BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047072
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0C|A Chain A, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0F|X Chain X, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0F|A Chain A, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0D|X Chain X, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
pdb|3Q0D|A Chain A, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
Length = 167
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/164 (62%), Positives = 129/164 (78%), Gaps = 8/164 (4%)
Query: 142 KVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEG-KINATSIVASGGYDDKLD 200
++IG+VPGVEVGDEFQYR+ELN++G+H Q GIDY+K +G ++ ATSIV+SGGY+D LD
Sbjct: 1 QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLD 60
Query: 201 NSDVLIYTGQGGNV--MNGGKEPEDQKLERGNVALANNIHEQNPVRVIRGD-----TKAF 253
NSDVLIYTGQGGNV + P+DQ+L GN+AL N+I+++NPVRVIRG +
Sbjct: 61 NSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSV 120
Query: 254 EYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQPELSWK 297
+ +YDGLYLVE YW++ GSHGKLV+KFKL RIPGQPEL WK
Sbjct: 121 VAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWK 164
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna
Complex In Space Group P42212
Length = 167
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/164 (62%), Positives = 127/164 (77%), Gaps = 8/164 (4%)
Query: 142 KVIGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEG-KINATSIVASGGYDDKLD 200
++IG+VPGVEVGDEFQYR ELN++G+H Q GIDY K +G ++ ATSIV+SGGY+D LD
Sbjct: 1 QIIGTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDYXKDDGGELVATSIVSSGGYNDVLD 60
Query: 201 NSDVLIYTGQGGNV--MNGGKEPEDQKLERGNVALANNIHEQNPVRVIRGD-----TKAF 253
NSDVLIYTGQGGNV + P+DQ+L GN+AL N+I+++NPVRVIRG +
Sbjct: 61 NSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSV 120
Query: 254 EYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQPELSWK 297
+ +YDGLYLVE YW++ GSHGKLV+KFKL RIPGQPEL WK
Sbjct: 121 VAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWK 164
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 144/279 (51%), Gaps = 45/279 (16%)
Query: 304 DISQGKELIPICAVNTVDDEMPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 350
DI++G E IPI VN VD E PS +KY++ NI + +C + DC
Sbjct: 34 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCID----DC 89
Query: 351 TNG---CSKLEKCACVAKNGGEIP-YNHNRAIVQAKLLVYECGPSCKCPPSCYNRVSQQG 406
++ C +L K+G +P +N + L++EC +C C +C NRV Q G
Sbjct: 90 SSSNCMCGQLSMRCWYDKDGRLLPEFN-----MAEPPLIFECNHACSCWRNCRNRVVQNG 144
Query: 407 IKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYN 466
++ +L++Y+T GWGVRSL I PG+F+ E+VGEL+ + EA+ R D YLF++ N
Sbjct: 145 LRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--K 201
Query: 467 DGSLWGGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAA 526
DG ++ DA YGNV RF+NH C PNL V H+D R P F+
Sbjct: 202 DGEVY------CIDA-----RFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFST 250
Query: 527 ENISPLQELTYHYSYMