80.5 9.7 73 819-900 86-158 (622)
168 1jl5_A Outer protein YOPM; leu 97.2 0.00085 2.9E-08 77.0 9.6 80 816-900 133-212 (454)
169 3o53_A Protein LRIM1, AGAP0063 97.1 0.0003 1E-08 76.4 5.3 78 817-896 172-250 (317)
170 4b4t_J 26S protease regulatory 97.1 0.0037 1.3E-07 70.5 13.8 174 451-647 144-354 (405)
171 4b4t_M 26S protease regulatory 97.1 0.0041 1.4E-07 70.9 14.1 172 452-646 178-386 (434)
172 2z81_A CD282 antigen, TOLL-lik 97.1 0.00098 3.4E-08 77.3 9.0 82 816-897 76-162 (549)
173 3cvr_A Invasion plasmid antige 97.0 0.001 3.5E-08 78.8 8.8 76 817-901 143-225 (571)
174 4ay9_X Follicle-stimulating ho 97.0 0.00035 1.2E-08 76.9 4.5 65 837-901 155-220 (350)
175 3bz5_A Internalin-J, INLJ; leu 97.0 0.0013 4.3E-08 75.6 9.1 77 816-898 87-164 (457)
176 1jl5_A Outer protein YOPM; leu 97.0 0.0014 4.7E-08 75.2 9.2 79 817-900 176-254 (454)
177 4b4t_K 26S protease regulatory 97.0 0.0079 2.7E-07 68.5 15.1 172 452-646 169-378 (428)
178 4b4t_H 26S protease regulatory 97.0 0.0049 1.7E-07 70.5 13.3 173 451-646 205-414 (467)
179 3cvr_A Invasion plasmid antige 97.0 0.0016 5.3E-08 77.2 9.5 77 815-900 121-197 (571)
180 4glp_A Monocyte differentiatio 96.9 0.00043 1.5E-08 74.8 4.1 68 833-902 194-270 (310)
181 2ce7_A Cell division protein F 96.9 0.0044 1.5E-07 71.6 12.6 173 453-647 14-221 (476)
182 3g06_A SSPH2 (leucine-rich rep 96.9 0.0014 4.7E-08 78.4 8.7 76 816-897 223-298 (622)
183 1ofh_A ATP-dependent HSL prote 96.9 0.0025 8.5E-08 68.2 9.8 45 456-500 16-74 (310)
184 3rgz_A Protein brassinosteroid 96.9 0.00082 2.8E-08 82.1 6.7 82 818-900 636-722 (768)
185 3rgz_A Protein brassinosteroid 96.9 0.00072 2.5E-08 82.6 5.9 70 831-901 627-699 (768)
186 2w58_A DNAI, primosome compone 96.9 0.002 6.9E-08 64.9 8.0 87 462-566 36-126 (202)
187 3j0a_A TOLL-like receptor 5; m 96.8 0.0011 3.9E-08 81.7 7.3 68 831-899 68-139 (844)
188 4glp_A Monocyte differentiatio 96.8 0.00054 1.8E-08 74.0 3.7 63 833-899 221-288 (310)
189 3oja_A Leucine-rich immune mol 96.8 0.00075 2.6E-08 78.1 5.1 78 817-896 172-250 (487)
190 3t6q_A CD180 antigen; protein- 96.8 0.002 6.9E-08 75.8 8.7 83 816-898 280-365 (606)
191 4fcw_A Chaperone protein CLPB; 96.8 0.0018 6.3E-08 69.5 7.6 45 456-500 18-71 (311)
192 1wwl_A Monocyte differentiatio 96.8 0.00076 2.6E-08 72.9 4.5 83 816-899 151-244 (312)
193 4b4t_I 26S protease regulatory 96.7 0.01 3.5E-07 67.4 13.2 172 452-646 179-387 (437)
194 2bjv_A PSP operon transcriptio 96.7 0.0017 5.7E-08 68.6 6.4 46 455-500 6-53 (265)
195 3co5_A Putative two-component 96.6 0.00075 2.6E-08 64.8 2.7 45 456-500 5-51 (143)
196 1in4_A RUVB, holliday junction 96.6 0.02 6.9E-07 62.8 14.5 169 455-652 25-221 (334)
197 2c9o_A RUVB-like 1; hexameric 96.6 0.014 4.8E-07 66.9 13.5 47 454-500 36-87 (456)
198 1wwl_A Monocyte differentiatio 96.6 0.0017 5.9E-08 70.1 5.3 61 832-896 249-309 (312)
199 3cf2_A TER ATPase, transitiona 96.5 0.0077 2.6E-07 73.7 11.0 173 453-647 202-407 (806)
200 1ixz_A ATP-dependent metallopr 96.4 0.021 7.2E-07 59.6 12.1 48 453-500 14-73 (254)
201 1iy2_A ATP-dependent metallopr 96.2 0.024 8.3E-07 60.2 11.9 172 453-647 38-245 (278)
202 3pxi_A Negative regulator of g 96.2 0.0028 9.5E-08 77.5 5.0 145 456-623 492-675 (758)
203 2dhr_A FTSH; AAA+ protein, hex 96.1 0.04 1.4E-06 64.0 13.6 170 452-647 28-236 (499)
204 1ojl_A Transcriptional regulat 96.1 0.0044 1.5E-07 67.3 5.1 45 456-500 3-49 (304)
205 2x8a_A Nuclear valosin-contain 96.1 0.033 1.1E-06 59.4 11.9 150 454-624 9-192 (274)
206 2cvh_A DNA repair and recombin 96.0 0.013 4.5E-07 59.2 8.3 85 475-565 19-115 (220)
207 2ast_B S-phase kinase-associat 95.9 0.0031 1E-07 68.2 2.9 65 832-897 114-183 (336)
208 3e4g_A ATP synthase subunit S, 95.8 0.0042 1.4E-07 62.3 3.4 66 831-896 80-153 (176)
209 3m6a_A ATP-dependent protease 95.8 0.024 8.3E-07 66.5 10.3 44 457-500 83-132 (543)
210 1ypw_A Transitional endoplasmi 95.8 0.025 8.5E-07 69.6 10.7 153 452-625 201-387 (806)
211 2ast_B S-phase kinase-associat 95.7 0.0026 8.8E-08 68.8 1.4 63 831-894 137-206 (336)
212 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0044 1.5E-07 67.9 3.2 69 476-566 123-193 (331)
213 2ca6_A RAN GTPase-activating p 95.6 0.0014 4.8E-08 72.8 -1.4 68 831-899 239-319 (386)
214 3e4g_A ATP synthase subunit S, 95.5 0.0021 7.3E-08 64.4 -0.2 60 837-896 62-128 (176)
215 3sb4_A Hypothetical leucine ri 95.5 0.018 6.1E-07 62.6 7.2 74 825-901 237-315 (329)
216 2kjq_A DNAA-related protein; s 95.4 0.02 6.7E-07 55.5 6.4 27 475-501 35-61 (149)
217 3t15_A Ribulose bisphosphate c 95.2 0.022 7.6E-07 61.3 6.4 26 475-500 35-60 (293)
218 3rw6_A Nuclear RNA export fact 95.1 0.011 3.7E-07 63.2 3.6 22 478-499 26-47 (267)
219 2qgz_A Helicase loader, putati 95.0 0.025 8.6E-07 61.5 6.3 42 459-500 132-176 (308)
220 1r6b_X CLPA protein; AAA+, N-t 94.9 0.033 1.1E-06 67.9 7.8 45 456-500 459-512 (758)
221 2w0m_A SSO2452; RECA, SSPF, un 94.8 0.024 8.2E-07 57.5 5.2 37 476-514 23-59 (235)
222 3hr8_A Protein RECA; alpha and 94.8 0.035 1.2E-06 61.7 6.8 84 476-566 61-150 (356)
223 1n0w_A DNA repair protein RAD5 94.8 0.05 1.7E-06 55.8 7.6 89 476-565 24-129 (243)
224 2ca6_A RAN GTPase-activating p 94.7 0.01 3.5E-07 65.8 2.1 65 831-897 211-288 (386)
225 2px0_A Flagellar biosynthesis 94.5 0.079 2.7E-06 57.3 8.7 87 475-564 104-191 (296)
226 2z43_A DNA repair and recombin 94.5 0.077 2.6E-06 57.9 8.6 90 476-566 107-214 (324)
227 1v5w_A DMC1, meiotic recombina 94.3 0.12 4.1E-06 57.0 9.5 91 475-566 121-230 (343)
228 1xp8_A RECA protein, recombina 94.2 0.064 2.2E-06 59.8 7.3 83 476-565 74-162 (366)
229 1rz3_A Hypothetical protein rb 94.1 0.04 1.4E-06 55.6 5.0 41 460-500 3-46 (201)
230 2i1q_A DNA repair and recombin 94.0 0.076 2.6E-06 57.6 7.2 90 475-565 97-214 (322)
231 3sb4_A Hypothetical leucine ri 93.9 0.059 2E-06 58.4 6.1 64 835-901 225-291 (329)
232 1g8p_A Magnesium-chelatase 38 93.9 0.033 1.1E-06 60.6 4.1 49 452-500 21-69 (350)
233 2zr9_A Protein RECA, recombina 93.9 0.083 2.8E-06 58.5 7.3 85 475-566 60-150 (349)
234 1qvr_A CLPB protein; coiled co 93.8 0.041 1.4E-06 68.1 5.3 45 456-500 559-612 (854)
235 3io5_A Recombination and repai 93.7 0.1 3.5E-06 57.0 7.4 85 477-566 29-122 (333)
236 1u94_A RECA protein, recombina 93.6 0.097 3.3E-06 58.1 7.3 85 475-566 62-152 (356)
237 3c8u_A Fructokinase; YP_612366 93.6 0.065 2.2E-06 54.3 5.4 38 463-500 7-46 (208)
238 1jr3_D DNA polymerase III, del 93.6 0.078 2.7E-06 58.0 6.3 163 467-652 9-183 (343)
239 3dm5_A SRP54, signal recogniti 93.3 0.24 8.3E-06 56.5 10.0 27 475-501 99-125 (443)
240 2b8t_A Thymidine kinase; deoxy 93.1 0.028 9.5E-07 58.4 1.7 113 475-595 11-128 (223)
241 3lw7_A Adenylate kinase relate 93.1 0.042 1.5E-06 52.8 2.9 20 477-496 2-21 (179)
242 3kb2_A SPBC2 prophage-derived 93.0 0.046 1.6E-06 52.8 3.0 24 477-500 2-25 (173)
243 3kl4_A SRP54, signal recogniti 92.9 0.32 1.1E-05 55.4 10.1 27 475-501 96-122 (433)
244 2hf9_A Probable hydrogenase ni 92.8 0.069 2.4E-06 54.2 4.2 37 464-500 26-62 (226)
245 3goz_A Leucine-rich repeat-con 92.8 0.029 1E-06 61.7 1.4 60 836-896 80-151 (362)
246 1sky_E F1-ATPase, F1-ATP synth 92.8 0.25 8.6E-06 56.7 9.1 89 477-566 152-256 (473)
247 1g5t_A COB(I)alamin adenosyltr 92.8 0.053 1.8E-06 55.1 3.1 116 477-594 29-164 (196)
248 1vma_A Cell division protein F 92.7 0.29 1E-05 53.1 9.2 87 475-564 103-195 (306)
249 1qhx_A CPT, protein (chloramph 92.7 0.052 1.8E-06 53.0 3.0 24 477-500 4-27 (178)
250 3ice_A Transcription terminati 92.7 0.12 4.2E-06 57.8 6.2 97 466-567 163-273 (422)
251 1ly1_A Polynucleotide kinase; 92.6 0.059 2E-06 52.5 3.2 22 477-498 3-24 (181)
252 1zp6_A Hypothetical protein AT 92.4 0.068 2.3E-06 52.8 3.3 26 475-500 8-33 (191)
253 1kag_A SKI, shikimate kinase I 92.2 0.06 2E-06 52.3 2.6 24 477-500 5-28 (173)
254 1kgd_A CASK, peripheral plasma 92.2 0.067 2.3E-06 52.9 3.0 24 477-500 6-29 (180)
255 2ck3_D ATP synthase subunit be 92.2 0.52 1.8E-05 54.1 10.6 64 466-530 142-207 (482)
256 3bh0_A DNAB-like replicative h 92.2 0.27 9.1E-06 53.4 8.0 52 475-530 67-118 (315)
257 2xxa_A Signal recognition part 92.1 0.49 1.7E-05 53.8 10.5 28 474-501 98-125 (433)
258 2wsm_A Hydrogenase expression/ 92.0 0.082 2.8E-06 53.5 3.5 39 462-500 16-54 (221)
259 3goz_A Leucine-rich repeat-con 92.0 0.054 1.9E-06 59.5 2.3 68 832-900 46-126 (362)
260 2orw_A Thymidine kinase; TMTK, 92.0 0.026 8.8E-07 56.6 -0.3 24 477-500 4-27 (184)
261 3vaa_A Shikimate kinase, SK; s 92.0 0.078 2.7E-06 53.3 3.3 26 475-500 24-49 (199)
262 3e70_C DPA, signal recognition 92.0 0.48 1.6E-05 51.9 9.8 28 474-501 127-154 (328)
263 4eun_A Thermoresistant glucoki 91.9 0.082 2.8E-06 53.1 3.3 27 474-500 27-53 (200)
264 3nbx_X ATPase RAVA; AAA+ ATPas 91.9 0.19 6.5E-06 58.3 6.7 44 456-501 23-66 (500)
265 3rfe_A Platelet glycoprotein I 91.8 0.22 7.6E-06 46.9 6.0 53 840-894 12-66 (130)
266 3t61_A Gluconokinase; PSI-biol 91.8 0.07 2.4E-06 53.5 2.6 25 476-500 18-42 (202)
267 3trf_A Shikimate kinase, SK; a 91.8 0.082 2.8E-06 52.0 3.1 25 476-500 5-29 (185)
268 3uie_A Adenylyl-sulfate kinase 91.7 0.092 3.1E-06 52.8 3.4 27 474-500 23-49 (200)
269 3tr0_A Guanylate kinase, GMP k 91.7 0.083 2.9E-06 52.7 3.0 25 476-500 7-31 (205)
270 2yvu_A Probable adenylyl-sulfa 91.6 0.1 3.4E-06 51.6 3.6 27 474-500 11-37 (186)
271 1nks_A Adenylate kinase; therm 91.6 0.085 2.9E-06 51.8 3.0 24 477-500 2-25 (194)
272 2r44_A Uncharacterized protein 91.6 0.081 2.8E-06 57.4 3.0 44 455-500 27-70 (331)
273 3lda_A DNA repair protein RAD5 91.6 0.39 1.3E-05 54.1 8.6 56 476-532 178-237 (400)
274 3tau_A Guanylate kinase, GMP k 91.5 0.1 3.6E-06 52.8 3.6 26 475-500 7-32 (208)
275 1pzn_A RAD51, DNA repair and r 91.4 0.35 1.2E-05 53.3 8.0 45 475-519 130-178 (349)
276 1kht_A Adenylate kinase; phosp 91.4 0.094 3.2E-06 51.5 3.0 24 477-500 4-27 (192)
277 3ogk_B Coronatine-insensitive 91.4 0.063 2.2E-06 62.5 2.0 60 835-896 462-526 (592)
278 3hws_A ATP-dependent CLP prote 91.3 0.15 5.3E-06 56.1 5.0 44 457-500 17-75 (363)
279 1knq_A Gluconate kinase; ALFA/ 91.3 0.1 3.5E-06 50.9 3.2 25 476-500 8-32 (175)
280 2rhm_A Putative kinase; P-loop 91.3 0.1 3.6E-06 51.4 3.3 25 476-500 5-29 (193)
281 3a00_A Guanylate kinase, GMP k 91.3 0.087 3E-06 52.3 2.7 24 477-500 2-25 (186)
282 1uj2_A Uridine-cytidine kinase 91.2 0.11 3.6E-06 54.4 3.4 27 474-500 20-46 (252)
283 1j8m_F SRP54, signal recogniti 91.1 0.79 2.7E-05 49.4 10.3 87 476-564 98-189 (297)
284 3tqc_A Pantothenate kinase; bi 91.1 0.44 1.5E-05 52.0 8.3 43 458-500 70-116 (321)
285 2j41_A Guanylate kinase; GMP, 91.1 0.12 4E-06 51.6 3.4 25 476-500 6-30 (207)
286 2qor_A Guanylate kinase; phosp 91.1 0.096 3.3E-06 52.8 2.8 26 475-500 11-36 (204)
287 3iij_A Coilin-interacting nucl 91.1 0.094 3.2E-06 51.5 2.6 25 476-500 11-35 (180)
288 2bdt_A BH3686; alpha-beta prot 90.9 0.11 3.9E-06 51.3 3.1 22 477-498 3-24 (189)
289 1fx0_B ATP synthase beta chain 90.9 0.51 1.7E-05 54.4 8.9 63 467-530 155-219 (498)
290 1tev_A UMP-CMP kinase; ploop, 90.9 0.12 4E-06 50.9 3.2 25 476-500 3-27 (196)
291 3rw6_A Nuclear RNA export fact 90.9 0.13 4.3E-06 54.9 3.6 58 833-890 193-258 (267)
292 1gvn_B Zeta; postsegregational 90.9 0.19 6.5E-06 53.9 5.0 26 475-500 32-57 (287)
293 3jvv_A Twitching mobility prot 90.9 0.1 3.5E-06 58.0 3.0 113 475-596 122-234 (356)
294 3asz_A Uridine kinase; cytidin 90.8 0.12 4E-06 52.1 3.2 26 475-500 5-30 (211)
295 2jaq_A Deoxyguanosine kinase; 90.8 0.11 3.8E-06 51.5 3.0 23 478-500 2-24 (205)
296 1uf9_A TT1252 protein; P-loop, 90.7 0.13 4.5E-06 51.1 3.4 26 474-499 6-31 (203)
297 1z7x_W Ribonuclease inhibitor; 90.7 0.051 1.7E-06 61.2 0.3 62 835-897 255-327 (461)
298 1ukz_A Uridylate kinase; trans 90.7 0.13 4.6E-06 51.3 3.4 27 474-500 13-39 (203)
299 2ffh_A Protein (FFH); SRP54, s 90.7 0.38 1.3E-05 54.6 7.5 27 475-501 97-123 (425)
300 4a1f_A DNAB helicase, replicat 90.6 0.42 1.4E-05 52.7 7.5 51 476-530 46-96 (338)
301 1cke_A CK, MSSA, protein (cyti 90.6 0.12 4E-06 52.6 3.0 24 477-500 6-29 (227)
302 1um8_A ATP-dependent CLP prote 90.6 0.21 7.1E-06 55.3 5.2 25 476-500 72-96 (376)
303 2if2_A Dephospho-COA kinase; a 90.5 0.12 4E-06 51.8 2.8 22 477-498 2-23 (204)
304 2c95_A Adenylate kinase 1; tra 90.5 0.13 4.3E-06 50.9 3.0 26 475-500 8-33 (196)
305 1via_A Shikimate kinase; struc 90.5 0.11 3.8E-06 50.7 2.6 24 477-500 5-28 (175)
306 1ex7_A Guanylate kinase; subst 90.5 0.11 3.7E-06 52.4 2.5 24 477-500 2-25 (186)
307 4gp7_A Metallophosphoesterase; 90.4 0.13 4.3E-06 50.6 2.9 22 476-497 9-30 (171)
308 1jjv_A Dephospho-COA kinase; P 90.4 0.13 4.6E-06 51.5 3.2 22 477-498 3-24 (206)
309 2iyv_A Shikimate kinase, SK; t 90.4 0.11 3.7E-06 51.2 2.4 24 477-500 3-26 (184)
310 1zuh_A Shikimate kinase; alpha 90.4 0.13 4.4E-06 49.8 3.0 26 475-500 6-31 (168)
311 2vli_A Antibiotic resistance p 90.4 0.11 3.7E-06 50.8 2.4 25 476-500 5-29 (183)
312 2ze6_A Isopentenyl transferase 90.4 0.12 4.2E-06 54.2 2.9 24 477-500 2-25 (253)
313 2qt1_A Nicotinamide riboside k 90.4 0.14 4.9E-06 51.4 3.3 26 475-500 20-45 (207)
314 1lvg_A Guanylate kinase, GMP k 90.4 0.11 3.9E-06 52.3 2.5 24 477-500 5-28 (198)
315 2ga8_A Hypothetical 39.9 kDa p 90.3 0.24 8.2E-06 54.9 5.3 42 459-500 3-48 (359)
316 1odf_A YGR205W, hypothetical 3 90.3 0.25 8.7E-06 53.1 5.4 27 474-500 29-55 (290)
317 2bwj_A Adenylate kinase 5; pho 90.2 0.13 4.5E-06 50.9 2.9 25 476-500 12-36 (199)
318 2bbw_A Adenylate kinase 4, AK4 90.2 0.14 4.8E-06 53.1 3.2 26 475-500 26-51 (246)
319 1e6c_A Shikimate kinase; phosp 90.2 0.12 4.2E-06 50.0 2.5 24 477-500 3-26 (173)
320 3cm0_A Adenylate kinase; ATP-b 90.1 0.15 5.1E-06 50.1 3.2 24 477-500 5-28 (186)
321 1ye8_A Protein THEP1, hypothet 90.1 0.14 4.9E-06 50.9 3.0 24 478-501 2-25 (178)
322 1qf9_A UMP/CMP kinase, protein 90.1 0.15 5E-06 50.1 3.0 25 476-500 6-30 (194)
323 2plr_A DTMP kinase, probable t 90.1 0.16 5.4E-06 50.8 3.3 24 477-500 5-28 (213)
324 2p5t_B PEZT; postsegregational 90.0 0.21 7.3E-06 52.2 4.4 26 475-500 31-56 (253)
325 1y63_A LMAJ004144AAA protein; 90.0 0.16 5.6E-06 50.2 3.3 25 475-499 9-33 (184)
326 3cf2_A TER ATPase, transitiona 89.9 0.51 1.8E-05 57.7 8.2 91 455-566 477-581 (806)
327 2pbr_A DTMP kinase, thymidylat 89.7 0.16 5.5E-06 49.9 3.0 23 478-500 2-24 (195)
328 3a4m_A L-seryl-tRNA(SEC) kinas 89.7 0.17 5.7E-06 53.3 3.3 24 476-499 4-27 (260)
329 1z7x_W Ribonuclease inhibitor; 89.7 0.078 2.7E-06 59.6 0.8 60 837-897 86-156 (461)
330 1znw_A Guanylate kinase, GMP k 89.5 0.17 5.7E-06 51.2 3.0 26 475-500 19-44 (207)
331 2pt5_A Shikimate kinase, SK; a 89.5 0.18 6E-06 48.7 3.0 23 478-500 2-24 (168)
332 2jeo_A Uridine-cytidine kinase 89.4 0.19 6.6E-06 52.2 3.5 25 475-499 24-48 (245)
333 3l0o_A Transcription terminati 89.4 0.9 3.1E-05 50.9 8.9 51 466-517 164-216 (427)
334 3umf_A Adenylate kinase; rossm 89.3 0.17 5.7E-06 52.3 2.9 27 474-500 27-53 (217)
335 1ls1_A Signal recognition part 89.3 0.61 2.1E-05 50.2 7.4 27 475-501 97-123 (295)
336 3cmu_A Protein RECA, recombina 89.2 0.49 1.7E-05 63.0 7.8 84 475-565 1426-1515(2050)
337 2j37_W Signal recognition part 89.2 1.3 4.3E-05 51.4 10.5 26 475-500 100-125 (504)
338 4a74_A DNA repair and recombin 89.2 0.45 1.5E-05 48.0 6.0 42 476-517 25-70 (231)
339 3tlx_A Adenylate kinase 2; str 89.2 0.3 1E-05 50.9 4.7 27 474-500 27-53 (243)
340 2wwf_A Thymidilate kinase, put 89.2 0.19 6.4E-06 50.4 3.0 25 476-500 10-34 (212)
341 3ney_A 55 kDa erythrocyte memb 89.1 0.18 6.2E-06 51.3 2.9 26 475-500 18-43 (197)
342 1nn5_A Similar to deoxythymidy 89.1 0.19 6.4E-06 50.4 3.0 25 476-500 9-33 (215)
343 2cdn_A Adenylate kinase; phosp 89.1 0.19 6.3E-06 50.3 3.0 26 475-500 19-44 (201)
344 1z6g_A Guanylate kinase; struc 89.0 0.16 5.6E-06 51.9 2.6 26 475-500 22-47 (218)
345 2z0h_A DTMP kinase, thymidylat 88.9 0.2 6.7E-06 49.5 3.0 23 478-500 2-24 (197)
346 3aez_A Pantothenate kinase; tr 88.9 0.22 7.5E-06 54.2 3.5 27 474-500 88-114 (312)
347 2v54_A DTMP kinase, thymidylat 88.9 0.22 7.7E-06 49.5 3.4 25 476-500 4-28 (204)
348 1zd8_A GTP:AMP phosphotransfer 88.8 0.19 6.4E-06 51.5 2.8 25 476-500 7-31 (227)
349 3dl0_A Adenylate kinase; phosp 88.7 0.2 6.8E-06 50.7 2.9 23 478-500 2-24 (216)
350 3fb4_A Adenylate kinase; psych 88.7 0.19 6.6E-06 50.6 2.8 23 478-500 2-24 (216)
351 2r9v_A ATP synthase subunit al 88.6 0.71 2.4E-05 53.3 7.6 96 467-566 165-278 (515)
352 2v3c_C SRP54, signal recogniti 88.6 0.32 1.1E-05 55.3 4.8 26 475-500 98-123 (432)
353 2ehv_A Hypothetical protein PH 88.4 0.21 7.3E-06 51.2 2.9 24 475-498 29-52 (251)
354 3lnc_A Guanylate kinase, GMP k 88.4 0.18 6E-06 51.8 2.3 25 476-500 27-52 (231)
355 3fwy_A Light-independent proto 88.4 0.23 7.9E-06 54.1 3.3 27 474-500 46-72 (314)
356 1tue_A Replication protein E1; 88.3 0.3 1E-05 50.1 3.9 37 464-500 45-82 (212)
357 1aky_A Adenylate kinase; ATP:A 88.3 0.24 8.1E-06 50.4 3.2 25 476-500 4-28 (220)
358 4e22_A Cytidylate kinase; P-lo 88.3 0.22 7.4E-06 52.2 2.9 26 475-500 26-51 (252)
359 1s96_A Guanylate kinase, GMP k 88.2 0.23 7.9E-06 51.1 3.0 26 475-500 15-40 (219)
360 1gtv_A TMK, thymidylate kinase 88.2 0.12 4.1E-06 51.9 0.9 23 478-500 2-24 (214)
361 1xjc_A MOBB protein homolog; s 88.1 0.25 8.4E-06 49.0 3.1 26 475-500 3-28 (169)
362 3vr4_D V-type sodium ATPase su 88.1 0.59 2E-05 53.3 6.5 98 467-566 141-259 (465)
363 3p32_A Probable GTPase RV1496/ 88.0 0.44 1.5E-05 52.5 5.4 37 464-500 65-103 (355)
364 1zak_A Adenylate kinase; ATP:A 88.0 0.22 7.6E-06 50.6 2.8 25 476-500 5-29 (222)
365 1zu4_A FTSY; GTPase, signal re 88.0 0.94 3.2E-05 49.3 7.9 28 474-501 103-130 (320)
366 1vht_A Dephospho-COA kinase; s 88.0 0.29 9.8E-06 49.6 3.5 23 476-498 4-26 (218)
367 2grj_A Dephospho-COA kinase; T 88.0 0.26 8.8E-06 49.7 3.1 25 475-499 11-35 (192)
368 2qe7_A ATP synthase subunit al 87.9 1.5 5.1E-05 50.6 9.7 96 467-566 152-265 (502)
369 2pez_A Bifunctional 3'-phospho 87.9 0.27 9.1E-06 48.2 3.1 25 476-500 5-29 (179)
370 1htw_A HI0065; nucleotide-bind 87.9 0.27 9.3E-06 48.0 3.1 26 475-500 32-57 (158)
371 2p1m_B Transport inhibitor res 87.7 0.072 2.5E-06 62.0 -1.3 59 834-894 128-195 (594)
372 2ra8_A Uncharacterized protein 87.7 0.1 3.5E-06 58.0 -0.0 61 834-896 250-320 (362)
373 1rj9_A FTSY, signal recognitio 87.6 0.27 9.3E-06 53.3 3.2 26 475-500 101-126 (304)
374 3ake_A Cytidylate kinase; CMP 87.5 0.27 9.3E-06 48.9 3.0 23 478-500 4-26 (208)
375 3k1j_A LON protease, ATP-depen 87.4 0.28 9.7E-06 58.1 3.6 44 455-500 41-84 (604)
376 2f6r_A COA synthase, bifunctio 87.3 0.29 1E-05 52.2 3.3 23 475-497 74-96 (281)
377 4akg_A Glutathione S-transfera 87.3 3.6 0.00012 56.7 14.3 79 477-565 1268-1346(2695)
378 1m7g_A Adenylylsulfate kinase; 87.3 0.32 1.1E-05 49.1 3.4 27 474-500 23-49 (211)
379 2ged_A SR-beta, signal recogni 87.3 0.57 1.9E-05 45.8 5.1 26 475-500 47-72 (193)
380 2p1m_B Transport inhibitor res 87.2 0.13 4.3E-06 59.9 0.4 61 835-895 455-518 (594)
381 1sq5_A Pantothenate kinase; P- 87.1 0.51 1.7E-05 51.0 5.1 27 474-500 78-104 (308)
382 1g41_A Heat shock protein HSLU 87.1 0.34 1.1E-05 55.3 3.8 45 456-500 16-74 (444)
383 3gqb_B V-type ATP synthase bet 87.1 0.7 2.4E-05 52.8 6.3 100 467-566 137-262 (464)
384 2dyk_A GTP-binding protein; GT 87.1 0.35 1.2E-05 45.5 3.4 24 477-500 2-25 (161)
385 2i3b_A HCR-ntpase, human cance 86.8 0.28 9.5E-06 49.3 2.6 23 478-500 3-25 (189)
386 3end_A Light-independent proto 86.8 0.46 1.6E-05 50.9 4.5 41 474-516 39-79 (307)
387 1a7j_A Phosphoribulokinase; tr 86.7 0.27 9.4E-06 52.8 2.7 26 475-500 4-29 (290)
388 1q57_A DNA primase/helicase; d 86.5 0.96 3.3E-05 52.2 7.3 52 476-530 242-293 (503)
389 1oix_A RAS-related protein RAB 86.5 0.33 1.1E-05 48.0 3.0 25 476-500 29-53 (191)
390 3tif_A Uncharacterized ABC tra 86.4 0.32 1.1E-05 50.6 2.8 35 475-512 30-64 (235)
391 3b9q_A Chloroplast SRP recepto 86.4 0.37 1.3E-05 52.2 3.4 26 475-500 99-124 (302)
392 2c61_A A-type ATP synthase non 86.4 0.83 2.8E-05 52.3 6.5 100 467-566 142-260 (469)
393 1np6_A Molybdopterin-guanine d 86.3 0.36 1.2E-05 47.9 3.1 25 476-500 6-30 (174)
394 3b85_A Phosphate starvation-in 86.3 0.33 1.1E-05 49.5 2.9 23 477-499 23-45 (208)
395 2zej_A Dardarin, leucine-rich 86.2 0.31 1.1E-05 47.7 2.5 22 478-499 4-25 (184)
396 3un9_A NLR family member X1; l 86.2 0.19 6.3E-06 56.0 1.0 62 833-896 180-252 (372)
397 2yhs_A FTSY, cell division pro 86.2 0.59 2E-05 54.0 5.1 26 475-500 292-317 (503)
398 2wji_A Ferrous iron transport 86.2 0.38 1.3E-05 46.1 3.1 23 477-499 4-26 (165)
399 2onk_A Molybdate/tungstate ABC 86.1 0.36 1.2E-05 50.4 3.1 26 474-500 23-48 (240)
400 3un9_A NLR family member X1; l 86.1 0.15 5.3E-06 56.6 0.3 33 835-867 210-248 (372)
401 2pcj_A ABC transporter, lipopr 86.1 0.32 1.1E-05 50.1 2.7 34 476-512 30-63 (224)
402 1moz_A ARL1, ADP-ribosylation 86.1 0.43 1.5E-05 46.1 3.5 34 466-499 7-41 (183)
403 3nwj_A ATSK2; P loop, shikimat 86.0 0.32 1.1E-05 51.2 2.6 25 476-500 48-72 (250)
404 2f9l_A RAB11B, member RAS onco 86.0 0.35 1.2E-05 48.0 2.8 24 477-500 6-29 (199)
405 3sr0_A Adenylate kinase; phosp 85.9 0.32 1.1E-05 49.6 2.5 23 478-500 2-24 (206)
406 1ltq_A Polynucleotide kinase; 85.9 0.38 1.3E-05 51.2 3.2 23 477-499 3-25 (301)
407 3d3q_A TRNA delta(2)-isopenten 85.8 0.37 1.3E-05 53.1 3.1 24 477-500 8-31 (340)
408 2xb4_A Adenylate kinase; ATP-b 85.8 0.38 1.3E-05 49.2 3.0 23 478-500 2-24 (223)
409 3cmu_A Protein RECA, recombina 85.7 1.1 3.7E-05 59.9 7.8 85 475-566 382-472 (2050)
410 1e4v_A Adenylate kinase; trans 85.7 0.36 1.2E-05 48.8 2.8 23 478-500 2-24 (214)
411 2r6a_A DNAB helicase, replicat 85.5 1.1 3.7E-05 51.1 7.0 51 475-528 202-252 (454)
412 1ak2_A Adenylate kinase isoenz 85.4 0.44 1.5E-05 48.9 3.4 25 476-500 16-40 (233)
413 4eaq_A DTMP kinase, thymidylat 85.4 0.65 2.2E-05 48.0 4.6 27 475-501 25-51 (229)
414 1b0u_A Histidine permease; ABC 85.4 0.37 1.3E-05 50.9 2.8 35 475-512 31-65 (262)
415 2ce2_X GTPase HRAS; signaling 85.4 0.38 1.3E-05 45.1 2.6 23 478-500 5-27 (166)
416 1yrb_A ATP(GTP)binding protein 85.4 0.44 1.5E-05 49.4 3.3 26 475-500 13-38 (262)
417 3be4_A Adenylate kinase; malar 85.4 0.38 1.3E-05 48.9 2.8 24 477-500 6-29 (217)
418 2cbz_A Multidrug resistance-as 85.4 0.38 1.3E-05 50.0 2.8 26 475-500 30-55 (237)
419 2r8r_A Sensor protein; KDPD, P 85.3 0.22 7.6E-06 51.7 1.0 24 478-501 8-31 (228)
420 2dr3_A UPF0273 protein PH0284; 85.3 0.44 1.5E-05 48.6 3.3 39 476-516 23-61 (247)
421 4gzl_A RAS-related C3 botulinu 85.3 0.43 1.5E-05 47.6 3.1 42 459-500 13-54 (204)
422 2f1r_A Molybdopterin-guanine d 85.3 0.22 7.6E-06 49.3 0.9 25 477-501 3-27 (171)
423 3gfo_A Cobalt import ATP-bindi 85.2 0.38 1.3E-05 51.3 2.8 25 476-500 34-58 (275)
424 2q6t_A DNAB replication FORK h 85.2 1.4 4.8E-05 50.0 7.7 52 476-530 200-251 (444)
425 3oaa_A ATP synthase subunit al 85.1 2 6.8E-05 49.5 8.8 97 467-566 152-265 (513)
426 1z2a_A RAS-related protein RAB 85.1 0.44 1.5E-05 45.1 2.9 24 477-500 6-29 (168)
427 3cmw_A Protein RECA, recombina 85.1 1 3.5E-05 59.2 7.2 84 475-565 382-471 (1706)
428 1ji0_A ABC transporter; ATP bi 85.0 0.41 1.4E-05 49.9 2.8 34 476-512 32-65 (240)
429 2wjg_A FEOB, ferrous iron tran 85.0 0.45 1.6E-05 46.2 3.1 23 477-499 8-30 (188)
430 3r20_A Cytidylate kinase; stru 85.0 0.43 1.5E-05 49.8 3.0 25 476-500 9-33 (233)
431 1g6h_A High-affinity branched- 85.0 0.41 1.4E-05 50.4 2.8 25 476-500 33-57 (257)
432 1fzq_A ADP-ribosylation factor 84.9 0.57 1.9E-05 45.7 3.7 26 474-499 14-39 (181)
433 3zvl_A Bifunctional polynucleo 84.9 0.47 1.6E-05 53.6 3.5 27 474-500 256-282 (416)
434 1zj6_A ADP-ribosylation factor 84.9 0.71 2.4E-05 45.0 4.4 35 465-500 6-40 (187)
435 2nzj_A GTP-binding protein REM 84.9 0.42 1.4E-05 45.6 2.7 24 477-500 5-28 (175)
436 4g1u_C Hemin import ATP-bindin 84.9 0.42 1.4E-05 50.7 2.9 26 475-500 36-61 (266)
437 2d2e_A SUFC protein; ABC-ATPas 84.7 0.44 1.5E-05 49.9 2.9 24 476-499 29-52 (250)
438 3crm_A TRNA delta(2)-isopenten 84.7 0.45 1.5E-05 52.0 3.1 24 477-500 6-29 (323)
439 1mv5_A LMRA, multidrug resista 84.6 0.45 1.5E-05 49.6 3.0 26 475-500 27-52 (243)
440 2pze_A Cystic fibrosis transme 84.5 0.44 1.5E-05 49.3 2.8 26 475-500 33-58 (229)
441 2og2_A Putative signal recogni 84.5 0.5 1.7E-05 52.4 3.4 26 475-500 156-181 (359)
442 2olj_A Amino acid ABC transpor 84.5 0.43 1.5E-05 50.5 2.8 26 475-500 49-74 (263)
443 3cmw_A Protein RECA, recombina 84.4 1 3.5E-05 59.2 6.8 83 476-565 1431-1519(1706)
444 2ff7_A Alpha-hemolysin translo 84.4 0.45 1.5E-05 49.9 2.8 25 476-500 35-59 (247)
445 3a8t_A Adenylate isopentenyltr 84.4 0.5 1.7E-05 52.0 3.3 25 476-500 40-64 (339)
446 1u8z_A RAS-related protein RAL 84.4 0.49 1.7E-05 44.5 2.9 24 477-500 5-28 (168)
447 1sgw_A Putative ABC transporte 84.4 0.4 1.4E-05 49.2 2.4 25 476-500 35-59 (214)
448 3io3_A DEHA2D07832P; chaperone 84.3 0.81 2.8E-05 50.5 5.0 53 469-521 11-63 (348)
449 2zu0_C Probable ATP-dependent 84.3 0.46 1.6E-05 50.3 2.9 25 475-499 45-69 (267)
450 3con_A GTPase NRAS; structural 84.3 0.49 1.7E-05 46.1 2.9 24 477-500 22-45 (190)
451 3exa_A TRNA delta(2)-isopenten 84.3 0.52 1.8E-05 51.4 3.3 25 476-500 3-27 (322)
452 3vr4_A V-type sodium ATPase ca 84.2 2 6.9E-05 50.2 8.3 58 466-527 221-280 (600)
453 3f9v_A Minichromosome maintena 84.2 0.42 1.4E-05 56.6 2.8 46 455-500 295-351 (595)
454 1vpl_A ABC transporter, ATP-bi 84.1 0.46 1.6E-05 50.1 2.8 26 475-500 40-65 (256)
455 2ixe_A Antigen peptide transpo 84.1 0.47 1.6E-05 50.5 2.8 26 475-500 44-69 (271)
456 3hjn_A DTMP kinase, thymidylat 84.1 0.99 3.4E-05 45.5 5.1 24 478-501 2-25 (197)
457 2ck3_A ATP synthase subunit al 84.1 2.3 7.8E-05 49.1 8.7 100 467-566 152-273 (510)
458 1fx0_A ATP synthase alpha chai 84.1 1.3 4.5E-05 51.1 6.7 84 477-566 164-266 (507)
459 1nlf_A Regulatory protein REPA 84.0 0.45 1.5E-05 50.3 2.7 25 476-500 30-54 (279)
460 2lkc_A Translation initiation 84.0 0.63 2.2E-05 44.6 3.5 26 475-500 7-32 (178)
461 2ghi_A Transport protein; mult 83.9 0.48 1.6E-05 50.0 2.8 26 475-500 45-70 (260)
462 1ek0_A Protein (GTP-binding pr 83.9 0.53 1.8E-05 44.5 2.9 23 478-500 5-27 (170)
463 2vp4_A Deoxynucleoside kinase; 83.8 0.51 1.7E-05 48.5 2.9 25 475-499 19-43 (230)
464 1kao_A RAP2A; GTP-binding prot 83.8 0.54 1.8E-05 44.2 2.9 23 478-500 5-27 (167)
465 1z08_A RAS-related protein RAB 83.8 0.53 1.8E-05 44.7 2.8 24 477-500 7-30 (170)
466 1c1y_A RAS-related protein RAP 83.7 0.53 1.8E-05 44.4 2.8 23 478-500 5-27 (167)
467 1z0j_A RAB-22, RAS-related pro 83.7 0.54 1.9E-05 44.5 2.9 23 478-500 8-30 (170)
468 2erx_A GTP-binding protein DI- 83.7 0.53 1.8E-05 44.6 2.8 22 478-499 5-26 (172)
469 2yz2_A Putative ABC transporte 83.6 0.5 1.7E-05 50.0 2.8 26 475-500 32-57 (266)
470 3lv8_A DTMP kinase, thymidylat 83.6 0.97 3.3E-05 47.1 5.0 31 476-507 27-57 (236)
471 2qi9_C Vitamin B12 import ATP- 83.6 0.51 1.7E-05 49.6 2.8 25 476-500 26-50 (249)
472 1ky3_A GTP-binding protein YPT 83.5 0.55 1.9E-05 45.0 2.9 26 475-500 7-32 (182)
473 3q72_A GTP-binding protein RAD 83.5 0.46 1.6E-05 45.0 2.3 22 478-499 4-25 (166)
474 2nq2_C Hypothetical ABC transp 83.5 0.52 1.8E-05 49.6 2.9 25 476-500 31-55 (253)
475 3iqw_A Tail-anchored protein t 83.4 0.94 3.2E-05 49.7 5.0 50 470-521 10-59 (334)
476 1q3t_A Cytidylate kinase; nucl 83.4 0.62 2.1E-05 47.9 3.4 26 475-500 15-40 (236)
477 2ihy_A ABC transporter, ATP-bi 83.4 0.51 1.8E-05 50.4 2.8 26 475-500 46-71 (279)
478 1nrj_B SR-beta, signal recogni 83.3 0.68 2.3E-05 46.3 3.6 26 475-500 11-36 (218)
479 2eyu_A Twitching motility prot 83.2 0.58 2E-05 49.5 3.1 112 474-594 23-134 (261)
480 1cr0_A DNA primase/helicase; R 83.2 0.52 1.8E-05 50.2 2.8 39 475-514 34-72 (296)
481 1f6b_A SAR1; gtpases, N-termin 83.2 0.75 2.6E-05 45.7 3.8 25 475-499 24-48 (198)
482 3foz_A TRNA delta(2)-isopenten 83.1 0.59 2E-05 50.8 3.2 26 475-500 9-34 (316)
483 1svi_A GTP-binding protein YSX 83.0 0.64 2.2E-05 45.4 3.2 26 475-500 22-47 (195)
484 3sop_A Neuronal-specific septi 83.0 0.55 1.9E-05 49.9 2.8 23 478-500 4-26 (270)
485 1r8s_A ADP-ribosylation factor 82.9 0.57 2E-05 44.2 2.7 22 479-500 3-24 (164)
486 2v9p_A Replication protein E1; 82.8 0.58 2E-05 50.7 3.0 27 474-500 124-150 (305)
487 3mfy_A V-type ATP synthase alp 82.8 2.2 7.4E-05 49.8 7.8 57 467-527 217-275 (588)
488 1wms_A RAB-9, RAB9, RAS-relate 82.8 0.62 2.1E-05 44.6 2.9 24 477-500 8-31 (177)
489 1m7b_A RND3/RHOE small GTP-bin 82.8 0.56 1.9E-05 45.7 2.6 24 477-500 8-31 (184)
490 2hxs_A RAB-26, RAS-related pro 82.8 0.62 2.1E-05 44.6 2.9 24 477-500 7-30 (178)
491 1r2q_A RAS-related protein RAB 82.8 0.63 2.1E-05 43.9 2.9 22 478-499 8-29 (170)
492 2gj8_A MNME, tRNA modification 82.8 0.57 1.9E-05 45.4 2.7 24 477-500 5-28 (172)
493 4tmk_A Protein (thymidylate ki 82.8 1.2 4E-05 45.7 5.1 52 477-529 4-55 (213)
494 2ocp_A DGK, deoxyguanosine kin 82.8 0.62 2.1E-05 48.0 3.1 25 476-500 2-26 (241)
495 2fn4_A P23, RAS-related protei 82.7 0.57 1.9E-05 44.9 2.6 25 476-500 9-33 (181)
496 1g16_A RAS-related protein SEC 82.6 0.6 2.1E-05 44.2 2.7 24 477-500 4-27 (170)
497 3tw8_B RAS-related protein RAB 82.5 0.58 2E-05 44.8 2.6 25 476-500 9-33 (181)
498 1z0f_A RAB14, member RAS oncog 82.5 0.65 2.2E-05 44.4 2.9 25 476-500 15-39 (179)
499 2cxx_A Probable GTP-binding pr 82.5 0.56 1.9E-05 45.5 2.5 23 478-500 3-25 (190)
500 2qmh_A HPR kinase/phosphorylas 82.5 0.7 2.4E-05 47.1 3.2 25 476-500 34-58 (205)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.9e-45 Score=433.85 Aligned_cols=306 Identities=13% Similarity=0.160 Sum_probs=250.4
Q ss_pred cchHHHHHHHHHhhcCC---CceEEEEecCCCCChhhHHHHHhh--cccccccccEEEEeeccccC--cHHHHHHHHHHh
Q 047071 458 RSTERTVLKILQCISGV---EAGKIGIHGISGIGKTTVLKALIS--YPKTKLIFDVIILVTVSRYW--SVRKIQNDVLRQ 530 (902)
Q Consensus 458 VGRe~ele~L~~~L~~~---~~~VI~IvG~GGVGKTTLA~~vy~--d~~vr~~Fd~i~WV~vs~~~--~~~~ll~~Il~~ 530 (902)
|||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 79999999999999643 689999999999999999999998 67889999999999999885 899999999999
Q ss_pred cCcCCC-------CCCcchhhHHHHHhhhcCc-eeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcccccC-c
Q 047071 531 LPLYCE-------DSEADSDVAEKLFHFLNGK-KFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLEMD-A 601 (902)
Q Consensus 531 L~~~~~-------~~~~~~~l~~~L~~~L~~k-r~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~-~ 601 (902)
++.... ...+...+...+++.|+++ |+||||||||+.+++ .+. ..+||+||||||+..++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 876521 1123345688999999996 999999999998765 221 127999999999999988775 4
Q ss_pred ceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhHhhHhhhhhccccc
Q 047071 602 SKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEHTSKLFSKSIANAT 681 (902)
Q Consensus 602 ~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~~~~~ 681 (902)
..+|+|++|+.++||+||.+.+|.....+.+.+++.+|+++|+|+||||+++|+.|+.+ .|... +.+....+...
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l~~~~ 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKLESRG 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHHHHHC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHhhccc
Confidence 46899999999999999999998743346677899999999999999999999999874 25443 34444433323
Q ss_pred hHHHHHHhhhccccCCchhHHHHHH-----------hhccCCCCcccchhhhhhhhccc--cccccc--ccchHHHHHHH
Q 047071 682 IEEVIQLLKFSFDQLKDFDTKSCLL-----------YSSLFPEDKEVNVFEFIENCIHE--GVIAGS--LGDARKRGQDI 746 (902)
Q Consensus 682 ~~~v~~iL~lSYd~Lp~~~lK~cfL-----------~lAlFP~~~~I~~~~LI~lWiAe--G~i~~~--~~~~e~~~~~~ 746 (902)
...+..++.+||+.||+ +++.||+ |||+||+++.|+ +..|+++ ||+... ....++.++ +
T Consensus 360 ~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~ 433 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-R 433 (549)
T ss_dssp SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-H
T ss_pred HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-H
Confidence 45688899999999999 8999999 999999999999 7899999 999765 334556666 9
Q ss_pred HHHHHhcccccccc--CCCcccchHHHHHHHHHHhc
Q 047071 747 IDILVGASLLQVTE--AGDSIKMHDLIRDLALGILS 780 (902)
Q Consensus 747 L~~Lv~rSLLq~~~--~~~~y~MHdLVrdla~~i~~ 780 (902)
|++|+++|||+... ...+|+|||+||+||++++.
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 99999999999864 34579999999999999987
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-36 Score=388.36 Aligned_cols=304 Identities=19% Similarity=0.248 Sum_probs=251.6
Q ss_pred ccccchHHHHHHHHHhhc--CCCceEEEEecCCCCChhhHHHHHhhcccc-cc-cccEEEEeeccccC--cHHHHHHHHH
Q 047071 455 FVSRSTERTVLKILQCIS--GVEAGKIGIHGISGIGKTTVLKALISYPKT-KL-IFDVIILVTVSRYW--SVRKIQNDVL 528 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~--~~~~~VI~IvG~GGVGKTTLA~~vy~d~~v-r~-~Fd~i~WV~vs~~~--~~~~ll~~Il 528 (902)
..+|||+.++++|.++|. +++.++|+|+||||+||||||+++|++.++ .. .|+.++|++++... +....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 346999999999999995 357899999999999999999999988643 34 44788899998854 3455566777
Q ss_pred HhcCcCC----CCCCcchhhHHHHHhhhcCc--eeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcccc-cCc
Q 047071 529 RQLPLYC----EDSEADSDVAEKLFHFLNGK--KFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLE-MDA 601 (902)
Q Consensus 529 ~~L~~~~----~~~~~~~~l~~~L~~~L~~k--r~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~-~~~ 601 (902)
..+.... ....+.+.+...++..+.++ |+||||||||+..+|..+ ++||+||||||++.++.. .+.
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSC
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCC
Confidence 7765443 22345677788888888777 999999999999888775 578999999999999843 456
Q ss_pred ceeEEecc-cCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhHhhHhhhhhcccc
Q 047071 602 SKLIEVET-VSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEHTSKLFSKSIANA 680 (902)
Q Consensus 602 ~~~~~L~~-Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~~~~ 680 (902)
...+++++ |+++++++||...++. ..+.+.+++++|+++|+|+||||+++|++|+.+. ..|...++.+....+..
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhh
Confidence 77899996 9999999999998864 3456678899999999999999999999998754 46888888876554221
Q ss_pred -------chHHHHHHhhhccccCCchhHHHHHHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHHHHHhc
Q 047071 681 -------TIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIIDILVGA 753 (902)
Q Consensus 681 -------~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~~Lv~r 753 (902)
....+..+|.+||+.||+ ++|.||++||+||+++.|+++.++.+|.++ ++.++++|++|+++
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------TEEVEDILQEFVNK 421 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------HHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------HHHHHHHHHHHHhc
Confidence 136799999999999999 899999999999999999999999999665 36778999999999
Q ss_pred cccccccCCC--cccchHHHHHHHHHHhc
Q 047071 754 SLLQVTEAGD--SIKMHDLIRDLALGILS 780 (902)
Q Consensus 754 SLLq~~~~~~--~y~MHdLVrdla~~i~~ 780 (902)
|||+...... +|+||++||+|++..+.
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred cceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 9999764322 59999999999999876
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1e-36 Score=371.22 Aligned_cols=283 Identities=16% Similarity=0.154 Sum_probs=232.1
Q ss_pred ccchHHHHHHHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccE-EEEeeccccCcHHHHHHHHHHhcCcC
Q 047071 457 SRSTERTVLKILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDV-IILVTVSRYWSVRKIQNDVLRQLPLY 534 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~-i~WV~vs~~~~~~~ll~~Il~~L~~~ 534 (902)
.|||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..+...
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 39999999999999975 56899999999999999999999998888999986 99999999999888888877754321
Q ss_pred C---C-C-------CCcchhhHHHHHhhh---cCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcccccC
Q 047071 535 C---E-D-------SEADSDVAEKLFHFL---NGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLEMD 600 (902)
Q Consensus 535 ~---~-~-------~~~~~~l~~~L~~~L---~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~ 600 (902)
. . . ..+.+.+...+++.| .++|+||||||||+.++|+.+. +||+||||||++.++..+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 1 0 0 012344556666655 6899999999999999998762 6899999999999875444
Q ss_pred cceeEEec------ccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccc-hhhhhhHhhHhh
Q 047071 601 ASKLIEVE------TVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEEN-NVLVWEHTSKLF 673 (902)
Q Consensus 601 ~~~~~~L~------~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~-~~~~W~~~l~~l 673 (902)
....+.|+ +|+.+|||+||....+. . ..++..+| |+|+||||+++|++|+.+. +..+|...
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDC-R----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCC-C----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCC-C----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 44456777 99999999999998532 1 33445444 9999999999999999863 66778653
Q ss_pred hhhccccchHHHHHHhhhccccCCchhH-HHHHHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHHHHHh
Q 047071 674 SKSIANATIEEVIQLLKFSFDQLKDFDT-KSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIIDILVG 752 (902)
Q Consensus 674 ~~~~~~~~~~~v~~iL~lSYd~Lp~~~l-K~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~~Lv~ 752 (902)
....+..+|.+||+.||+ +. |+||++||+||+++.|+.+.++.+|+++| ++.+..+|++|++
T Consensus 351 -------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------eedAe~~L~eLvd 413 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------KSDVMVVVNKLHK 413 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---------SHHHHHHHHHHHT
T ss_pred -------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---------HHHHHHHHHHHHh
Confidence 136799999999999999 78 99999999999999999999999999887 1357889999999
Q ss_pred ccccccccCCCcccchHHHHHHH
Q 047071 753 ASLLQVTEAGDSIKMHDLIRDLA 775 (902)
Q Consensus 753 rSLLq~~~~~~~y~MHdLVrdla 775 (902)
+|||+......+|+||||+++++
T Consensus 414 RSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 414 YSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSSSBCSSSSEEBCCCHHHHHH
T ss_pred hCCEEEeCCCCEEEehHHHHHHh
Confidence 99999865567899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=331.72 Aligned_cols=302 Identities=21% Similarity=0.243 Sum_probs=238.6
Q ss_pred ccccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcccc-cccc-cEEEEeeccccCcHHHHHH---HH
Q 047071 455 FVSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYPKT-KLIF-DVIILVTVSRYWSVRKIQN---DV 527 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~v-r~~F-d~i~WV~vs~~~~~~~ll~---~I 527 (902)
..+|||+.++++|.+.|.. ++.++|+|+||||+||||||.+++++.++ +.+| +.++|++++.. +...++. .+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 4579999999999999974 56789999999999999999999998766 7789 58999998765 2333333 33
Q ss_pred HHhcCcC----CCCCCcchhhHHHHHhhhcC--ceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcccccCc
Q 047071 528 LRQLPLY----CEDSEADSDVAEKLFHFLNG--KKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGACLEMDA 601 (902)
Q Consensus 528 l~~L~~~----~~~~~~~~~l~~~L~~~L~~--kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va~~~~~ 601 (902)
+..++.. .....+.+.....+...+.+ +++||||||+|+...+..+ ++|++||||||+..++..+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~- 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM- 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-
Confidence 4444421 12233566777778888876 7899999999988776653 56899999999998876543
Q ss_pred ceeEEe---cccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcccccccchhhhhhHhhHhhhhhcc
Q 047071 602 SKLIEV---ETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGRALTEENNVLVWEHTSKLFSKSIA 678 (902)
Q Consensus 602 ~~~~~L---~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~~ 678 (902)
...+++ ++|+.+++++||...++. ......+.+.+|+++|+|+|||+.++|+.|+.+. ..|...++.+.....
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQF 350 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCC--CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHH
Confidence 344555 589999999999999875 2233457899999999999999999999998753 468887777765432
Q ss_pred c-------cchHHHHHHhhhccccCCchhHHHHHHhhccCCCCcccchhhhhhhhcccccccccccchHHHHHHHHHHHH
Q 047071 679 N-------ATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLGDARKRGQDIIDILV 751 (902)
Q Consensus 679 ~-------~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~~~e~~~~~~L~~Lv 751 (902)
. .....+..++..||+.||+ +.|.||++||+||+++.|+.+.+...|.++ ...+..+++.|+
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------~~~~~~~l~~L~ 419 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME----------TEEVEDILQEFV 419 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------HHHHHHHHHHHH
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC----------HHHHHHHHHHHH
Confidence 1 1135899999999999999 899999999999999999999999999653 245788999999
Q ss_pred hccccccccC--CCcccchHHHHHHHHHHhc
Q 047071 752 GASLLQVTEA--GDSIKMHDLIRDLALGILS 780 (902)
Q Consensus 752 ~rSLLq~~~~--~~~y~MHdLVrdla~~i~~ 780 (902)
++|||+...+ ...|+||++++++++....
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 9999986532 3479999999999998743
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=7.5e-15 Score=161.38 Aligned_cols=290 Identities=13% Similarity=0.065 Sum_probs=173.7
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC------cHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW------SVRKIQND 526 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~------~~~~ll~~ 526 (902)
....++||+.+++.|.+.+..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...++..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHH
Confidence 3445799999999999998654 799999999999999999998765 1 6777765432 45566666
Q ss_pred HHHhcCcC--------------C-C---CCCcchhhHHHHHhhhcC-ceeEEEEccchhhhh---------hhhhcCCCC
Q 047071 527 VLRQLPLY--------------C-E---DSEADSDVAEKLFHFLNG-KKFLLLLDDVWEQIN---------LQEVGIPDP 578 (902)
Q Consensus 527 Il~~L~~~--------------~-~---~~~~~~~l~~~L~~~L~~-kr~LLVLDDV~d~~~---------~~~L~~~l~ 578 (902)
+...+... . . ...+..+....+.+.... ++++|||||++.... +..+.. +.
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-~~ 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-AY 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH-HH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH-HH
Confidence 66655320 0 0 012334444555554443 389999999987542 222211 11
Q ss_pred CCCCCcEEEEEcccCCc-c------c----ccC-cceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 579 SSENVGKIVVASRTVGA-C------L----EMD-ASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 579 ~~~~GSkIIVTTR~~~v-a------~----~~~-~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
...++.++|+|++.... . . ..+ ....+.+.+|+.+|+.+++........ .....+.+..|+..|+|+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHTTC
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCC
Confidence 11246788888875422 1 0 111 134789999999999999987543211 112245788999999999
Q ss_pred cchhhhhcccccccchhhhhhHhhHhhhhhccccchHHHHHHhhhccccC---CchhHHHHHHhhccCCCCcccchhhhh
Q 047071 647 PLLIIVTGRALTEENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQL---KDFDTKSCLLYSSLFPEDKEVNVFEFI 723 (902)
Q Consensus 647 PLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~L---p~~~lK~cfL~lAlFP~~~~I~~~~LI 723 (902)
|+++..++..+....+...+ ...+.. .+...+.-.+..+ ++ ..+..+..+|. . . ++...+.
T Consensus 239 P~~l~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g-~--~~~~~l~ 302 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRA---MKRTLE--------VAKGLIMGELEELRRRSP-RYVDILRAIAL-G-Y--NRWSLIR 302 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHH---HHHHHH--------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T-C--CSHHHHH
T ss_pred HHHHHHHHHHHhccccHhHH---HHHHHH--------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C-C--CCHHHHH
Confidence 99999987654321111111 111111 1111111111222 55 78888888887 2 1 2333332
Q ss_pred hhhcccccccccccchHHHHHHHHHHHHhccccccccCCCccc-chHHHHHHHH
Q 047071 724 ENCIHEGVIAGSLGDARKRGQDIIDILVGASLLQVTEAGDSIK-MHDLIRDLAL 776 (902)
Q Consensus 724 ~lWiAeG~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~~~~~~y~-MHdLVrdla~ 776 (902)
...-.. . ..........+++.|.+.+||... .+.|. -|++++++.+
T Consensus 303 ~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVK-G----TKIPEPRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHT-T----CCCCHHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHHHHH-h----CCCCHHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 221000 0 012345677889999999999875 34565 4788888753
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=7.6e-15 Score=165.60 Aligned_cols=306 Identities=13% Similarity=0.044 Sum_probs=180.3
Q ss_pred CCccccchHHHHHHHHHhh-c----C--CCceEEEE--ecCCCCChhhHHHHHhhcccccc---cc-cEEEEeeccccCc
Q 047071 453 GLFVSRSTERTVLKILQCI-S----G--VEAGKIGI--HGISGIGKTTVLKALISYPKTKL---IF-DVIILVTVSRYWS 519 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L-~----~--~~~~VI~I--vG~GGVGKTTLA~~vy~d~~vr~---~F-d~i~WV~vs~~~~ 519 (902)
.+..++||+.+++.|.++| . . ...+.+.| +|++|+||||||+.+++...... .| ...+|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3456799999999999988 3 2 24556667 99999999999999998763210 12 2357888777778
Q ss_pred HHHHHHHHHHhcCcCCCC-CCcchhhHHHHHhhhc--CceeEEEEccchhhh--------hhhhhcCCC---CCCC--CC
Q 047071 520 VRKIQNDVLRQLPLYCED-SEADSDVAEKLFHFLN--GKKFLLLLDDVWEQI--------NLQEVGIPD---PSSE--NV 583 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~-~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~--------~~~~L~~~l---~~~~--~G 583 (902)
...++..++.+++..... ..+.......+.+.+. +++++|||||++... .+..+...+ +..+ ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999988654321 2234555666666664 679999999998743 232222221 1112 34
Q ss_pred cEEEEEcccCCccccc---------CcceeEEecccCHHHHHHHHHHHhcC-cccCCCCcchHHHHHHHhC------CCc
Q 047071 584 GKIVVASRTVGACLEM---------DASKLIEVETVSKKEAWELFYEQVGR-VIELPHIQPFAQTIVYGCG------GLP 647 (902)
Q Consensus 584 SkIIVTTR~~~va~~~---------~~~~~~~L~~Ls~ees~~LF~~~af~-~~~~~~l~~ia~~Ia~~c~------GlP 647 (902)
..+|+||+...+...+ .....+.+.+|+.++.+++|...+.. .....-..+....|++.|+ |+|
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 4577788765422110 01223999999999999999765432 1111223467889999999 999
Q ss_pred chhhhhcccccc-----c---chhhhhhHhhHhhhhhccccchHHH-HHHhhhccccCCchhHHHHHHhhccCC--CCcc
Q 047071 648 LLIIVTGRALTE-----E---NNVLVWEHTSKLFSKSIANATIEEV-IQLLKFSFDQLKDFDTKSCLLYSSLFP--EDKE 716 (902)
Q Consensus 648 LAL~vlg~~Lr~-----~---~~~~~W~~~l~~l~~~~~~~~~~~v-~~iL~lSYd~Lp~~~lK~cfL~lAlFP--~~~~ 716 (902)
..+..+...... . -+...+..++.. .. ...+.-++..||+ ..+.++..++.+. .+..
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~-----------~~~~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE-----------NEAASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-----------C------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HhccchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 765554432110 0 011111111110 01 2345567788998 8888888888643 2223
Q ss_pred cchhhhhhhhccc--ccccccccchHHHHHHHHHHHHhcccccccc----CCCcccchHHH
Q 047071 717 VNVFEFIENCIHE--GVIAGSLGDARKRGQDIIDILVGASLLQVTE----AGDSIKMHDLI 771 (902)
Q Consensus 717 I~~~~LI~lWiAe--G~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~~----~~~~y~MHdLV 771 (902)
++...+...+... ..... ..........+++.|.+.+||.... ..+.|++|.|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 4443333222110 00000 1123456678899999999997643 23346555443
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=4.2e-14 Score=155.63 Aligned_cols=293 Identities=13% Similarity=0.095 Sum_probs=167.8
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-----CcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-----WSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-----~~~~~ll~~I 527 (902)
....++||+.+++.|.+ +.. +++.|+|++|+|||+|++++++... . ..+|+++... .+...++..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 44567999999999999 765 6999999999999999999987652 2 2478876642 2334444443
Q ss_pred HHhcCc--------------------CCC---------CCCcchhhHHHHHhhhcCceeEEEEccchhhh-----hhhhh
Q 047071 528 LRQLPL--------------------YCE---------DSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI-----NLQEV 573 (902)
Q Consensus 528 l~~L~~--------------------~~~---------~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~-----~~~~L 573 (902)
...+.. +.. .......+...+.+... ++++|||||++..+ ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 332210 000 01122333333333222 49999999997643 22222
Q ss_pred cCCCCCCCCCcEEEEEcccCCccc-----------ccCc-ceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHH
Q 047071 574 GIPDPSSENVGKIVVASRTVGACL-----------EMDA-SKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVY 641 (902)
Q Consensus 574 ~~~l~~~~~GSkIIVTTR~~~va~-----------~~~~-~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~ 641 (902)
...+.....+.++|+|++...... ..+. ...+.|.+|+.+++.+++...+......+ .+ ...|+.
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~-~~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KD-YEVVYE 237 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CC-HHHHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--Cc-HHHHHH
Confidence 211111124678999988643211 1111 36789999999999999987543211111 12 289999
Q ss_pred HhCCCcchhhhhcccccccchhhhhhHhhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCCCCcccchhh
Q 047071 642 GCGGLPLLIIVTGRALTEENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFE 721 (902)
Q Consensus 642 ~c~GlPLAL~vlg~~Lr~~~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~ 721 (902)
.|+|+|+++..++..+....+...|.. .+-......-...+...+.-. ..|++ ..+..+..+|. +. +...
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-~~l~~-~~~~~l~~la~---g~--~~~~ 307 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGR-EIARK-RYLNIMRTLSK---CG--KWSD 307 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTC-GGGHH-HHHHHHHHHTT---CB--CHHH
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhcc-ccccH-HHHHHHHHHHc---CC--CHHH
Confidence 999999999998876643222222211 110000000011111111100 15777 78999999987 21 3233
Q ss_pred hhhhhc-ccccccccccchHHHHHHHHHHHHhccccccccCCCccc-chHHHHHHH
Q 047071 722 FIENCI-HEGVIAGSLGDARKRGQDIIDILVGASLLQVTEAGDSIK-MHDLIRDLA 775 (902)
Q Consensus 722 LI~lWi-AeG~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~~~~~~y~-MHdLVrdla 775 (902)
+....- ..|. .........+++.|.+.+||... ...|+ -|++++++.
T Consensus 308 l~~~~~~~~g~-----~~~~~~~~~~L~~L~~~gli~~~--~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 308 VKRALELEEGI-----EISDSEIYNYLTQLTKHSWIIKE--GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHCS-----CCCHHHHHHHHHHHHHTTSEEES--SSCEEESSHHHHHHT
T ss_pred HHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCCEEec--CCEEEecCHHHHHhh
Confidence 221100 0010 02345677889999999999876 24566 578888764
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=1.7e-11 Score=136.40 Aligned_cols=293 Identities=11% Similarity=0.016 Sum_probs=175.2
Q ss_pred CCccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccc---c-ccEEEEeeccccCcHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKL---I-FDVIILVTVSRYWSVRKIQ 524 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~---~-Fd~i~WV~vs~~~~~~~ll 524 (902)
.+..++||+.+++++..+|.. ...+.+.|+|++|+||||||+.+++...... . --..+|+++....+...++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 346689999999999998843 4567899999999999999999987652110 0 1345778887778888999
Q ss_pred HHHHHhcCcCCCC-CCcchhhHHHHHhhh--cCceeEEEEccchhhhh-------hhhhcCCCCCC--CCCcEEEEEccc
Q 047071 525 NDVLRQLPLYCED-SEADSDVAEKLFHFL--NGKKFLLLLDDVWEQIN-------LQEVGIPDPSS--ENVGKIVVASRT 592 (902)
Q Consensus 525 ~~Il~~L~~~~~~-~~~~~~l~~~L~~~L--~~kr~LLVLDDV~d~~~-------~~~L~~~l~~~--~~GSkIIVTTR~ 592 (902)
..++.+++..... ..+..+....+.+.+ .+++.+||||+++.... +..+....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999988654322 223455566666666 35688999999976432 11221111111 345678888876
Q ss_pred CCcccccC-------cceeEEecccCHHHHHHHHHHHhcC-cccCCCCcchHHHHHHHhC---CCcch-hhhhccccc--
Q 047071 593 VGACLEMD-------ASKLIEVETVSKKEAWELFYEQVGR-VIELPHIQPFAQTIVYGCG---GLPLL-IIVTGRALT-- 658 (902)
Q Consensus 593 ~~va~~~~-------~~~~~~L~~Ls~ees~~LF~~~af~-~~~~~~l~~ia~~Ia~~c~---GlPLA-L~vlg~~Lr-- 658 (902)
......+. ....+.+++++.++...++...+.. .....-..+....|++.++ |.|.. +.++.....
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 53321111 1257899999999999999887542 1112223456788999998 99943 333322211
Q ss_pred ---c--cchhhhhhHhhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhc-cCCCCcccchhhhhhhhcc--cc
Q 047071 659 ---E--ENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSS-LFPEDKEVNVFEFIENCIH--EG 730 (902)
Q Consensus 659 ---~--~~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lA-lFP~~~~I~~~~LI~lWiA--eG 730 (902)
+ .-+.+.+..+++... ...+.-++..|++ ..+..++.++ ++.....+....+.+.... +.
T Consensus 257 ~~~~~~~i~~~~v~~a~~~~~-----------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (387)
T 2v1u_A 257 ERRREERVRREHVYSARAEIE-----------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELTST 324 (387)
T ss_dssp HHTTCSCBCHHHHHHHHHHHH-----------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHHh-----------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 0 012333333322221 1234445678888 6666666555 4432223333322222111 10
Q ss_pred cccccccchHHHHHHHHHHHHhccccccc
Q 047071 731 VIAGSLGDARKRGQDIIDILVGASLLQVT 759 (902)
Q Consensus 731 ~i~~~~~~~e~~~~~~L~~Lv~rSLLq~~ 759 (902)
. . ...........+++.|...++++..
T Consensus 325 ~-~-~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 325 L-G-LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp T-T-CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred c-C-CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 0 0 0122456778899999999999874
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=2.4e-11 Score=134.97 Aligned_cols=294 Identities=14% Similarity=0.078 Sum_probs=170.5
Q ss_pred cCCccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhccccccc-ccEEEEeeccccCcHHHHHHH
Q 047071 452 FGLFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKLI-FDVIILVTVSRYWSVRKIQND 526 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~-Fd~i~WV~vs~~~~~~~ll~~ 526 (902)
+.+..++||+.+++.|.+++.. .....+.|+|++|+||||||+.+++....... -...+|+++....+...++..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 3346679999999999999863 45678999999999999999999876521110 234678877777778888888
Q ss_pred HHHhcCcCCC-CCCcchhhHHHHHhhhc--CceeEEEEccchhhh------hhhhhcCCCCC-CCCCcEEEEEcccCCcc
Q 047071 527 VLRQLPLYCE-DSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQI------NLQEVGIPDPS-SENVGKIVVASRTVGAC 596 (902)
Q Consensus 527 Il~~L~~~~~-~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~------~~~~L~~~l~~-~~~GSkIIVTTR~~~va 596 (902)
++.+++.... ...+..+....+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 8888765432 12234455556666554 458999999997643 22222111111 22345677777765432
Q ss_pred cccC-------cceeEEecccCHHHHHHHHHHHhcC-cccCCCCcchHHHHHHHhC---CCcchhhhhcccccc------
Q 047071 597 LEMD-------ASKLIEVETVSKKEAWELFYEQVGR-VIELPHIQPFAQTIVYGCG---GLPLLIIVTGRALTE------ 659 (902)
Q Consensus 597 ~~~~-------~~~~~~L~~Ls~ees~~LF~~~af~-~~~~~~l~~ia~~Ia~~c~---GlPLAL~vlg~~Lr~------ 659 (902)
..+. ....+.+++++.++..+++...+.. .....-..+....|++.++ |.|..+..+......
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 2111 1257999999999999999886542 1122333556778888888 999844333221110
Q ss_pred --cchhhhhhHhhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCCC-C-cccchhhhhhhh--ccccccc
Q 047071 660 --ENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPE-D-KEVNVFEFIENC--IHEGVIA 733 (902)
Q Consensus 660 --~~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~-~-~~I~~~~LI~lW--iAeG~i~ 733 (902)
.-+.+.+..+++.. ....+.-.+..|++ ..+..+..++.+.+ + ..+....+.... +++.+ .
T Consensus 257 ~~~i~~~~v~~a~~~~-----------~~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~-g 323 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEI-----------ERDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL-G 323 (386)
T ss_dssp CSSCCHHHHHHHHHHH-----------HHHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH-T
T ss_pred CCccCHHHHHHHHHHH-----------hhchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc-C
Confidence 01222222222211 12234555677887 66666666653211 1 112222221111 11100 0
Q ss_pred ccccchHHHHHHHHHHHHhccccccc
Q 047071 734 GSLGDARKRGQDIIDILVGASLLQVT 759 (902)
Q Consensus 734 ~~~~~~e~~~~~~L~~Lv~rSLLq~~ 759 (902)
...........+++.|.+.++|+..
T Consensus 324 -~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 -VEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred -CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 0111235677889999999999763
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=5.1e-11 Score=133.04 Aligned_cols=285 Identities=12% Similarity=-0.017 Sum_probs=174.8
Q ss_pred CccccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccc-----c-ccEEEEeeccccC-cHHH
Q 047071 454 LFVSRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKL-----I-FDVIILVTVSRYW-SVRK 522 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~-----~-Fd~i~WV~vs~~~-~~~~ 522 (902)
+..++||+.+++++.++|.. ...+.+.|+|++|+|||+||+.+++...... . ....+|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 36689999999999987743 4467899999999999999999987652110 0 3356788877766 7888
Q ss_pred HHHHHHHhcCcCC--CCCCcchhhHHHHHhhhcCceeEEEEccchhhhh-------hhhhcCCCCCCCCCcEEEEEcccC
Q 047071 523 IQNDVLRQLPLYC--EDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN-------LQEVGIPDPSSENVGKIVVASRTV 593 (902)
Q Consensus 523 ll~~Il~~L~~~~--~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~-------~~~L~~~l~~~~~GSkIIVTTR~~ 593 (902)
++..++.++.... ....+.......+.+.+..++.+||||+++.... +..+.... .+..+|+||+..
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence 8888888773222 1222345667777777877666999999986532 22232221 677889998875
Q ss_pred Cccccc------CcceeEEecccCHHHHHHHHHHHhcC-cccCCCCcchHHHHHHHhC---CCcc-hhhhhcccc--c--
Q 047071 594 GACLEM------DASKLIEVETVSKKEAWELFYEQVGR-VIELPHIQPFAQTIVYGCG---GLPL-LIIVTGRAL--T-- 658 (902)
Q Consensus 594 ~va~~~------~~~~~~~L~~Ls~ees~~LF~~~af~-~~~~~~l~~ia~~Ia~~c~---GlPL-AL~vlg~~L--r-- 658 (902)
.....+ .....+.+++++.++...+|...+.. .....-..+....|++.|+ |.|. ++.++-... .
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 321111 11238999999999999999987541 1112233456788999998 8886 333332221 1
Q ss_pred -ccchhhhhhHhhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCCCCcccchhhhhhhhccccccccccc
Q 047071 659 -EENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFPEDKEVNVFEFIENCIHEGVIAGSLG 737 (902)
Q Consensus 659 -~~~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP~~~~I~~~~LI~lWiAeG~i~~~~~ 737 (902)
..-+.+.+..+++... ...+.-+++.|++ ..+..+..++....+-.+. ..... +++.+- ...
T Consensus 255 ~~~i~~~~v~~~~~~~~-----------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~--~~~~~g--~~~ 317 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE-----------QERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTD--LCNKFK--QKP 317 (384)
T ss_dssp SSCCCHHHHHHHHHHHH-----------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHH--HHHHTT--CCC
T ss_pred CCccCHHHHHHHHHHHh-----------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHH--HHHHcC--CCC
Confidence 1123334444333221 1234456678887 6676666666511100111 00001 111110 011
Q ss_pred chHHHHHHHHHHHHhccccccc
Q 047071 738 DARKRGQDIIDILVGASLLQVT 759 (902)
Q Consensus 738 ~~e~~~~~~L~~Lv~rSLLq~~ 759 (902)
.......++++.|...+||+..
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 2446778899999999999874
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=9.2e-11 Score=130.89 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=174.0
Q ss_pred cCCccccchHHHHHHHHHhhcC----CCce--EEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHH
Q 047071 452 FGLFVSRSTERTVLKILQCISG----VEAG--KIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQN 525 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~----~~~~--VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~ 525 (902)
+.+..++||+.+++.|..++.. .... .+.|+|++|+||||||+.+++....... ...+|+++....+...++.
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHH
Confidence 3446689999999999998864 2334 8999999999999999999877632111 3467788777778889999
Q ss_pred HHHHhcCcCCCC-CCcchhhHHHHHhhhc--CceeEEEEccchhh--hhhhhhcCCCCCCC----CCcEEEEEcccCCcc
Q 047071 526 DVLRQLPLYCED-SEADSDVAEKLFHFLN--GKKFLLLLDDVWEQ--INLQEVGIPDPSSE----NVGKIVVASRTVGAC 596 (902)
Q Consensus 526 ~Il~~L~~~~~~-~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~--~~~~~L~~~l~~~~----~GSkIIVTTR~~~va 596 (902)
.++..++..... ..+.......+...+. +++.+||||+++.. ..+..+...+.... .+..||++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 999888654321 2234555555655553 56889999999764 22333322222111 356788887765322
Q ss_pred cccC-------cceeEEecccCHHHHHHHHHHHhcC-cccCCCCcchHHHHHHHh---------CCCcchhhhhcccccc
Q 047071 597 LEMD-------ASKLIEVETVSKKEAWELFYEQVGR-VIELPHIQPFAQTIVYGC---------GGLPLLIIVTGRALTE 659 (902)
Q Consensus 597 ~~~~-------~~~~~~L~~Ls~ees~~LF~~~af~-~~~~~~l~~ia~~Ia~~c---------~GlPLAL~vlg~~Lr~ 659 (902)
..+. ....+.+.+++.++...++...+.. .....-..+....|++.+ +|.|..+..+......
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 2111 1236999999999999999887643 111223346778899999 7887544433322111
Q ss_pred -----cchhhhhhHhhHhhhhhccccchHHHHHHhhhccccCCchhHHHHHHhhccCC---CCcccchhhhhhhhccccc
Q 047071 660 -----ENNVLVWEHTSKLFSKSIANATIEEVIQLLKFSFDQLKDFDTKSCLLYSSLFP---EDKEVNVFEFIENCIHEGV 731 (902)
Q Consensus 660 -----~~~~~~W~~~l~~l~~~~~~~~~~~v~~iL~lSYd~Lp~~~lK~cfL~lAlFP---~~~~I~~~~LI~lWiAeG~ 731 (902)
+...-.+..+.+.+.... ...+.-.+..|+. +.+.++..++.+. .+..++...+...+-. +
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~--------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~--~ 321 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL--------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKI--V 321 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS--------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH--H
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh--------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHH--H
Confidence 000001111111111100 0111223456777 6777776666543 2213444444333211 0
Q ss_pred cccc--ccchHHHHHHHHHHHHhccccccc
Q 047071 732 IAGS--LGDARKRGQDIIDILVGASLLQVT 759 (902)
Q Consensus 732 i~~~--~~~~e~~~~~~L~~Lv~rSLLq~~ 759 (902)
.... ..........+++.|...++|...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 0000 112346677899999999999874
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.10 E-value=1.1e-10 Score=120.07 Aligned_cols=194 Identities=10% Similarity=0.049 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++||+..++.|...+.... .+.+.|+|++|+||||||+.+++.......+.. ..... ... ...+.....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHHhccCC
Confidence 3457999999999999987643 458899999999999999999876532111100 00000 000 011111000
Q ss_pred cCC----CCCCcchhhHHHHHhh-----hcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCCcc-c-cc
Q 047071 533 LYC----EDSEADSDVAEKLFHF-----LNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVGAC-L-EM 599 (902)
Q Consensus 533 ~~~----~~~~~~~~l~~~L~~~-----L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~va-~-~~ 599 (902)
... ............+.+. ..+++.+|||||++.. ..+..+...+.....+..+|+||+..... . ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000 0000111111122222 2356799999999763 34555543333334567888888664321 1 11
Q ss_pred CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhcc
Q 047071 600 DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTGR 655 (902)
Q Consensus 600 ~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg~ 655 (902)
.....+.+++++.++..+++...+... ...-..+....|++.|+|+|..+..+..
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEE-HIAHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHT-TCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 224688999999999999998877531 1122345678999999999998876653
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.05 E-value=8.2e-10 Score=112.22 Aligned_cols=184 Identities=11% Similarity=0.041 Sum_probs=113.1
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCc
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
...++||+..++.+.+++.....+.+.|+|++|+|||+||+.+++.......-...+.++.+.......+...+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 34579999999999999987665569999999999999999998764211111122333333333322222111111000
Q ss_pred CCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCCcc-c-ccCcceeEEecc
Q 047071 534 YCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVGAC-L-EMDASKLIEVET 609 (902)
Q Consensus 534 ~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~va-~-~~~~~~~~~L~~ 609 (902)
. ....+++.+|||||++.. ..+..+...+.....+.++|+||+..... . .......+.+.+
T Consensus 96 ~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 96 A---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp C---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred c---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 0 011357889999999764 22333333232334567888888764321 1 112234789999
Q ss_pred cCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhh
Q 047071 610 VSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 610 Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
++.++...++...+... ...-..+....|++.++|.|..+..+
T Consensus 161 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKE-GVKITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CCHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999998877431 11122456788999999999865443
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=1.1e-08 Score=110.98 Aligned_cols=184 Identities=14% Similarity=0.110 Sum_probs=113.2
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCc
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
...++|++..++.|.+++..+..+.+.|+|++|+|||++|+.+++...........++++.+....... .++++..+..
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~ 98 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKHFAQ 98 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHHHHh
Confidence 345799999999999999876655599999999999999999987642111112234444443322221 1222221110
Q ss_pred CCCCCCcchhhHHHHHhhh-cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCC-ccc-ccCcceeEEec
Q 047071 534 YCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVG-ACL-EMDASKLIEVE 608 (902)
Q Consensus 534 ~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~-va~-~~~~~~~~~L~ 608 (902)
. ...+ .+++.+|||||++.. ..+..+...+.....++.+|+||+... +.. .......+.+.
T Consensus 99 ~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 99 K--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp B--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred c--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 0 0012 346889999999864 233444333322345677888776532 211 11234589999
Q ss_pred ccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch-hhhh
Q 047071 609 TVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL-IIVT 653 (902)
Q Consensus 609 ~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA-L~vl 653 (902)
+++.++...++...+... ...-..+....|++.|+|.|.. +..+
T Consensus 165 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLE-DVKYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp CCCHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999998876431 1112245678899999999954 4444
No 15
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.69 E-value=1.7e-09 Score=101.63 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=56.7
Q ss_pred HHHHHHhhhHHHHHHhhcCccccch--------------hHHhhhhh--ccCChHHHHHHHHHHHHhccccccccchhhh
Q 047071 322 VDQVSASNVEPVTEDEVICPTQIDT--------------RTMDQSEI--QLSSSEVESWSSGTVETLSDGNERMLPVHRE 385 (902)
Q Consensus 322 vl~~ll~rl~s~l~dE~~L~~~V~~--------------~ledAE~r--~itn~~vk~WL~qLRd~aYD~ED~Ld~~~~d 385 (902)
+++.+++|+.+++.+|+.++.||+. +|.+|+.+ +.+|++++.|+++|||++||+||++ |
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i-----D 76 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVV-----D 76 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH-----H
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 5667889999999999999999876 56899998 6799999999999999999999999 6
Q ss_pred hhccc
Q 047071 386 EFKTA 390 (902)
Q Consensus 386 ~f~~~ 390 (902)
+|.++
T Consensus 77 ~f~~~ 81 (115)
T 3qfl_A 77 KFLVQ 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.65 E-value=3.8e-07 Score=99.34 Aligned_cols=174 Identities=12% Similarity=0.017 Sum_probs=104.1
Q ss_pred CCccccchHHHHHHHHHhhcC-----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISG-----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~-----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
....++|++..++.+...+.. .....+.|+|++|+|||+||+.+++.. ...| .+++.+......++..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~~~---~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GVNL---RVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH--TCCE---EEECTTTCCSHHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEeccccCChHHHHH--
Confidence 445679999999998888752 344678899999999999999998755 2222 3444332222222111
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCCC--------C----------CCCCcEEE
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPDP--------S----------SENVGKIV 587 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~--------~----------~~~GSkII 587 (902)
.+...+ .++.+|+||+++... ....+...+. . ..++..+|
T Consensus 83 -------------------~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 83 -------------------ILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -------------------HHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -------------------HHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111111 245688899987542 1111110000 0 01234566
Q ss_pred EEcccCC-ccccc-Cc-ceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhc
Q 047071 588 VASRTVG-ACLEM-DA-SKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTG 654 (902)
Q Consensus 588 VTTR~~~-va~~~-~~-~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg 654 (902)
.||.... +...+ .. ...+.+.+++.++...++...+... ...-..+....|++.++|.|-.+..+.
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL-GVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTT-TCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 6665432 21111 11 3578999999999999998877541 122234678899999999998766554
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=5.1e-08 Score=105.94 Aligned_cols=184 Identities=11% Similarity=0.009 Sum_probs=110.6
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCc
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPL 533 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~ 533 (902)
...++|++..++.|.+++..+..+.+.|+|++|+||||+|+.+++.......-...+.++.+....... +...+..+..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 102 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKEFAR 102 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHHHHHHh
Confidence 455799999999999999876666699999999999999999987642111001123333222111111 1111110000
Q ss_pred CCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCCc-ccc-cCcceeEEecc
Q 047071 534 YCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVGA-CLE-MDASKLIEVET 609 (902)
Q Consensus 534 ~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~v-a~~-~~~~~~~~L~~ 609 (902)
. .....+++.++|+|+++.. ..+..+...+.....++++|+||....- ... ......+.+.+
T Consensus 103 ~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 103 T--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp S--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCC
T ss_pred h--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecC
Confidence 0 0011256889999999864 3344443333233456788888765432 111 11234789999
Q ss_pred cCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhh
Q 047071 610 VSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 610 Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vl 653 (902)
++.++...++...+... ...-..+....|++.++|.|..+..+
T Consensus 169 l~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAENE-GLELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp CCHHHHHHHHHHHHHTT-TCEECHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999998876541 11122456788999999999865443
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.49 E-value=6e-07 Score=97.06 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccc-cEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIF-DVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F-d~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|++..++.|.+++..+..+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------------- 81 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG------------- 81 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC-------------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC-------------
Confidence 355799999999999999876665699999999999999999987642 1111 1122233322111
Q ss_pred cCCCCCCcchhhHHHHHhh--h-cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCC-ccc-ccCcceeE
Q 047071 533 LYCEDSEADSDVAEKLFHF--L-NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVG-ACL-EMDASKLI 605 (902)
Q Consensus 533 ~~~~~~~~~~~l~~~L~~~--L-~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~-va~-~~~~~~~~ 605 (902)
..........+... + .+++.++|+|+++.. .....+...+.....+.++|+||.... +.. .......+
T Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 82 -----IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp -----TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred -----hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 00111111111111 1 256889999999764 234445444444445677887776543 211 11234589
Q ss_pred EecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 606 EVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 606 ~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
.+.+++.++...++...+... ...-..+....|+..++|.+..+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~-~~~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKE-GVKITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTT-CCCBCHHHHHHHHHTTTTCHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999998776541 1122345677888889998875443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.39 E-value=1e-06 Score=97.73 Aligned_cols=192 Identities=10% Similarity=0.045 Sum_probs=109.5
Q ss_pred CccccchHHHHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|++..++.|...+..+. ...+.|+|++|+||||+|+.+++.......+. .. ++........+.....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~----~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---AT----PCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SS----CCSSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CC----CCcccHHHHHHhccCC
Confidence 3457999999999999987644 45788999999999999999987653211110 00 0000011111111100
Q ss_pred cC-----CCCCCcchhhHHHHHhhh-----cCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCC-ccc-c
Q 047071 533 LY-----CEDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVG-ACL-E 598 (902)
Q Consensus 533 ~~-----~~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~-va~-~ 598 (902)
.. .......+. ...+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|++|.... +.. .
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 00 000001111 12222222 356789999999754 234444333322334566776665432 211 1
Q ss_pred cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhc
Q 047071 599 MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTG 654 (902)
Q Consensus 599 ~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg 654 (902)
......+++.+++.++...++...+... ...-..+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~-~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEE-HIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1234688999999999999998766431 111223567889999999998776543
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.30 E-value=7.3e-07 Score=88.01 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=41.3
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++||+.+++++.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999987666778999999999999999998764
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.29 E-value=3.8e-07 Score=94.15 Aligned_cols=170 Identities=12% Similarity=0.042 Sum_probs=98.9
Q ss_pred ccccch---HHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc
Q 047071 455 FVSRST---ERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL 531 (902)
Q Consensus 455 ~~~VGR---e~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L 531 (902)
...+|. +..++.+..++.....+.+.|+|++|+||||||+.+++.... ....+.|++.....+. +
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~~~~~----------~ 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGIHASI----------S 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGGGS----------C
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHH----------H
Confidence 445653 356667777766556678999999999999999999876532 2233456654432110 0
Q ss_pred CcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh----hhhhcCCCCC-CCCC-cEEEEEcccCCc-ccc------
Q 047071 532 PLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN----LQEVGIPDPS-SENV-GKIVVASRTVGA-CLE------ 598 (902)
Q Consensus 532 ~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~----~~~L~~~l~~-~~~G-SkIIVTTR~~~v-a~~------ 598 (902)
.. ..+.+ .++.+|||||++.... ...+...+.. ...+ .++|+||+...- ...
T Consensus 96 ----------~~----~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~ 160 (242)
T 3bos_A 96 ----------TA----LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLV 160 (242)
T ss_dssp ----------GG----GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHH
T ss_pred ----------HH----HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhh
Confidence 00 00111 4567999999975421 2222211110 0112 247777764321 110
Q ss_pred --cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 599 --MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 599 --~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
+.....+.+.+++.++..+++...+.. ....-..+....|++.++|.+-.+..
T Consensus 161 ~r~~~~~~i~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 161 SRMHWGLTYQLQPMMDDEKLAALQRRAAM-RGLQLPEDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp HHHHHSEEEECCCCCGGGHHHHHHHHHHH-TTCCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred hHhhcCceEEeCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHccCCHHHHHH
Confidence 111268899999999999999887643 11122345678888889888765543
No 22
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.7e-06 Score=95.08 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=104.3
Q ss_pred ccchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcccccc------cccEEEEeeccccCcHHHHHHH
Q 047071 457 SRSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYPKTKL------IFDVIILVTVSRYWSVRKIQND 526 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~------~Fd~i~WV~vs~~~~~~~ll~~ 526 (902)
+.||++++++|...|.. +..+.+.|+|++|+|||++++.+++...... .| ..+++++....+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 58999999999988753 5678899999999999999999998763211 22 3567777777888899999
Q ss_pred HHHhcCcCCCCCCcchhhHHHHHhhh---cCceeEEEEccchhhhhhhhhcCCC--CCCCCCc--EEEEEcccCCcc---
Q 047071 527 VLRQLPLYCEDSEADSDVAEKLFHFL---NGKKFLLLLDDVWEQINLQEVGIPD--PSSENVG--KIVVASRTVGAC--- 596 (902)
Q Consensus 527 Il~~L~~~~~~~~~~~~l~~~L~~~L---~~kr~LLVLDDV~d~~~~~~L~~~l--~~~~~GS--kIIVTTR~~~va--- 596 (902)
|++++................+...+ .+++++++||.++...+-+.+...+ +.. .++ .||.++......
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~-~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISS-KNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHC-SSCCEEEEEECCSSCCCHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccc-cCCcEEEEEEecCcccchhh
Confidence 99998654321112222333333333 4678999999997643211111111 111 122 233344333221
Q ss_pred ------cccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 597 ------LEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 597 ------~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
..++ ...+.+.+++.++-.+++..++..
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1111 256899999999999999887643
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.26 E-value=5.9e-06 Score=88.31 Aligned_cols=173 Identities=15% Similarity=0.075 Sum_probs=100.3
Q ss_pred ccCCccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 451 EFGLFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
......++|.+..+++|.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...| +.+..+.-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~~---~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NATF---IRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCEE---EEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehHHH
Confidence 44556789999999999887732 345678999999999999999998876 2222 22222111
Q ss_pred CcHHHHHHHHHHhcCcCCCCCCcchhhHHH-HHhhhcCceeEEEEccchhhh----------------hhhhhcCCCC--
Q 047071 518 WSVRKIQNDVLRQLPLYCEDSEADSDVAEK-LFHFLNGKKFLLLLDDVWEQI----------------NLQEVGIPDP-- 578 (902)
Q Consensus 518 ~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~-L~~~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~-- 578 (902)
.. .. .......... +.......+.+|+||+++... .+..+...+.
T Consensus 88 ~~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VK--------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CC--------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HH--------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 00 00 0011111222 222234566899999997531 1222211111
Q ss_pred CCCCCcEEEEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 579 SSENVGKIVVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 579 ~~~~GSkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
....+..||.||....... .......+.++.++.++..++|...+...... .......|+..+.|.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA--EDVNLEEIAKMTEGC 222 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC--TTCCHHHHHHHCTTC
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC--CcCCHHHHHHHcCCC
Confidence 1223566777776543321 11123478999999999999998887652111 122357788877774
No 24
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.24 E-value=3e-06 Score=85.89 Aligned_cols=86 Identities=27% Similarity=0.415 Sum_probs=70.5
Q ss_pred CCceeeccCCCCCCCC-CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 815 GHRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
..+.+...+..+..+| .+..+.+|++|+|++|.+..++.. ..+.+|++|+|+ ...+..+|+..+++|++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCccCEeCHHHhCCCCCCCEEECC
Confidence 4455566666677776 678888999999999999888864 889999999999 566888887668999999999999
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|+|..+|.+
T Consensus 111 ~N~l~~~~~~ 120 (193)
T 2wfh_A 111 GNDISVVPEG 120 (193)
T ss_dssp SSCCCBCCTT
T ss_pred CCCCCeeChh
Confidence 9999988874
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=1.1e-05 Score=94.36 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=107.5
Q ss_pred CccccchHHHHHHHHHhhcC-----------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc
Q 047071 454 LFVSRSTERTVLKILQCISG-----------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR 516 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~-----------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~ 516 (902)
...++|++..+++|.++|.. +..+.+.|+|++|+||||||+.+++.. .+ .++.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 45679999999999999864 134789999999999999999998876 12 233445444
Q ss_pred cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh--hhcCceeEEEEccchhhhh-----hhhhcCCCCCCCCCcEEEEE
Q 047071 517 YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH--FLNGKKFLLLLDDVWEQIN-----LQEVGIPDPSSENVGKIVVA 589 (902)
Q Consensus 517 ~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~--~L~~kr~LLVLDDV~d~~~-----~~~L~~~l~~~~~GSkIIVT 589 (902)
.... .+....+....... +.......... ...+++.+|+||+++.... +..+...+.. .+..||++
T Consensus 113 ~~~~-~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 113 VRSK-TLLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp CCCH-HHHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred cchH-HHHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 3332 23333222221110 01110000000 1235788999999976421 1222211111 12335555
Q ss_pred cccCC---cccccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc-hhhhh
Q 047071 590 SRTVG---ACLEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL-LIIVT 653 (902)
Q Consensus 590 TR~~~---va~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL-AL~vl 653 (902)
+.+.. +.........+.+++++.++..+.+...+.... ..-..+....|++.++|.+- ++..+
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~-~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK-FKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 44322 222223346789999999999999887765411 11224567889999999554 45544
No 26
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.20 E-value=3.6e-06 Score=87.45 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=60.3
Q ss_pred CceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+|. +..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ++.+..+|.. +++|.+|++|+|+
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRG-IERLTHLTHLALD 143 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCSCCTT-GGGCTTCSEEECC
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc-CCcccccCcc-cccCCCCCEEECC
Confidence 3444555555666652 56777788888888877777764 677888888887 5567788877 7888888888888
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|+|..+|..
T Consensus 144 ~N~l~~~~~~ 153 (229)
T 3e6j_A 144 QNQLKSIPHG 153 (229)
T ss_dssp SSCCCCCCTT
T ss_pred CCcCCccCHH
Confidence 8888777753
No 27
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.19 E-value=4.7e-06 Score=82.61 Aligned_cols=85 Identities=24% Similarity=0.417 Sum_probs=56.5
Q ss_pred CceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+|. +..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...++.+|...+++|.+|++|+|+
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-ENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CCCccccCHHHhhCCcccCEEECc
Confidence 3444444445555552 56677777777777777777654 677777777777 445777776656777777777777
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|+|..+|..
T Consensus 109 ~N~l~~~~~~ 118 (177)
T 2o6r_A 109 TNQLKSVPDG 118 (177)
T ss_dssp SSCCSCCCTT
T ss_pred CCcceEeCHH
Confidence 7777777754
No 28
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.19 E-value=2.2e-06 Score=85.10 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=54.3
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeCh--hhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPM--SFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~--sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++.+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ++.+..+|. . ++++++|++|+|+
T Consensus 44 L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~-l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 44 FDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT-NNSLVELGDLDP-LASLKSLTYLCIL 121 (176)
T ss_dssp CSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC-SCCCCCGGGGGG-GGGCTTCCEEECC
T ss_pred CCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC-CCcCCcchhhHh-hhcCCCCCEEEec
Confidence 344444555555555666667777777777777776653 567777777777 445666776 5 6677777777777
Q ss_pred CCCCccCCC
Q 047071 892 KTRINCLPN 900 (902)
Q Consensus 892 ~c~I~~LP~ 900 (902)
+|.|..+|.
T Consensus 122 ~N~i~~~~~ 130 (176)
T 1a9n_A 122 RNPVTNKKH 130 (176)
T ss_dssp SSGGGGSTT
T ss_pred CCCCCCcHh
Confidence 776666664
No 29
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.18 E-value=3.7e-06 Score=83.90 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=69.8
Q ss_pred CCCceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEE
Q 047071 814 EGHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLN 889 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~Ld 889 (902)
...+.+...+..+..++ .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...|..+|+..+++|.+|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CCccceeCHHHhccccCCCEEE
Confidence 34455666666777774 478889999999999999998875 789999999999 5678899887788999999999
Q ss_pred eeCCCCccCCC
Q 047071 890 LSKTRINCLPN 900 (902)
Q Consensus 890 Ls~c~I~~LP~ 900 (902)
|+++.+...|.
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99998877665
No 30
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.15 E-value=3.2e-06 Score=92.91 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=65.7
Q ss_pred CCCCCCCcccccccEEEeccC-CCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 825 GLTEPPSLKEWEQAKFIFLMD-NELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 825 ~l~~lp~l~~l~~Lr~L~L~~-~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
.+..+|.+..+.+|+.|+|++ |.+..+|.. ..|.+|++|+|+ .+.|..+|+..|++|.+|++|||++++|..+|++
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 577788888888999999996 889998863 889999999999 5579999887689999999999999999999975
No 31
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.13 E-value=6.2e-06 Score=85.70 Aligned_cols=85 Identities=27% Similarity=0.354 Sum_probs=51.4
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++ .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.++.+|...++.|.+|++|+|+
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCcCCccChhHhCcchhhCeEecc
Confidence 344444444455442 355666666666666666666653 566666666666 345666666545666666777776
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|+|..+|..
T Consensus 121 ~N~l~~lp~~ 130 (229)
T 3e6j_A 121 CNKLTELPRG 130 (229)
T ss_dssp SSCCCSCCTT
T ss_pred CCcccccCcc
Confidence 6666666654
No 32
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.12 E-value=6.2e-06 Score=82.21 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=68.4
Q ss_pred eeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 818 FLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 818 ~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
.+...+..+..+|.-. ..+|++|+|++|.+..+|.. ..+++|++|+|+ .+.|..+|...+++|.+|++|||++|+|
T Consensus 16 ~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEEECCCCcc
Confidence 3445556677777421 37899999999999998653 899999999999 5689999998679999999999999999
Q ss_pred ccCCCC
Q 047071 896 NCLPNT 901 (902)
Q Consensus 896 ~~LP~s 901 (902)
+.+|+.
T Consensus 94 ~~l~~~ 99 (174)
T 2r9u_A 94 KSIPRG 99 (174)
T ss_dssp CCCCTT
T ss_pred ceeCHH
Confidence 999975
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.10 E-value=4e-06 Score=98.65 Aligned_cols=87 Identities=22% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCCceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEE
Q 047071 814 EGHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLN 889 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~Ld 889 (902)
...+.+...+..++.+| .+.++++|++|+|++|.+..+|+. .+|++|++|+|++ ..|+.+|...|++|.+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCCCEEE
Confidence 34455555666666665 477888888888888888888764 7788888888884 458888876578888888888
Q ss_pred eeCCCCccCCCC
Q 047071 890 LSKTRINCLPNT 901 (902)
Q Consensus 890 Ls~c~I~~LP~s 901 (902)
|++|+|+.+|+.
T Consensus 131 Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 131 AVETNLASLENF 142 (635)
T ss_dssp CTTSCCCCSTTC
T ss_pred CCCCcCCCCChh
Confidence 888888887753
No 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=4.3e-06 Score=91.90 Aligned_cols=193 Identities=10% Similarity=0.052 Sum_probs=108.4
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccccccc-EEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFD-VIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd-~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|++..++.|...+..+..+.+.|+|++|+||||+|+.+++.......+. ....++.+.......+ .+.+..+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHh
Confidence 456799999999999999876555589999999999999999987642111111 1233333332222221 22121111
Q ss_pred cCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccCC-cccc-cCcceeEEec
Q 047071 533 LYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTVG-ACLE-MDASKLIEVE 608 (902)
Q Consensus 533 ~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~~-va~~-~~~~~~~~L~ 608 (902)
...... .... .....-.+++-+|++|+++... ....+...+.......++|++|.... +... ......+.+.
T Consensus 115 ~~~~~~-~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 115 RLTVSK-PSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HSCCCC-CCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred hhcccc-cchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 100000 0000 0001112355799999987542 22333222222233556777664332 2111 1123478999
Q ss_pred ccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 609 TVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 609 ~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
+++.++....+...+.. ....-..+....|++.++|.|-.+..
T Consensus 191 ~~~~~~~~~~l~~~~~~-~~~~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQ-ENVKCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp CCCHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHTSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999887643 11122346788999999999876443
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.09 E-value=9.3e-06 Score=82.49 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=60.4
Q ss_pred ceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 817 RFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
+.+...+..+..+|. +..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|...++++.+|++|+|++
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC-CCcCcccCHhHhccCCcCCEEECCC
Confidence 344444555555553 56777888888888888777764 678888888887 4567777776567888888888888
Q ss_pred CCCccCCCC
Q 047071 893 TRINCLPNT 901 (902)
Q Consensus 893 c~I~~LP~s 901 (902)
|+|..+|..
T Consensus 134 N~l~~~~~~ 142 (208)
T 2o6s_A 134 NQLKSVPDG 142 (208)
T ss_dssp SCCSCCCTT
T ss_pred CccceeCHH
Confidence 888777764
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.07 E-value=3.6e-06 Score=92.45 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=41.4
Q ss_pred eeccCCCCCCCC-CcccccccEEEeccCCC-cccCCCC-C---------CCCCccEEEeecCCCCceeChhhhcCCCCcc
Q 047071 819 LLRAGAGLTEPP-SLKEWEQAKFIFLMDNE-LCTLPEK-P---------SCSELSVLFLQRNYQLKVIPMSFFQFMTSLK 886 (902)
Q Consensus 819 l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~-i~~LP~~-~---------~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr 886 (902)
+...+..+..+| .+..+.+|++|+|++|+ +..+|.. . .+++|++|+|++ +.+..+|.. +++|++|+
T Consensus 132 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~-l~~l~~L~ 209 (328)
T 4fcg_A 132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPAS-IANLQNLK 209 (328)
T ss_dssp EEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGG-GGGCTTCC
T ss_pred EECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHh-hcCCCCCC
Confidence 333333444444 34455555555555532 3334443 2 155555555553 245566665 66666666
Q ss_pred EEEeeCCCCccCCC
Q 047071 887 VLNLSKTRINCLPN 900 (902)
Q Consensus 887 ~LdLs~c~I~~LP~ 900 (902)
+|+|++|+|..+|+
T Consensus 210 ~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 210 SLKIRNSPLSALGP 223 (328)
T ss_dssp EEEEESSCCCCCCG
T ss_pred EEEccCCCCCcCch
Confidence 66666666666654
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.07 E-value=4.6e-06 Score=91.54 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=71.5
Q ss_pred CCceeeccCCCCCCCC-CcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcC---------CC
Q 047071 815 GHRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQF---------MT 883 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~---------L~ 883 (902)
..+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..|++|++|+|++|..+..+|.. ++. |.
T Consensus 105 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLV 183 (328)
T ss_dssp TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC-SEEEC-CCCEEEST
T ss_pred CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChh-HhhccchhhhccCC
Confidence 4455666666677777 478899999999999988888876 88999999999988888899988 654 99
Q ss_pred CccEEEeeCCCCccCCCC
Q 047071 884 SLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 884 ~Lr~LdLs~c~I~~LP~s 901 (902)
+|++|+|++|+|..+|.+
T Consensus 184 ~L~~L~L~~n~l~~lp~~ 201 (328)
T 4fcg_A 184 NLQSLRLEWTGIRSLPAS 201 (328)
T ss_dssp TCCEEEEEEECCCCCCGG
T ss_pred CCCEEECcCCCcCcchHh
Confidence 999999999999888875
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.07 E-value=1.2e-05 Score=84.51 Aligned_cols=175 Identities=11% Similarity=0.112 Sum_probs=91.2
Q ss_pred CCccccchHHHHHHHHHhhc---C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 453 GLFVSRSTERTVLKILQCIS---G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~---~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
....++|.+..++.|.+++. . ...+-+.|+|++|+|||+||+.+++.. ...| +.++.+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVPF---LAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCCE---EEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE---EEechHHHHhh
Confidence 34567888888777766542 1 234568899999999999999998865 2222 23333221100
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh-----------------hhhhhcCCCCC--CC
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI-----------------NLQEVGIPDPS--SE 581 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~-----------------~~~~L~~~l~~--~~ 581 (902)
............+.......+.+|+||+++... .+..+...+.. ..
T Consensus 79 ---------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 ---------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ---------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 000011111222222233457899999997541 11122111111 12
Q ss_pred CCcEEEEEcccCCcc-cc-c---CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 582 NVGKIVVASRTVGAC-LE-M---DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 582 ~GSkIIVTTR~~~va-~~-~---~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
.+..||.||...... .. . .....+.++.++.++-.+++...+...............+++.+.|.+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCC
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCC
Confidence 344556666443211 11 1 123577899999999999998776441111111112356777766654
No 39
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.06 E-value=2.2e-05 Score=86.15 Aligned_cols=171 Identities=12% Similarity=0.007 Sum_probs=99.5
Q ss_pred CCccccchHHHHHHHHHhhcC-----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISG-----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~-----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
....++|++..++.+..++.. .....+.|+|++|+|||+||+.+++.. ...| +.++........
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~--~~~~---~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM--SANI---KTTAAPMIEKSG------ 95 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT--TCCE---EEEEGGGCCSHH------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe---EEecchhccchh------
Confidence 345679999999999988853 345678999999999999999998765 2333 222222111111
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCC------------------CCCCCCcEEE
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPD------------------PSSENVGKIV 587 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l------------------~~~~~GSkII 587 (902)
.....+.. ..+..+|+||+++... ....+...+ ....++..+|
T Consensus 96 ---------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 96 ---------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ---------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ---------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11111111 2356788999987541 111111000 0011134555
Q ss_pred EEcccCCc-ccc-c-CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 588 VASRTVGA-CLE-M-DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 588 VTTR~~~v-a~~-~-~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
.+|..... ... . .....+.+.+++.++...++...+... ...-..+....|++.+.|.|-.+..
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKL-NKTCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-TCEECHHHHHHHHHTTTTCHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 55544222 110 1 123679999999999999998776531 1112245677888889998854443
No 40
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.04 E-value=1.1e-05 Score=79.94 Aligned_cols=85 Identities=25% Similarity=0.286 Sum_probs=66.9
Q ss_pred CCCceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEE
Q 047071 814 EGHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLN 889 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~Ld 889 (902)
.....+...+..+..++ .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.++.+|+..+++|.+|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-DNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-CCccCEeCHHHhcCCCCCCEEE
Confidence 34455666666777774 477888999999999988888875 688999999998 5578888886688899999999
Q ss_pred eeCCCCccCC
Q 047071 890 LSKTRINCLP 899 (902)
Q Consensus 890 Ls~c~I~~LP 899 (902)
|+++.+.-.+
T Consensus 109 L~~N~~~c~c 118 (170)
T 3g39_A 109 LLNNPWDCAC 118 (170)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCCCCCc
Confidence 9988766444
No 41
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=4.5e-06 Score=98.86 Aligned_cols=85 Identities=19% Similarity=0.109 Sum_probs=71.4
Q ss_pred CCceeeccCCCCCCCC-CcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCcee--ChhhhcCCCCccEEEee
Q 047071 815 GHRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVI--PMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~L--P~sfIg~L~~Lr~LdLs 891 (902)
..+.+...+..+..+| .+..+.+|++|+|++|.+..+|..+.|++|++|+|+ ++.+..+ |.. +++|++|++|+|+
T Consensus 464 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls-~N~l~~~~~p~~-l~~l~~L~~L~L~ 541 (567)
T 1dce_A 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC-NNRLQQSAAIQP-LVSCPRLVLLNLQ 541 (567)
T ss_dssp TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC-SSCCCSSSTTGG-GGGCTTCCEEECT
T ss_pred cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECC-CCCCCCCCCcHH-HhcCCCCCEEEec
Confidence 4566667777788887 688899999999999999889866899999999999 5568888 777 9999999999999
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|.|..+|+.
T Consensus 542 ~N~l~~~~~~ 551 (567)
T 1dce_A 542 GNSLCQEEGI 551 (567)
T ss_dssp TSGGGGSSSC
T ss_pred CCcCCCCccH
Confidence 9999888864
No 42
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.04 E-value=1e-05 Score=80.20 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=67.4
Q ss_pred eeccCCCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 819 LLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 819 l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+...+..+..+|.-. ...|++|+|++|.+..++.. ..+.+|++|+|+ ...|..+|+..+++|.+|++|+|++++|+
T Consensus 14 l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 14 VDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECCCCccC
Confidence 344455677777322 47899999999999998653 899999999999 56799999986799999999999999999
Q ss_pred cCCCC
Q 047071 897 CLPNT 901 (902)
Q Consensus 897 ~LP~s 901 (902)
.+|+.
T Consensus 92 ~~~~~ 96 (170)
T 3g39_A 92 SIPRG 96 (170)
T ss_dssp CCCTT
T ss_pred EeCHH
Confidence 99975
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.04 E-value=1.4e-05 Score=85.01 Aligned_cols=86 Identities=29% Similarity=0.504 Sum_probs=64.5
Q ss_pred CCceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEe
Q 047071 815 GHRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdL 890 (902)
..+.+...+..+..++. +..+.+|++|+|++|.+..+|.. ..+++|++|+|++| .+..+|...++++++|++|+|
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEEC
Confidence 34455555666666663 67788888888888888887764 77888888888844 677888775688888888888
Q ss_pred eCCCCccCCCC
Q 047071 891 SKTRINCLPNT 901 (902)
Q Consensus 891 s~c~I~~LP~s 901 (902)
++|+|..+|..
T Consensus 165 ~~n~l~~~~~~ 175 (272)
T 3rfs_A 165 SYNQLQSLPEG 175 (272)
T ss_dssp CSSCCCCCCTT
T ss_pred CCCCcCccCHH
Confidence 88888887764
No 44
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.03 E-value=3e-06 Score=103.33 Aligned_cols=82 Identities=23% Similarity=0.375 Sum_probs=67.7
Q ss_pred CceeeccCCCCCCCC-CcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 816 HRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
.+.+.+.+..+..+| .+..+.+|++|+|++|.+..+|.. +.|.+|++|+|++ +.|..||.+ |++|.+|++|+|++|
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCC
Confidence 444555566677777 578899999999999999999887 8899999999994 468899998 999999999999999
Q ss_pred CCccCC
Q 047071 894 RINCLP 899 (902)
Q Consensus 894 ~I~~LP 899 (902)
.|..+|
T Consensus 327 ~l~~~~ 332 (727)
T 4b8c_D 327 PLEKQF 332 (727)
T ss_dssp CCCSHH
T ss_pred ccCCCC
Confidence 887544
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.03 E-value=3.7e-05 Score=85.13 Aligned_cols=197 Identities=15% Similarity=0.058 Sum_probs=102.6
Q ss_pred CccccchHHHHHHH---HHhhcCCC--ceEEEEecCCCCChhhHHHHHhhcccccccccEEE-EeeccccCcHHHHHHHH
Q 047071 454 LFVSRSTERTVLKI---LQCISGVE--AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVII-LVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 454 ~~~~VGRe~ele~L---~~~L~~~~--~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~-WV~vs~~~~~~~ll~~I 527 (902)
...++|++..++.+ .+.+.... .+.+.|+|++|+|||+||+.+++.......|-... .-..+......+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQA 122 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHH
Confidence 45679999887764 44444433 35899999999999999999988763222331111 11112223333444444
Q ss_pred HHhcCcC---------------------------C---CCCCcchhhHHHHHhhh-----cCc----eeEEEEccchhh-
Q 047071 528 LRQLPLY---------------------------C---EDSEADSDVAEKLFHFL-----NGK----KFLLLLDDVWEQ- 567 (902)
Q Consensus 528 l~~L~~~---------------------------~---~~~~~~~~l~~~L~~~L-----~~k----r~LLVLDDV~d~- 567 (902)
+...... . ............+.... .++ +.+|+||+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~ 202 (368)
T 3uk6_A 123 FRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD 202 (368)
T ss_dssp HHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB
T ss_pred HHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC
Confidence 3331110 0 00000122222222211 122 359999999864
Q ss_pred -hhhhhhcCCCCCCCCCcEEEEEcccC-------------Ccc-cccCcceeEEecccCHHHHHHHHHHHhcCcccCCCC
Q 047071 568 -INLQEVGIPDPSSENVGKIVVASRTV-------------GAC-LEMDASKLIEVETVSKKEAWELFYEQVGRVIELPHI 632 (902)
Q Consensus 568 -~~~~~L~~~l~~~~~GSkIIVTTR~~-------------~va-~~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l 632 (902)
+....+...+...... .++++|... .+. ........+.+.+++.++...++...+.. ....-.
T Consensus 203 ~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~-~~~~~~ 280 (368)
T 3uk6_A 203 IESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE-EDVEMS 280 (368)
T ss_dssp HHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH-TTCCBC
T ss_pred hHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH-cCCCCC
Confidence 2233332222222222 344444311 110 11122345899999999999999877653 112223
Q ss_pred cchHHHHHHHhC-CCcchhhh
Q 047071 633 QPFAQTIVYGCG-GLPLLIIV 652 (902)
Q Consensus 633 ~~ia~~Ia~~c~-GlPLAL~v 652 (902)
.+....|++.+. |.|-.+..
T Consensus 281 ~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 281 EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHH
Confidence 456788888887 77754443
No 46
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.02 E-value=9.1e-06 Score=83.96 Aligned_cols=84 Identities=18% Similarity=0.351 Sum_probs=61.1
Q ss_pred ceeeccCCCCCCC-C-CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 817 RFLLRAGAGLTEP-P-SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 817 ~~l~~~~~~l~~l-p-~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
+.+...+..+..+ | .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|+..+++|.+|++|+|++
T Consensus 59 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-ANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC-CCCCCEeCHHHcCCCCCCCEEECCC
Confidence 3344444445544 2 567778888888888888888875 678888888888 4567777655588888888888888
Q ss_pred CCCccCCCC
Q 047071 893 TRINCLPNT 901 (902)
Q Consensus 893 c~I~~LP~s 901 (902)
|+|+.+|..
T Consensus 138 N~l~~~~~~ 146 (220)
T 2v9t_B 138 NKLQTIAKG 146 (220)
T ss_dssp SCCSCCCTT
T ss_pred CcCCEECHH
Confidence 888887764
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.02 E-value=9.4e-05 Score=78.67 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=86.9
Q ss_pred cccchHHHHHHHHH-------hhc---CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHH
Q 047071 456 VSRSTERTVLKILQ-------CIS---GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQN 525 (902)
Q Consensus 456 ~~VGRe~ele~L~~-------~L~---~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~ 525 (902)
.++|....+++++. .+. ....+.+.|+|++|+|||+||+.+++.. ...| +.++.+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~--~~~~---~~i~~~~~-------- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES--NFPF---IKICSPDK-------- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH--TCSE---EEEECGGG--------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEeCHHH--------
Confidence 35666665555554 332 3456789999999999999999998864 2222 11222110
Q ss_pred HHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh---------------hhhhhhcCCCCCCCCCcEEEEEc
Q 047071 526 DVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ---------------INLQEVGIPDPSSENVGKIVVAS 590 (902)
Q Consensus 526 ~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~---------------~~~~~L~~~l~~~~~GSkIIVTT 590 (902)
+... ............+......+..+|+||+++.. ..+..+............||.||
T Consensus 101 -----~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 101 -----MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 0000 00000011112222233456889999999764 11222222221122334456666
Q ss_pred ccCCccc---ccC-cceeEEecccCH-HHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 591 RTVGACL---EMD-ASKLIEVETVSK-KEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 591 R~~~va~---~~~-~~~~~~L~~Ls~-ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
....... ..+ -...+.+++++. ++...++.... . -..+....|++.+.|.+
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~-----~~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N-----FKDKERTTIAQQVKGKK 230 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C-----SCHHHHHHHHHHHTTSE
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C-----CCHHHHHHHHHHhcCCC
Confidence 6542211 111 145688888988 66556555421 1 12455778888888853
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.02 E-value=1.7e-05 Score=80.63 Aligned_cols=80 Identities=28% Similarity=0.337 Sum_probs=57.3
Q ss_pred CceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+|. +..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|...++++.+|++|+|+
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY-QNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC-CCccceeCHHHhccCCCccEEEec
Confidence 3444455555666653 56778888888888888877764 678888888888 446777777667788888888888
Q ss_pred CCCCc
Q 047071 892 KTRIN 896 (902)
Q Consensus 892 ~c~I~ 896 (902)
+|.+.
T Consensus 157 ~N~~~ 161 (208)
T 2o6s_A 157 DNPWD 161 (208)
T ss_dssp SCCBC
T ss_pred CCCee
Confidence 87544
No 49
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=1.6e-05 Score=87.69 Aligned_cols=193 Identities=12% Similarity=0.042 Sum_probs=102.9
Q ss_pred CccccchHHHHHHHHHhh-cCCCceEEEEecCCCCChhhHHHHHhhcccccc----cccE--------------------
Q 047071 454 LFVSRSTERTVLKILQCI-SGVEAGKIGIHGISGIGKTTVLKALISYPKTKL----IFDV-------------------- 508 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L-~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~-------------------- 508 (902)
...++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.+++...... .++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 455799999999999998 665544499999999999999999877321000 0110
Q ss_pred EEEeeccccC-cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcE
Q 047071 509 IILVTVSRYW-SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGK 585 (902)
Q Consensus 509 i~WV~vs~~~-~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSk 585 (902)
.+.+..+... ......++++..+..... ..... .+ ..+.+++-++|||++...+ ....+...+.....+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCE
Confidence 0111111100 000012222222111000 00000 00 0023467799999997542 12223222221234567
Q ss_pred EEEEcccCC-cccc-cCcceeEEecccCHHHHHHHHHHHhcCcccCCCC-cchHHHHHHHhCCCcchhhhh
Q 047071 586 IVVASRTVG-ACLE-MDASKLIEVETVSKKEAWELFYEQVGRVIELPHI-QPFAQTIVYGCGGLPLLIIVT 653 (902)
Q Consensus 586 IIVTTR~~~-va~~-~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l-~~ia~~Ia~~c~GlPLAL~vl 653 (902)
+|++|.+.. +... ......+++.+++.++....+...+.... ..-. .+....|++.++|.+-.+..+
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-IQLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CEECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 777776533 3211 12346889999999999999987764311 1112 356788999999988655443
No 50
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.00 E-value=1.5e-05 Score=83.55 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=63.2
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++ .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|...+++|.+|++|+|+
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG-GNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC-CCcCCCcChhHhccCCcccEEECc
Confidence 344455555565555 367788888888888888887754 678888888888 456888888756888888888888
Q ss_pred CCCCccCCC
Q 047071 892 KTRINCLPN 900 (902)
Q Consensus 892 ~c~I~~LP~ 900 (902)
+|+|..+|.
T Consensus 140 ~N~l~~~~~ 148 (251)
T 3m19_A 140 TNQLQSIPA 148 (251)
T ss_dssp SSCCCCCCT
T ss_pred CCcCCccCH
Confidence 888888876
No 51
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.99 E-value=1.5e-05 Score=80.51 Aligned_cols=84 Identities=24% Similarity=0.259 Sum_probs=57.6
Q ss_pred CCceeeccCCCCCCCCC---cccccccEEEeccCCCcccCC-CC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEE
Q 047071 815 GHRFLLRAGAGLTEPPS---LKEWEQAKFIFLMDNELCTLP-EK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLN 889 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~---l~~l~~Lr~L~L~~~~i~~LP-~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~Ld 889 (902)
..+.+...+..+..++. +..+.+|++|+|++|.+..++ .. ..+.+|++|+|+ ...+..+|...+++|++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-CCcCCccCHHHhcCCCCCCEEE
Confidence 33444455555555552 667778888888888777763 33 777888888887 4557777765577788888888
Q ss_pred eeCCCCccCC
Q 047071 890 LSKTRINCLP 899 (902)
Q Consensus 890 Ls~c~I~~LP 899 (902)
|++|+|..++
T Consensus 109 L~~N~l~~~~ 118 (192)
T 1w8a_A 109 LYDNQISCVM 118 (192)
T ss_dssp CCSSCCCEEC
T ss_pred CCCCcCCeeC
Confidence 8888777653
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.98 E-value=2.5e-05 Score=84.21 Aligned_cols=86 Identities=27% Similarity=0.368 Sum_probs=70.4
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...++.+|..++.+|.+|++|+|+
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC-CCcCCccCHHHhcCcCCCCEEECC
Confidence 344555566677766 478888999999999999888875 788999999999 567899998867889999999999
Q ss_pred CCCCccCCCCC
Q 047071 892 KTRINCLPNTF 902 (902)
Q Consensus 892 ~c~I~~LP~sI 902 (902)
+|+|+.+|.++
T Consensus 181 ~N~l~~ip~~~ 191 (290)
T 1p9a_G 181 ENSLYTIPKGF 191 (290)
T ss_dssp SSCCCCCCTTT
T ss_pred CCcCCccChhh
Confidence 99999998764
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.97 E-value=1.2e-05 Score=85.50 Aligned_cols=88 Identities=30% Similarity=0.482 Sum_probs=74.2
Q ss_pred CCCCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEe
Q 047071 813 PEGHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 813 ~~~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdL 890 (902)
....+.+...+..+..++.+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|+..+++|.+|++|+|
T Consensus 62 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC-CCcCCccCHHHhccCCCCCEEEC
Confidence 334556666666777778888999999999999999998874 889999999999 45688888876899999999999
Q ss_pred eCCCCccCCCC
Q 047071 891 SKTRINCLPNT 901 (902)
Q Consensus 891 s~c~I~~LP~s 901 (902)
++|+|..+|..
T Consensus 141 ~~n~l~~~~~~ 151 (272)
T 3rfs_A 141 AHNQLQSLPKG 151 (272)
T ss_dssp CSSCCCCCCTT
T ss_pred CCCccCccCHH
Confidence 99999998864
No 54
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.97 E-value=5.7e-06 Score=82.10 Aligned_cols=83 Identities=24% Similarity=0.164 Sum_probs=65.1
Q ss_pred ceeeccCCCCCCCCCccccc-ccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 817 RFLLRAGAGLTEPPSLKEWE-QAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~-~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
+.+...+..+..+|.+..+. +|++|+|++|.+..++....+++|++|+|+ ++.+..+|+.++++|++|++|+|++|+|
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECC-CCcccccCcchhhcCCCCCEEECCCCcC
Confidence 34444455566677776666 899999999988888666888999999998 5568888887458899999999999988
Q ss_pred ccCCC
Q 047071 896 NCLPN 900 (902)
Q Consensus 896 ~~LP~ 900 (902)
..+|.
T Consensus 101 ~~~~~ 105 (176)
T 1a9n_A 101 VELGD 105 (176)
T ss_dssp CCGGG
T ss_pred Ccchh
Confidence 88775
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.96 E-value=7.7e-06 Score=84.98 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=67.7
Q ss_pred CCCceeeccCCCCCCCC--CcccccccEEEeccCCC-cccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEE
Q 047071 814 EGHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNE-LCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVL 888 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~-i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~L 888 (902)
...+.+...+..+..+| .+..+.+|++|+|++|. +..+|.. ..+++|++|+|++|..++.+|...+++|++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 34455555666666665 36778889999999886 8888864 7888999999987688888887658888899999
Q ss_pred EeeCCCCccCCC
Q 047071 889 NLSKTRINCLPN 900 (902)
Q Consensus 889 dLs~c~I~~LP~ 900 (902)
+|++|+|+.+|.
T Consensus 111 ~l~~n~l~~lp~ 122 (239)
T 2xwt_C 111 GIFNTGLKMFPD 122 (239)
T ss_dssp EEEEECCCSCCC
T ss_pred eCCCCCCccccc
Confidence 998888888875
No 56
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.96 E-value=1.7e-05 Score=81.94 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=37.7
Q ss_pred eeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 819 LLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 819 l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
+...+..+..+|. +..+.+|++|+|++|.+..++.. ..+++|++|+|+ .+.++.+|...+..|.+|++|+|+++.
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY-DNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC-CCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 3333444444442 34455555555555555554332 455555555555 334555554445555555555555553
No 57
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.95 E-value=2.4e-05 Score=85.40 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=100.0
Q ss_pred CccccchHHHHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
...++|.+..++.|.+++..+. ..++.+.|++|+|||++|+.+++... ...+.++.+.. . .+.++..+....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~-~~~i~~~~~~~~ 97 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-K-IDFVRGPLTNFA 97 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-C-HHHHHTHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-C-HHHHHHHHHHHH
Confidence 4567999999999999998654 46778889999999999999987662 12334443331 1 112222111110
Q ss_pred cCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh---hhhhhcCCCCCCCCCcEEEEEcccCC-cccc-cCcceeEEe
Q 047071 533 LYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI---NLQEVGIPDPSSENVGKIVVASRTVG-ACLE-MDASKLIEV 607 (902)
Q Consensus 533 ~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~---~~~~L~~~l~~~~~GSkIIVTTR~~~-va~~-~~~~~~~~L 607 (902)
.. ....+++.+|+||+++... ....+...+.....+.++|+||.... +... ......+.+
T Consensus 98 ~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 98 SA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp HB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred hh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 00 0112467899999997643 33333322222224567777776533 1111 112357899
Q ss_pred cccCHHHHHHHHHH-------HhcCcccCCCCc-chHHHHHHHhCCCcchh
Q 047071 608 ETVSKKEAWELFYE-------QVGRVIELPHIQ-PFAQTIVYGCGGLPLLI 650 (902)
Q Consensus 608 ~~Ls~ees~~LF~~-------~af~~~~~~~l~-~ia~~Ia~~c~GlPLAL 650 (902)
++++.++-.+++.. .+.. ....-.. +....|++.++|.+-.+
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKH-EGIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHhCCCCHHHH
Confidence 99998885443322 2221 1111123 67788899998877643
No 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.94 E-value=1.2e-05 Score=78.73 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=59.4
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCccc-CCCC-CCCCCccEEEeecCCCCceeC--hhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCT-LPEK-PSCSELSVLFLQRNYQLKVIP--MSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~-LP~~-~~L~~Lr~L~Ls~c~~L~~LP--~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++.+..+.+|++|+|++|.+.. +|.. ..+++|++|+|++ +.++.+| .. +++|++|++|+|+
T Consensus 51 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~-l~~l~~L~~L~l~ 128 (168)
T 2ell_A 51 LEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG-NKLKDISTLEP-LKKLECLKSLDLF 128 (168)
T ss_dssp CCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS-SSCCSSGGGGG-GSSCSCCCEEECC
T ss_pred CCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC-CccCcchhHHH-HhcCCCCCEEEee
Confidence 34444455556555667777888888888888777 5555 5588888888884 4677776 45 7888888888888
Q ss_pred CCCCccCCC
Q 047071 892 KTRINCLPN 900 (902)
Q Consensus 892 ~c~I~~LP~ 900 (902)
+|.|..+|.
T Consensus 129 ~N~l~~~~~ 137 (168)
T 2ell_A 129 NCEVTNLND 137 (168)
T ss_dssp SSGGGTSTT
T ss_pred CCcCcchHH
Confidence 887777765
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.94 E-value=6.4e-06 Score=94.53 Aligned_cols=171 Identities=15% Similarity=0.058 Sum_probs=99.1
Q ss_pred HHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccc--cEEEEeeccccCcHHHHHHHHHHhcCcCCCCCC
Q 047071 463 TVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIF--DVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSE 539 (902)
Q Consensus 463 ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F--d~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~ 539 (902)
....+..+....+ ...+.|+|++|+||||||+.+++... ..| ..+++++.. .+..++...+...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~--~~~~~~~v~~v~~~------~~~~~~~~~~~~~----- 182 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITSE------KFLNDLVDSMKEG----- 182 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH--HHCCSSCEEEEEHH------HHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEeeHH------HHHHHHHHHHHcc-----
Confidence 4445555554433 67899999999999999999987652 222 123455433 2333333333211
Q ss_pred cchhhHHHHHhhhcCceeEEEEccchhhh----hhhhhcCCCCC-CCCCcEEEEEcccCCc---------ccccCcceeE
Q 047071 540 ADSDVAEKLFHFLNGKKFLLLLDDVWEQI----NLQEVGIPDPS-SENVGKIVVASRTVGA---------CLEMDASKLI 605 (902)
Q Consensus 540 ~~~~l~~~L~~~L~~kr~LLVLDDV~d~~----~~~~L~~~l~~-~~~GSkIIVTTR~~~v---------a~~~~~~~~~ 605 (902)
. ...+...+..+..+|+|||++... ..+.+...+.. ...|..||+||.+..- ...+.....+
T Consensus 183 ~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i 258 (440)
T 2z4s_A 183 K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVA 258 (440)
T ss_dssp C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCC
T ss_pred c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEE
Confidence 1 122333444467899999997542 12222211110 2346788888876321 1112223578
Q ss_pred EecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhh
Q 047071 606 EVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 606 ~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
.+++++.++-..++...+... ...-..+....|+..+.|.+-.+.
T Consensus 259 ~l~~p~~e~r~~iL~~~~~~~-~~~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 259 KLEPPDEETRKSIARKMLEIE-HGELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp BCCCCCHHHHHHHHHHHHHHH-TCCCCTTHHHHHHHHCCSCHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCHHHHH
Confidence 899999999999998877431 111223567888888888875443
No 60
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=1.4e-05 Score=94.78 Aligned_cols=81 Identities=22% Similarity=0.178 Sum_probs=71.5
Q ss_pred eeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 818 FLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 818 ~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
.+...+..+..+|.+..+.+|+.|+|++|.+..+|.. +.|++|++|+|+ ++.++.+| . +++|++|++|+|++|+|.
T Consensus 445 ~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp-~-l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 445 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVD-G-VANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCG-G-GTTCSSCCEEECCSSCCC
T ss_pred EEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECC-CCCCCCCc-c-cCCCCCCcEEECCCCCCC
Confidence 3445555677788899999999999999999999987 999999999999 56788999 6 999999999999999999
Q ss_pred cC--CCC
Q 047071 897 CL--PNT 901 (902)
Q Consensus 897 ~L--P~s 901 (902)
.+ |.+
T Consensus 522 ~~~~p~~ 528 (567)
T 1dce_A 522 QSAAIQP 528 (567)
T ss_dssp SSSTTGG
T ss_pred CCCCcHH
Confidence 98 664
No 61
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.93 E-value=2.8e-05 Score=81.51 Aligned_cols=79 Identities=29% Similarity=0.438 Sum_probs=46.9
Q ss_pred ccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 821 RAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 821 ~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
..+..+..+| .+..+.+|++|+|++|.+..+|.. ..+.+|++|+|+ ...+..+|...+++|.+|++|||++|+|.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc-CCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 3333444444 345566666666666666666653 556666666666 34566666643666666666666666666
Q ss_pred cCCC
Q 047071 897 CLPN 900 (902)
Q Consensus 897 ~LP~ 900 (902)
.+|.
T Consensus 169 ~~~~ 172 (251)
T 3m19_A 169 SVPH 172 (251)
T ss_dssp CCCT
T ss_pred ccCH
Confidence 6654
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.92 E-value=1.7e-05 Score=85.61 Aligned_cols=85 Identities=22% Similarity=0.256 Sum_probs=68.0
Q ss_pred CceeeccCCCCCCCC-CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 816 HRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
.+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..+.+|++|+|+ ...+..+|...+..|.+|++|+|++
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-CCCCCccChhhcccccCCCEEECCC
Confidence 344555556666777 367788899999999999888754 888999999998 5568888887678899999999999
Q ss_pred CCCccCCCC
Q 047071 893 TRINCLPNT 901 (902)
Q Consensus 893 c~I~~LP~s 901 (902)
|+|+.+|.+
T Consensus 158 N~l~~l~~~ 166 (290)
T 1p9a_G 158 NNLTELPAG 166 (290)
T ss_dssp SCCSCCCTT
T ss_pred CcCCccCHH
Confidence 999998875
No 63
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.92 E-value=1.8e-05 Score=81.77 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=50.1
Q ss_pred eeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 819 LLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 819 l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
+...+..+..++ .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+++..+++|.+|++|+|++|+
T Consensus 62 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT-TSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred EECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC-CCcCCeECHhHcCCCccCCEEECCCCc
Confidence 333444444444 356666777777777777666653 667777777777 444666643337777777777777777
Q ss_pred CccCC
Q 047071 895 INCLP 899 (902)
Q Consensus 895 I~~LP 899 (902)
|+.+|
T Consensus 141 l~~~~ 145 (220)
T 2v70_A 141 ITTVA 145 (220)
T ss_dssp CCCBC
T ss_pred CCEEC
Confidence 77663
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.92 E-value=1.8e-05 Score=85.47 Aligned_cols=150 Identities=15% Similarity=0.074 Sum_probs=84.6
Q ss_pred cccchHHHHHHHHHhhc---------------CCCceEEEEecCCCCChhhHHHHHhhccccccccc--EEEEeeccccC
Q 047071 456 VSRSTERTVLKILQCIS---------------GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFD--VIILVTVSRYW 518 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~---------------~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd--~i~WV~vs~~~ 518 (902)
.++|.+..++.|.+++. ......+.|+|++|+|||+||+.+++......... ..+.++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence 36899988888877653 23445789999999999999998876553211111 122232111
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh-----------hhhhhhcCCCCCCCCCcEEE
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ-----------INLQEVGIPDPSSENVGKIV 587 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~-----------~~~~~L~~~l~~~~~GSkII 587 (902)
+..... ..........+.. .+..+|+||+++.. .....+...+.....+..||
T Consensus 110 ------------l~~~~~-g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 110 ------------LVGQYI-GHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp ------------TCCSST-TCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred ------------hhhhcc-cccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 100000 0011111111111 13469999999843 22333333232334456777
Q ss_pred EEcccC----------CcccccCcceeEEecccCHHHHHHHHHHHhcC
Q 047071 588 VASRTV----------GACLEMDASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 588 VTTR~~----------~va~~~~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
.||... .+... ....+.+++++.++-..++...+..
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 777532 22222 2367899999999999999877643
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.92 E-value=7.2e-06 Score=80.39 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=68.9
Q ss_pred CCceeeccCCCCCC-CCCc-ccccccEEEeccCCCcccCCC--C-CCCCCccEEEeecCCCCceeCh---hhhcCCCCcc
Q 047071 815 GHRFLLRAGAGLTE-PPSL-KEWEQAKFIFLMDNELCTLPE--K-PSCSELSVLFLQRNYQLKVIPM---SFFQFMTSLK 886 (902)
Q Consensus 815 ~~~~l~~~~~~l~~-lp~l-~~l~~Lr~L~L~~~~i~~LP~--~-~~L~~Lr~L~Ls~c~~L~~LP~---sfIg~L~~Lr 886 (902)
..+.+...+..+.. +|.. ..+.+|++|+|++|.+..+|. . ..+++|++|+|++ +.+..+|. ..++.|++|+
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCc
Confidence 34555566666666 6644 458999999999999988873 3 8899999999994 56888887 3389999999
Q ss_pred EEEeeCCCCccCCCC
Q 047071 887 VLNLSKTRINCLPNT 901 (902)
Q Consensus 887 ~LdLs~c~I~~LP~s 901 (902)
+||+++|.+.++|++
T Consensus 151 ~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 151 YLDGYDREDQEAPDS 165 (168)
T ss_dssp EETTEETTSCBCCSS
T ss_pred EecCCCCChhhcccc
Confidence 999999999999975
No 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.91 E-value=5.9e-06 Score=79.36 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=65.8
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCccc-CCCC-CCCCCccEEEeecCCCCceeC--hhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCT-LPEK-PSCSELSVLFLQRNYQLKVIP--MSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~-LP~~-~~L~~Lr~L~Ls~c~~L~~LP--~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++.+..+.+|++|+|++|.+.. +|.. ..+++|++|+|++ +.+..+| .. ++++++|++|+|+
T Consensus 44 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~-N~i~~~~~~~~-~~~l~~L~~L~l~ 121 (149)
T 2je0_A 44 LEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEP-LKKLENLKSLDLF 121 (149)
T ss_dssp CCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-SCCCSHHHHGG-GGGCTTCCEEECT
T ss_pred CcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-CcCCChHHHHH-HhhCCCCCEEeCc
Confidence 34455555566666778888899999999998887 6665 6699999999994 5588776 66 8999999999999
Q ss_pred CCCCccCCC
Q 047071 892 KTRINCLPN 900 (902)
Q Consensus 892 ~c~I~~LP~ 900 (902)
+|.|..+|.
T Consensus 122 ~N~l~~~~~ 130 (149)
T 2je0_A 122 NCEVTNLND 130 (149)
T ss_dssp TCGGGGSTT
T ss_pred CCcccchHH
Confidence 998888875
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.91 E-value=2.9e-05 Score=82.37 Aligned_cols=84 Identities=30% Similarity=0.443 Sum_probs=57.5
Q ss_pred ceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 817 RFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
+.+...+..+..+|. +..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...+..+|...+++|++|++|+|++
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEEECCC
Confidence 344444455555552 45677777777777777777654 677778888887 4556777766567888888888888
Q ss_pred CCCccCCCC
Q 047071 893 TRINCLPNT 901 (902)
Q Consensus 893 c~I~~LP~s 901 (902)
|.|..+|..
T Consensus 143 n~l~~~~~~ 151 (270)
T 2o6q_A 143 NELQSLPKG 151 (270)
T ss_dssp SCCCCCCTT
T ss_pred CcCCccCHh
Confidence 877777754
No 68
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.89 E-value=0.00021 Score=78.46 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=96.9
Q ss_pred cCCccccchHHHHHHHHHhhc------------CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCIS------------GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~------------~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++... ...| +.++.+.-.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~- 83 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLV- 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSC-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHH-
Confidence 344567888888888877652 12346789999999999999999987651 1111 222222110
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhhh-------------hhhhc---CCCCCCCC
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQIN-------------LQEVG---IPDPSSEN 582 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~~-------------~~~L~---~~l~~~~~ 582 (902)
.... . ........+.... ..++.+|+||+++.... ...+. ..+.....
T Consensus 84 -------------~~~~-g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 -------------SKWL-G-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp -------------CSSC-C-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred -------------hhhh-h-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0000 1 1222233333322 35678999999975410 11111 11111223
Q ss_pred CcEEEEEcccCCccc-cc--CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 583 VGKIVVASRTVGACL-EM--DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 583 GSkIIVTTR~~~va~-~~--~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
+..||.||....... .+ .....+.+...+.++-..+|...+.... ..-.......|++.+.|..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-NSLTEADFRELGRKTDGYS 215 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-BCCCHHHHHHHHHTCTTCC
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCCC
Confidence 444555554433211 00 2235678889999999999988775411 1112345677888888763
No 69
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.89 E-value=9.1e-05 Score=81.12 Aligned_cols=173 Identities=14% Similarity=0.083 Sum_probs=97.8
Q ss_pred cCCccccchHHHHHHHHHhhc----------C--CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCIS----------G--VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~----------~--~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++.|...+. . ...+-+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~~---~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH--TCEE---EEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH--CCCE---EEEchH----
Confidence 345667999999999988772 1 234578999999999999999998865 2222 222221
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh-hcCceeEEEEccchhhhh-------------hhhhc---CCCCCCCC
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF-LNGKKFLLLLDDVWEQIN-------------LQEVG---IPDPSSEN 582 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~-L~~kr~LLVLDDV~d~~~-------------~~~L~---~~l~~~~~ 582 (902)
++ ..... .........+... -..++.+|+||+++.... ...+. ..+.....
T Consensus 86 --~l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 --DL----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --HH----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --HH----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 11100 0112222222222 234668999999975411 11221 11112233
Q ss_pred CcEEEEEcccCCccc-cc--CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 583 VGKIVVASRTVGACL-EM--DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 583 GSkIIVTTR~~~va~-~~--~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
+..||.||....... .+ .....+.+...+.++-.++|...+... ...........|++.+.|.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~-~~~~~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT-PCVLTKEDYRTLGAMTEGY 219 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTC-CCCCCHHHHHHHHHTTTTC
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHcCCC
Confidence 455555665432211 00 123567888899999999999887651 1111234567788887774
No 70
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.87 E-value=1.1e-05 Score=98.46 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=71.7
Q ss_pred eeeccCCCCCCCC-CcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 818 FLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 818 ~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
.+.+.+..+..+| .+..+.+|++|+|++|.+..+|.. +.|.+|++|+|+ ++.|..||.+ |++|.+|++|+|++|.|
T Consensus 228 ~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPAE-LGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp EEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSCCSS-GGGGTTCSEEECCSSCC
T ss_pred EEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCccChh-hcCCCCCCEEECCCCCC
Confidence 3444455566676 577899999999999999999986 899999999999 5568899999 99999999999999999
Q ss_pred ccCCCCC
Q 047071 896 NCLPNTF 902 (902)
Q Consensus 896 ~~LP~sI 902 (902)
..||.+|
T Consensus 306 ~~lp~~~ 312 (727)
T 4b8c_D 306 TTLPWEF 312 (727)
T ss_dssp CCCCSST
T ss_pred CccChhh
Confidence 9999864
No 71
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.87 E-value=0.00016 Score=80.45 Aligned_cols=180 Identities=14% Similarity=0.038 Sum_probs=100.0
Q ss_pred cCCccccchHHHHHHHHHhhcC------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCISG------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~~---~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GATF---FSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TCEE---EEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CCeE---EEEehHHhhc
Confidence 3445689999999999887731 345678999999999999999998765 2222 3343332111
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh-hcCceeEEEEccchhhh-------------hhhhhc----CCCCCCC
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF-LNGKKFLLLLDDVWEQI-------------NLQEVG----IPDPSSE 581 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~-L~~kr~LLVLDDV~d~~-------------~~~~L~----~~l~~~~ 581 (902)
.. ..........+... -..++.+|+||+++... .+..+. .......
T Consensus 156 --------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 --------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp --------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred --------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 00111122222222 23567899999996431 111221 1111112
Q ss_pred CCcEEEEEcccCC-ccccc--CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC-cchhhhh
Q 047071 582 NVGKIVVASRTVG-ACLEM--DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL-PLLIIVT 653 (902)
Q Consensus 582 ~GSkIIVTTR~~~-va~~~--~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl-PLAL~vl 653 (902)
.+..||.||.... +...+ .....+.+...+.++...++...+... ...-..+....|++.+.|. +-.+..+
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKE-QCCLSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS-CBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc-CCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 3444555664432 21100 123567888899999999888776431 1111235677888888884 4444443
No 72
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.86 E-value=2.1e-05 Score=81.20 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=54.0
Q ss_pred CceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++. +..+.+|++|+|++|.+..++.. ..+++|++|+|+ ...++.+++..++.|++|++|+|+
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY-DNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT-TSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC-CCcCCEECHHHhcCCCCCCEEEec
Confidence 3444455555666653 66777888888888877776433 777888888887 455777743337788888888887
Q ss_pred CCCCc
Q 047071 892 KTRIN 896 (902)
Q Consensus 892 ~c~I~ 896 (902)
++.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 77543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.84 E-value=4.9e-05 Score=80.56 Aligned_cols=85 Identities=26% Similarity=0.337 Sum_probs=70.1
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...+..+|...+++|++|++|+|+
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC-CCcCCccCHhHccCCcccceeEec
Confidence 344555555666666 467889999999999999988875 789999999999 557889998768999999999999
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|.|..+|..
T Consensus 166 ~n~l~~~~~~ 175 (270)
T 2o6q_A 166 NNQLKRVPEG 175 (270)
T ss_dssp SSCCSCCCTT
T ss_pred CCcCcEeChh
Confidence 9999988864
No 74
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.84 E-value=1.1e-05 Score=77.32 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=59.4
Q ss_pred CCC-CcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCce-eChhhhcCCCCccEEEeeCCCCccCC
Q 047071 828 EPP-SLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKV-IPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 828 ~lp-~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~-LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
.+| .+..+.+|++|++++|.+..++..+.+++|++|+|++ +.+.. +|.. ++++++|++|+|++|.|..+|
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD-NRVSGGLEVL-AEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCS-SCCCSCTHHH-HHHCTTCCEEECTTSCCCSHH
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCC-CcccchHHHH-hhhCCCCCEEECCCCcCCChH
Confidence 445 4578899999999999998886569999999999994 55776 7766 888999999999999998865
No 75
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.83 E-value=4.5e-05 Score=75.45 Aligned_cols=78 Identities=29% Similarity=0.433 Sum_probs=65.0
Q ss_pred cCCCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 822 AGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 822 ~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
.+..+..+|. .-...|+.|+|+++.+..+|.. ..+.+|++|+|+ ...+..+|...+++|.+|++|+|++|+|..+|
T Consensus 15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECC-CCcceEeChhHccCCCccCEEECCCCCccccC
Confidence 3445666662 2246899999999999998875 789999999999 55799999886799999999999999999998
Q ss_pred CC
Q 047071 900 NT 901 (902)
Q Consensus 900 ~s 901 (902)
..
T Consensus 93 ~~ 94 (177)
T 2o6r_A 93 NG 94 (177)
T ss_dssp TT
T ss_pred HH
Confidence 74
No 76
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.80 E-value=2.7e-05 Score=76.59 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=41.1
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999987666778999999999999999998764
No 77
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.80 E-value=4.4e-05 Score=87.76 Aligned_cols=172 Identities=10% Similarity=0.100 Sum_probs=100.9
Q ss_pred CccccchHHHH---HHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 454 LFVSRSTERTV---LKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 454 ~~~~VGRe~el---e~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
...++|.+..+ ..|...+..+....+.|+|++|+||||||+.+++.. ...|-. ++.. .....+ ++.++.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~--~~~f~~---l~a~-~~~~~~-ir~~~~- 96 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA--NADVER---ISAV-TSGVKE-IREAIE- 96 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT--TCEEEE---EETT-TCCHHH-HHHHHH-
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh--CCCeEE---EEec-cCCHHH-HHHHHH-
Confidence 45679999888 778888877777889999999999999999998876 233311 1111 111111 111111
Q ss_pred cCcCCCCCCcchhhHHHHH-hhhcCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEE-EcccCC--cc-cccCcce
Q 047071 531 LPLYCEDSEADSDVAEKLF-HFLNGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVV-ASRTVG--AC-LEMDASK 603 (902)
Q Consensus 531 L~~~~~~~~~~~~l~~~L~-~~L~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIV-TTR~~~--va-~~~~~~~ 603 (902)
... ....+++.+|+||+++... ..+.|...+.. + ...+|. ||.+.. +. .......
T Consensus 97 ----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 97 ----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp ----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred ----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCcee
Confidence 111 1124578899999997542 23333222221 1 223333 544432 11 1122345
Q ss_pred eEEecccCHHHHHHHHHHHhcCc------ccCCCCcchHHHHHHHhCCCcchhh
Q 047071 604 LIEVETVSKKEAWELFYEQVGRV------IELPHIQPFAQTIVYGCGGLPLLII 651 (902)
Q Consensus 604 ~~~L~~Ls~ees~~LF~~~af~~------~~~~~l~~ia~~Ia~~c~GlPLAL~ 651 (902)
.+.+++++.++...++...+... ....-..+....|++.++|.+-.+.
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 78999999999999998876531 1111234567788888988876444
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=0.0001 Score=81.21 Aligned_cols=179 Identities=8% Similarity=0.032 Sum_probs=100.6
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccccccc-EEEEeeccccCcHHHHHHHHHHhcC
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFD-VIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd-~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
....+|.+..++.|...+..+..+.+.++|+.|+||||+|+.+++.... ..+. .+..++.+.......+ ++++..+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~i-r~~i~~~~ 101 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVV-RNQIKDFA 101 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHH-HHHHHHHH
Confidence 3456899999999998888776555899999999999999999876421 1111 1222333222222111 11111110
Q ss_pred cCCCCCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCC-ccc-ccCcceeEEec
Q 047071 533 LYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVG-ACL-EMDASKLIEVE 608 (902)
Q Consensus 533 ~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~-va~-~~~~~~~~~L~ 608 (902)
.. ...+.+.+-++|+|+++.. .....+...+.......++|++|.... +.. .......+.+.
T Consensus 102 ~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 102 ST--------------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HB--------------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hh--------------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 00 0001234678999999753 222233222211224456666664322 211 11223578899
Q ss_pred ccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcch
Q 047071 609 TVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLL 649 (902)
Q Consensus 609 ~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLA 649 (902)
+++.++....+...+.. ....-..+....|++.++|.+--
T Consensus 168 ~l~~~~~~~~l~~~~~~-~~~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVH-EKLKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp CCCHHHHHHHHHHHHHT-TTCCBCHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHH
Confidence 99999988888776632 11111234677889999998864
No 79
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.77 E-value=4.1e-05 Score=77.45 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=67.1
Q ss_pred eeccCCCCCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 819 LLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 819 l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
+...+..+..+|.- -...|++|+|+++.+..+|.. ..+.+|++|+|+ ...|..+|...|.+|.+|++|+|++|+|..
T Consensus 15 l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 15 VRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 34445566777742 136899999999999999966 899999999999 667889987669999999999999999999
Q ss_pred CCCC
Q 047071 898 LPNT 901 (902)
Q Consensus 898 LP~s 901 (902)
+|+.
T Consensus 93 i~~~ 96 (193)
T 2wfh_A 93 IPPR 96 (193)
T ss_dssp CCTT
T ss_pred eCHH
Confidence 9863
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.77 E-value=3.3e-05 Score=85.77 Aligned_cols=83 Identities=19% Similarity=0.385 Sum_probs=53.0
Q ss_pred ceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhh---cCCCCccEEE
Q 047071 817 RFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFF---QFMTSLKVLN 889 (902)
Q Consensus 817 ~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfI---g~L~~Lr~Ld 889 (902)
+.+.+.+..+..++ .+..+.+|++|+|++|.+..++.. ..+.+|++|+|+ .+.+..+|..++ ++|.+|++||
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCGGGTC----CTTCCEEE
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC-CCcCCeeCHHHhcCcccCCcCCEEE
Confidence 33444444455544 256677777777777777766433 677777777777 456777777634 5677777777
Q ss_pred eeCCCCccCCC
Q 047071 890 LSKTRINCLPN 900 (902)
Q Consensus 890 Ls~c~I~~LP~ 900 (902)
|++|+|..+|.
T Consensus 170 L~~N~l~~l~~ 180 (361)
T 2xot_A 170 LSSNKLKKLPL 180 (361)
T ss_dssp CCSSCCCCCCH
T ss_pred CCCCCCCccCH
Confidence 77777777763
No 81
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.76 E-value=3.6e-05 Score=84.69 Aligned_cols=83 Identities=24% Similarity=0.240 Sum_probs=51.2
Q ss_pred ceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 817 RFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 817 ~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
+.+...+..+..+| .+..+.+|++|+|++|.+..++.. ..+++|++|+|+ .+.++.+|...++++++|++|+|++
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC-CCcCCcCCHhHhCCCccCCEEECCC
Confidence 33444444444444 356666777777777766665432 666777777776 4456666665566677777777777
Q ss_pred CCCccCCC
Q 047071 893 TRINCLPN 900 (902)
Q Consensus 893 c~I~~LP~ 900 (902)
|+|..+|.
T Consensus 134 n~l~~l~~ 141 (353)
T 2z80_A 134 NPYKTLGE 141 (353)
T ss_dssp CCCSSSCS
T ss_pred CCCcccCc
Confidence 76666665
No 82
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.76 E-value=2.2e-05 Score=87.59 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=60.6
Q ss_pred ceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 817 RFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 817 ~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
+.+...+..+..++ .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|...++++++|++|+|++
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC-CCccCcCCHHHhcCCCCCcEEECCC
Confidence 34444444555543 467778888888888888777654 788888888888 4567888887558888888888888
Q ss_pred CCCccCCC
Q 047071 893 TRINCLPN 900 (902)
Q Consensus 893 c~I~~LP~ 900 (902)
|+|..+|+
T Consensus 151 n~l~~~~~ 158 (390)
T 3o6n_A 151 NNLERIED 158 (390)
T ss_dssp SCCCBCCT
T ss_pred CccCccCh
Confidence 88877765
No 83
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.76 E-value=0.00033 Score=80.37 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=98.7
Q ss_pred ccCCccccchHHHHHHHHHhhc------------CCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 451 EFGLFVSRSTERTVLKILQCIS------------GVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~------------~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
......++|.+..++.|...+. ....+-|.|+|++|+|||+||+.+++... .. -|+.++..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~~-----~~~~v~~~- 202 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS-----TFFSISSS- 202 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-SS-----EEEEECCC-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-CC-----CEEEEeHH-
Confidence 3445668999999999988762 12346789999999999999999987651 11 12222221
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh-hcCceeEEEEccchhhh-------------hhhhhcCCCCC---CC
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF-LNGKKFLLLLDDVWEQI-------------NLQEVGIPDPS---SE 581 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~-L~~kr~LLVLDDV~d~~-------------~~~~L~~~l~~---~~ 581 (902)
++..... + ........+... -..++.+|+||+++... ....+...+.. ..
T Consensus 203 ---~l~~~~~---g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 203 ---DLVSKWL---G-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ---HHHhhhc---c-------hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 1111110 0 011112222222 23567899999997541 12223333322 23
Q ss_pred CCcEEEEEcccCCccc-c-c-CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 582 NVGKIVVASRTVGACL-E-M-DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 582 ~GSkIIVTTR~~~va~-~-~-~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
.+..||.||....... . . .....+.+...+.++-..+|...+..... .-.......|++.+.|..
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SLTEADFQELGRKTDGYS 337 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-ECCHHHHHHHHHHTTTCC
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHcCCCC
Confidence 4555666665432211 0 0 12356788888889899999887754111 112345677888888843
No 84
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.75 E-value=0.0004 Score=74.54 Aligned_cols=175 Identities=12% Similarity=0.047 Sum_probs=97.5
Q ss_pred cCCccccchHHHHHHHHHhhcC------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCISG------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~~---~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SATF---LNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCEE---EEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe---EEeeHHHHhh
Confidence 3445679999999999887732 235688999999999999999998765 2222 2233222110
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhhh-------------hhhh---cCCCCCC--
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQIN-------------LQEV---GIPDPSS-- 580 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~~-------------~~~L---~~~l~~~-- 580 (902)
.. ..........+.. ....++.+|+||+++.... ...+ ...++..
T Consensus 93 --------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 --------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 0011222222222 2245678999999975410 0011 1111111
Q ss_pred CCCcEEEEEcccCCccc-cc--CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 581 ENVGKIVVASRTVGACL-EM--DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 581 ~~GSkIIVTTR~~~va~-~~--~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
+.+..||.||....... .. .....+.+...+.++...++...+... ...-.......|++.+.|.+-
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~-~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQ-GSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGG-SCCSCHHHHHHHHHHTTTCCH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHcCCCCH
Confidence 23345555665432211 00 123567788888888888887766431 111223457788888888775
No 85
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.74 E-value=0.00013 Score=81.21 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=96.7
Q ss_pred cCCccccchHHHHHHHHHhhcC------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCISG------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++.|...+.. ...+-|.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHH----
Confidence 3456679999999998887621 123468899999999999999998866 2222 222211
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh-hcCceeEEEEccchhhhh-------------hhhhcCC---CCCCCC
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF-LNGKKFLLLLDDVWEQIN-------------LQEVGIP---DPSSEN 582 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~-L~~kr~LLVLDDV~d~~~-------------~~~L~~~---l~~~~~ 582 (902)
++ ..... . ........+... -..++.+|+||+++.... ...+... +.....
T Consensus 119 --~l----~~~~~-----g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 --DL----VSKWM-----G-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp --HH----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred --HH----hhhhc-----c-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 11110 0 112222223222 235788999999985420 1122111 111123
Q ss_pred CcEEEEEcccCCccc-c--cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 583 VGKIVVASRTVGACL-E--MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 583 GSkIIVTTR~~~va~-~--~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
+..||.||....... . -.....+.+...+.++-..+|...+.... ..-.......|++.+.|.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~~~~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-SVLTKEDYRTLGAMTEGY 252 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-BCCCHHHHHHHHHHTTTC
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHcCCC
Confidence 445555664432111 0 02235678899999999999988775421 111234567888888874
No 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.73 E-value=5.5e-05 Score=86.06 Aligned_cols=82 Identities=24% Similarity=0.293 Sum_probs=58.5
Q ss_pred eeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 819 LLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 819 l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..+++|++|+|++|..+..+|...+++|.+|++|+|++|+
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 334444455555 366777888888888877777764 6777888888887777777777657777777777777777
Q ss_pred CccCCC
Q 047071 895 INCLPN 900 (902)
Q Consensus 895 I~~LP~ 900 (902)
|+.+|.
T Consensus 197 l~~~~~ 202 (440)
T 3zyj_A 197 LREIPN 202 (440)
T ss_dssp CSSCCC
T ss_pred Cccccc
Confidence 777763
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.72 E-value=6.7e-05 Score=85.62 Aligned_cols=84 Identities=25% Similarity=0.263 Sum_probs=65.1
Q ss_pred ceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 817 RFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 817 ~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..+++|++|+|++|..+..+|...+++|.+|++|+|++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 34444445556665 367788889999998888888874 78888888888888888888886688888888888888
Q ss_pred CCCccCCC
Q 047071 893 TRINCLPN 900 (902)
Q Consensus 893 c~I~~LP~ 900 (902)
|+|..+|.
T Consensus 206 n~l~~~~~ 213 (452)
T 3zyi_A 206 CNIKDMPN 213 (452)
T ss_dssp SCCSSCCC
T ss_pred Cccccccc
Confidence 88887764
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.72 E-value=4.6e-05 Score=82.66 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 814 EGHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
...+.+...+..+..++.+..+.+|++|+|++|.+..+|....+++|++|+|+ .+.+..+|. +++|++|++|+|++|
T Consensus 63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT-STQITDVTP--LAGLSNLQVLYLDLN 139 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT-TSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC-CCCCCCchh--hcCCCCCCEEECCCC
Confidence 34455666666677777788888889999988888888767888899999998 445777775 788999999999998
Q ss_pred CCccCCC
Q 047071 894 RINCLPN 900 (902)
Q Consensus 894 ~I~~LP~ 900 (902)
.|..+|.
T Consensus 140 ~l~~~~~ 146 (308)
T 1h6u_A 140 QITNISP 146 (308)
T ss_dssp CCCCCGG
T ss_pred ccCcCcc
Confidence 8887763
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.71 E-value=5.2e-05 Score=76.48 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=41.7
Q ss_pred CCcccccccEEEeccCCCccc-CCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 830 PSLKEWEQAKFIFLMDNELCT-LPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 830 p~l~~l~~Lr~L~L~~~~i~~-LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
+.+..+.+|++|+|++|.+.. .|.. ..+++|++|+|++|..+..+| . +++|++|++|+|++|.|..+|
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTBCCCCCT
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCCCCcChH
Confidence 345566666666666666654 2332 666666677776554466666 3 666777777777766666554
No 90
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.71 E-value=0.0003 Score=79.03 Aligned_cols=175 Identities=14% Similarity=0.063 Sum_probs=96.2
Q ss_pred cCCccccchHHHHHHHHHhhcC------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCISG------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++.|...+.. ...+-+.|+|++|+|||+||+.+++.. ...| +.++.+.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~~~---~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NATF---FNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TCEE---EEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cCcE---EEeeHHHhhc
Confidence 3456679999999999888721 234678999999999999999998765 2222 2333322111
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhh-------------hhhhhcCC---CCC-CC
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQI-------------NLQEVGIP---DPS-SE 581 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~-------------~~~~L~~~---l~~-~~ 581 (902)
. . .. ........+.... ...+.+|+||+++... ....+... +.. ..
T Consensus 187 ~------~---------~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 K------Y---------VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c------c---------cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 0 00 1112222222222 3456799999997540 01111111 111 11
Q ss_pred CCcEEEEEcccCC-cccc-c-CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 582 NVGKIVVASRTVG-ACLE-M-DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 582 ~GSkIIVTTR~~~-va~~-~-~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
....||.||.... +... . .....+.+...+.++...++...+.. ....-..+....|++.+.|..-
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~-~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK-QGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT-SCCCSCHHHHHHHHHHTTTCCH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHcCCCCH
Confidence 2334454554322 2110 1 12346888999999999999887754 1122233467788888888543
No 91
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.70 E-value=0.00027 Score=77.78 Aligned_cols=180 Identities=10% Similarity=-0.021 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhcCCC-ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhc-------C
Q 047071 461 ERTVLKILQCISGVE-AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQL-------P 532 (902)
Q Consensus 461 e~ele~L~~~L~~~~-~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L-------~ 532 (902)
+...+.+.+.+..+. ...+.++|+.|+|||++|+.+++.......-+ + .++........+...- .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~----~~c~~c~~c~~~~~~~~~d~~~~~ 80 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---H----KSCGHCRGCQLMQAGTHPDYYTLA 80 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---T----BCCSCSHHHHHHHHTCCTTEEEEC
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---C----CCCCCCHHHHHHhcCCCCCEEEEe
Confidence 445667777776655 45799999999999999999876542111000 0 0000000001111000 0
Q ss_pred cCC-CCCCcchhhHHHHHhhh-----cCceeEEEEccchhhh--hhhhhcCCCCCCCCCcEEEEEcccCC-ccc-ccCcc
Q 047071 533 LYC-EDSEADSDVAEKLFHFL-----NGKKFLLLLDDVWEQI--NLQEVGIPDPSSENVGKIVVASRTVG-ACL-EMDAS 602 (902)
Q Consensus 533 ~~~-~~~~~~~~l~~~L~~~L-----~~kr~LLVLDDV~d~~--~~~~L~~~l~~~~~GSkIIVTTR~~~-va~-~~~~~ 602 (902)
... ......++ ...+.+.+ .+++-++|+|+++... ....+...+.....++.+|++|.+.. +.. .....
T Consensus 81 ~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc 159 (334)
T 1a5t_A 81 PEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (334)
T ss_dssp CCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred ccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc
Confidence 000 00011111 12222222 3567899999998642 23334333333334566776665542 321 12234
Q ss_pred eeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhhhc
Q 047071 603 KLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIVTG 654 (902)
Q Consensus 603 ~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~vlg 654 (902)
..+++.+++.++....+..... -..+.+..+++.++|.|..+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREVT------MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred eeeeCCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 6899999999999998887651 123456789999999997665543
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.69 E-value=4.9e-05 Score=86.74 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=31.7
Q ss_pred cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC-CCccCC
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-RINCLP 899 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~I~~LP 899 (902)
+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|...+.+|++|++|+|++| .+..+|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 34444455555555544444432 445555555555 23344444433455555555555553 444443
No 93
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.69 E-value=0.00073 Score=73.19 Aligned_cols=175 Identities=12% Similarity=0.066 Sum_probs=97.1
Q ss_pred cCCccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 452 FGLFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
.....++|.+..+++|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ...| +.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~~---i~v~----- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF---ISIK----- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCEE---EEEC-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCCE---EEEE-----
Confidence 3445678988888888776632 345678999999999999999999866 2222 2222
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh----------------hhhhcCCCC--CC
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN----------------LQEVGIPDP--SS 580 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~----------------~~~L~~~l~--~~ 580 (902)
..++...+... ........+.......+.+|+||+++.... ...+...+. ..
T Consensus 82 -~~~l~~~~~g~---------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 -GPELLTMWFGE---------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp -HHHHHHHHHTT---------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred -hHHHHhhhcCc---------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 22232222211 111222223333345678999999974210 111211111 11
Q ss_pred CCCcEEEEEcccCCcc-cc-c---CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 581 ENVGKIVVASRTVGAC-LE-M---DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 581 ~~GSkIIVTTR~~~va-~~-~---~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
..+..||.||...... .. . .-...+.+...+.++-.+++...+....... ......++..+.|.|-
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~--~~~~~~la~~~~g~sg 222 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK--DVDLEFLAKMTNGFSG 222 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCS--SCCHHHHHHTCSSCCH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCc--cchHHHHHHHcCCCCH
Confidence 2345566666544221 11 1 1235788999999999999887765411111 1123456666666653
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.69 E-value=7.3e-05 Score=84.99 Aligned_cols=85 Identities=26% Similarity=0.328 Sum_probs=68.8
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
.+.+...+..+..+|.+..+.+|+.|+|++|.+..++.. ..+++|++|+|+ .+.+..++...+.+|++|++|||++|
T Consensus 187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI-QSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECC-CCceeEEChhhhcCCCCCCEEECCCC
Confidence 344555566677888888899999999999988887543 889999999998 55688887766889999999999999
Q ss_pred CCccCCCC
Q 047071 894 RINCLPNT 901 (902)
Q Consensus 894 ~I~~LP~s 901 (902)
+|..+|..
T Consensus 266 ~l~~~~~~ 273 (440)
T 3zyj_A 266 NLTLLPHD 273 (440)
T ss_dssp CCCCCCTT
T ss_pred CCCccChh
Confidence 99988864
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.69 E-value=5.6e-05 Score=83.82 Aligned_cols=83 Identities=28% Similarity=0.311 Sum_probs=61.7
Q ss_pred eeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 818 FLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 818 ~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
.+...+..+..++ .+..+.+|++|+|++|.+..+|.. ..+.+|++|+|+ .+.+..+++..|++|.+|++|+|++|
T Consensus 68 ~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY-NNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC-CCcccEECHHHhCCcccCCEEECCCC
Confidence 3444444555554 367778888888888888887764 788888888888 55577775544888888888888888
Q ss_pred CCccCCCC
Q 047071 894 RINCLPNT 901 (902)
Q Consensus 894 ~I~~LP~s 901 (902)
+|..+|..
T Consensus 147 ~l~~l~~~ 154 (361)
T 2xot_A 147 QISRFPVE 154 (361)
T ss_dssp CCCSCCGG
T ss_pred cCCeeCHH
Confidence 88888864
No 96
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.67 E-value=0.00022 Score=82.37 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccc---ccc-c-EEEEeeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTK---LIF-D-VIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr---~~F-d-~i~WV~vs~~~~~~~ll~~I 527 (902)
..+++|||+.+++.++..|......-+.|+|++|+|||+||+.+++..... ... + ..+.++++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 346789999999999999976555567899999999999999998764210 001 1 11222222
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCc------c-cccC
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGA------C-LEMD 600 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~v------a-~~~~ 600 (902)
... ...........+...-..++.+|++| ...+....+...+. ....++|.+|..... . ....
T Consensus 246 -~~~-----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 246 -TKY-----RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -ccc-----cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 000 00001111222222223567899999 22222233333332 123456655554431 1 1111
Q ss_pred cceeEEecccCHHHHHHHHHHHhcC
Q 047071 601 ASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 601 ~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
....+.+++++.++...++...+..
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHHH
Confidence 2357899999999999999876643
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.67 E-value=3.6e-05 Score=91.34 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=66.3
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++ .+..+.+|++|+|++|.+..+|.. +.+++|++|+|+ ++.+..+|+.++++|++|++|+|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee-CCCCCCCCHHHhccCCCCCEEEee
Confidence 344455555565554 577888899999999988887764 788999999998 456888888856899999999999
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|.|..+|+.
T Consensus 156 ~N~l~~~~~~ 165 (597)
T 3oja_B 156 NNNLERIEDD 165 (597)
T ss_dssp SSCCCBCCTT
T ss_pred CCcCCCCChh
Confidence 9988887753
No 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.67 E-value=6e-05 Score=82.33 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=46.1
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
.+.+...+..+..++.+..+.+|++|+|++|.+..+|....+++|++|+|+ .+.+..+|. +.++++|++|+|++|
T Consensus 68 L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~-~n~i~~~~~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 68 LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN-EDNISDISP--LANLTKMYSLNLGAN 142 (347)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT-TSCCCCCGG--GTTCTTCCEEECTTC
T ss_pred ccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc-CCcccCchh--hccCCceeEEECCCC
Confidence 344444444555555566666666666666666666555666666666666 344566655 566666666666666
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.66 E-value=6.3e-05 Score=81.00 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=67.4
Q ss_pred CCCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 814 EGHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
...+.+...+..+..++.+..+.+|++|+|++|.+..+|....+++|++|+|+ ++.+..+| . +++|++|++|+|++|
T Consensus 68 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~i~~~~-~-l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE-HNGISDIN-G-LVHLPQLESLYLGNN 144 (291)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT-TSCCCCCG-G-GGGCTTCCEEECCSS
T ss_pred CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECC-CCcCCCCh-h-hcCCCCCCEEEccCC
Confidence 34555666666777777788889999999999998888888889999999999 45678875 4 889999999999999
Q ss_pred CCccCC
Q 047071 894 RINCLP 899 (902)
Q Consensus 894 ~I~~LP 899 (902)
+|..+|
T Consensus 145 ~l~~~~ 150 (291)
T 1h6t_A 145 KITDIT 150 (291)
T ss_dssp CCCCCG
T ss_pred cCCcch
Confidence 887764
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.66 E-value=5.7e-05 Score=76.22 Aligned_cols=83 Identities=11% Similarity=0.100 Sum_probs=66.7
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCccc-CCCC-CCCCCccEEEeecCCCCc-eeChhhhcCCCCccEEEee
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCT-LPEK-PSCSELSVLFLQRNYQLK-VIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~-LP~~-~~L~~Lr~L~Ls~c~~L~-~LP~sfIg~L~~Lr~LdLs 891 (902)
..+.+...+..+..++.+..+++|++|++++|.+.. .|.. ..|++|++|+|++|. +. ..|.. +++|++|++|+|+
T Consensus 67 ~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~-l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 67 NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTK-INTLPKVNSIDLS 144 (197)
T ss_dssp TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHH-HTTCSSCCEEECC
T ss_pred CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHhHHH-HhhCCCCCEEEcc
Confidence 445555566667777788889999999999999876 4444 899999999999554 55 46776 9999999999999
Q ss_pred CCC-CccCC
Q 047071 892 KTR-INCLP 899 (902)
Q Consensus 892 ~c~-I~~LP 899 (902)
+|. +..+|
T Consensus 145 ~n~~i~~~~ 153 (197)
T 4ezg_A 145 YNGAITDIM 153 (197)
T ss_dssp SCTBCCCCG
T ss_pred CCCCccccH
Confidence 996 88876
No 101
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.64 E-value=8.7e-05 Score=81.03 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=91.7
Q ss_pred HHHHHHHHhhcCC--CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCC
Q 047071 462 RTVLKILQCISGV--EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSE 539 (902)
Q Consensus 462 ~ele~L~~~L~~~--~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~ 539 (902)
.....+..++..+ ....+.|+|++|+||||||+.+++..... .+ .+++++.. ++...+...+...
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHHHHHHcC-----
Confidence 3344555555443 34678999999999999999998765321 11 23445432 2233333322110
Q ss_pred cchhhHHHHHhhhcCceeEEEEccchhhh---h-hhhhcCCCCC-CCCCcEEEEEcccCCc-----c----cccCcceeE
Q 047071 540 ADSDVAEKLFHFLNGKKFLLLLDDVWEQI---N-LQEVGIPDPS-SENVGKIVVASRTVGA-----C----LEMDASKLI 605 (902)
Q Consensus 540 ~~~~l~~~L~~~L~~kr~LLVLDDV~d~~---~-~~~L~~~l~~-~~~GSkIIVTTR~~~v-----a----~~~~~~~~~ 605 (902)
. ...+...+. +..+|+||+++... . ...+...+.. ...|..||+||.+..- . ..+.....+
T Consensus 88 ~----~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 88 T----INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp C----HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred c----HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 1 111222222 36799999997643 1 1222211110 1235578888764321 1 111223678
Q ss_pred EecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcc
Q 047071 606 EVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPL 648 (902)
Q Consensus 606 ~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPL 648 (902)
.+++ +.++...++...+.. ....-..+....|++.+ |..-
T Consensus 163 ~l~~-~~~e~~~il~~~~~~-~~~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKE-FNLELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHC-SSHH
T ss_pred EeCC-CHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHhC-CCHH
Confidence 9999 999999999887753 11122245677788888 7654
No 102
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.64 E-value=8e-05 Score=78.87 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=37.8
Q ss_pred cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...+..++...++++++|++|+|++|.|..
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECC-CCCccccCchhcccCCCCCEEECcCCccce
Confidence 45555666666666665555432 556666666666 334555555226666666666666666654
No 103
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.63 E-value=9.2e-05 Score=78.79 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=46.0
Q ss_pred CcccccccEEEeccCCC-cccCCC-C-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 831 SLKEWEQAKFIFLMDNE-LCTLPE-K-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~-i~~LP~-~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
.+..+.+|++|+|++|. +..++. . ..+++|++|+|++ +.+..+|+..++++++|++|+|++|+|..+|.
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC-CcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 45566677777777775 666633 3 6677777777773 44556644447777777777777777777665
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.61 E-value=0.00011 Score=79.71 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+...+..+..++.+..+.+|++|+|++|.+..+|....+++|++|+|+ .+.+..+|. +++|++|++|+|++|+
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 86 KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD-LNQITNISP--LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred CCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECC-CCccCcCcc--ccCCCCccEEEccCCc
Confidence 4455666677778888888999999999999999998888999999999999 556888887 8999999999999999
Q ss_pred CccCCC
Q 047071 895 INCLPN 900 (902)
Q Consensus 895 I~~LP~ 900 (902)
|..+|.
T Consensus 163 l~~~~~ 168 (308)
T 1h6u_A 163 VSDLTP 168 (308)
T ss_dssp CCCCGG
T ss_pred CCCChh
Confidence 888774
No 105
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.60 E-value=9e-05 Score=87.87 Aligned_cols=85 Identities=25% Similarity=0.283 Sum_probs=69.8
Q ss_pred CCceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEe
Q 047071 815 GHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdL 890 (902)
..+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. +.+++|++|+|++| .+..+|+..|++|++|++|+|
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEEC
Confidence 3455556666677766 468899999999999999999875 79999999999954 677777655999999999999
Q ss_pred eCCCCccCCC
Q 047071 891 SKTRINCLPN 900 (902)
Q Consensus 891 s~c~I~~LP~ 900 (902)
++|.|..+|.
T Consensus 179 ~~N~l~~~~~ 188 (597)
T 3oja_B 179 SSNRLTHVDL 188 (597)
T ss_dssp TTSCCSBCCG
T ss_pred cCCCCCCcCh
Confidence 9999988764
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.60 E-value=4.3e-05 Score=81.13 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+...+..+..+|.+..+.+|++|+|++|.+..+|....|++|++|+|+ ++.+..+|.. .. .+|++|+|++|+
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~-~N~l~~l~~~--~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN-RNRLKNLNGI--PS-ACLSRLFLDNNE 117 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC-SSCCSCCTTC--CC-SSCCEEECCSSC
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC-CCccCCcCcc--cc-CcccEEEccCCc
Confidence 3445555666677788888888999999999988888878888999999998 5568888874 34 899999999998
Q ss_pred CccCC
Q 047071 895 INCLP 899 (902)
Q Consensus 895 I~~LP 899 (902)
|..+|
T Consensus 118 l~~~~ 122 (263)
T 1xeu_A 118 LRDTD 122 (263)
T ss_dssp CSBSG
T ss_pred cCCCh
Confidence 88775
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.60 E-value=5.7e-05 Score=78.37 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCCCCCcccccccE---EEeccCC-CcccCCCC--CCCCCcc-EEEeecCCCCceeChhhhcCCCCccEEEeeCC-CCcc
Q 047071 826 LTEPPSLKEWEQAK---FIFLMDN-ELCTLPEK--PSCSELS-VLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-RINC 897 (902)
Q Consensus 826 l~~lp~l~~l~~Lr---~L~L~~~-~i~~LP~~--~~L~~Lr-~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~I~~ 897 (902)
+..+|.+..+..|+ +|++++| .+..+|.. ..+.+|+ +|+|+ ...++.+|.. +....+|++|+|++| .|+.
T Consensus 117 l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~-~n~l~~i~~~-~~~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 117 LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY-NNGFTSVQGY-AFNGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC-SCCCCEECTT-TTTTCEEEEEECTTCTTCCE
T ss_pred CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC-CCCCcccCHh-hcCCCCCCEEEcCCCCCccc
Confidence 33344333444443 5555555 55555442 4455555 55555 3334455554 222355555555555 3555
Q ss_pred CCC
Q 047071 898 LPN 900 (902)
Q Consensus 898 LP~ 900 (902)
+|.
T Consensus 195 i~~ 197 (239)
T 2xwt_C 195 IDK 197 (239)
T ss_dssp ECT
T ss_pred CCH
Confidence 543
No 108
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.59 E-value=8.7e-05 Score=86.52 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=35.8
Q ss_pred cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
+.++.+|++|+|++|.+..+|.. ..+.+|++|+|+ .+.+..+|...+++|++|++|+|++|.+..
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCSCTTCTTCCEEECCSSCCCC
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc-ccccccCCCccccccccccEEecCCCccce
Confidence 44555555555555555555432 555566666665 334555554225666666666666665553
No 109
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.59 E-value=7.8e-05 Score=87.91 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=38.7
Q ss_pred cccccccEEEeccCCCcccC-CCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 832 LKEWEQAKFIFLMDNELCTL-PEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~L-P~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+.++++|++|+|++|.+..+ |.. .+|++|++|+|+ .+.+..+|+..+++|.+|++|+|++|.+.
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV-ETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT-TSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred hhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc-CCccccccccccCCCCCCCEEeCCCCccc
Confidence 55566666666666666665 333 666666666666 33455555322666666666666666665
No 110
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.59 E-value=0.00015 Score=78.89 Aligned_cols=64 Identities=22% Similarity=0.429 Sum_probs=30.1
Q ss_pred cccccccEEEeccCCCcccC-CCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 832 LKEWEQAKFIFLMDNELCTL-PEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~L-P~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
+..+.+|++|+|++|.+..+ |.. ..+++|++|+|+ .+.++.+|.. +. .+|++|+|++|+|..+|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~l~~~-~~--~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KNQLKELPEK-MP--KTLQELRVHENEITKVR 137 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCSBCCSS-CC--TTCCEEECCSSCCCBBC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC-CCcCCccChh-hc--ccccEEECCCCcccccC
Confidence 44445555555555544444 222 445555555555 2334455544 22 44555555555444443
No 111
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.58 E-value=0.00011 Score=81.76 Aligned_cols=85 Identities=25% Similarity=0.276 Sum_probs=67.9
Q ss_pred CCceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEe
Q 047071 815 GHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdL 890 (902)
..+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...+..+|+..+++|++|++|+|
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC-CCccCccChhhccCCCCCCEEEC
Confidence 3444555555666664 368899999999999999999975 789999999999 45677776655899999999999
Q ss_pred eCCCCccCCC
Q 047071 891 SKTRINCLPN 900 (902)
Q Consensus 891 s~c~I~~LP~ 900 (902)
++|+|..+|.
T Consensus 173 ~~n~l~~~~~ 182 (390)
T 3o6n_A 173 SSNRLTHVDL 182 (390)
T ss_dssp CSSCCSBCCG
T ss_pred CCCcCCcccc
Confidence 9998887653
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.58 E-value=6.3e-05 Score=88.36 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=41.3
Q ss_pred eccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCce--eChhhhcCCCCccEEEeeCC
Q 047071 820 LRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKV--IPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 820 ~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~--LP~sfIg~L~~Lr~LdLs~c 893 (902)
...+..+..+| .+..+.+|++|+|++|.+..+|.. +.|++|++|+|+++ .+.. +|.. +++|.+|++|+|++|
T Consensus 106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSN 183 (635)
T ss_dssp ECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSS
T ss_pred EccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCc
Confidence 33344444444 245555666666666665555543 55666666666532 3332 3443 566666666666666
Q ss_pred CCccCC
Q 047071 894 RINCLP 899 (902)
Q Consensus 894 ~I~~LP 899 (902)
+|+.+|
T Consensus 184 ~l~~~~ 189 (635)
T 4g8a_A 184 KIQSIY 189 (635)
T ss_dssp CCCEEC
T ss_pred cccccc
Confidence 555544
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.57 E-value=7.5e-05 Score=80.42 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=61.2
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+...+..+..++.+..+.+|+.|+|++|.+..++....+++|++|+|+ ++.+..+|+ +++|++|++|+|++|.
T Consensus 113 ~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE-DNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC-SSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEcc-CCccccchh--hcCCCccCEEECCCCc
Confidence 3444555566666667777778888888888887777655778888888888 446777776 7788888888888888
Q ss_pred CccCCC
Q 047071 895 INCLPN 900 (902)
Q Consensus 895 I~~LP~ 900 (902)
|..+|.
T Consensus 190 i~~l~~ 195 (291)
T 1h6t_A 190 ISDLRA 195 (291)
T ss_dssp CCBCGG
T ss_pred CCCChh
Confidence 777653
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=0.00019 Score=76.18 Aligned_cols=76 Identities=25% Similarity=0.291 Sum_probs=41.6
Q ss_pred eeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccC
Q 047071 819 LLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCL 898 (902)
Q Consensus 819 l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~L 898 (902)
+...+..+..+|.+.. .+|++|+|++|.+..+|....+++|++|+|+ .+.++.+| . ++.|++|++|+|++|.|..+
T Consensus 90 L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls-~N~i~~~~-~-l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIR-NNKLKSIV-M-LGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECT-TSCCCBCG-G-GGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECC-CCcCCCCh-H-HccCCCCCEEECCCCcCcch
Confidence 3334444444444333 5555555555555555544566666666666 33455555 3 56666666666666655544
No 115
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.55 E-value=0.00017 Score=78.66 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=29.4
Q ss_pred cccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 836 EQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 836 ~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
.+|++|+|++|.+..+|.. ..+++|++|+|++ ..+..+++..+++|++|++|+|++|+|..+|.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 119 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGSTTCTTCCEEECCSSCCCSCCS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhhCcCCCCEEECCCCcCCccCc
Confidence 3445555555544444321 4455555555542 23444422224555555555555555544443
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.55 E-value=0.0001 Score=84.46 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+...+..+..+|.+..+.+|++|++++|.+..+|....+++|++|+|++ +.+..+|. +++|++|++|+|++|.
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN-NQITDIDP--LKNLTNLNRLELSSNT 145 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GTTCTTCSEEEEEEEE
T ss_pred CCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCC-CCCCCChH--HcCCCCCCEEECCCCc
Confidence 44555555666666666777778888888877777776677778888888874 45777765 7788888888888877
Q ss_pred CccCC
Q 047071 895 INCLP 899 (902)
Q Consensus 895 I~~LP 899 (902)
+..+|
T Consensus 146 l~~~~ 150 (466)
T 1o6v_A 146 ISDIS 150 (466)
T ss_dssp ECCCG
T ss_pred cCCCh
Confidence 66655
No 117
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.55 E-value=0.00022 Score=75.81 Aligned_cols=83 Identities=23% Similarity=0.470 Sum_probs=62.2
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCcee-ChhhhcCCCCccEEEe
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVI-PMSFFQFMTSLKVLNL 890 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~L-P~sfIg~L~~Lr~LdL 890 (902)
.+.+...+..+..+| .+..+.+|++|+|++|.+..+|.. ..+++|++|+|++| .+..+ |.. ++++++|++|+|
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l 208 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYL 208 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEEC
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhH-ccCcccccEeeC
Confidence 344455555566665 267788888888888888888764 77888999999844 46666 555 888999999999
Q ss_pred eCCCCccCCC
Q 047071 891 SKTRINCLPN 900 (902)
Q Consensus 891 s~c~I~~LP~ 900 (902)
++|+|..+|.
T Consensus 209 ~~n~l~~~~~ 218 (285)
T 1ozn_A 209 FANNLSALPT 218 (285)
T ss_dssp CSSCCSCCCH
T ss_pred CCCcCCcCCH
Confidence 9988888774
No 118
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.54 E-value=9.5e-05 Score=84.63 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=36.7
Q ss_pred cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
+.++.+|++|+|++|.+..+|.. ..+++|++|+|++ +.+..+++..+++|.+|++|+|++|.|..++
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 144 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccceeC
Confidence 45555566666666555555543 4556666666653 3344443333566666666666666555443
No 119
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.53 E-value=9.5e-05 Score=91.71 Aligned_cols=155 Identities=9% Similarity=0.051 Sum_probs=82.2
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccc---cc--ccEEEEeeccccCcHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTK---LI--FDVIILVTVSRYWSVRKIQNDV 527 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr---~~--Fd~i~WV~vs~~~~~~~ll~~I 527 (902)
..++++||+.++..+++.|......-+.|+|++|+|||+||+.+++..... .. -..+++++++.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 346789999999999999977655667899999999999999998764210 00 11233443322100
Q ss_pred HHhcCcCCCCCCcchhhHHHHHhhhc--CceeEEEEccchhhhh-------hh---hhcCCCCCCCCCcEEEEEcc-cCC
Q 047071 528 LRQLPLYCEDSEADSDVAEKLFHFLN--GKKFLLLLDDVWEQIN-------LQ---EVGIPDPSSENVGKIVVASR-TVG 594 (902)
Q Consensus 528 l~~L~~~~~~~~~~~~l~~~L~~~L~--~kr~LLVLDDV~d~~~-------~~---~L~~~l~~~~~GSkIIVTTR-~~~ 594 (902)
..............+...+. +++.+|+||+++.... ++ .+...+ .. .+..+|.+|. ...
T Consensus 240 ------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHH
T ss_pred ------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHH
Confidence 00000012222222323332 3678999999975420 11 111111 11 2233454443 211
Q ss_pred ----c-ccccCcceeEEecccCHHHHHHHHHHHh
Q 047071 595 ----A-CLEMDASKLIEVETVSKKEAWELFYEQV 623 (902)
Q Consensus 595 ----v-a~~~~~~~~~~L~~Ls~ees~~LF~~~a 623 (902)
. .........+.+++++.++...++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 1111223458999999999999997544
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.52 E-value=0.00016 Score=86.16 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=61.7
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+.+.+..+..+|.+..+.+|+.|+|++|.+..+|....|++|+.|+|+ ++.+..++ . +++|.+|++|+|++|.
T Consensus 88 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~l~-~-l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG-NNKITDIT-V-LSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECC-SSCCCCCG-G-GGSCTTCSEEECCSSC
T ss_pred CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECC-CCccCCch-h-hcccCCCCEEECcCCc
Confidence 3445555666677777777788888888888888777766778888888888 44577773 4 7888888888888888
Q ss_pred CccCCC
Q 047071 895 INCLPN 900 (902)
Q Consensus 895 I~~LP~ 900 (902)
|..+|+
T Consensus 165 l~~~~~ 170 (605)
T 1m9s_A 165 ISDIVP 170 (605)
T ss_dssp CCCCGG
T ss_pred CCCchh
Confidence 877653
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.51 E-value=0.00019 Score=72.21 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=64.5
Q ss_pred CceeeccCCCCCCC-C-CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEP-P-SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~l-p-~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+ | .+..+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...+..+++..++.|++|++|+|+
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY-DNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC-SSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC-CCcCCeeCHHHhhcCCCCCEEEeC
Confidence 34455555566665 3 578899999999999999998874 789999999999 556877754449999999999999
Q ss_pred CCCCc
Q 047071 892 KTRIN 896 (902)
Q Consensus 892 ~c~I~ 896 (902)
++.+.
T Consensus 135 ~N~l~ 139 (192)
T 1w8a_A 135 SNPFN 139 (192)
T ss_dssp TCCBC
T ss_pred CCCcc
Confidence 99765
No 122
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.50 E-value=0.00013 Score=79.40 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=59.8
Q ss_pred cCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCcc
Q 047071 822 AGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 822 ~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
.+..+..++ .+..+.+|++|+|++|.+..++.. ..+++|++|+|+ +..+..+|.. ++++++|++|+|++|.|..
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRVPAG-LPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC-SSCCCBCCTT-GGGCTTCCEEECCSSCCCB
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC-CCcCeecChh-hhcCccCCEEECCCCCCCc
Confidence 333444443 567778888888888888887763 778888888888 4568888888 8888888888888888888
Q ss_pred CCCC
Q 047071 898 LPNT 901 (902)
Q Consensus 898 LP~s 901 (902)
+|..
T Consensus 279 ~~~~ 282 (332)
T 2ft3_A 279 VGVN 282 (332)
T ss_dssp CCTT
T ss_pred cChh
Confidence 8753
No 123
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.49 E-value=0.00013 Score=87.14 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=71.3
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+.+.+..+..++.+..+.+|+.|+|++|.+..++....|++|+.|+|+ ++.+..+|+ +++|.+|++|+|++|.
T Consensus 110 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE-DNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECC-SSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECc-CCcCCCchh--hccCCCCCEEECcCCC
Confidence 4556666777788888899999999999999999998766999999999999 456888877 8999999999999999
Q ss_pred CccCCC
Q 047071 895 INCLPN 900 (902)
Q Consensus 895 I~~LP~ 900 (902)
|..+|.
T Consensus 187 i~~l~~ 192 (605)
T 1m9s_A 187 ISDLRA 192 (605)
T ss_dssp CCBCGG
T ss_pred CCCChH
Confidence 988763
No 124
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.47 E-value=0.00015 Score=86.80 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=57.0
Q ss_pred eeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 818 FLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 818 ~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
.+...+..+..++ .+.++.+|++|+|++|.+..+|.. ..|++|++|+|++ +.+..+|+..|++|++|++|||++|
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC-CccCccChhHccccCCCCEEECCCC
Confidence 3334444444443 356777888888888888887763 7788888888884 4567777544788888888888888
Q ss_pred CCccCCC
Q 047071 894 RINCLPN 900 (902)
Q Consensus 894 ~I~~LP~ 900 (902)
.+..+|.
T Consensus 132 ~l~~~~~ 138 (680)
T 1ziw_A 132 GLSSTKL 138 (680)
T ss_dssp CCSCCCC
T ss_pred cccccCc
Confidence 7776654
No 125
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.45 E-value=0.0002 Score=78.74 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=57.0
Q ss_pred ceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCC--C-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 817 RFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPE--K-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~--~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
+.+...+..+..+|. +..+.+|++|+|++|.+..+|. . ..+++|++|+|++|..+..+|...++++++|++|+|+
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 334444445556663 5677788888888888777776 2 6788888888886666777755447777888888887
Q ss_pred CCCCccC
Q 047071 892 KTRINCL 898 (902)
Q Consensus 892 ~c~I~~L 898 (902)
+|++..+
T Consensus 183 ~n~l~~~ 189 (353)
T 2z80_A 183 ASDLQSY 189 (353)
T ss_dssp ETTCCEE
T ss_pred CCCcCcc
Confidence 7777655
No 126
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.45 E-value=0.00017 Score=78.48 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=63.7
Q ss_pred eeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 818 FLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 818 ~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
.+...+..+..++ .+..+.+|++|+|++|.+..++.. ..+++|++|+|++ ..+..+|.. ++++++|++|+|++|
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~-l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKVPGG-LADHKYIQVVYLHNN 273 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTT-TTTCSSCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCccCChh-hccCCCcCEEECCCC
Confidence 3444444444442 567788899999999988887753 7888999999994 468899998 889999999999999
Q ss_pred CCccCCCC
Q 047071 894 RINCLPNT 901 (902)
Q Consensus 894 ~I~~LP~s 901 (902)
+|+.+|..
T Consensus 274 ~i~~~~~~ 281 (330)
T 1xku_A 274 NISAIGSN 281 (330)
T ss_dssp CCCCCCTT
T ss_pred cCCccChh
Confidence 99888763
No 127
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.44 E-value=0.00013 Score=84.30 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCceeeccCCCCCCCC--CcccccccEEEeccCCCcccC-CCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEe
Q 047071 815 GHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTL-PEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~L-P~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdL 890 (902)
..+.+...+..+..++ .+..+.+|++|+|++|.+..+ |.. ..+++|++|+|+ ++.++.+|.. .|.+|++|||
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC-SSCCCEEECC---CCCCCSEEEC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC-CCceeecCcc---ccCCccEEec
Confidence 4455555666677665 578889999999999998887 444 889999999999 5578899975 8999999999
Q ss_pred eCCCCccC
Q 047071 891 SKTRINCL 898 (902)
Q Consensus 891 s~c~I~~L 898 (902)
++|.|..+
T Consensus 98 ~~N~l~~~ 105 (520)
T 2z7x_B 98 SFNAFDAL 105 (520)
T ss_dssp CSSCCSSC
T ss_pred cCCccccc
Confidence 99988864
No 128
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.44 E-value=0.00018 Score=83.68 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=42.0
Q ss_pred CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccC
Q 047071 831 SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCL 898 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~L 898 (902)
.+..+++|++|+|++|.+..+|.. ..+++|++|+|+ .+.+..+|+..|++|++|++|||++|.|..+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 356666677777777666665532 666677777776 3345556554466666777777766666543
No 129
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.44 E-value=0.00011 Score=79.92 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=32.6
Q ss_pred ccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 835 WEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
+..|++|+|++|.+..+|....+++|++|+|+ ...+..+|+. ++.+++|++|+|++|+|..+|.
T Consensus 168 l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp TTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEECTTSCCCEECT
T ss_pred cCcCCEEECCCCcCcccccccccccCCEEECC-CCcCCcchhh-hcccCcccEEECcCCcccchhh
Confidence 44555555555555555444445555555555 3345555555 5555555555555555555544
No 130
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.44 E-value=0.00022 Score=75.54 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=46.8
Q ss_pred CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCce--eChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 831 SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKV--IPMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~--LP~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
.+..+.+|++|++.+|.+..++.. ..+++|++|+|++ ..+.. +|.. +++|++|++|+|++|+|..+|.
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCcCCH
Confidence 356677777777777777776653 6777777777773 44554 5666 7777777777777777766653
No 131
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.44 E-value=0.00016 Score=86.59 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=67.2
Q ss_pred ceeeccCCCCCCCC-Ccc--cccccEEEeccCCCcccCCCC-CCCCCccEEEeec------CCCCceeChhhhcCCCCcc
Q 047071 817 RFLLRAGAGLTEPP-SLK--EWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQR------NYQLKVIPMSFFQFMTSLK 886 (902)
Q Consensus 817 ~~l~~~~~~l~~lp-~l~--~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~------c~~L~~LP~sfIg~L~~Lr 886 (902)
+.+...+..+..+| .+. .+.+|+.|+|++|.+..+|.. ..+++|++|+|++ +.-...+|.. +++|++|+
T Consensus 491 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~ 569 (636)
T 4eco_A 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLT 569 (636)
T ss_dssp CEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCC
T ss_pred cEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCC
Confidence 33444555566677 344 788999999999999889887 8899999999954 3346688888 89999999
Q ss_pred EEEeeCCCCccCCCCC
Q 047071 887 VLNLSKTRINCLPNTF 902 (902)
Q Consensus 887 ~LdLs~c~I~~LP~sI 902 (902)
+|||++|+|..+|..+
T Consensus 570 ~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 570 QLQIGSNDIRKVNEKI 585 (636)
T ss_dssp EEECCSSCCCBCCSCC
T ss_pred EEECCCCcCCccCHhH
Confidence 9999999999999753
No 132
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.00019 Score=89.16 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=69.0
Q ss_pred CceeeccCCCCCCCCC-cc--cccccEEEeccCCCcccCCCC-CCCCCccEEEeec------CCCCceeChhhhcCCCCc
Q 047071 816 HRFLLRAGAGLTEPPS-LK--EWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQR------NYQLKVIPMSFFQFMTSL 885 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~-l~--~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~------c~~L~~LP~sfIg~L~~L 885 (902)
...+...+..+..+|. +. .+++|+.|+|++|.+..+|.. ..|++|+.|+|++ |.-...+|.. |++|++|
T Consensus 730 L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L 808 (876)
T 4ecn_A 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSL 808 (876)
T ss_dssp CCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSC
T ss_pred ccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCC
Confidence 3445555556667773 44 788999999999999889877 8899999999976 3345678888 9999999
Q ss_pred cEEEeeCCCCccCCCCC
Q 047071 886 KVLNLSKTRINCLPNTF 902 (902)
Q Consensus 886 r~LdLs~c~I~~LP~sI 902 (902)
++|+|++|+|..+|..+
T Consensus 809 ~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 809 IQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp CEEECCSSCCCBCCSCC
T ss_pred CEEECCCCCCCccCHhh
Confidence 99999999999999864
No 133
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.00017 Score=89.43 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=33.5
Q ss_pred cccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCC-ccEEEeeCCCCccCCC
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTS-LKVLNLSKTRINCLPN 900 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~-Lr~LdLs~c~I~~LP~ 900 (902)
+.++.+|+.|+|++|.+..+|..+.+++|++|+|+ .+.+..+|.. ++++.+ |++|+|++|+|..+|.
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls-~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD-YNQIEEIPED-FCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECC-SSCCSCCCTT-SCEECTTCCEEECCSSCCCSCCS
T ss_pred hhcCCCCCEEECCCCCcccchhhcCCCcceEEECc-CCccccchHH-HhhccccCCEEECcCCCCCcCch
Confidence 44455555555555555555533555555555555 2234455554 555555 5555555555555543
No 134
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.41 E-value=0.00032 Score=82.59 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=67.3
Q ss_pred CceeeccCCCCCCC-C-CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCc--eeChhhhcCCCCccEEE
Q 047071 816 HRFLLRAGAGLTEP-P-SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLK--VIPMSFFQFMTSLKVLN 889 (902)
Q Consensus 816 ~~~l~~~~~~l~~l-p-~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~--~LP~sfIg~L~~Lr~Ld 889 (902)
.+.+...+..+..+ | .+..+.+|++|+|++|.+..+|.. +++.+|++|+|++| .+. .+|.. +++|++|++|+
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~ 159 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVD 159 (606)
T ss_dssp CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEE
T ss_pred cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEE
Confidence 34444555556665 4 588999999999999999988844 89999999999955 465 57888 99999999999
Q ss_pred eeCCCCccCCC
Q 047071 890 LSKTRINCLPN 900 (902)
Q Consensus 890 Ls~c~I~~LP~ 900 (902)
|++|+|..+|.
T Consensus 160 Ls~n~l~~~~~ 170 (606)
T 3vq2_A 160 LSYNYIQTITV 170 (606)
T ss_dssp CCSSCCCEECT
T ss_pred ccCCcceecCh
Confidence 99999988765
No 135
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.40 E-value=0.00015 Score=79.19 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=58.1
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+.+...+..+..++.+..+.+|++|++++|.+..+|....+++|++|+|++| .+..++...++++++|++|+|++|.|.
T Consensus 246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccc
Confidence 3344444455556667777788888888888777766677888888888855 455444333788888888888888777
Q ss_pred cCCC
Q 047071 897 CLPN 900 (902)
Q Consensus 897 ~LP~ 900 (902)
.+|+
T Consensus 325 ~~~~ 328 (347)
T 4fmz_A 325 DIRP 328 (347)
T ss_dssp CCGG
T ss_pred cccC
Confidence 7654
No 136
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.40 E-value=0.00021 Score=83.84 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCCceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCC-C-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEE
Q 047071 814 EGHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPE-K-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLN 889 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~-~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~Ld 889 (902)
...+.+...+..+..++ .+..+.+|++|+|++|.+..++. . ..+++|++|+|+ .+.++.+|.. .|.+|++||
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~---~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS-HNRLQNISCC---PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT-TSCCCEECSC---CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC-CCcCCccCcc---ccccCCEEE
Confidence 34556666666777776 58889999999999999988754 3 889999999999 5568899985 899999999
Q ss_pred eeCCCCccCC
Q 047071 890 LSKTRINCLP 899 (902)
Q Consensus 890 Ls~c~I~~LP 899 (902)
|++|+|..+|
T Consensus 128 Ls~N~l~~l~ 137 (562)
T 3a79_B 128 LSFNDFDVLP 137 (562)
T ss_dssp CCSSCCSBCC
T ss_pred CCCCCccccC
Confidence 9999998876
No 137
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.40 E-value=0.00068 Score=82.90 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=83.9
Q ss_pred CCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccc---cccccEEEEeeccccCcHHHHHHHHHH
Q 047071 453 GLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKT---KLIFDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~v---r~~Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
..+++|||+.+++.+...|......-+.++|++|+|||++|+.+++...- .......-++.++-
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 34578999999999999997655556789999999999999999876411 00000111111111
Q ss_pred hcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCc------cc-ccCcc
Q 047071 530 QLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGA------CL-EMDAS 602 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~v------a~-~~~~~ 602 (902)
+... .......+...+......++.+|++| ...+....+...+. ....++|.+|..... .. .....
T Consensus 245 --g~~~-~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf 317 (758)
T 3pxi_A 245 --GTKY-RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF 317 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred --cccc-cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence 0000 00011122222333334678899999 22222223333332 223556666654441 10 01123
Q ss_pred eeEEecccCHHHHHHHHHHHhcC
Q 047071 603 KLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 603 ~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
..+.++.++.++...++......
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999876543
No 138
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.39 E-value=8.6e-05 Score=73.85 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhhcC---CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCC
Q 047071 460 TERTVLKILQCISG---VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCE 536 (902)
Q Consensus 460 Re~ele~L~~~L~~---~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~ 536 (902)
....++.+.+++.+ .....+.|+|++|+||||||+.+++.......+ .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~- 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGK- 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCch-
Confidence 44555555555543 234689999999999999999998766322222 22333 23344444433322111
Q ss_pred CCCcchhhHHHHHhhhcCceeEEEEccchh--hhhhh--hhcCCCCC-CCCCcEEEEEcccC
Q 047071 537 DSEADSDVAEKLFHFLNGKKFLLLLDDVWE--QINLQ--EVGIPDPS-SENVGKIVVASRTV 593 (902)
Q Consensus 537 ~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d--~~~~~--~L~~~l~~-~~~GSkIIVTTR~~ 593 (902)
...... .+. +.-+||||+++. .+.|. .+...+.. ...|..+|+||...
T Consensus 91 ----~~~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 ----DTKFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----CSHHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----HHHHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111222 222 456899999972 23222 11111111 12466788888753
No 139
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.38 E-value=0.00028 Score=80.75 Aligned_cols=85 Identities=24% Similarity=0.261 Sum_probs=66.3
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
...+...+..+..+| .+..+.+|+.|+|++|.+..++.. ..+++|++|+|+ ...+..+++..+++|++|++|||+
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV-GGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECC-SSCCSEECTTTBTTCTTCCEEECC
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECC-CCccceECHHHhcCcccCCEEECC
Confidence 344555556677777 467888999999999988887764 788999999999 455777754448899999999999
Q ss_pred CCCCccCCCC
Q 047071 892 KTRINCLPNT 901 (902)
Q Consensus 892 ~c~I~~LP~s 901 (902)
+|+|..+|..
T Consensus 305 ~N~l~~~~~~ 314 (477)
T 2id5_A 305 GNQLTTLEES 314 (477)
T ss_dssp SSCCSCCCGG
T ss_pred CCcCceeCHh
Confidence 9999888864
No 140
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.38 E-value=0.00031 Score=80.71 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+...+..+..+| +..+.+|++|+|++|.+..+| .+.+++|++|+|++ ..+..+| +++|++|++|+|++|+
T Consensus 65 ~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~-N~l~~l~---~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDT-NKLTKLD---VSQNPLLTYLNCARNT 138 (457)
T ss_dssp TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCS-SCCSCCC---CTTCTTCCEEECTTSC
T ss_pred CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCC-CcCCeec---CCCCCcCCEEECCCCc
Confidence 3444445555555555 666777777777777777665 56777777777773 4566665 6677777777777777
Q ss_pred CccCC
Q 047071 895 INCLP 899 (902)
Q Consensus 895 I~~LP 899 (902)
|+.+|
T Consensus 139 l~~l~ 143 (457)
T 3bz5_A 139 LTEID 143 (457)
T ss_dssp CSCCC
T ss_pred cceec
Confidence 76654
No 141
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.36 E-value=0.00013 Score=84.41 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=44.0
Q ss_pred cccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 834 EWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 834 ~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
.+..|++|+|++|.+..+|....+++|++|+|+ ++.+..+|++ ++.+++|++|||++|.|..+|..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT
T ss_pred hCCcccEEecCCCccccccccccCCCCCEEECC-CCCCCCCCHh-HcCCCCccEEEecCCcCcccchh
Confidence 456667777777666666666566677777776 4456667666 66677777777777766666654
No 142
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.36 E-value=0.0003 Score=79.61 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=34.8
Q ss_pred cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCcee-ChhhhcCCCCccEEEeeCCCCccCCC
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVI-PMSFFQFMTSLKVLNLSKTRINCLPN 900 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~L-P~sfIg~L~~Lr~LdLs~c~I~~LP~ 900 (902)
+..+.+|++|+|++|.+..++.. ..+++|++|+|++ ..+..+ |.. +++|++|++|+|++|+|+.+|.
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY-NHIRALGDQS-FLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSCCSCCCT
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC-CcccccChhh-ccccccccEEECCCCccccCCH
Confidence 44455555555555555554322 4555555555553 234444 333 5555555555555555555554
No 143
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.35 E-value=0.00033 Score=82.13 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=63.4
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeC--hhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIP--MSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP--~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..++ .+..+.+|++|+|++|.+..+|.. .+++|++|+|++ +.+..+| .. +++|++|++|+|+
T Consensus 78 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~-N~l~~l~~p~~-~~~l~~L~~L~L~ 154 (562)
T 3a79_B 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF-NDFDVLPVCKE-FGNLTKLTFLGLS 154 (562)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS-SCCSBCCCCGG-GGGCTTCCEEEEE
T ss_pred ccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC-CCccccCchHh-hcccCcccEEecC
Confidence 445555566666653 478889999999999999999988 899999999994 5577765 56 9999999999999
Q ss_pred CCCCcc
Q 047071 892 KTRINC 897 (902)
Q Consensus 892 ~c~I~~ 897 (902)
+++|..
T Consensus 155 ~n~l~~ 160 (562)
T 3a79_B 155 AAKFRQ 160 (562)
T ss_dssp CSBCCT
T ss_pred CCcccc
Confidence 997764
No 144
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.34 E-value=0.00025 Score=87.66 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=62.4
Q ss_pred CCCceeeccCCCCCCCC--CcccccccEEEeccCC-CcccC-CCC-CCCCCccEEEeecCCCCcee-ChhhhcCCCCccE
Q 047071 814 EGHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDN-ELCTL-PEK-PSCSELSVLFLQRNYQLKVI-PMSFFQFMTSLKV 887 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~-~i~~L-P~~-~~L~~Lr~L~Ls~c~~L~~L-P~sfIg~L~~Lr~ 887 (902)
...+.+...+..+..++ .+.++.+|++|+|++| .+..+ |.. .+|++|++|+|++ +.+..+ |.. |++|.+|++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~-~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDA-FQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTS-SCSCSSCCC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhH-ccCCcccCE
Confidence 33444444445555543 6788999999999998 45566 444 8999999999994 457777 555 999999999
Q ss_pred EEeeCCCCcc-CCC
Q 047071 888 LNLSKTRINC-LPN 900 (902)
Q Consensus 888 LdLs~c~I~~-LP~ 900 (902)
|+|++|++.. +|.
T Consensus 102 L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 102 LRLYFCGLSDAVLK 115 (844)
T ss_dssp EECTTCCCSSCCST
T ss_pred eeCcCCCCCccccc
Confidence 9999998875 443
No 145
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.33 E-value=0.0003 Score=79.65 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCceeeccCCCCCCC-C-CcccccccEEEeccCCCcc-cCCC-C-CCCCCccEEEeecCCCCcee-ChhhhcCCCCccE
Q 047071 814 EGHRFLLRAGAGLTEP-P-SLKEWEQAKFIFLMDNELC-TLPE-K-PSCSELSVLFLQRNYQLKVI-PMSFFQFMTSLKV 887 (902)
Q Consensus 814 ~~~~~l~~~~~~l~~l-p-~l~~l~~Lr~L~L~~~~i~-~LP~-~-~~L~~Lr~L~Ls~c~~L~~L-P~sfIg~L~~Lr~ 887 (902)
...+.+...+..+..+ | .+..+.+|++|+|++|.+. .+|. . ..+++|++|+|++| .+..+ |.. +++|.+|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGA-FNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTT-TTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhh-ccCcccCCE
Confidence 3445555555556655 3 5788999999999999875 5654 3 88999999999954 46666 556 999999999
Q ss_pred EEeeCCCCcc
Q 047071 888 LNLSKTRINC 897 (902)
Q Consensus 888 LdLs~c~I~~ 897 (902)
|+|++|+|..
T Consensus 108 L~L~~n~l~~ 117 (455)
T 3v47_A 108 LTLTQCNLDG 117 (455)
T ss_dssp EECTTSCCBT
T ss_pred EeCCCCCCCc
Confidence 9999998874
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.33 E-value=0.00026 Score=78.03 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCCCceeeccCCCCCCCC--CcccccccEEEeccCCCcc-cCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccE
Q 047071 813 PEGHRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELC-TLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKV 887 (902)
Q Consensus 813 ~~~~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~-~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~ 887 (902)
+.....+.+.+..++.+| .+..+.+|++|+|++|.+. .+|.. ..|.+|+.+.+.++.++..+|+..+++|++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 334556666777788887 4788999999999999874 47754 788888876665588999998776899999999
Q ss_pred EEeeCCCCccCCCC
Q 047071 888 LNLSKTRINCLPNT 901 (902)
Q Consensus 888 LdLs~c~I~~LP~s 901 (902)
|+|++|+|..+|+.
T Consensus 109 L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 109 LLISNTGIKHLPDV 122 (350)
T ss_dssp EEEEEECCSSCCCC
T ss_pred ccccccccccCCch
Confidence 99999999998863
No 147
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.33 E-value=0.00023 Score=81.45 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=36.0
Q ss_pred CCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 826 LTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 826 l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
+..+|.+..+++|++|+|++|.+..+|....+++|++|+|+ .+.+..+|+ +++|++|++|+|++|+|..+|
T Consensus 58 i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 58 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECC-CCccccChh--hcCCCCCCEEECCCCCCCCCh
Confidence 34444445555555555555555554444555555555555 233444443 455555555555555554444
No 148
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.32 E-value=0.00025 Score=83.54 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=30.6
Q ss_pred cccccccEEEeccCCCcccCCC-C-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccC
Q 047071 832 LKEWEQAKFIFLMDNELCTLPE-K-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCL 898 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~-~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~L 898 (902)
+..+.+|++|+|++|.+..++. . ..+++|++|+|+ .+.+..+++..+++|++|++|+|++|.|..+
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI-QTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT-TSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred ccCccccCeeeCCCCcccccChhhhcccccccEeecc-ccCcccCCcchhccCCcccEEECCCCccccc
Confidence 4444445555555544444322 2 445555555555 2234444222255555555555555555544
No 149
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.32 E-value=0.0003 Score=81.91 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=64.3
Q ss_pred ceeeccCCCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCce--eChhhhcCCCCccEEEe
Q 047071 817 RFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKV--IPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 817 ~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~--LP~sfIg~L~~Lr~LdL 890 (902)
+.+...+..+..+| .+..+.+|++|++++|.+..+|.. +.|++|++|+|++| .+.. +|.. |++|++|++|+|
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l 156 (570)
T 2z63_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDL 156 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEEC
T ss_pred CEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeC
Confidence 33444444455554 578889999999999999998874 89999999999954 4554 7888 999999999999
Q ss_pred eCCCCccCCC
Q 047071 891 SKTRINCLPN 900 (902)
Q Consensus 891 s~c~I~~LP~ 900 (902)
++|++..+|.
T Consensus 157 ~~n~l~~~~~ 166 (570)
T 2z63_A 157 SSNKIQSIYC 166 (570)
T ss_dssp TTSCCCEECG
T ss_pred cCCccceecH
Confidence 9998887764
No 150
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.31 E-value=0.00029 Score=74.41 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=34.8
Q ss_pred CCccccchHHHHHHHHHhhc---C---------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 453 GLFVSRSTERTVLKILQCIS---G---------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~---~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....++|.+..++.|.+.+. . ...+-+.|+|++|+|||+||+.+++..
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44567888777666666543 1 123447799999999999999998865
No 151
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.0049 Score=64.59 Aligned_cols=154 Identities=11% Similarity=0.097 Sum_probs=81.5
Q ss_pred cCCccccchHHHHHHHHHhhc---C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCIS---G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~---~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++++.+.+. . ...+-+.|+|++|+||||||+.+++.. ...| +.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHH
Confidence 344567888887777765432 1 123458899999999999999998765 2222 3333221100
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhhh----------------hhhhcCCCC--CCC
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQIN----------------LQEVGIPDP--SSE 581 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~~----------------~~~L~~~l~--~~~ 581 (902)
.. ...........+.......+.++++|+++.... ...+...+. ...
T Consensus 84 ----------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ----------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ----------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ----------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00 000112222222333344568999999954310 111111110 112
Q ss_pred CCcEEEEEcccCC-ccccc----CcceeEEecccCHHHHHHHHHHHhcC
Q 047071 582 NVGKIVVASRTVG-ACLEM----DASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 582 ~GSkIIVTTR~~~-va~~~----~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
.+..||.||.... +.... .-...+.+...+.++-.+++...+..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 3445666665543 21111 12356788888888888888776643
No 152
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.28 E-value=0.0019 Score=78.96 Aligned_cols=154 Identities=13% Similarity=0.092 Sum_probs=87.9
Q ss_pred CccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccccc---c-cccEEEE-eeccccCcHHHHHHHHH
Q 047071 454 LFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTK---L-IFDVIIL-VTVSRYWSVRKIQNDVL 528 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr---~-~Fd~i~W-V~vs~~~~~~~ll~~Il 528 (902)
.++++||+.+++.+++.|......-+.|+|++|+|||++|+.+++..... . ...+.+| ++.+.-
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 45689999999999999987666677899999999999999998754211 0 1122222 211110
Q ss_pred HhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhh----------hh-hhhhcCCCCCCCCCcEEEEEcccCCc-
Q 047071 529 RQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQ----------IN-LQEVGIPDPSSENVGKIVVASRTVGA- 595 (902)
Q Consensus 529 ~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~----------~~-~~~L~~~l~~~~~GSkIIVTTR~~~v- 595 (902)
+... ............+.+.+ ..++.+|+||+++.. .+ ...+...+. . .+..+|.+|.....
T Consensus 254 --~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~-~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 --LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GKIRVIGSTTYQEFS 328 (758)
T ss_dssp ---CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-S-CCCEEEEEECHHHHH
T ss_pred --hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-C-CCeEEEEEeCchHHh
Confidence 0000 01112233333333333 345789999999754 11 222333332 2 23455555543211
Q ss_pred ---c---cccCcceeEEecccCHHHHHHHHHHHh
Q 047071 596 ---C---LEMDASKLIEVETVSKKEAWELFYEQV 623 (902)
Q Consensus 596 ---a---~~~~~~~~~~L~~Ls~ees~~LF~~~a 623 (902)
. ........+.+++++.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0 011123468999999999998887654
No 153
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.27 E-value=0.00011 Score=79.87 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=37.2
Q ss_pred cccccccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCc-eeChhhhcCCC-CccEEEeeCCCCc-cCC
Q 047071 832 LKEWEQAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLK-VIPMSFFQFMT-SLKVLNLSKTRIN-CLP 899 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~-~LP~sfIg~L~-~Lr~LdLs~c~I~-~LP 899 (902)
+..+++|++|+|++|.+. .+|.. ..+++|++|+|++| .+. .+|.. ++++. +|++|+|++|++. .+|
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEEECC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeeccCC
Confidence 555556666666666555 34444 55666666666633 343 55655 55665 6666666666554 344
No 154
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.27 E-value=0.00013 Score=78.44 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=44.3
Q ss_pred CceeeccCCCCCCCCC--cccccccEEEeccCCCcccC---CCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEE
Q 047071 816 HRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTL---PEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLN 889 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~L---P~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~Ld 889 (902)
.+.+...+..+..+|. +..+.+|++|+|++|.+..+ |.. ..+++|++|+|+ ...+..+|.. +.++++|++|+
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~l~~~-~~~l~~L~~L~ 107 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSN-FLGLEQLEHLD 107 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-SCSEEEEEEE-EETCTTCCEEE
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC-CCccccChhh-cCCCCCCCEEE
Confidence 3344444445555553 45666666666666665543 222 445666666666 3345555555 55555555555
Q ss_pred eeCCCCccCC
Q 047071 890 LSKTRINCLP 899 (902)
Q Consensus 890 Ls~c~I~~LP 899 (902)
|++|+|..+|
T Consensus 108 l~~n~l~~~~ 117 (306)
T 2z66_A 108 FQHSNLKQMS 117 (306)
T ss_dssp CTTSEEESST
T ss_pred CCCCcccccc
Confidence 5555555444
No 155
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.27 E-value=0.00013 Score=79.28 Aligned_cols=71 Identities=18% Similarity=0.429 Sum_probs=51.4
Q ss_pred CC-CcccccccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCc-eeChhhhcCCCCccEEEeeCCCCc-cCCCC
Q 047071 829 PP-SLKEWEQAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLK-VIPMSFFQFMTSLKVLNLSKTRIN-CLPNT 901 (902)
Q Consensus 829 lp-~l~~l~~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~-~LP~sfIg~L~~Lr~LdLs~c~I~-~LP~s 901 (902)
+| .+..+++|++|+|++|.+. .+|.. ..+++|++|+|++| .+. .+|.. +++|++|++|+|++|.|. .+|..
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEEECCGG
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccCcCCHH
Confidence 44 4677778888888877776 56665 77788888888744 344 67777 788888888888888777 66654
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.26 E-value=0.00044 Score=75.69 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=66.1
Q ss_pred CceeeccC-CCCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEe
Q 047071 816 HRFLLRAG-AGLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 816 ~~~l~~~~-~~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdL 890 (902)
...+.+.+ ..+..+| .+..+.+|+.|+|++|.+..+|.. ..|++|++|+|+ .+.|..+|...+..|. |++|+|
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS-FNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-SSCCSCCCSTTTCSCC-CCEEEC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC-CCccceeCHHHcccCC-ceEEEe
Confidence 45555554 6677776 488999999999999999998875 899999999999 6779999998555565 999999
Q ss_pred eCCCCcc
Q 047071 891 SKTRINC 897 (902)
Q Consensus 891 s~c~I~~ 897 (902)
+++.+.-
T Consensus 111 ~~N~~~c 117 (347)
T 2ifg_A 111 SGNPLHC 117 (347)
T ss_dssp CSSCCCC
T ss_pred eCCCccC
Confidence 9997764
No 157
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.26 E-value=0.00036 Score=83.47 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=65.5
Q ss_pred CceeeccCCCCCCCCC--cccccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+|. +..+.+|++|+|++|.+..+|.. .+|++|++|+|++| .+..+|...+++|++|++|+|+
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECC
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEcc
Confidence 4555566666777773 78899999999999998888753 88999999999955 4555544448899999999999
Q ss_pred CCCCccCCC
Q 047071 892 KTRINCLPN 900 (902)
Q Consensus 892 ~c~I~~LP~ 900 (902)
+|+|..+|.
T Consensus 154 ~n~l~~~~~ 162 (680)
T 1ziw_A 154 NNKIQALKS 162 (680)
T ss_dssp SSCCCCBCH
T ss_pred CCcccccCH
Confidence 998887764
No 158
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00028 Score=81.53 Aligned_cols=79 Identities=24% Similarity=0.244 Sum_probs=64.0
Q ss_pred CceeeccCCCCCCC-C-CcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCce--eChhhhcCCCCccEEEee
Q 047071 816 HRFLLRAGAGLTEP-P-SLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKV--IPMSFFQFMTSLKVLNLS 891 (902)
Q Consensus 816 ~~~l~~~~~~l~~l-p-~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~--LP~sfIg~L~~Lr~LdLs 891 (902)
.+.+...+..+..+ | .+..+.+|++|+|++|.+..+|.. .+++|++|+|++| .+.. +|.. +++|++|++|+|+
T Consensus 47 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 47 LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLS 123 (520)
T ss_dssp CCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEE
T ss_pred ccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCC-ccccccchhh-hccCCcceEEEec
Confidence 44555555566665 3 578899999999999999999988 8999999999954 4654 6788 9999999999999
Q ss_pred CCCCcc
Q 047071 892 KTRINC 897 (902)
Q Consensus 892 ~c~I~~ 897 (902)
+|.|..
T Consensus 124 ~n~l~~ 129 (520)
T 2z7x_B 124 TTHLEK 129 (520)
T ss_dssp ESSCCG
T ss_pred Ccccch
Confidence 998764
No 159
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.21 E-value=0.00017 Score=86.35 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=43.7
Q ss_pred eeccCCCCC-CCCCcccccccEEEeccCCCcccCCCC-CCCCC-ccEEEeecCCCCceeChhhhcCCC--CccEEEeeCC
Q 047071 819 LLRAGAGLT-EPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSE-LSVLFLQRNYQLKVIPMSFFQFMT--SLKVLNLSKT 893 (902)
Q Consensus 819 l~~~~~~l~-~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~-Lr~L~Ls~c~~L~~LP~sfIg~L~--~Lr~LdLs~c 893 (902)
+...+..+. .+|.+..+.+|++|+|++|.+..+|.. ..+++ |++|+|+ ...+..+|.. ++.+. +|++|+|++|
T Consensus 335 L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls-~N~l~~lp~~-~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA-HNKLKYIPNI-FDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp EECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC-SSCCSSCCSC-CCTTCSSCEEEEECCSS
T ss_pred EeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc-CCcCcccchh-hhhcccCccCEEECcCC
Confidence 333334444 455555566666666666666666655 55665 6666666 3335566665 55543 6666666666
Q ss_pred CCcc
Q 047071 894 RINC 897 (902)
Q Consensus 894 ~I~~ 897 (902)
.|..
T Consensus 413 ~l~~ 416 (636)
T 4eco_A 413 EIGS 416 (636)
T ss_dssp CTTT
T ss_pred cCCC
Confidence 5543
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.20 E-value=0.0033 Score=72.92 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=95.6
Q ss_pred CccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 454 LFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
...++|.+..+++|.+++.. ...+-|.|+|++|+|||+||+.+++.. ...| +.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~f---v~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSEE---EEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCCE---EEEEchH----
Confidence 34679999999999887742 344678999999999999999998765 2222 2332211
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh----------------hhhhhcCCCCCCCCCc
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI----------------NLQEVGIPDPSSENVG 584 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~~~~~GS 584 (902)
+...+. ..........+.....+++.+|+||+++... .+..+...+. ...+.
T Consensus 274 ------l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-~~~~v 341 (489)
T 3hu3_A 274 ------IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (489)
T ss_dssp ------HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-TTSCE
T ss_pred ------hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-cCCce
Confidence 111110 0011222233333445677899999995321 1111111111 12234
Q ss_pred EEEEEcccCC-cccc----cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 585 KIVVASRTVG-ACLE----MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 585 kIIVTTR~~~-va~~----~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
.||.||.... +... ..-...+.+...+.++-.++|...+...... .......++..+.|.
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~--~~~~l~~la~~t~g~ 406 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA--DDVDLEQVANETHGH 406 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC--TTCCHHHHHHTCTTC
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc--chhhHHHHHHHccCC
Confidence 5555655432 2111 1223468899999999999998887541111 112245666666664
No 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.20 E-value=1.1e-05 Score=81.71 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=55.3
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
+.+...+..+..+|.+..+.+|++|+|++|.+..+|.. ..+++|++|+|++| .+..+| . ++++++|++|+|++|+|
T Consensus 51 ~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~-~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 51 KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-G-IEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp SEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H-HHHHHHSSEEEESEEEC
T ss_pred CEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-c-cccCCCCCEEECCCCcC
Confidence 33444444455566777777788888887777777766 55677888888744 577776 4 77788888888887777
Q ss_pred ccCC
Q 047071 896 NCLP 899 (902)
Q Consensus 896 ~~LP 899 (902)
..+|
T Consensus 128 ~~~~ 131 (198)
T 1ds9_A 128 TNWG 131 (198)
T ss_dssp CCHH
T ss_pred Cchh
Confidence 6554
No 162
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.19 E-value=0.0003 Score=67.73 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 358888888888887742 233456799999999999999998764
No 163
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.19 E-value=6.7e-06 Score=83.17 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=52.9
Q ss_pred ceeeccCCCCCCCCC-cccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeCh-hhhcCCCCccEEEeeCCC
Q 047071 817 RFLLRAGAGLTEPPS-LKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPM-SFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~-l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~-sfIg~L~~Lr~LdLs~c~ 894 (902)
+.+...+..+..+|. +..+++|++|+|++|.+..+|....+++|++|+|++ +.+..+|. ..+++|++|++|+|++|.
T Consensus 73 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 73 RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 344444444555664 344577888888888777777557777888888874 44666665 227788888888888776
Q ss_pred Ccc
Q 047071 895 INC 897 (902)
Q Consensus 895 I~~ 897 (902)
+..
T Consensus 152 l~~ 154 (198)
T 1ds9_A 152 LYN 154 (198)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 164
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.00078 Score=73.45 Aligned_cols=145 Identities=14% Similarity=0.040 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccc-cc-ccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCC
Q 047071 460 TERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPK-TK-LIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCE 536 (902)
Q Consensus 460 Re~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~-vr-~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~ 536 (902)
-+..++.|.+.+.++..+...++|+.|+||||+|..+++... .+ .+.+. .+++.+. ...+.++ +++...+....
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p- 78 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP- 78 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC-
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc-
Confidence 344566777777766678899999999999999999976421 01 12233 4444332 2222222 22333222110
Q ss_pred CCCcchhhHHHHHhhhcCceeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccC-CcccccCcceeEEecccCHH
Q 047071 537 DSEADSDVAEKLFHFLNGKKFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTV-GACLEMDASKLIEVETVSKK 613 (902)
Q Consensus 537 ~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~-~va~~~~~~~~~~L~~Ls~e 613 (902)
..+++-++|+|+++.. ...+.|...+....+.+.+|++|.+. .+...+... .+++.+++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 1245678999999864 23444443333334566777666443 343333334 8999999999
Q ss_pred HHHHHHHHHh
Q 047071 614 EAWELFYEQV 623 (902)
Q Consensus 614 es~~LF~~~a 623 (902)
+....+...+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887765
No 165
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.18 E-value=0.0006 Score=73.13 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=51.0
Q ss_pred CcccccccEEEeccCCCcccCCC-C-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 831 SLKEWEQAKFIFLMDNELCTLPE-K-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~LP~-~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
.+..+++|++|+|++|.+..++. . ..+++|++|+|+ ...+..+|...++++++|++|||++|.|...+
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC-CCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 46677788888888888877643 3 778888888888 44577776644788888888888888777654
No 166
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.002 Score=73.61 Aligned_cols=173 Identities=15% Similarity=0.139 Sum_probs=97.5
Q ss_pred ccCCccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 451 EFGLFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
......+.|.+..+++|.+.+. . ..++-|.++|++|.|||.||+++++.. ...| +.++.+.-
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~--~~~~---~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI--GANF---IFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehhhh
Confidence 3445566889988888877652 1 246789999999999999999999876 3332 22332221
Q ss_pred CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhh----------------hhhhhcCCCC--
Q 047071 518 WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQI----------------NLQEVGIPDP-- 578 (902)
Q Consensus 518 ~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~-- 578 (902)
.+ .. .. ........+.. .-...+++|++|+++... .+..++..+.
T Consensus 252 ~s--------------k~-~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 252 VD--------------KY-IG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp CC--------------SS-SS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred cc--------------cc-ch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 10 00 00 11122222222 224578999999986320 0112221111
Q ss_pred CCCCCcEEEEEcccCCcccc-c---C-cceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 579 SSENVGKIVVASRTVGACLE-M---D-ASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 579 ~~~~GSkIIVTTR~~~va~~-~---~-~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
....+..||.||........ + + -...+.++..+.++-.++|+.+.......... -...|++.+.|.
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~ 386 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGF 386 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCC
Confidence 12234567777765443211 1 1 24567888888888889998777552211111 246777777774
No 167
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.16 E-value=0.00079 Score=80.54 Aligned_cols=73 Identities=27% Similarity=0.326 Sum_probs=38.7
Q ss_pred eeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccC
Q 047071 819 LLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCL 898 (902)
Q Consensus 819 l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~L 898 (902)
+...+..+..+|. .+.+|++|+|++|.+..+|. .+.+|++|+|+ ++.++.+|.. +++|++|+|++|+|..+
T Consensus 86 L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~-~N~l~~lp~~----l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 86 LEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIF-GNQLTSLPVL----PPGLQELSVSDNQLASL 156 (622)
T ss_dssp EEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECC-SSCCSCCCCC----CTTCCEEECCSSCCSCC
T ss_pred EEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECC-CCCCCcCCCC----CCCCCEEECcCCcCCCc
Confidence 3333344444443 34455555555555555544 44455555555 3335555543 36677777777777766
Q ss_pred CC
Q 047071 899 PN 900 (902)
Q Consensus 899 P~ 900 (902)
|.
T Consensus 157 ~~ 158 (622)
T 3g06_A 157 PA 158 (622)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 168
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.16 E-value=0.00085 Score=76.96 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=58.6
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
.+.+...+..+..+|.+..+.+|++|++++|.+..+|.. ..+|++|+|++ ..+..+| + +++|++|++|+|++|++
T Consensus 133 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~-n~l~~l~-~-~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGN-NQLEELP-E-LQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCS-SCCSSCC-C-CTTCTTCCEEECCSSCC
T ss_pred CCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcC-CcCCcCc-c-ccCCCCCCEEECCCCcC
Confidence 344455555666677778888888888888888777754 34788888884 4677777 4 78888888888888877
Q ss_pred ccCCC
Q 047071 896 NCLPN 900 (902)
Q Consensus 896 ~~LP~ 900 (902)
..+|.
T Consensus 208 ~~l~~ 212 (454)
T 1jl5_A 208 KKLPD 212 (454)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 77765
No 169
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.15 E-value=0.0003 Score=76.37 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=64.7
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
+.+...+..+..+|....+.+|++|+|++|.+..+|.. ..+++|++|+|+ ...+..+|.. ++.+++|++|+|++|.+
T Consensus 172 ~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~-~N~l~~l~~~-~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR-NNKLVLIEKA-LRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT-TSCCCEECTT-CCCCTTCCEEECTTCCC
T ss_pred CEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECc-CCcccchhhH-hhcCCCCCEEEccCCCc
Confidence 33444444555556566688999999999999999876 889999999999 4579999999 99999999999999987
Q ss_pred c
Q 047071 896 N 896 (902)
Q Consensus 896 ~ 896 (902)
.
T Consensus 250 ~ 250 (317)
T 3o53_A 250 H 250 (317)
T ss_dssp B
T ss_pred c
Confidence 6
No 170
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0037 Score=70.53 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=98.9
Q ss_pred ccCCccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 451 EFGLFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
......+.|.+..+++|.+.+. . ..++-|.++|++|.|||.||+++++.. ...| +.++.+.-
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l 218 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT--DCKF---IRVSGAEL 218 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH--TCEE---EEEEGGGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh--CCCc---eEEEhHHh
Confidence 3344556889998888877652 1 245678999999999999999998876 3333 22332221
Q ss_pred CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhh----------------hhhhhcCCCC--
Q 047071 518 WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQI----------------NLQEVGIPDP-- 578 (902)
Q Consensus 518 ~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~-- 578 (902)
.+ .. .. ..+.....+.. .-...+++|+||+++... ....++..+.
T Consensus 219 ~s--------------k~-vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 219 VQ--------------KY-IG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp SC--------------SS-TT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hc--------------cc-cc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 10 00 00 11122222222 224568999999986320 0111211111
Q ss_pred CCCCCcEEEEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 579 SSENVGKIVVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 579 ~~~~GSkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
....+-.||.||....... .-.-...+.++..+.++-.++|+.+.......+. --...|++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d--vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG--INLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS--CCHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHCCCCC
Confidence 1223445566665544321 1123567899999999999999887755221111 12577888887753
No 171
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0041 Score=70.93 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=96.6
Q ss_pred cCCccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 452 FGLFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
.....+.|.+..+++|.+.+. . ..++-|.++|++|.|||.||+++++.. ...| +.++.+.-.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l~ 252 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT--NATF---LKLAAPQLV 252 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGGC
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--CCCE---EEEehhhhh
Confidence 344566899999888887642 1 246789999999999999999998876 3333 222222110
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhh----------------hhhhhcCCCCC--
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQI----------------NLQEVGIPDPS-- 579 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~~-- 579 (902)
... .. ........+.. .-...+++|++|+++... ....++..+..
T Consensus 253 --------------~~~-vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 --------------QMY-IG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp --------------SSC-SS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred --------------hcc-cc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 000 00 11222222222 223568999999986320 01112211111
Q ss_pred CCCCcEEEEEcccCCcccc-c----CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 580 SENVGKIVVASRTVGACLE-M----DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 580 ~~~GSkIIVTTR~~~va~~-~----~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
...+-.||.||........ + .-...+.++..+.++-.++|..++......+.. -...|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 2234456667765543221 1 234578888889988889988766441111111 256788888774
No 172
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.07 E-value=0.00098 Score=77.35 Aligned_cols=82 Identities=22% Similarity=0.200 Sum_probs=62.3
Q ss_pred CceeeccCCCCCCCCC--cccccccEEEeccCCCcccC--CCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEe
Q 047071 816 HRFLLRAGAGLTEPPS--LKEWEQAKFIFLMDNELCTL--PEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNL 890 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~--l~~l~~Lr~L~L~~~~i~~L--P~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdL 890 (902)
.+.+...+..+..+|. +..+.+|++|+|++|.+..+ |.. ..+++|++|+|++|..+..+|...+++|++|++|+|
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 3444455555666662 77888999999999888754 444 888999999999777688888644889999999999
Q ss_pred eCCCCcc
Q 047071 891 SKTRINC 897 (902)
Q Consensus 891 s~c~I~~ 897 (902)
++|++..
T Consensus 156 ~~n~l~~ 162 (549)
T 2z81_A 156 KALSLRN 162 (549)
T ss_dssp EETTCCE
T ss_pred cCCcccc
Confidence 9888775
No 173
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.03 E-value=0.001 Score=78.76 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=46.0
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCc-------cEEE
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSL-------KVLN 889 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~L-------r~Ld 889 (902)
..+...+..+..+|. .+.+|++|+|++|.+..+|..+ .+|++|+|+ ++.|+.+|. +.. +| ++|+
T Consensus 143 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls-~N~L~~lp~--~~~--~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 143 EYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVS-TNLLESLPA--VPV--RNHHSEETEIFFR 213 (571)
T ss_dssp CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECC-SSCCSSCCC--CC----------CCEEEE
T ss_pred cEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECc-CCCCCchhh--HHH--hhhcccccceEEe
Confidence 344444555555554 4566777777777766666632 677777777 445667776 222 44 7777
Q ss_pred eeCCCCccCCCC
Q 047071 890 LSKTRINCLPNT 901 (902)
Q Consensus 890 Ls~c~I~~LP~s 901 (902)
|++|+|+.+|.+
T Consensus 214 Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 214 CRENRITHIPEN 225 (571)
T ss_dssp CCSSCCCCCCGG
T ss_pred cCCCcceecCHH
Confidence 777777777764
No 174
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.03 E-value=0.00035 Score=76.94 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=38.1
Q ss_pred ccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCCCC
Q 047071 837 QAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLPNT 901 (902)
Q Consensus 837 ~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP~s 901 (902)
.++.|+|++|.+..+|.. ....+|+.|+|.++..++.||...+++|.+|++|||++|+|+.||..
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 455666666666665554 44555666666555556666655455666666666666666666553
No 175
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.01 E-value=0.0013 Score=75.63 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=55.1
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC-C
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-R 894 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~ 894 (902)
.+.+...+..+..+| +..+.+|++|+|++|.+..+| .+.+++|++|+|+ ...++.+| ++++++|++|+|++| .
T Consensus 87 L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~-~N~l~~l~---l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 87 LTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCA-RNTLTEID---VSHNTQLTELDCHLNKK 160 (457)
T ss_dssp CSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECT-TSCCSCCC---CTTCTTCCEEECTTCSC
T ss_pred CCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECC-CCccceec---cccCCcCCEEECCCCCc
Confidence 344555555566665 677788888888888877775 6778888888888 45577764 678888888888888 5
Q ss_pred CccC
Q 047071 895 INCL 898 (902)
Q Consensus 895 I~~L 898 (902)
+..+
T Consensus 161 ~~~~ 164 (457)
T 3bz5_A 161 ITKL 164 (457)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5444
No 176
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.99 E-value=0.0014 Score=75.23 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=46.4
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+.+...+..+..+|.+..+.+|++|++.+|.+..+|... .+|++|+|++| .+..+| . +++|++|++|+|++|++.
T Consensus 176 ~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n-~l~~lp-~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNN-ILEELP-E-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCS
T ss_pred cEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc--CcccEEECcCC-cCCccc-c-cCCCCCCCEEECCCCcCC
Confidence 334444445555566666666666666666666655432 36666666633 455666 3 566666666666666666
Q ss_pred cCCC
Q 047071 897 CLPN 900 (902)
Q Consensus 897 ~LP~ 900 (902)
.+|.
T Consensus 251 ~l~~ 254 (454)
T 1jl5_A 251 TLPD 254 (454)
T ss_dssp SCCS
T ss_pred cccc
Confidence 6554
No 177
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0079 Score=68.50 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=91.1
Q ss_pred cCCccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 452 FGLFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
.....+.|.+..+++|.+.+. . ..++-|.++|++|.|||+||+++++.. ...| +.++.+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~--~~~~---~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST--KAAF---IRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH--TCEE---EEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCe---EEEecchhh
Confidence 344566899998888877652 1 345679999999999999999999876 3333 223322211
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhh----------------hhhhhcCCCC--C
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQI----------------NLQEVGIPDP--S 579 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~--~ 579 (902)
+ .. .. ........+.. .-...+++|++|+++... ....++..+. .
T Consensus 244 ~--------------~~-~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 244 H--------------KY-LG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp C--------------SS-CS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred c--------------cc-cc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 0 00 00 11112222222 224568999999986321 0111211111 1
Q ss_pred CCCCcEEEEEcccCCccc-----ccCcceeEEeccc-CHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 580 SENVGKIVVASRTVGACL-----EMDASKLIEVETV-SKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 580 ~~~GSkIIVTTR~~~va~-----~~~~~~~~~L~~L-s~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
...+-.||.||....... ...-...+.+..+ +.++-..+|..+.......++ .-...|++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~--~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE--ADLDSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT--CCHHHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc--cCHHHHHHHCCCC
Confidence 223445666665544321 1112345677555 555556677666544111111 1246777877775
No 178
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0049 Score=70.55 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=97.4
Q ss_pred ccCCccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc
Q 047071 451 EFGLFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY 517 (902)
Q Consensus 451 ~~~~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~ 517 (902)
......+.|.+..+++|.+.+. . ..++-|.++|++|.|||.||+.+++.. ...| +.++.+.-
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~--~~~f---i~vs~s~L 279 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT--DATF---IRVIGSEL 279 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGG
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CCCe---EEEEhHHh
Confidence 3444567889988888877542 1 356789999999999999999999876 3333 22322211
Q ss_pred CcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHh-hhcCceeEEEEccchhhh----------------hhhhhcCCCC--
Q 047071 518 WSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFH-FLNGKKFLLLLDDVWEQI----------------NLQEVGIPDP-- 578 (902)
Q Consensus 518 ~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~-~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~-- 578 (902)
.+ .. .. ..+.....+.. .-...+++|++|+++... ....++..+.
T Consensus 280 ~s--------------k~-vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 280 VQ--------------KY-VG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp CC--------------CS-SS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred hc--------------cc-CC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 00 00 00 11122222222 224578999999986320 0111111111
Q ss_pred CCCCCcEEEEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 579 SSENVGKIVVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 579 ~~~~GSkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
....+-.||.||....... .-.-...+.++..+.++-.++|+.++......... -...|++.|.|.
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~Gf 414 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNS 414 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCC
Confidence 1223344555665444321 11235678888889999999998877652211111 256788888875
No 179
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.96 E-value=0.0016 Score=77.17 Aligned_cols=77 Identities=30% Similarity=0.371 Sum_probs=58.7
Q ss_pred CCceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 815 GHRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 815 ~~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
..+.+...+..+..+|. .+.+|++|+|++|.+..+|. .+++|++|+|+ ++.++.+|. |+ .+|++|||++|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls-~N~L~~lp~--l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVR-NNQLTFLPE--LP--ESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECC-SSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECC-CCCCCCcch--hh--CCCCEEECcCCC
Confidence 44555556666666776 67788888888888888876 67788888888 445777887 44 888999999888
Q ss_pred CccCCC
Q 047071 895 INCLPN 900 (902)
Q Consensus 895 I~~LP~ 900 (902)
|+.+|.
T Consensus 192 L~~lp~ 197 (571)
T 3cvr_A 192 LESLPA 197 (571)
T ss_dssp CSSCCC
T ss_pred CCchhh
Confidence 888886
No 180
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.93 E-value=0.00043 Score=74.77 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=48.2
Q ss_pred ccccccEEEeccCCCcccCCCC-----CCCCCccEEEeecCCCCcee-ChhhhcCC---CCccEEEeeCCCCccCCCCC
Q 047071 833 KEWEQAKFIFLMDNELCTLPEK-----PSCSELSVLFLQRNYQLKVI-PMSFFQFM---TSLKVLNLSKTRINCLPNTF 902 (902)
Q Consensus 833 ~~l~~Lr~L~L~~~~i~~LP~~-----~~L~~Lr~L~Ls~c~~L~~L-P~sfIg~L---~~Lr~LdLs~c~I~~LP~sI 902 (902)
..+.+|++|+|++|.+..+|.. ..+++|++|+|++ ..+..+ |+. ++.+ ++|++|+|++|+|+.+|..+
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPS-APRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhh-HHhccCcCcCCEEECCCCCCCchhhhh
Confidence 4566777777777777665552 4667888888884 445555 766 6666 58888888888888888753
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.92 E-value=0.0044 Score=71.62 Aligned_cols=173 Identities=12% Similarity=0.072 Sum_probs=94.3
Q ss_pred CCccccchHHHHHHHHHhhc---C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 453 GLFVSRSTERTVLKILQCIS---G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~---~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
....++|.+..++++.+.+. . .-.+-|.|+|++|+|||+||+.+++.. ...| +.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHH
Confidence 34567888887777666542 1 123458899999999999999998865 2222 22332221110
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh----------------hhhhhcCCCC--CCCC
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI----------------NLQEVGIPDP--SSEN 582 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~--~~~~ 582 (902)
+ ...........+.......+.+|+||+++... .+..+...+. ....
T Consensus 89 ----------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ----------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ----------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ----------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00011112222333345678999999996531 1222221111 1123
Q ss_pred CcEEEEEcccCCccc-c-c---CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 583 VGKIVVASRTVGACL-E-M---DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 583 GSkIIVTTR~~~va~-~-~---~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
+..||.||....... . . .-...+.++..+.++-.++|..++......+. .....|+..+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~--v~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED--VNLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch--hhHHHHHHhcCCCc
Confidence 445666665543321 1 1 12347888888888888888777654211111 12456888888876
No 182
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.92 E-value=0.0014 Score=78.43 Aligned_cols=76 Identities=28% Similarity=0.283 Sum_probs=63.2
Q ss_pred CceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 816 HRFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
...+...+..+..+| ..+.+|+.|+|++|.+..+|. .+++|++|+|++ +.|+.+|.. +++|++|++|+|++|.|
T Consensus 223 L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~-N~L~~lp~~-l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 223 LKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYR-NQLTRLPES-LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCS-SCCCSCCGG-GGGSCTTCEEECCSCCC
T ss_pred CCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCC-CCCCcCCHH-HhhccccCEEEecCCCC
Confidence 344555555667777 456889999999999999997 788999999994 578999999 99999999999999987
Q ss_pred cc
Q 047071 896 NC 897 (902)
Q Consensus 896 ~~ 897 (902)
..
T Consensus 297 ~~ 298 (622)
T 3g06_A 297 SE 298 (622)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 183
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.91 E-value=0.0025 Score=68.22 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHhhcC--------------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG--------------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~--------------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.|...+.. ....-+.|+|++|+|||+||+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999988888877643 234568899999999999999998765
No 184
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.91 E-value=0.00082 Score=82.13 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=63.1
Q ss_pred eeeccCCCCC-CCC-CcccccccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC
Q 047071 818 FLLRAGAGLT-EPP-SLKEWEQAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT 893 (902)
Q Consensus 818 ~l~~~~~~l~-~lp-~l~~l~~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c 893 (902)
.+...+..+. .+| .+..+..|++|+|++|.+. .+|.. +.+++|++|+|++|.--..+|.. +++|..|++|||++|
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCC
Confidence 3444444444 455 6788899999999999887 67776 89999999999955544478888 999999999999999
Q ss_pred CCc-cCCC
Q 047071 894 RIN-CLPN 900 (902)
Q Consensus 894 ~I~-~LP~ 900 (902)
++. .+|.
T Consensus 715 ~l~g~iP~ 722 (768)
T 3rgz_A 715 NLSGPIPE 722 (768)
T ss_dssp EEEEECCS
T ss_pred cccccCCC
Confidence 776 5664
No 185
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.88 E-value=0.00072 Score=82.61 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=60.8
Q ss_pred CcccccccEEEeccCCCcc-cCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc-cCCCC
Q 047071 831 SLKEWEQAKFIFLMDNELC-TLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN-CLPNT 901 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~-~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~-~LP~s 901 (902)
.+..+..|++|+|++|.+. .+|.. +.|++|++|+|++|.--..+|.+ |++|++|++|||++|++. .+|.+
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCGG
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCChH
Confidence 5677889999999999987 57776 99999999999965544589999 999999999999999998 77764
No 186
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.85 E-value=0.002 Score=64.87 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCC----CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCC
Q 047071 462 RTVLKILQCISGV----EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCED 537 (902)
Q Consensus 462 ~ele~L~~~L~~~----~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~ 537 (902)
..++.+.+++... ....+.|+|++|+|||+||+.+++... .....++|+++. .+...+...+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~--- 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQDQ--- 104 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC---C---
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhccc---
Confidence 3445555555432 126889999999999999999998763 223345555432 3444444332211
Q ss_pred CCcchhhHHHHHhhhcCceeEEEEccchh
Q 047071 538 SEADSDVAEKLFHFLNGKKFLLLLDDVWE 566 (902)
Q Consensus 538 ~~~~~~l~~~L~~~L~~kr~LLVLDDV~d 566 (902)
........ +.. .-+|||||++.
T Consensus 105 --~~~~~~~~----~~~-~~~lilDei~~ 126 (202)
T 2w58_A 105 --TMNEKLDY----IKK-VPVLMLDDLGA 126 (202)
T ss_dssp --CCHHHHHH----HHH-SSEEEEEEECC
T ss_pred --hHHHHHHH----hcC-CCEEEEcCCCC
Confidence 22222222 222 24999999954
No 187
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.84 E-value=0.0011 Score=81.74 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=56.7
Q ss_pred CcccccccEEEeccCCCcccC-CCC-CCCCCccEEEeecCCCCce-eCh-hhhcCCCCccEEEeeCCCCccCC
Q 047071 831 SLKEWEQAKFIFLMDNELCTL-PEK-PSCSELSVLFLQRNYQLKV-IPM-SFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~L-P~~-~~L~~Lr~L~Ls~c~~L~~-LP~-sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
.+.++.+|++|+|++|.+..+ |+. .+|++|++|+|++| .+.. +|. .++++|++|++|||++|.+..++
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccc
Confidence 578899999999999999887 555 89999999999965 4553 444 35899999999999999988774
No 188
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.82 E-value=0.00054 Score=74.00 Aligned_cols=63 Identities=32% Similarity=0.413 Sum_probs=36.5
Q ss_pred ccccccEEEeccCCCcccC-CCC-CCC---CCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 833 KEWEQAKFIFLMDNELCTL-PEK-PSC---SELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 833 ~~l~~Lr~L~L~~~~i~~L-P~~-~~L---~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
..+.+|++|+|++|.+..+ |.. ..+ ++|++|+|+ ++.++.+|.. +. ++|++|||++|+|..+|
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~-~~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS-FAGLEQVPKG-LP--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC-SSCCCSCCSC-CC--SCCSCEECCSCCCCSCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC-CCCCCchhhh-hc--CCCCEEECCCCcCCCCc
Confidence 3445666666666666554 433 333 466666666 4446666665 32 56666666666666554
No 189
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.81 E-value=0.00075 Score=78.08 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=65.5
Q ss_pred ceeeccCCCCCCCCCcccccccEEEeccCCCcccCCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 817 RFLLRAGAGLTEPPSLKEWEQAKFIFLMDNELCTLPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 817 ~~l~~~~~~l~~lp~l~~l~~Lr~L~L~~~~i~~LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
..+...+..+..+|....+.+|++|+|++|.+..+|.. ..+++|++|+|+ ++.+..+|.. ++.+++|++|+|++|.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~-l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR-NNKLVLIEKA-LRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT-TSCCCEECTT-CCCCTTCCEEECTTCCB
T ss_pred cEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEec-CCcCcccchh-hccCCCCCEEEcCCCCC
Confidence 34444455566666666789999999999999998876 889999999999 5679999999 99999999999999977
Q ss_pred c
Q 047071 896 N 896 (902)
Q Consensus 896 ~ 896 (902)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 6
No 190
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.80 E-value=0.002 Score=75.77 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=56.0
Q ss_pred CceeeccCCCCCCCC-CcccccccEEEeccCCCcccCCC-C-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeC
Q 047071 816 HRFLLRAGAGLTEPP-SLKEWEQAKFIFLMDNELCTLPE-K-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSK 892 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp-~l~~l~~Lr~L~L~~~~i~~LP~-~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~ 892 (902)
.+.+...+..+..+| .+..+.+|++|++++|.+..++. . ..+++|++|+|++|.....+|...++++++|++|+|++
T Consensus 280 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp CSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 344444555566666 46677777777777777776543 3 67777788888766544466665577888888888888
Q ss_pred CCCccC
Q 047071 893 TRINCL 898 (902)
Q Consensus 893 c~I~~L 898 (902)
|.+..+
T Consensus 360 n~l~~~ 365 (606)
T 3t6q_A 360 DDIETS 365 (606)
T ss_dssp SCCCEE
T ss_pred Cccccc
Confidence 777655
No 191
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.79 E-value=0.0018 Score=69.54 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHhhcCC---------CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISGV---------EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~~---------~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3579999988888877431 13579999999999999999998765
No 192
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.78 E-value=0.00076 Score=72.94 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=48.0
Q ss_pred CceeeccCCCCCCCC--CcccccccEEEeccCCCccc---CC-CC--CCCCCccEEEeecCCCCc---eeChhhhcCCCC
Q 047071 816 HRFLLRAGAGLTEPP--SLKEWEQAKFIFLMDNELCT---LP-EK--PSCSELSVLFLQRNYQLK---VIPMSFFQFMTS 884 (902)
Q Consensus 816 ~~~l~~~~~~l~~lp--~l~~l~~Lr~L~L~~~~i~~---LP-~~--~~L~~Lr~L~Ls~c~~L~---~LP~sfIg~L~~ 884 (902)
.+.+...+..+..++ .+..+++|++|+|++|.+.. +| .. ..+++|++|+|++| .+. .+|..++.+|++
T Consensus 151 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQ 229 (312)
T ss_dssp CCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCC
T ss_pred CcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCC
Confidence 334444444455544 45666677777777766432 11 22 56677777777733 455 344444566777
Q ss_pred ccEEEeeCCCCccCC
Q 047071 885 LKVLNLSKTRINCLP 899 (902)
Q Consensus 885 Lr~LdLs~c~I~~LP 899 (902)
|++|||++|+|...+
T Consensus 230 L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAA 244 (312)
T ss_dssp CSEEECTTSCCCSSC
T ss_pred CCEEECCCCcCCccc
Confidence 777777777776644
No 193
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.01 Score=67.39 Aligned_cols=172 Identities=12% Similarity=0.086 Sum_probs=95.2
Q ss_pred cCCccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 452 FGLFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
.....+.|.+..+++|.+.+. . ..++-|.++|++|.|||.||+++++.. ...| +.++.+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHhh
Confidence 344556889988888877552 1 245779999999999999999999876 3333 222221110
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhh-hcCceeEEEEccchhhh----------------hhhhhcCCCC--C
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHF-LNGKKFLLLLDDVWEQI----------------NLQEVGIPDP--S 579 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~-L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~--~ 579 (902)
... ....+.....+... -...+++|++|+++... .+..++..+. .
T Consensus 254 --------------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 --------------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp --------------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred --------------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 000 00112222222222 24568999999986320 0111211111 1
Q ss_pred CCCCcEEEEEcccCCccc-cc----CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCC
Q 047071 580 SENVGKIVVASRTVGACL-EM----DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGL 646 (902)
Q Consensus 580 ~~~GSkIIVTTR~~~va~-~~----~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~Gl 646 (902)
...+-.||.||....... .+ .-...+.++..+.++-.++|..++......+. --...|++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d--vdl~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED--VNLETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC--CCHHHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc--CCHHHHHHhCCCC
Confidence 223445566665544322 11 12456788888888888999887755211111 1256777887775
No 194
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.72 E-value=0.0017 Score=68.60 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=33.4
Q ss_pred ccccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 455 FVSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|.+..+.++.+.+.. ....-|.|+|.+|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4568988888888776632 233567799999999999999998765
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.62 E-value=0.00075 Score=64.79 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 458888888888887643 233457799999999999999997755
No 196
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.62 E-value=0.02 Score=62.78 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=89.8
Q ss_pred ccccchHHHHHHHHHhhcC-----CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHH
Q 047071 455 FVSRSTERTVLKILQCISG-----VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~-----~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
...+|.+..++.+...+.. .....+.|+|++|+||||||+.+++... ..|.. .+..-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~~~---~sg~~~~~~--------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNIHV---TSGPVLVKQ--------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCEEE---EETTTCCSH---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEE---EechHhcCH---------
Confidence 4458888777777666642 2446799999999999999999988652 22211 110000011
Q ss_pred hcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcC---CCC-C----CC----------CCcEEE-E
Q 047071 530 QLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGI---PDP-S----SE----------NVGKIV-V 588 (902)
Q Consensus 530 ~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~---~l~-~----~~----------~GSkII-V 588 (902)
.+... +...+ .++.++++|++.... ..+.+.. ... . .+ +...++ .
T Consensus 91 ------------~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 91 ------------GDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp ------------HHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred ------------HHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 11111 11112 234467778775431 1111110 000 0 00 011222 3
Q ss_pred EcccCCccccc--CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 589 ASRTVGACLEM--DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 589 TTR~~~va~~~--~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
|++...+.... .....+.+++.+.++-.+++...+.. ....-..+.+..|++.++|.|-.+..
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 44433321111 11245789999999999999887643 11123346788999999999965443
No 197
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.59 E-value=0.014 Score=66.89 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=35.9
Q ss_pred CccccchHHHHHHHHHhh---cCC--CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 454 LFVSRSTERTVLKILQCI---SGV--EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L---~~~--~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++|.+..++.+..++ ..+ ..+-+.++|++|+|||+||+.+++..
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 456799998887665544 332 33578899999999999999998765
No 198
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.55 E-value=0.0017 Score=70.14 Aligned_cols=61 Identities=21% Similarity=0.091 Sum_probs=38.0
Q ss_pred cccccccEEEeccCCCcccCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCCc
Q 047071 832 LKEWEQAKFIFLMDNELCTLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+..+.+|++|+|++|.+..+|..-. ++|++|+|+ ...++.+|. +..|++|++|+|+++.|.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls-~N~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLS-YNRLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECC-SSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred hhhcCCCCEEECCCCccChhhhhcc-CCceEEECC-CCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence 3445666677777666666665522 666777776 445666654 566677777777666554
No 199
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.50 E-value=0.0077 Score=73.66 Aligned_cols=173 Identities=10% Similarity=0.125 Sum_probs=94.4
Q ss_pred CCccccchHHHHHHHHHhh----cC---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 453 GLFVSRSTERTVLKILQCI----SG---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L----~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
....+.|.+..+++|.+.+ .. ..++-|.++|++|.|||+||+.+++.. ..+| +.++.+.
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~--- 273 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE--- 273 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHH---
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHH---
Confidence 3445567666666665543 11 245779999999999999999999876 3332 2332211
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--------h-----hhhhcCCCCC--CCCCc
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--------N-----LQEVGIPDPS--SENVG 584 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--------~-----~~~L~~~l~~--~~~GS 584 (902)
+.... .......+...+.......+.+|+||+++... + ...+...+.. ...+-
T Consensus 274 -------l~sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -------IMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -------HHSSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -------hhccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11110 01012222223333345678999999997431 0 1112111111 11233
Q ss_pred EEEEEcccCCcc-ccc----CcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 585 KIVVASRTVGAC-LEM----DASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 585 kIIVTTR~~~va-~~~----~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
.||.||...... ..+ .-...+.+...+.++-.++|..+........ ......|++.+.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~--dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD--DVDLEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT--TCCHHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc--ccCHHHHHHhcCCCC
Confidence 445555543321 111 2345788999999999999987765521111 122567888888865
No 200
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.36 E-value=0.021 Score=59.62 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=32.8
Q ss_pred CCccccchHHHHHHHHHhhc---C---------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 453 GLFVSRSTERTVLKILQCIS---G---------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~---~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....++|.+..+.++.++.. . .-.+-+.|+|++|+||||||+.+++..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34456777766555544331 1 112238999999999999999999876
No 201
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.23 E-value=0.024 Score=60.18 Aligned_cols=172 Identities=10% Similarity=0.072 Sum_probs=84.9
Q ss_pred CCccccchHHHHHHHHHhhc---C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 453 GLFVSRSTERTVLKILQCIS---G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 453 ~~~~~VGRe~ele~L~~~L~---~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
....++|.+..++++.++.. . .-.+-+.|+|++|+||||||+.++.... .. .+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~---~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CC---EEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CC---EEEecHH-----
Confidence 34456777766665554432 1 1112389999999999999999998763 22 2233211
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhh------------h----hhhhcCCCCCCC--
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQI------------N----LQEVGIPDPSSE-- 581 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~------------~----~~~L~~~l~~~~-- 581 (902)
++ ..... . ........+.+.. ...+.++++|+++... . ...+...+....
T Consensus 108 -~~----~~~~~-----~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -DF----VEMFV-----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -HH----HHSTT-----T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -HH----HHHHh-----h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 11000 0 0111112222222 2356899999996321 1 112211121111
Q ss_pred CCcEEEEEcccCCcccc-----cCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 582 NVGKIVVASRTVGACLE-----MDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 582 ~GSkIIVTTR~~~va~~-----~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
....++.+|....+... ..-...+.++..+.++-.+++...+......+ ......|+..+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~--~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE--DVDLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCT--TCCHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCc--ccCHHHHHHHcCCCC
Confidence 12334445555544221 12345788888888888888876654311111 112345566555543
No 202
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.22 E-value=0.0028 Score=77.50 Aligned_cols=145 Identities=15% Similarity=0.138 Sum_probs=78.8
Q ss_pred cccchHHHHHHHHHhhcC---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHH
Q 047071 456 VSRSTERTVLKILQCISG---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQND 526 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~ 526 (902)
.++|.+..++.+...+.. .....+.++|++|+|||+||+.+++... ..-...+.++++...+...
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~---- 565 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHS---- 565 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCC----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcccccc----
Confidence 468999998888887742 1223699999999999999999987651 1112234444443211000
Q ss_pred HHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh--hhhhhcC-----CCCC------CCCCcEEEEEcccC
Q 047071 527 VLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI--NLQEVGI-----PDPS------SENVGKIVVASRTV 593 (902)
Q Consensus 527 Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~--~~~~L~~-----~l~~------~~~GSkIIVTTR~~ 593 (902)
. ....+...++ .....+|+||+++... ....|.. .+.. ...+.+||+||...
T Consensus 566 ---------~---~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 566 ---------T---SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ---------C---C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ---------c---ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0 0111111221 1234589999997542 1222211 1111 12355788888632
Q ss_pred C-----------------cccccCcceeEEecccCHHHHHHHHHHHh
Q 047071 594 G-----------------ACLEMDASKLIEVETVSKKEAWELFYEQV 623 (902)
Q Consensus 594 ~-----------------va~~~~~~~~~~L~~Ls~ees~~LF~~~a 623 (902)
. +...+ ...+.+.+|+.++-..++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 1 11111 2578899999988888776544
No 203
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.08 E-value=0.04 Score=63.98 Aligned_cols=170 Identities=9% Similarity=0.058 Sum_probs=88.8
Q ss_pred cCCccccchHHHHHHHHHhh---cC---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc
Q 047071 452 FGLFVSRSTERTVLKILQCI---SG---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS 519 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L---~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~ 519 (902)
.....++|.+..++++.++. .. .-.+-+.|+|++|+|||+||+.+++... .. .+.++.+.-.+
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~---~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CC---EEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEEehhHHHH
Confidence 34456788887766665543 21 1123489999999999999999988763 22 23333222110
Q ss_pred HHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc----CceeEEEEccchhhh------------h----hhhhcCCCCC
Q 047071 520 VRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN----GKKFLLLLDDVWEQI------------N----LQEVGIPDPS 579 (902)
Q Consensus 520 ~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~----~kr~LLVLDDV~d~~------------~----~~~L~~~l~~ 579 (902)
. ........+...+. ..+.++++|+++... + +..+...+..
T Consensus 103 ~-------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 M-------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp S-------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred h-------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 00111112222221 245799999996421 1 1222211211
Q ss_pred --CCCCcEEEEEcccCCccc-----ccCcceeEEecccCHHHHHHHHHHHhcCcccCCCCcchHHHHHHHhCCCc
Q 047071 580 --SENVGKIVVASRTVGACL-----EMDASKLIEVETVSKKEAWELFYEQVGRVIELPHIQPFAQTIVYGCGGLP 647 (902)
Q Consensus 580 --~~~GSkIIVTTR~~~va~-----~~~~~~~~~L~~Ls~ees~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlP 647 (902)
...+..++.+|....... ...-...+.++..+.++-.+++..++......+ ......|+..+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~--dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE--DVDLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC--SSTTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHhcCCCC
Confidence 122334555555544321 112245788999999988888877654311111 112455677777765
No 204
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.07 E-value=0.0044 Score=67.33 Aligned_cols=45 Identities=27% Similarity=0.295 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468888888888887743 334567799999999999999998754
No 205
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.06 E-value=0.033 Score=59.42 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=76.8
Q ss_pred CccccchHHHHHHHHHhhc----C---------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcH
Q 047071 454 LFVSRSTERTVLKILQCIS----G---------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSV 520 (902)
Q Consensus 454 ~~~~VGRe~ele~L~~~L~----~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~ 520 (902)
...+.|.+..+++|...+. . .-.+-+.|+|++|.||||||+.++..... ..+++....-.+.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 3445677766666665431 1 11223999999999999999999886532 2233432211100
Q ss_pred HHHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchhhhh-------------hhhhcCCCCC--CCCCc
Q 047071 521 RKIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWEQIN-------------LQEVGIPDPS--SENVG 584 (902)
Q Consensus 521 ~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d~~~-------------~~~L~~~l~~--~~~GS 584 (902)
...........+.+.. ...+.++++|+++.... ...+...+.. .....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0000111112222222 34568899999864210 0111111111 11233
Q ss_pred EEEEEcccCCcccc-----cCcceeEEecccCHHHHHHHHHHHhc
Q 047071 585 KIVVASRTVGACLE-----MDASKLIEVETVSKKEAWELFYEQVG 624 (902)
Q Consensus 585 kIIVTTR~~~va~~-----~~~~~~~~L~~Ls~ees~~LF~~~af 624 (902)
-++.+|....+... ..-...+.++..+.++-.++|.....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 45556655554321 12346778899999998899887664
No 206
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.05 E-value=0.013 Score=59.22 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=49.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCc-----------CC-CCCCcch
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPL-----------YC-EDSEADS 542 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~-----------~~-~~~~~~~ 542 (902)
.-.++.|+|++|+|||||+..++. . .-..++|++....++...+.. ++..++. .. .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999987 1 224677887766555544432 3333221 11 1111112
Q ss_pred hhHHHHHhhhcCceeEEEEccch
Q 047071 543 DVAEKLFHFLNGKKFLLLLDDVW 565 (902)
Q Consensus 543 ~l~~~L~~~L~~kr~LLVLDDV~ 565 (902)
.....++..+..+.-+||||.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 23333444443356788998764
No 207
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.90 E-value=0.0031 Score=68.22 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=51.5
Q ss_pred cccccccEEEeccCCCccc-CCCC-CCCCCccEEEeecCCCCc--eeChhhhcCCCCccEEEeeCC-CCcc
Q 047071 832 LKEWEQAKFIFLMDNELCT-LPEK-PSCSELSVLFLQRNYQLK--VIPMSFFQFMTSLKVLNLSKT-RINC 897 (902)
Q Consensus 832 l~~l~~Lr~L~L~~~~i~~-LP~~-~~L~~Lr~L~Ls~c~~L~--~LP~sfIg~L~~Lr~LdLs~c-~I~~ 897 (902)
+..+++|++|+|++|.+.. .|.. ..+++|++|+|++|..+. .+|.. ++++++|++|+|++| ++..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh
Confidence 5667889999999887653 4444 778999999999886776 37776 888999999999999 8763
No 208
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.85 E-value=0.0042 Score=62.27 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=48.5
Q ss_pred CcccccccEEEeccCCC-ccc--CCCCCC----CCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCC-CCc
Q 047071 831 SLKEWEQAKFIFLMDNE-LCT--LPEKPS----CSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKT-RIN 896 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~-i~~--LP~~~~----L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c-~I~ 896 (902)
.+..+++|+.|+|++|. +.. +..... +++|++|+|++|.+|+.---..+.++++|++|+|++| +|+
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 46678899999999984 432 222233 3579999999999886533223778999999999999 675
No 209
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.81 E-value=0.024 Score=66.54 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHhhc------CCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 457 SRSTERTVLKILQCIS------GVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~------~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.+.....+.+.+. ......+.|+|++|+||||||+.++...
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4777766666654431 1245689999999999999999998765
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.79 E-value=0.025 Score=69.64 Aligned_cols=153 Identities=11% Similarity=0.126 Sum_probs=83.7
Q ss_pred cCCccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC
Q 047071 452 FGLFVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW 518 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~ 518 (902)
.....++|.+..+++|.+++.. .....|.|+|++|+||||||+.+++.. ...| +.++...
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l--~~~~---i~v~~~~-- 273 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE-- 273 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT--TCEE---EEEEHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCcE---EEEEchH--
Confidence 4456678888877777776631 234579999999999999999998765 2222 3332211
Q ss_pred cHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCceeEEEEccchhhh----------------hhhhhcCCCCCCCC
Q 047071 519 SVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKKFLLLLDDVWEQI----------------NLQEVGIPDPSSEN 582 (902)
Q Consensus 519 ~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr~LLVLDDV~d~~----------------~~~~L~~~l~~~~~ 582 (902)
+.. .. ...........+.......+.++++|+++... .+..+...+. ...
T Consensus 274 --------l~~----~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~ 339 (806)
T 1ypw_A 274 --------IMS----KL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp --------HSS----SS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTS
T ss_pred --------hhh----hh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccc
Confidence 000 00 00011111222223334567899999995321 1112211111 112
Q ss_pred CcEEEEEcccCCcc-ccc----CcceeEEecccCHHHHHHHHHHHhcC
Q 047071 583 VGKIVVASRTVGAC-LEM----DASKLIEVETVSKKEAWELFYEQVGR 625 (902)
Q Consensus 583 GSkIIVTTR~~~va-~~~----~~~~~~~L~~Ls~ees~~LF~~~af~ 625 (902)
+..+|.||...... ..+ .-...+.+...+.++-.+++...+..
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 34555566543221 111 12355778888899999998877654
No 211
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.72 E-value=0.0026 Score=68.82 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=50.3
Q ss_pred CcccccccEEEeccCC-Cccc--CCCC-CCCCCccEEEeecCCCCce--eChhhhcCCC-CccEEEeeCCC
Q 047071 831 SLKEWEQAKFIFLMDN-ELCT--LPEK-PSCSELSVLFLQRNYQLKV--IPMSFFQFMT-SLKVLNLSKTR 894 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~-~i~~--LP~~-~~L~~Lr~L~Ls~c~~L~~--LP~sfIg~L~-~Lr~LdLs~c~ 894 (902)
.+..+++|++|+|++| .+.. +|.. ..+++|++|+|++|..+.. +|.. +++++ +|++|+|++|.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCG
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCc
Confidence 3556788999999998 5663 6664 7889999999997767765 6776 88999 99999999983
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.71 E-value=0.0044 Score=67.87 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=44.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec--cccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV--SRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v--s~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
-+++.|+|++|+|||+||.+++... -..++|++. .+..+. . . .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v~~----------~-----~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPLSG----------Y-----N-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSSTT----------C-----B-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhhhh----------h-----h-cCHHHHHHHHHHHHh
Confidence 3577899999999999999998651 112355655 222110 0 0 245555666666666
Q ss_pred CceeEEEEccchh
Q 047071 554 GKKFLLLLDDVWE 566 (902)
Q Consensus 554 ~kr~LLVLDDV~d 566 (902)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 666 999999854
No 213
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.58 E-value=0.0014 Score=72.83 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=50.6
Q ss_pred CcccccccEEEeccCCCccc-----CCCC---CCCCCccEEEeecCCCCce-----eChhhhcCCCCccEEEeeCCCCcc
Q 047071 831 SLKEWEQAKFIFLMDNELCT-----LPEK---PSCSELSVLFLQRNYQLKV-----IPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i~~-----LP~~---~~L~~Lr~L~Ls~c~~L~~-----LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
.+..+++|++|+|++|.+.. +|.. +++++|++|+|++| .+.. +|..+..+|++|++|+|++|.|..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 35677888999999887754 3443 45888999999854 4665 888833778999999999987765
Q ss_pred CC
Q 047071 898 LP 899 (902)
Q Consensus 898 LP 899 (902)
.+
T Consensus 318 ~~ 319 (386)
T 2ca6_A 318 ED 319 (386)
T ss_dssp TS
T ss_pred ch
Confidence 43
No 214
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.53 E-value=0.0021 Score=64.42 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=45.3
Q ss_pred ccEEEeccCCCccc--CCCCCCCCCccEEEeecCCCCceeChhhhcCC----CCccEEEeeCC-CCc
Q 047071 837 QAKFIFLMDNELCT--LPEKPSCSELSVLFLQRNYQLKVIPMSFFQFM----TSLKVLNLSKT-RIN 896 (902)
Q Consensus 837 ~Lr~L~L~~~~i~~--LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L----~~Lr~LdLs~c-~I~ 896 (902)
.|..|||++|.+.. +.....|++|+.|+|++|..++.---..|..+ ++|++|||++| +|+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 68999999997643 44447899999999999998765332225555 36999999999 675
No 215
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.53 E-value=0.018 Score=62.56 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=62.2
Q ss_pred CCCCCC--CcccccccEEEeccCCCcccCCCC--CCCCCcc-EEEeecCCCCceeChhhhcCCCCccEEEeeCCCCccCC
Q 047071 825 GLTEPP--SLKEWEQAKFIFLMDNELCTLPEK--PSCSELS-VLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRINCLP 899 (902)
Q Consensus 825 ~l~~lp--~l~~l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr-~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I~~LP 899 (902)
.+..+| .+..+.+|+.|+|.++ +..+++. ..|.+|+ .|.|.. +++.|++..|.++.+|+.|+|++++|+.+|
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 345555 4778889999999886 8888887 8899999 999984 899999877999999999999999998888
Q ss_pred CC
Q 047071 900 NT 901 (902)
Q Consensus 900 ~s 901 (902)
..
T Consensus 314 ~~ 315 (329)
T 3sb4_A 314 DE 315 (329)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.44 E-value=0.02 Score=55.47 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.-..+.|+|+.|+|||||++.+++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999988663
No 217
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.17 E-value=0.022 Score=61.31 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999876
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.10 E-value=0.011 Score=63.19 Aligned_cols=22 Identities=27% Similarity=0.080 Sum_probs=12.3
Q ss_pred EEEEecCCCCChhhHHHHHhhc
Q 047071 478 KIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d 499 (902)
-|.|-+.....|+.|...+-+.
T Consensus 26 kv~I~~g~ky~k~~ll~~i~~~ 47 (267)
T 3rw6_A 26 KITIPYGRKYDKAWLLSMIQSK 47 (267)
T ss_dssp EEEETTGGGSCHHHHHHHHHHT
T ss_pred EEEecCccccCHHHHHHHHHHh
Confidence 3555555555666666666443
No 219
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.01 E-value=0.025 Score=61.48 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhhcCC---CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 459 STERTVLKILQCISGV---EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 459 GRe~ele~L~~~L~~~---~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++...++.+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555566666531 24678899999999999999998866
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.94 E-value=0.033 Score=67.88 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=35.7
Q ss_pred cccchHHHHHHHHHhhcC---------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG---------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458999888888776642 123478999999999999999998765
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.81 E-value=0.024 Score=57.54 Aligned_cols=37 Identities=30% Similarity=0.220 Sum_probs=26.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV 514 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v 514 (902)
-.++.|+|++|+|||||+..++...... -..++|+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEc
Confidence 3689999999999999999998554211 123556554
No 222
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.80 E-value=0.035 Score=61.69 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=52.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLFH 550 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~~ 550 (902)
-.++.|.|++|+||||||.+++.... ..-..++|++....++.. .++.++... ....+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46999999999999999999986652 111346788776665543 333333221 122345555555554
Q ss_pred hhc-CceeEEEEccchh
Q 047071 551 FLN-GKKFLLLLDDVWE 566 (902)
Q Consensus 551 ~L~-~kr~LLVLDDV~d 566 (902)
.++ .+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 443 4566899998743
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.80 E-value=0.05 Score=55.77 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=50.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEEeeccccCcHHHHHHHHHHhcCcCC---------CCCCcch
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIILVTVSRYWSVRKIQNDVLRQLPLYC---------EDSEADS 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~---------~~~~~~~ 542 (902)
-.++.|+|++|+|||||+..++....... .-..++|++....+...++. .+++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999987432111 13567888776654444332 3334443211 0111222
Q ss_pred hh---HHHHHhhhc-CceeEEEEccch
Q 047071 543 DV---AEKLFHFLN-GKKFLLLLDDVW 565 (902)
Q Consensus 543 ~l---~~~L~~~L~-~kr~LLVLDDV~ 565 (902)
+. ...+.+.+. .+.-+||||.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 21 222334443 466788888874
No 224
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.67 E-value=0.01 Score=65.81 Aligned_cols=65 Identities=25% Similarity=0.225 Sum_probs=51.3
Q ss_pred CcccccccEEEeccCCCc-----ccCCCC-CCCCCccEEEeecCCCCce-----eChhhh--cCCCCccEEEeeCCCCcc
Q 047071 831 SLKEWEQAKFIFLMDNEL-----CTLPEK-PSCSELSVLFLQRNYQLKV-----IPMSFF--QFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 831 ~l~~l~~Lr~L~L~~~~i-----~~LP~~-~~L~~Lr~L~Ls~c~~L~~-----LP~sfI--g~L~~Lr~LdLs~c~I~~ 897 (902)
.+..+++|++|+|++|.+ ..+|.. ..+++|++|+|++|. +.. +|.. + +++++|++|+|++|.|..
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDA-FSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHH-HHTCSSCCCCEEECCSSCCBH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHH-HhhccCCCeEEEECcCCcCCH
Confidence 567788899999999887 556765 788899999999654 543 4666 6 458999999999998876
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.55 E-value=0.079 Score=57.26 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=46.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc-cCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR-YWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~-~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
...+++|+|++|+||||++..++........ ..+.++.... .....+.+....+..+.+.....+...+...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 4579999999999999999998766532122 2344444322 222333444444444433211122333333333 23
Q ss_pred CceeEEEEccc
Q 047071 554 GKKFLLLLDDV 564 (902)
Q Consensus 554 ~kr~LLVLDDV 564 (902)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44457888843
No 226
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.50 E-value=0.077 Score=57.87 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=54.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhccccccc----ccEEEEeeccccCcHHHHHHHHHHhcCcCC---------CCCCcch
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLI----FDVIILVTVSRYWSVRKIQNDVLRQLPLYC---------EDSEADS 542 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~----Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~---------~~~~~~~ 542 (902)
-.++.|+|++|+||||||.+++........ -..++|++....++..++.. +++.++... ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999998765421111 24678998887776665543 344443321 0111222
Q ss_pred ---hhHHHHHhhhc--CceeEEEEccchh
Q 047071 543 ---DVAEKLFHFLN--GKKFLLLLDDVWE 566 (902)
Q Consensus 543 ---~l~~~L~~~L~--~kr~LLVLDDV~d 566 (902)
++...+...++ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23334444443 4567899998753
No 227
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.27 E-value=0.12 Score=56.95 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=54.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEEeeccccCcHHHHHHHHHHhcCcCC---------CCCCcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIILVTVSRYWSVRKIQNDVLRQLPLYC---------EDSEAD 541 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~---------~~~~~~ 541 (902)
.-.++.|+|++|+||||||.+++....... .-..++|++....++..++.. ++..++... ....+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 346899999999999999999886532111 224688998887777665543 334443221 011122
Q ss_pred h---hhHHHHHhhhc---CceeEEEEccchh
Q 047071 542 S---DVAEKLFHFLN---GKKFLLLLDDVWE 566 (902)
Q Consensus 542 ~---~l~~~L~~~L~---~kr~LLVLDDV~d 566 (902)
+ ++...+...+. .+.-|||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2 22333344443 4566888888743
No 228
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.23 E-value=0.064 Score=59.84 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=52.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLFH 550 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~~ 550 (902)
-.++.|.|.+|+||||||.+++.... ..-..++|++....++.. .++.++... ....+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 46899999999999999998876542 122367899887766543 133343321 112244555555555
Q ss_pred hhc-CceeEEEEccch
Q 047071 551 FLN-GKKFLLLLDDVW 565 (902)
Q Consensus 551 ~L~-~kr~LLVLDDV~ 565 (902)
.++ ...-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 444 345689999874
No 229
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.13 E-value=0.04 Score=55.60 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhcC---CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 460 TERTVLKILQCISG---VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 460 Re~ele~L~~~L~~---~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|+..++.|.+.+.. ....+|+|.|+.|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55666777776653 345799999999999999999987644
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.01 E-value=0.076 Score=57.64 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=53.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccc---------cc-----cEEEEeeccccCcHHHHHHHHHHhcCcCC-----
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKL---------IF-----DVIILVTVSRYWSVRKIQNDVLRQLPLYC----- 535 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~---------~F-----d~i~WV~vs~~~~~~~ll~~Il~~L~~~~----- 535 (902)
.-.++.|+|.+|+|||+||.+++....... .. ..++|++....++..++... ++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 346899999999999999999876431111 11 46889988887766665533 34443211
Q ss_pred ----CCCCcch---hhHHHHHhhhc--CceeEEEEccch
Q 047071 536 ----EDSEADS---DVAEKLFHFLN--GKKFLLLLDDVW 565 (902)
Q Consensus 536 ----~~~~~~~---~l~~~L~~~L~--~kr~LLVLDDV~ 565 (902)
....+.+ ++...+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1111222 23334444443 345688888874
No 231
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=93.91 E-value=0.059 Score=58.41 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=57.2
Q ss_pred ccccEEEeccCCCcccCCCC--CCCCCccEEEeecCCCCceeChhhhcCCCCcc-EEEeeCCCCccCCCC
Q 047071 835 WEQAKFIFLMDNELCTLPEK--PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLK-VLNLSKTRINCLPNT 901 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~LP~~--~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr-~LdLs~c~I~~LP~s 901 (902)
+.+|+.|+|+++.+..+|+. ..|.+|+.|+|.. +++.||+..|.++.+|+ .|+|.+ +++.+++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT-TCCEECTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc-cceEEchh
Confidence 67899999999999999987 8999999999984 49999999899999999 999988 77777653
No 232
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.90 E-value=0.033 Score=60.57 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=35.9
Q ss_pred cCCccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 452 FGLFVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 452 ~~~~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+....++|.+..+..+...+......-+.|+|++|+|||+||+.+++..
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3445679998876665544433333448899999999999999998765
No 233
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.89 E-value=0.083 Score=58.49 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=52.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-.++.|.|++|+||||||.+++.... ..=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999999875542 122357888877666543 233443221 11223444444444
Q ss_pred hhhc-CceeEEEEccchh
Q 047071 550 HFLN-GKKFLLLLDDVWE 566 (902)
Q Consensus 550 ~~L~-~kr~LLVLDDV~d 566 (902)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3567999998754
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.85 E-value=0.041 Score=68.10 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHhhcC---------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG---------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~---------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.+...+.. .....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999988888777642 123578999999999999999998765
No 235
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.71 E-value=0.1 Score=57.02 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=52.4
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhh-HHHHHh
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDV-AEKLFH 550 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l-~~~L~~ 550 (902)
.++-|.|++|+|||||+.+++.....+..-..++|++....++.. .++.++... ....+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999998887654211112467899887777653 255555432 112244444 322222
Q ss_pred h--h-cCceeEEEEccchh
Q 047071 551 F--L-NGKKFLLLLDDVWE 566 (902)
Q Consensus 551 ~--L-~~kr~LLVLDDV~d 566 (902)
. + .++.-|||+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 2 35677999998853
No 236
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.63 E-value=0.097 Score=58.13 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=51.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-+++.|.|.+|+||||||.+++.... ..-..++|++....++... +..++... ....+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999876542 1223578888877665432 33343221 11123344444443
Q ss_pred hhh-cCceeEEEEccchh
Q 047071 550 HFL-NGKKFLLLLDDVWE 566 (902)
Q Consensus 550 ~~L-~~kr~LLVLDDV~d 566 (902)
... ..+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 333 24556999998753
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.60 E-value=0.065 Score=54.30 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHhhcC--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 463 TVLKILQCISG--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 463 ele~L~~~L~~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-+++|.+.+.. ....+|+|+|+.|.|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555543 355799999999999999999997655
No 238
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.57 E-value=0.078 Score=57.96 Aligned_cols=163 Identities=10% Similarity=-0.060 Sum_probs=93.8
Q ss_pred HHHhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHH
Q 047071 467 ILQCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAE 546 (902)
Q Consensus 467 L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~ 546 (902)
+.+.|...-.++..++|+.|.||++.+..+.+... ...|+....+.+....++.++. .
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~---------------------~ 66 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIF---------------------S 66 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHH---------------------H
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHH---------------------H
Confidence 33444333456899999999999999988876542 2233221111222223333322 2
Q ss_pred HHHh-hhcCceeEEEEccchh-h--hhhhhhcCCCCCCCCCcEEEEEccc-C------Ccccc-cCcceeEEecccCHHH
Q 047071 547 KLFH-FLNGKKFLLLLDDVWE-Q--INLQEVGIPDPSSENVGKIVVASRT-V------GACLE-MDASKLIEVETVSKKE 614 (902)
Q Consensus 547 ~L~~-~L~~kr~LLVLDDV~d-~--~~~~~L~~~l~~~~~GSkIIVTTR~-~------~va~~-~~~~~~~~L~~Ls~ee 614 (902)
.+.. -+-+++-++|+|+++. . ..++.+...+....+++.+|+++.. . .+... ......++..+++.++
T Consensus 67 ~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 67 LCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp HHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred HhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 2221 2345667888999865 3 4455554444444456777766643 1 12221 2345688999999999
Q ss_pred HHHHHHHHhcCcccCCCCcchHHHHHHHhCCCcchhhh
Q 047071 615 AWELFYEQVGRVIELPHIQPFAQTIVYGCGGLPLLIIV 652 (902)
Q Consensus 615 s~~LF~~~af~~~~~~~l~~ia~~Ia~~c~GlPLAL~v 652 (902)
-...+...+.. ..-.-..+.+..|++.++|.+..+..
T Consensus 147 l~~~l~~~~~~-~g~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 147 LPRWVAARAKQ-LNLELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHH-TTCEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHhchHHHHHHH
Confidence 88888776633 11112235677888888988776654
No 239
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.34 E-value=0.24 Score=56.46 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.+.+|.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988876553
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.12 E-value=0.028 Score=58.40 Aligned_cols=113 Identities=11% Similarity=-0.067 Sum_probs=59.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCC--CCcchhhHHHHHhhh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCED--SEADSDVAEKLFHFL 552 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~--~~~~~~l~~~L~~~L 552 (902)
.-.++.|+|..|+||||++..+.+....+ -..++.+..... .. ....++..++..... .....++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 34688999999999999998887766322 222333322211 11 112334444432211 112334444444444
Q ss_pred cCc-eeEEEEccchhh--hhhhhhcCCCCCCCCCcEEEEEcccCCc
Q 047071 553 NGK-KFLLLLDDVWEQ--INLQEVGIPDPSSENVGKIVVASRTVGA 595 (902)
Q Consensus 553 ~~k-r~LLVLDDV~d~--~~~~~L~~~l~~~~~GSkIIVTTR~~~v 595 (902)
.+. .-+||+|.+... ++++.+.. +.+ .|-.||+|.+....
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCT
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccccc
Confidence 444 449999998643 22222211 111 26789999986543
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.08 E-value=0.042 Score=52.82 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=18.8
Q ss_pred eEEEEecCCCCChhhHHHHH
Q 047071 477 GKIGIHGISGIGKTTVLKAL 496 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~v 496 (902)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 242
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.03 E-value=0.046 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.025 Sum_probs=21.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999997654
No 243
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.85 E-value=0.32 Score=55.39 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
...+|.++|++|+||||++..++....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999886663
No 244
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.84 E-value=0.069 Score=54.21 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 464 VLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 464 le~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+.+...+.......|.|+|.+|+|||||+..++...
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444444567899999999999999999998764
No 245
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=92.82 E-value=0.029 Score=61.70 Aligned_cols=60 Identities=22% Similarity=0.170 Sum_probs=35.8
Q ss_pred cccEEEeccCCCcccCCCC------CCC-CCccEEEeecCCCCceeChhhhc----C-CCCccEEEeeCCCCc
Q 047071 836 EQAKFIFLMDNELCTLPEK------PSC-SELSVLFLQRNYQLKVIPMSFFQ----F-MTSLKVLNLSKTRIN 896 (902)
Q Consensus 836 ~~Lr~L~L~~~~i~~LP~~------~~L-~~Lr~L~Ls~c~~L~~LP~sfIg----~-L~~Lr~LdLs~c~I~ 896 (902)
..|++|+|++|.+...+.. ..+ ++|++|+|++| .+...+...++ . ..+|++|+|++|+|.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 6677777777766543321 233 67777777743 35555543232 3 257777777777665
No 246
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.80 E-value=0.25 Score=56.68 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=50.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcC------CCCCCcchh-h----
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLY------CEDSEADSD-V---- 544 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~------~~~~~~~~~-l---- 544 (902)
..++|+|.+|+|||||+..+....... .-+.++++.+++.. ...+++.++...-... ....+.... .
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 368999999999999999988765322 22445666666554 3555665554321000 011111111 0
Q ss_pred -HHHHHhhh---cCceeEEEEccchh
Q 047071 545 -AEKLFHFL---NGKKFLLLLDDVWE 566 (902)
Q Consensus 545 -~~~L~~~L---~~kr~LLVLDDV~d 566 (902)
.-.+.+++ +++++||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11222332 57899999999853
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.76 E-value=0.053 Score=55.15 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=55.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc---cCcHHHHHHHHHH---hcCcCCC-CC-------Ccch
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR---YWSVRKIQNDVLR---QLPLYCE-DS-------EADS 542 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~---~~~~~~ll~~Il~---~L~~~~~-~~-------~~~~ 542 (902)
..|-|++..|.||||+|-...-..- .+=-.++++...+ ......++..+.- ..+.... .. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566666677999999977654432 2222344443322 2334444444310 0000000 00 0111
Q ss_pred hhHHHHHhhhcCce-eEEEEccchhhh-----hhhhhcCCCCCCCCCcEEEEEcccCC
Q 047071 543 DVAEKLFHFLNGKK-FLLLLDDVWEQI-----NLQEVGIPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 543 ~l~~~L~~~L~~kr-~LLVLDDV~d~~-----~~~~L~~~l~~~~~GSkIIVTTR~~~ 594 (902)
......++.+.+.+ -|||||.+.... ..+.+...+........||+|+|+..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 22233444554444 499999985421 11222222222334567999999864
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.75 E-value=0.29 Score=53.08 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=46.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc--HHHHHHHHHHhcCcCC---CCCCcchhh-HHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS--VRKIQNDVLRQLPLYC---EDSEADSDV-AEKL 548 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~--~~~ll~~Il~~L~~~~---~~~~~~~~l-~~~L 548 (902)
...++.|+|++|+||||++..++...... -..+.++... .+. ..+-+..+++.++.+. ....+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999988765321 1223444322 222 1222334444443322 111122111 2234
Q ss_pred HhhhcCceeEEEEccc
Q 047071 549 FHFLNGKKFLLLLDDV 564 (902)
Q Consensus 549 ~~~L~~kr~LLVLDDV 564 (902)
...+....-++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4445555568888865
No 249
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.74 E-value=0.052 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998765
No 250
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.73 E-value=0.12 Score=57.85 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=52.9
Q ss_pred HHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhccccc-ccccEEEEeeccccC-cHHHHHHHHHHhcCcCC---CCCC
Q 047071 466 KILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTK-LIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC---EDSE 539 (902)
Q Consensus 466 ~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr-~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~---~~~~ 539 (902)
++++.+.. ..-..++|+|++|+|||||++.+.+..... ..+.++ ++-+++.. .+.++ .+.+.... ....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev~~~----~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEVTEM----QRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHHHHH----HTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHHHHH----HHHhCeEEEEeCCCC
Confidence 45555544 344689999999999999999887654221 233443 56566543 23333 33331110 1111
Q ss_pred cchhhH------HHHHhhh--cCceeEEEEccchhh
Q 047071 540 ADSDVA------EKLFHFL--NGKKFLLLLDDVWEQ 567 (902)
Q Consensus 540 ~~~~l~------~~L~~~L--~~kr~LLVLDDV~d~ 567 (902)
...... -.+-+++ .++.+||++||+...
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 111111 0111222 589999999999654
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.63 E-value=0.059 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEecCCCCChhhHHHHHhh
Q 047071 477 GKIGIHGISGIGKTTVLKALIS 498 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~ 498 (902)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.40 E-value=0.068 Score=52.84 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+++|+|+.|+|||||++.+...+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999997753
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.18 E-value=0.06 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|+|+|+.|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997754
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.17 E-value=0.067 Score=52.94 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998654
No 255
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.16 E-value=0.52 Score=54.07 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=45.4
Q ss_pred HHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHh
Q 047071 466 KILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQ 530 (902)
Q Consensus 466 ~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~ 530 (902)
+.++.|.. ..-..++|+|.+|+|||+|+..+.+... +.+-+.++++-+++.. .+.++++++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 35666644 3345789999999999999999887642 2334567777777654 567777887764
No 256
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.15 E-value=0.27 Score=53.41 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=36.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
.-.++.|.|.+|+||||||..++.....+. ..++|++.. -+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999876553222 567787655 3455566655543
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.12 E-value=0.49 Score=53.83 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
..+++|.|+|.+|+||||++..++....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999886663
No 258
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.03 E-value=0.082 Score=53.46 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 462 RTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 462 ~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+.+...+.....++|.|+|.+|+|||||+..+....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344445555544567899999999999999999988764
No 259
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=92.02 E-value=0.054 Score=59.51 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=48.1
Q ss_pred ccccc-ccEEEeccCCCcccCCCC--CC-----CCCccEEEeecCCCCceeChhhh----cCC-CCccEEEeeCCCCccC
Q 047071 832 LKEWE-QAKFIFLMDNELCTLPEK--PS-----CSELSVLFLQRNYQLKVIPMSFF----QFM-TSLKVLNLSKTRINCL 898 (902)
Q Consensus 832 l~~l~-~Lr~L~L~~~~i~~LP~~--~~-----L~~Lr~L~Ls~c~~L~~LP~sfI----g~L-~~Lr~LdLs~c~I~~L 898 (902)
+..+. +|++|+|++|.+...... .. +++|++|+|++|. +...+...+ ..+ ++|++|||++|+|...
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 44566 899999999988765322 33 3899999999554 665544323 344 8999999999988876
Q ss_pred CC
Q 047071 899 PN 900 (902)
Q Consensus 899 P~ 900 (902)
+.
T Consensus 125 ~~ 126 (362)
T 3goz_A 125 SS 126 (362)
T ss_dssp CH
T ss_pred HH
Confidence 63
No 260
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.01 E-value=0.026 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=19.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++.|+|+.|+||||++..++...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999996666544
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.00 E-value=0.078 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|+|+.|+||||+++.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998654
No 262
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.99 E-value=0.48 Score=51.88 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
....+++|+|+.|+||||++..++....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999987653
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.87 E-value=0.082 Score=53.12 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|+|+|+.|+|||||++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999997654
No 264
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.85 E-value=0.19 Score=58.33 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 456 VSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4689999998888877654 3678999999999999999988663
No 265
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.80 E-value=0.22 Score=46.88 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=34.0
Q ss_pred EEeccCCCcc--cCCCCCCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCC
Q 047071 840 FIFLMDNELC--TLPEKPSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 840 ~L~L~~~~i~--~LP~~~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
+++.++..+. .+|.. --.+|++|+|+ .+.|+.||..++..|.+|++|+|+++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLT-GNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECC-CCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555565 66642 11257777777 556777777766777777777777763
No 266
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.80 E-value=0.07 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997654
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.75 E-value=0.082 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997654
No 268
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.72 E-value=0.092 Score=52.75 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|.|+|+.|.|||||++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998765
No 269
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.65 E-value=0.083 Score=52.73 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999997654
No 270
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.63 E-value=0.1 Score=51.62 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|.|.|++|+||||+++.++...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998765
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.61 E-value=0.085 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.5
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998765
No 272
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.58 E-value=0.081 Score=57.40 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 455 FVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999888887653 367899999999999999998765
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.55 E-value=0.39 Score=54.13 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=35.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEEeeccccCcHHHHHHHHHHhcC
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIILVTVSRYWSVRKIQNDVLRQLP 532 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~WV~vs~~~~~~~ll~~Il~~L~ 532 (902)
-.++.|+|++|+|||||+..++-...... .-..++|++....+....+ ..+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 46999999999999999997753221111 2345788877665554443 33455444
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.47 E-value=0.1 Score=52.85 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 275
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.43 E-value=0.35 Score=53.35 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=31.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccc----cEEEEeeccccCc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIF----DVIILVTVSRYWS 519 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~F----d~i~WV~vs~~~~ 519 (902)
.-.++.|+|+.|+|||||+..++......... ..++|++....+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 44799999999999999999998654211111 2347887655443
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.38 E-value=0.094 Score=51.51 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.5
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|++|+||||+++.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999997754
No 277
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.35 E-value=0.063 Score=62.53 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=47.9
Q ss_pred ccccEEEeccCCCccc--CCCC-CCCCCccEEEeecCCCCce--eChhhhcCCCCccEEEeeCCCCc
Q 047071 835 WEQAKFIFLMDNELCT--LPEK-PSCSELSVLFLQRNYQLKV--IPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~--LP~~-~~L~~Lr~L~Ls~c~~L~~--LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
+++|++|+|++|.+.. +|.. ..|++|++|+|++|. +.. +|.- +..+++|++|+|++|+|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA-VTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH-HHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH-HHhcCccCeeECcCCcCC
Confidence 6789999999988754 4554 788999999999887 542 4443 788999999999999765
No 278
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.33 E-value=0.15 Score=56.12 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=35.6
Q ss_pred ccchHHHHHHHHHhhc-------------C--CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 457 SRSTERTVLKILQCIS-------------G--VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 457 ~VGRe~ele~L~~~L~-------------~--~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++|.+..++.|...+. . .....+.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5888888888887772 1 134578999999999999999998776
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.32 E-value=0.1 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999997643
No 280
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.31 E-value=0.1 Score=51.40 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999997654
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.28 E-value=0.087 Score=52.33 Aligned_cols=24 Identities=46% Similarity=0.526 Sum_probs=21.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998655
No 282
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.18 E-value=0.11 Score=54.40 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997654
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.14 E-value=0.79 Score=49.40 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=46.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeecccc-CcHHHHHHHHHHhcCcCC---CCCCcchhhHHHHHhh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRY-WSVRKIQNDVLRQLPLYC---EDSEADSDVAEKLFHF 551 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~-~~~~~ll~~Il~~L~~~~---~~~~~~~~l~~~L~~~ 551 (902)
..++.++|.+|+||||++..++.....+ -..+.++..... ....+.+..+....+.+. ....+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 6799999999999999999987665321 123445543322 223333344444433322 1112333333333334
Q ss_pred hc-CceeEEEEccc
Q 047071 552 LN-GKKFLLLLDDV 564 (902)
Q Consensus 552 L~-~kr~LLVLDDV 564 (902)
++ +.-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33337778864
No 284
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.07 E-value=0.44 Score=52.05 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHhhcC----CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 458 RSTERTVLKILQCISG----VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 458 VGRe~ele~L~~~L~~----~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|-...+..+...+.. ..+.+|+|.|+.|+|||||++.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444444443332 345699999999999999999987654
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.06 E-value=0.12 Score=51.62 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+++|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999997655
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.06 E-value=0.096 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999997755
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.05 E-value=0.094 Score=51.49 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.|+|++|+||||+++.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999997654
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.94 E-value=0.11 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.1
Q ss_pred eEEEEecCCCCChhhHHHHHhh
Q 047071 477 GKIGIHGISGIGKTTVLKALIS 498 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~ 498 (902)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 289
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.94 E-value=0.51 Score=54.36 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=45.6
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHh
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQ 530 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~ 530 (902)
.++.|.. ..-..++|.|.+|+|||+|+..+.+... +.+-+.++|+-+++.. ...++++++...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 4555543 3345789999999999999999887642 2344677888887765 577788888764
No 290
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.94 E-value=0.12 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997654
No 291
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=90.91 E-value=0.13 Score=54.92 Aligned_cols=58 Identities=21% Similarity=0.136 Sum_probs=33.2
Q ss_pred ccccccEEEeccCCCcccCCCCCCCC--CccEEEeecCCCCceeCh------hhhcCCCCccEEEe
Q 047071 833 KEWEQAKFIFLMDNELCTLPEKPSCS--ELSVLFLQRNYQLKVIPM------SFFQFMTSLKVLNL 890 (902)
Q Consensus 833 ~~l~~Lr~L~L~~~~i~~LP~~~~L~--~Lr~L~Ls~c~~L~~LP~------sfIg~L~~Lr~LdL 890 (902)
..+.+|+.|+|++|.+..+.+...+. +|++|+|+++.--..+|. ..+..+++|+.||=
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 35667777777777666654443333 777777775442223441 22566777777763
No 292
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.85 E-value=0.19 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997644
No 293
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.85 E-value=0.1 Score=57.95 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=62.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcC
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNG 554 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~ 554 (902)
.-.+++|+|+.|.|||||.+.+........ -..++.+ .++.... .... ..+-.+.....+.......+...|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~--ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTI--EDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEE--ESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEc--cCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhh
Confidence 345999999999999999998876542110 0112222 1211100 0000 00000000011223445578888899
Q ss_pred ceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCCcc
Q 047071 555 KKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVGAC 596 (902)
Q Consensus 555 kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~va 596 (902)
.+=+|++|.+.+.+.+..+... ...|..||+|+.....+
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 9999999999876665554322 12355688888765543
No 294
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.84 E-value=0.12 Score=52.11 Aligned_cols=26 Identities=38% Similarity=0.371 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 295
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.84 E-value=0.11 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999997755
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.72 E-value=0.13 Score=51.12 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
....+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999764
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=90.69 E-value=0.051 Score=61.20 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=34.3
Q ss_pred ccccEEEeccCCCccc-----CCCC-CCCCCccEEEeecCCCCce-----eChhhhcCCCCccEEEeeCCCCcc
Q 047071 835 WEQAKFIFLMDNELCT-----LPEK-PSCSELSVLFLQRNYQLKV-----IPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~-----LP~~-~~L~~Lr~L~Ls~c~~L~~-----LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
+.+|++|+|++|.+.. +|.. ..+++|++|+|++| .+.. ++..+..+.++|++|+|++|.|..
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 4566677777666554 4444 45666777777644 3432 222211223567777777776653
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.68 E-value=0.13 Score=51.34 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|.|.|+.|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997654
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.66 E-value=0.38 Score=54.58 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
...++.|+|++|+||||++..++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887663
No 300
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.61 E-value=0.42 Score=52.65 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=35.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
-.++.|.|.+|+||||||..++..... .=..++|++.. -+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 358999999999999999998876532 22356676653 3455666666544
No 301
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.61 E-value=0.12 Score=52.60 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=21.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997643
No 302
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.59 E-value=0.21 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+.++|++|+|||+||+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998766
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.51 E-value=0.12 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChhhHHHHHhh
Q 047071 477 GKIGIHGISGIGKTTVLKALIS 498 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~ 498 (902)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.51 E-value=0.13 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997654
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.51 E-value=0.11 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999997654
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.46 E-value=0.11 Score=52.36 Aligned_cols=24 Identities=46% Similarity=0.526 Sum_probs=20.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999997654
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.44 E-value=0.13 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=19.6
Q ss_pred ceEEEEecCCCCChhhHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALI 497 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy 497 (902)
-.+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999755
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.43 E-value=0.13 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.2
Q ss_pred eEEEEecCCCCChhhHHHHHhh
Q 047071 477 GKIGIHGISGIGKTTVLKALIS 498 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~ 498 (902)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 309
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.43 E-value=0.11 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997654
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.43 E-value=0.13 Score=49.83 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.41 E-value=0.11 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=18.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999997655
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.39 E-value=0.12 Score=54.23 Aligned_cols=24 Identities=21% Similarity=0.008 Sum_probs=21.4
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999997654
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.38 E-value=0.14 Score=51.42 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|+.|+||||||+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999997643
No 314
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.35 E-value=0.11 Score=52.26 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999997644
No 315
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.30 E-value=0.24 Score=54.87 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=30.6
Q ss_pred chHHHHHHHHHhh----cCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 459 STERTVLKILQCI----SGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 459 GRe~ele~L~~~L----~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+-+.-.+.+++.+ ..+....|.|+|+.|+||||+++.++...
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444555555554 23556679999999999999999988755
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.26 E-value=0.25 Score=53.10 Aligned_cols=27 Identities=19% Similarity=-0.001 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|+|+|+.|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999987655
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.20 E-value=0.13 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.219 Sum_probs=22.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997654
No 318
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.17 E-value=0.14 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|+.|+|||||++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999998543
No 319
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.15 E-value=0.12 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.2
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999997654
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.15 E-value=0.15 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999997644
No 321
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.08 E-value=0.14 Score=50.89 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.0
Q ss_pred EEEEecCCCCChhhHHHHHhhccc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.07 E-value=0.15 Score=50.12 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997654
No 323
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.07 E-value=0.16 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765
No 324
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.05 E-value=0.21 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.236 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999997654
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.99 E-value=0.16 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.9
Q ss_pred CceEEEEecCCCCChhhHHHHHhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999765
No 326
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.88 E-value=0.51 Score=57.72 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=55.6
Q ss_pred ccccchHHHHHHHHHhhcC-------------CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHH
Q 047071 455 FVSRSTERTVLKILQCISG-------------VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVR 521 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~-------------~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~ 521 (902)
..+.|.+..+++|.+.+.- ...+-|.++|++|.|||.||+.+++.. ...| +.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~f-----~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF-----ISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCEE-----EECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCce-----EEecc----c
Confidence 3457888888888776531 134567899999999999999998876 2222 22221 1
Q ss_pred HHHHHHHHhcCcCCCCCCcchhhHHHHHhhh-cCceeEEEEccchh
Q 047071 522 KIQNDVLRQLPLYCEDSEADSDVAEKLFHFL-NGKKFLLLLDDVWE 566 (902)
Q Consensus 522 ~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L-~~kr~LLVLDDV~d 566 (902)
+++..... ..+.....+.+.. +..+++|+||+++.
T Consensus 546 ----~l~s~~vG------ese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 ----ELLTMWFG------ESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ----HHHTTTCS------SCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ----hhhccccc------hHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 12221111 1233334444433 45789999999974
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.73 E-value=0.16 Score=49.92 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997754
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.72 E-value=0.17 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 329
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=89.72 E-value=0.078 Score=59.64 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=40.8
Q ss_pred ccEEEeccCCCcc-----cCCCC-CCCCCccEEEeecCCCCce-----eChhhhcCCCCccEEEeeCCCCcc
Q 047071 837 QAKFIFLMDNELC-----TLPEK-PSCSELSVLFLQRNYQLKV-----IPMSFFQFMTSLKVLNLSKTRINC 897 (902)
Q Consensus 837 ~Lr~L~L~~~~i~-----~LP~~-~~L~~Lr~L~Ls~c~~L~~-----LP~sfIg~L~~Lr~LdLs~c~I~~ 897 (902)
+|++|+|++|.+. .+|.. ..+++|++|+|++|. +.. +...+...+.+|++|+|++|+|..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 5888888888776 34554 778888888888554 432 222222346678888888887764
No 330
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.45 E-value=0.17 Score=51.17 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999997655
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.45 E-value=0.18 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.44 E-value=0.19 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 333
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.42 E-value=0.9 Score=50.91 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=33.7
Q ss_pred HHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhccccc-ccccEEEEeecccc
Q 047071 466 KILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTK-LIFDVIILVTVSRY 517 (902)
Q Consensus 466 ~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr-~~Fd~i~WV~vs~~ 517 (902)
++++.|.. ..-..++|+|.+|+|||+|+..+++..... ..+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 46666654 334578999999999999999988764321 23333 45555544
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.34 E-value=0.17 Score=52.27 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++|.|.|++|+||+|+|+.+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999997655
No 335
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.32 E-value=0.61 Score=50.18 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
...+++|+|.+|+||||++..++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987653
No 336
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.25 E-value=0.49 Score=62.98 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=55.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
..+.+.|+|++|+|||+||.++.... ...=..++|+++...++... ++.++... ......+.....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45789999999999999999987655 22334577888877766555 33443211 11223345555555
Q ss_pred hhhc-CceeEEEEccch
Q 047071 550 HFLN-GKKFLLLLDDVW 565 (902)
Q Consensus 550 ~~L~-~kr~LLVLDDV~ 565 (902)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 4443 567799999985
No 337
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.22 E-value=1.3 Score=51.44 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=21.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|.|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988655
No 338
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.17 E-value=0.45 Score=48.04 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=29.2
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccc----cccEEEEeecccc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKL----IFDVIILVTVSRY 517 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~----~Fd~i~WV~vs~~ 517 (902)
-.+++|+|+.|+|||||++.++....... .-...+|+.....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 46999999999999999999976332111 1245677765443
No 339
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.17 E-value=0.3 Score=50.86 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.....|.|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997544
No 340
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.16 E-value=0.19 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.15 E-value=0.18 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998654
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.10 E-value=0.19 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.09 E-value=0.19 Score=50.33 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999997654
No 344
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.05 E-value=0.16 Score=51.93 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999997654
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.90 E-value=0.2 Score=49.52 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997754
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.86 E-value=0.22 Score=54.19 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|+|+|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999999999999998654
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.85 E-value=0.22 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...|.|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999997765
No 348
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.82 E-value=0.19 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=22.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...|.|.|+.|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999997654
No 349
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.74 E-value=0.2 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.69 E-value=0.19 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 351
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.58 E-value=0.71 Score=53.29 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=55.7
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHH-HHHhhcccccccccE-EEEeeccccC-cHHHHHHHHHHhcCcCC------C
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVL-KALISYPKTKLIFDV-IILVTVSRYW-SVRKIQNDVLRQLPLYC------E 536 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd~-i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~ 536 (902)
.++.|.. ..-..++|+|.+|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+.+...=.... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 5555543 23357899999999999996 5777654 2343 4566666554 56677777765321111 1
Q ss_pred CCCcch-hh-----HHHHHhhh--cCceeEEEEccchh
Q 047071 537 DSEADS-DV-----AEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 537 ~~~~~~-~l-----~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
...... .. ...+-+++ +++.+||++||+..
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 111111 11 11222333 57999999999864
No 352
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.58 E-value=0.32 Score=55.35 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|.|+|.+|+||||++..++...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999987765
No 353
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.42 E-value=0.21 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALIS 498 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~ 498 (902)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999873
No 354
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.39 E-value=0.18 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=16.4
Q ss_pred ceEEEEecCCCCChhhHHHHHh-hcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALI-SYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy-~d~ 500 (902)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999997 543
No 355
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.36 E-value=0.23 Score=54.05 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++.+||+|.|=|||||||.+..+.--.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 477999999999999999887765443
No 356
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.34 E-value=0.3 Score=50.08 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 464 VLKILQCISG-VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 464 le~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+..+..++.. +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455555543 223479999999999999999988765
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.34 E-value=0.24 Score=50.35 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...|.|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999997654
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.30 E-value=0.22 Score=52.22 Aligned_cols=26 Identities=42% Similarity=0.400 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998654
No 359
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.22 E-value=0.23 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998755
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.21 E-value=0.12 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999997655
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.15 E-value=0.25 Score=49.02 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+++.|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998765
No 362
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.08 E-value=0.59 Score=53.33 Aligned_cols=98 Identities=10% Similarity=0.184 Sum_probs=57.2
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhccccccccc----EEEEeeccccC-cHHHHHHHHHHhc--CcCC---
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFD----VIILVTVSRYW-SVRKIQNDVLRQL--PLYC--- 535 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd----~i~WV~vs~~~-~~~~ll~~Il~~L--~~~~--- 535 (902)
.++.|.. ..-..++|.|..|+|||+|+.++++.... +.+ .++++-+++.. .+.++.+++...= ....
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 4555543 22245789999999999999999887643 223 56666666554 5667777765531 1110
Q ss_pred -CCCCcch-hh-----HHHHHhhhc---CceeEEEEccchh
Q 047071 536 -EDSEADS-DV-----AEKLFHFLN---GKKFLLLLDDVWE 566 (902)
Q Consensus 536 -~~~~~~~-~l-----~~~L~~~L~---~kr~LLVLDDV~d 566 (902)
....... .. .-.+-++++ ++.+||++||+..
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1111111 11 112334443 7899999999854
No 363
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.05 E-value=0.44 Score=52.55 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=28.1
Q ss_pred HHHHHHhhc--CCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 464 VLKILQCIS--GVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 464 le~L~~~L~--~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++++.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554 3567899999999999999999987554
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.04 E-value=0.22 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...|.|.|+.|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997655
No 365
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.01 E-value=0.94 Score=49.34 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhccc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
....+|+|+|++|+||||++..++....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999876653
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.99 E-value=0.29 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhh
Q 047071 476 AGKIGIHGISGIGKTTVLKALIS 498 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~ 498 (902)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.97 E-value=0.26 Score=49.73 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
.-.+|+|+|+.|+||||+++.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999764
No 368
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.89 E-value=1.5 Score=50.59 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=56.0
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHH-HHHhhcccccccccE-EEEeeccccC-cHHHHHHHHHHhcCcCC------C
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVL-KALISYPKTKLIFDV-IILVTVSRYW-SVRKIQNDVLRQLPLYC------E 536 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd~-i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~ 536 (902)
.++.|.. ..-..++|+|.+|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+.+...=.... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 5555543 23357899999999999995 5776654 2343 4666666554 56677777765322111 1
Q ss_pred CCCcchhh------HHHHHhhh--cCceeEEEEccchh
Q 047071 537 DSEADSDV------AEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 537 ~~~~~~~l------~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
........ .-.+-+++ .++.+||++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11111111 01222333 57999999999864
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.86 E-value=0.27 Score=48.19 Aligned_cols=25 Identities=44% Similarity=0.557 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|.|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999997754
No 370
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.86 E-value=0.27 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44699999999999999999998654
No 371
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=87.72 E-value=0.072 Score=62.02 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=37.7
Q ss_pred cccccEEEeccCC-Cccc--CCCC-CCCCCccEEEeecCCCCce-----eChhhhcCCCCccEEEeeCCC
Q 047071 834 EWEQAKFIFLMDN-ELCT--LPEK-PSCSELSVLFLQRNYQLKV-----IPMSFFQFMTSLKVLNLSKTR 894 (902)
Q Consensus 834 ~l~~Lr~L~L~~~-~i~~--LP~~-~~L~~Lr~L~Ls~c~~L~~-----LP~sfIg~L~~Lr~LdLs~c~ 894 (902)
.+++|+.|+|.+| .+.. ++.. ..|++|++|+|++|. +.. ++.- ...+++|++|+|++|.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~-~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF-PDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS-CTTCCCCCEEECTTCC
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH-hhcCCcCcEEEecccC
Confidence 4667788888777 4433 4444 467788888887665 322 3332 4466788888888775
No 372
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=87.66 E-value=0.1 Score=57.97 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=43.4
Q ss_pred cccccEEEeccCCCccc-----CCCCCCCCCccEEEeecCCCCce-----eChhhhcCCCCccEEEeeCCCCc
Q 047071 834 EWEQAKFIFLMDNELCT-----LPEKPSCSELSVLFLQRNYQLKV-----IPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 834 ~l~~Lr~L~L~~~~i~~-----LP~~~~L~~Lr~L~Ls~c~~L~~-----LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
.+++|++|+|.+|.+.. +.....+++|++|+|+ ++.+.. |+.. +.+|++|+.|+|++|.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs-~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS-AGVLTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC-SSCCBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC-CCCCChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 46788899998876542 2222467889999998 455554 5665 678889999999888654
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.58 E-value=0.27 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+++|+|++|+|||||+..++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998665
No 374
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.50 E-value=0.27 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.9
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999997654
No 375
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.43 E-value=0.28 Score=58.13 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 455 FVSRSTERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45699998888888777654 588999999999999999998765
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.33 E-value=0.29 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.1
Q ss_pred CceEEEEecCCCCChhhHHHHHh
Q 047071 475 EAGKIGIHGISGIGKTTVLKALI 497 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy 497 (902)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999997
No 377
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.31 E-value=3.6 Score=56.69 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=46.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhcCce
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLNGKK 556 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~~kr 556 (902)
+-+.++|++|.|||++|+.+.... ..+ ....++.+...+...++..+-..+.......... ..-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 467799999999999997776544 123 2345667776666666666555443211000000 000014678
Q ss_pred eEEEEccch
Q 047071 557 FLLLLDDVW 565 (902)
Q Consensus 557 ~LLVLDDV~ 565 (902)
.+|.+||+.
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 899999964
No 378
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.28 E-value=0.32 Score=49.13 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999997654
No 379
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.28 E-value=0.57 Score=45.81 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....|.|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998654
No 380
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=87.21 E-value=0.13 Score=59.91 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=43.1
Q ss_pred ccccEEEeccCCCccc--CCCC-CCCCCccEEEeecCCCCceeChhhhcCCCCccEEEeeCCCC
Q 047071 835 WEQAKFIFLMDNELCT--LPEK-PSCSELSVLFLQRNYQLKVIPMSFFQFMTSLKVLNLSKTRI 895 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~--LP~~-~~L~~Lr~L~Ls~c~~L~~LP~sfIg~L~~Lr~LdLs~c~I 895 (902)
+++|++|+|++|.+.. ++.. ..|++|++|+|++|..-...+..++.++++|++|+|++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6778899998887633 2222 45889999999977642223333366788999999999966
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.11 E-value=0.51 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999997654
No 382
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.10 E-value=0.34 Score=55.34 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHhhcC--------------CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 456 VSRSTERTVLKILQCISG--------------VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 456 ~~VGRe~ele~L~~~L~~--------------~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.+..++.|...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 357877777777655521 134568899999999999999998766
No 383
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.09 E-value=0.7 Score=52.75 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=57.2
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhccccc--------cccc-EEEEeeccccC-cHHHHHHHHHHhcCcCC
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTK--------LIFD-VIILVTVSRYW-SVRKIQNDVLRQLPLYC 535 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr--------~~Fd-~i~WV~vs~~~-~~~~ll~~Il~~L~~~~ 535 (902)
.++.|.. ..-..++|.|.+|+|||+|+.++++..... ++=+ .++++-+++.. .+.++.+++...=....
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 4555543 223467899999999999999998876431 1111 55666666554 56667776654311110
Q ss_pred -------CCCCcchhh-----HHHHHhhhc---CceeEEEEccchh
Q 047071 536 -------EDSEADSDV-----AEKLFHFLN---GKKFLLLLDDVWE 566 (902)
Q Consensus 536 -------~~~~~~~~l-----~~~L~~~L~---~kr~LLVLDDV~d 566 (902)
.+....... .-.+-++++ ++.+||++||+..
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111111111 112334443 6899999999854
No 384
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.08 E-value=0.35 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.0
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+-|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998654
No 385
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.85 E-value=0.28 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998765
No 386
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.84 E-value=0.46 Score=50.91 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR 516 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~ 516 (902)
...++|+|+|-||+||||+|..++.....+ =..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 467899999999999999998887655322 12345555443
No 387
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.75 E-value=0.27 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=19.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997643
No 388
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.54 E-value=0.96 Score=52.17 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=35.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
-.++.|.|.+|+||||||.+++.....+ +=..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 3588999999999999999988665322 123567776544 455666666543
No 389
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.51 E-value=0.33 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998654
No 390
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.42 E-value=0.32 Score=50.60 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
.-.+++|+|+.|.|||||.+.++.-.. ...+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEE
Confidence 346899999999999999999976552 23455555
No 391
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.40 E-value=0.37 Score=52.16 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 392
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.39 E-value=0.83 Score=52.31 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=58.7
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhccccccc--ccEEEEeeccccC-cHHHHHHHHHHhcCcCC------C
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLI--FDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------E 536 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~--Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~ 536 (902)
.++.|.. ..-..++|.|.+|+|||+|+..++++...... =+.++++-+++.. .+.++.+++...=.... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555543 22346788999999999999999887643221 1456666666554 56777777765421111 1
Q ss_pred CCCcchh------hHHHHHhhh---cCceeEEEEccchh
Q 047071 537 DSEADSD------VAEKLFHFL---NGKKFLLLLDDVWE 566 (902)
Q Consensus 537 ~~~~~~~------l~~~L~~~L---~~kr~LLVLDDV~d 566 (902)
....... ..-.+-+++ +++.+||++||+..
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 1111111 111223344 36899999999853
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.34 E-value=0.36 Score=47.90 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+++.|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999988654
No 394
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.34 E-value=0.33 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.069 Sum_probs=20.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhc
Q 047071 477 GKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 395
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.25 E-value=0.31 Score=47.72 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEEecCCCCChhhHHHHHhhc
Q 047071 478 KIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d 499 (902)
-|+|+|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 396
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=86.22 E-value=0.19 Score=55.97 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=45.9
Q ss_pred ccccccEEEeccCCCccc-----CCCC-CCCCCccEEEeecCCCCc-----eeChhhhcCCCCccEEEeeCCCCc
Q 047071 833 KEWEQAKFIFLMDNELCT-----LPEK-PSCSELSVLFLQRNYQLK-----VIPMSFFQFMTSLKVLNLSKTRIN 896 (902)
Q Consensus 833 ~~l~~Lr~L~L~~~~i~~-----LP~~-~~L~~Lr~L~Ls~c~~L~-----~LP~sfIg~L~~Lr~LdLs~c~I~ 896 (902)
.....|++|+|++|.+.. |+.. ..+.+|++|+|++| .+. .|+.. +...++|++|||++|.|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARA-AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHH-HHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHH-HHhCCCCCEEeccCCCCC
Confidence 456789999999998653 3333 55678999999955 454 34555 667789999999999875
No 397
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.18 E-value=0.59 Score=54.02 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 398
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.15 E-value=0.38 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhc
Q 047071 477 GKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 399
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.13 E-value=0.36 Score=50.37 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.. .+++|+|+.|.|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998654
No 400
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=86.11 E-value=0.15 Score=56.62 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=16.4
Q ss_pred ccccEEEeccCCCccc-----CCCC-CCCCCccEEEeec
Q 047071 835 WEQAKFIFLMDNELCT-----LPEK-PSCSELSVLFLQR 867 (902)
Q Consensus 835 l~~Lr~L~L~~~~i~~-----LP~~-~~L~~Lr~L~Ls~ 867 (902)
...|+.|+|++|.+.. ++.. ..+++|++|+|++
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 3456666666655432 2221 3345566666663
No 401
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.10 E-value=0.32 Score=50.11 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=25.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
-.+++|+|+.|.|||||.+.++.-.. ...+.+++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 63 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFL 63 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE
Confidence 35899999999999999999986542 23444544
No 402
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.10 E-value=0.43 Score=46.09 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=25.4
Q ss_pred HHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhc
Q 047071 466 KILQCISG-VEAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 466 ~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
++.+.+.. .....|.|+|.+|+|||||...+...
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34444444 45567889999999999999998743
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.05 E-value=0.32 Score=51.25 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+|.|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999997754
No 404
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.95 E-value=0.35 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 405
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.89 E-value=0.32 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
+|.|.|++|+||+|+|+.+++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997655
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.87 E-value=0.38 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhc
Q 047071 477 GKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999763
No 407
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.78 E-value=0.37 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.066 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999997755
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.78 E-value=0.38 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 409
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.69 E-value=1.1 Score=59.87 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=56.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-.++.|.|++|+||||||.+++.... ..-..++|++....++... ++.++... ....+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999999987653 2224678998877766542 44454322 12335555555555
Q ss_pred hhh-cCceeEEEEccchh
Q 047071 550 HFL-NGKKFLLLLDDVWE 566 (902)
Q Consensus 550 ~~L-~~kr~LLVLDDV~d 566 (902)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 444 34567999998853
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.68 E-value=0.36 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 411
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.55 E-value=1.1 Score=51.13 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=34.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVL 528 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il 528 (902)
.-.++.|.|.+|+||||||..++....... -..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 345899999999999999999887653221 12567776443 3445555544
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.43 E-value=0.44 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...|.|.|+.|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997664
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.42 E-value=0.65 Score=47.95 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhccc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
....|.|.|+.|+||||+++.+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988764
No 414
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.41 E-value=0.37 Score=50.93 Aligned_cols=35 Identities=34% Similarity=0.395 Sum_probs=26.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
.-.+++|+|+.|.|||||.+.++.-.. ...+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 346899999999999999999986552 23455554
No 415
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.40 E-value=0.38 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 416
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.38 E-value=0.44 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...++.+.|.||+|||||+..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999997554
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.38 E-value=0.38 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999997654
No 418
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.36 E-value=0.38 Score=50.02 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 419
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.34 E-value=0.22 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhhHHHHHhhccc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.|.+.|.||+||||+|..++....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 477899999999999988876653
No 420
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.33 E-value=0.44 Score=48.62 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=27.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSR 516 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~ 516 (902)
-.++.|.|++|+||||||.+++.... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 35899999999999999988765442 1123567776443
No 421
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=85.29 E-value=0.43 Score=47.65 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=21.4
Q ss_pred chHHHHHHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 459 STERTVLKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 459 GRe~ele~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|++...+.+.++......--|.|+|.+|+|||||+..+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 444445555555544455578899999999999999987644
No 422
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.28 E-value=0.22 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.1
Q ss_pred eEEEEecCCCCChhhHHHHHhhccc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.+++|+|..|+|||||++.+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999987653
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.21 E-value=0.38 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+++|+|+.|.|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999997543
No 424
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.21 E-value=1.4 Score=50.02 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=35.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQ 530 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~ 530 (902)
-.++.|.|.+|+||||||..++....... -..++|++... +..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHH
Confidence 35899999999999999999887653221 13467776543 455666666543
No 425
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=85.13 E-value=2 Score=49.50 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=54.8
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHH-HHHhhcccccccccEEEEeeccccC-cHHHHHHHHHHhcCcCC------CC
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVL-KALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDVLRQLPLYC------ED 537 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~ 537 (902)
.++.|.. ..-..++|.|..|+|||+|| ..+.+.. ... ..++++-+++.. .+.++.+.+...=.... ..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~--~~d-v~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ata 228 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR--DSG-IKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATA 228 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS--SSS-CEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECT
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc--cCC-ceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECC
Confidence 4555543 23357889999999999996 5666643 222 235677777654 46677777655321111 11
Q ss_pred CCcchhhH------HHHHhhh--cCceeEEEEccchh
Q 047071 538 SEADSDVA------EKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 538 ~~~~~~l~------~~L~~~L--~~kr~LLVLDDV~d 566 (902)
........ ..+-+++ +++.+||++||+..
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 229 SESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 11111100 1122222 58999999999864
No 426
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.11 E-value=0.44 Score=45.07 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999997653
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.10 E-value=1 Score=59.23 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=55.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHH
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLF 549 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~ 549 (902)
.-+++.|.|++|+||||||.+++.... ..-..++|++....++... ++.++... ....+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 446999999999999999999876652 2234688998887776532 44444322 12234555555555
Q ss_pred hhh-cCceeEEEEccch
Q 047071 550 HFL-NGKKFLLLLDDVW 565 (902)
Q Consensus 550 ~~L-~~kr~LLVLDDV~ 565 (902)
... ..+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
Confidence 444 3456699999875
No 428
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.02 E-value=0.41 Score=49.90 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=25.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEe
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILV 512 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV 512 (902)
-.+++|+|+.|.|||||.+.++.-.. ...+.+++
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 65 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIF 65 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 35899999999999999999986542 23444544
No 429
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.01 E-value=0.45 Score=46.22 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhc
Q 047071 477 GKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.97 E-value=0.43 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997654
No 431
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.96 E-value=0.41 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 432
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.94 E-value=0.57 Score=45.72 Aligned_cols=26 Identities=38% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999765
No 433
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.94 E-value=0.47 Score=53.61 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....+|.|+|++|+||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999997654
No 434
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.92 E-value=0.71 Score=44.99 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 465 LKILQCISGVEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 465 e~L~~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..+.+ +.......|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34555 334455678899999999999999998543
No 435
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.90 E-value=0.42 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468899999999999999987543
No 436
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.87 E-value=0.42 Score=50.74 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 437
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.69 E-value=0.44 Score=49.94 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCChhhHHHHHhhc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
-.+++|+|+.|.|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.67 E-value=0.45 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.6
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
++|.|+|+.|+||||||..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999997755
No 439
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.57 E-value=0.45 Score=49.59 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 440
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.53 E-value=0.44 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.52 E-value=0.5 Score=52.43 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+++|+|+.|+|||||+..++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998765
No 442
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.51 E-value=0.43 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44699999999999999999998655
No 443
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.44 E-value=1 Score=59.18 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=58.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCC-----CCCCcchhhHHHHHh
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYC-----EDSEADSDVAEKLFH 550 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~-----~~~~~~~~l~~~L~~ 550 (902)
-++|-|+|+.|+||||||.++.... +..=...+|+...+..++.- ++.++... ..+.+.++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~--~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 3789999999999999999987654 44456788998887777653 66665543 233344555666666
Q ss_pred hhc-CceeEEEEccch
Q 047071 551 FLN-GKKFLLLLDDVW 565 (902)
Q Consensus 551 ~L~-~kr~LLVLDDV~ 565 (902)
.++ +..-+||+|-|.
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 664 456699999874
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.42 E-value=0.45 Score=49.87 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998654
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.42 E-value=0.5 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999997654
No 446
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.42 E-value=0.49 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999997654
No 447
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.38 E-value=0.4 Score=49.22 Aligned_cols=25 Identities=44% Similarity=0.768 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998655
No 448
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=84.32 E-value=0.81 Score=50.48 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=34.2
Q ss_pred HhhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHH
Q 047071 469 QCISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVR 521 (902)
Q Consensus 469 ~~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~ 521 (902)
.++.+...+++.+.|-||+||||+|..++........=..++-++.....+..
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHH
T ss_pred HHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChH
Confidence 34445567899999999999999998887655210222345556555444333
No 449
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.28 E-value=0.46 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCChhhHHHHHhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 450
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.27 E-value=0.49 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998654
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.26 E-value=0.52 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999997654
No 452
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=84.17 E-value=2 Score=50.25 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=41.2
Q ss_pred HHHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccC-cHHHHHHHH
Q 047071 466 KILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYW-SVRKIQNDV 527 (902)
Q Consensus 466 ~L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~-~~~~ll~~I 527 (902)
++++.|.. ..-..++|.|..|+|||+|+.++.+.. +-+.++++-+++.. .+.++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 35666654 334588999999999999999998764 23567888777663 455565554
No 453
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=84.16 E-value=0.42 Score=56.64 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=34.5
Q ss_pred ccccchHHHHHHHHHhhcCCCce-----------EEEEecCCCCChhhHHHHHhhcc
Q 047071 455 FVSRSTERTVLKILQCISGVEAG-----------KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 455 ~~~VGRe~ele~L~~~L~~~~~~-----------VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|.+..+..+.-.|..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34689998777766555443211 48899999999999999997655
No 454
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.10 E-value=0.46 Score=50.08 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34599999999999999999998654
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.08 E-value=0.47 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 456
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.07 E-value=0.99 Score=45.47 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEecCCCCChhhHHHHHhhccc
Q 047071 478 KIGIHGISGIGKTTVLKALISYPK 501 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~~ 501 (902)
.|+|-|.-|+||||.++.+++..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 477889999999999999987764
No 457
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=84.06 E-value=2.3 Score=49.12 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=56.5
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHH-HHHhhcccc----ccccc-EEEEeeccccC-cHHHHHHHHHHhcCcCC---
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVL-KALISYPKT----KLIFD-VIILVTVSRYW-SVRKIQNDVLRQLPLYC--- 535 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA-~~vy~d~~v----r~~Fd-~i~WV~vs~~~-~~~~ll~~Il~~L~~~~--- 535 (902)
.++.|.. ..-..++|+|..|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+.+...=....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 5555543 23357889999999999995 566665521 01234 36677676654 56677777765321111
Q ss_pred ---CCCCcch-hh-----HHHHHhhh--cCceeEEEEccchh
Q 047071 536 ---EDSEADS-DV-----AEKLFHFL--NGKKFLLLLDDVWE 566 (902)
Q Consensus 536 ---~~~~~~~-~l-----~~~L~~~L--~~kr~LLVLDDV~d 566 (902)
....... .. .-.+-+++ .++.+||++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1111111 11 11122233 57999999999864
No 458
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=84.05 E-value=1.3 Score=51.06 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=49.5
Q ss_pred eEEEEecCCCCChhhHH-HHHhhccccccccc-EEEEeeccccC-cHHHHHHHHHHhcCcCC------CCCC-cch----
Q 047071 477 GKIGIHGISGIGKTTVL-KALISYPKTKLIFD-VIILVTVSRYW-SVRKIQNDVLRQLPLYC------EDSE-ADS---- 542 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA-~~vy~d~~vr~~Fd-~i~WV~vs~~~-~~~~ll~~Il~~L~~~~------~~~~-~~~---- 542 (902)
..++|+|.+|+|||+|| ..+.+.. . -+ .++++-+++.. .+.++.+.+...=.... .... ...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46789999999999995 5777765 2 34 34566666554 45666666654211111 1110 111
Q ss_pred -----hhHHHHHhhhcCceeEEEEccchh
Q 047071 543 -----DVAEKLFHFLNGKKFLLLLDDVWE 566 (902)
Q Consensus 543 -----~l~~~L~~~L~~kr~LLVLDDV~d 566 (902)
...+.++. .++.+||++||+..
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 12222332 58999999999854
No 459
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.05 E-value=0.45 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.++.|+|++|+|||||+..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999987543
No 460
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=83.97 E-value=0.63 Score=44.55 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999997643
No 461
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.93 E-value=0.48 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998755
No 462
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.89 E-value=0.53 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987654
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.81 E-value=0.51 Score=48.47 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.1
Q ss_pred CceEEEEecCCCCChhhHHHHHhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4469999999999999999999765
No 464
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.78 E-value=0.54 Score=44.18 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999987543
No 465
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=83.77 E-value=0.53 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 466
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=83.73 E-value=0.53 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 467
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.70 E-value=0.54 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|.+|+|||||...+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998654
No 468
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.66 E-value=0.53 Score=44.57 Aligned_cols=22 Identities=18% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhhHHHHHhhc
Q 047071 478 KIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d 499 (902)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999764
No 469
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.65 E-value=0.5 Score=50.03 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998643
No 470
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.59 E-value=0.97 Score=47.10 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=25.2
Q ss_pred ceEEEEecCCCCChhhHHHHHhhccccccccc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYPKTKLIFD 507 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd 507 (902)
...|.|.|+.|+||||+++.+.+... ...+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCC
Confidence 36899999999999999999987764 23455
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=83.55 E-value=0.51 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 472
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.53 E-value=0.55 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...-|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999987654
No 473
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=83.53 E-value=0.46 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhhHHHHHhhc
Q 047071 478 KIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d 499 (902)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 474
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.51 E-value=0.52 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.0
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 475
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=83.45 E-value=0.94 Score=49.67 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=33.5
Q ss_pred hhcCCCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHH
Q 047071 470 CISGVEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVR 521 (902)
Q Consensus 470 ~L~~~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~ 521 (902)
++.+...+++.+.|-||+||||+|..++.... ..-..++-++.....+..
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSCHHH
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCCCChh
Confidence 34445578888999999999999988876553 222345666655444433
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.40 E-value=0.62 Score=47.91 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999997643
No 477
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.37 E-value=0.51 Score=50.39 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 478
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.25 E-value=0.68 Score=46.34 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 479
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.23 E-value=0.58 Score=49.46 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=56.8
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHHhcCcCCCCCCcchhhHHHHHhhhc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLRQLPLYCEDSEADSDVAEKLFHFLN 553 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~~L~~~~~~~~~~~~l~~~L~~~L~ 553 (902)
..-.+++|+|+.|+|||||++.+...... .+...+++.- .+... +.... ..+..+..-..+...+...+.+.|.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g-~~i~~--~~~~~-~~~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIE-DPIEY--VFKHK-KSIVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEE-SSCCS--CCCCS-SSEEEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcC-Cccee--ecCCc-ceeeeHHHhCCCHHHHHHHHHHHHh
Confidence 34469999999999999999998765421 1122222211 11000 00000 0000000000011234556666776
Q ss_pred CceeEEEEccchhhhhhhhhcCCCCCCCCCcEEEEEcccCC
Q 047071 554 GKKFLLLLDDVWEQINLQEVGIPDPSSENVGKIVVASRTVG 594 (902)
Q Consensus 554 ~kr~LLVLDDV~d~~~~~~L~~~l~~~~~GSkIIVTTR~~~ 594 (902)
..+-+|++|...|.+....+... ...|.-|++||.+..
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 134 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSS
T ss_pred hCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcch
Confidence 77888999988655443332211 123556888887654
No 480
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.21 E-value=0.52 Score=50.19 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=27.3
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeec
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTV 514 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~v 514 (902)
.-.+++|.|++|+|||||+..++........ ..++|+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeC
Confidence 3459999999999999999998866532211 13555543
No 481
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.21 E-value=0.75 Score=45.67 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d 499 (902)
....|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3446889999999999999998753
No 482
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.15 E-value=0.59 Score=50.81 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999997654
No 483
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.02 E-value=0.64 Score=45.44 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.0
Q ss_pred CceEEEEecCCCCChhhHHHHHhhcc
Q 047071 475 EAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 475 ~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
....|.|+|.+|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999997653
No 484
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=82.96 E-value=0.55 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998643
No 485
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=82.94 E-value=0.57 Score=44.22 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEecCCCCChhhHHHHHhhcc
Q 047071 479 IGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 479 I~IvG~GGVGKTTLA~~vy~d~ 500 (902)
|.|+|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997543
No 486
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.83 E-value=0.58 Score=50.73 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCCChhhHHHHHhhcc
Q 047071 474 VEAGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 474 ~~~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345699999999999999999987654
No 487
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=82.82 E-value=2.2 Score=49.84 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=41.1
Q ss_pred HHHhhcC-CCceEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCc-HHHHHHHH
Q 047071 467 ILQCISG-VEAGKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWS-VRKIQNDV 527 (902)
Q Consensus 467 L~~~L~~-~~~~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~-~~~ll~~I 527 (902)
+++.|.. ..-..++|.|..|+|||+|+..+.+.. +-+.++++-+++..+ +.++++++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 5666644 334588999999999999999987753 235778888887654 55666664
No 488
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=82.80 E-value=0.62 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
.-|.|+|.+|+|||||...+.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999997543
No 489
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=82.79 E-value=0.56 Score=45.68 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
--|.|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998653
No 490
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=82.79 E-value=0.62 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.5
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
--|.|+|.+|+|||||+..+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 358899999999999999987643
No 491
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=82.78 E-value=0.63 Score=43.95 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhhHHHHHhhc
Q 047071 478 KIGIHGISGIGKTTVLKALISY 499 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d 499 (902)
-|.|+|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 492
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=82.78 E-value=0.57 Score=45.44 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.8
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 493
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=82.78 E-value=1.2 Score=45.69 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=32.9
Q ss_pred eEEEEecCCCCChhhHHHHHhhcccccccccEEEEeeccccCcHHHHHHHHHH
Q 047071 477 GKIGIHGISGIGKTTVLKALISYPKTKLIFDVIILVTVSRYWSVRKIQNDVLR 529 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~~vr~~Fd~i~WV~vs~~~~~~~ll~~Il~ 529 (902)
..|.|-|+.|+||||+++.+++... ...+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999987764 233423333322222234455555554
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.76 E-value=0.62 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
...|.|.|..|+||||+++.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998765
No 495
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=82.73 E-value=0.57 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..-|.|+|..|+|||||...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998653
No 496
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.63 E-value=0.6 Score=44.16 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEecCCCCChhhHHHHHhhcc
Q 047071 477 GKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 477 ~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358899999999999999997543
No 497
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=82.54 E-value=0.58 Score=44.78 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..-|.|+|.+|+|||||+..+.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999997643
No 498
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=82.51 E-value=0.65 Score=44.36 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
..-|.|+|.+|+|||||+..+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998654
No 499
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=82.49 E-value=0.56 Score=45.46 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhhHHHHHhhcc
Q 047071 478 KIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 478 VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999987653
No 500
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.46 E-value=0.7 Score=47.11 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCChhhHHHHHhhcc
Q 047071 476 AGKIGIHGISGIGKTTVLKALISYP 500 (902)
Q Consensus 476 ~~VI~IvG~GGVGKTTLA~~vy~d~ 500 (902)
-+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999997654
Done!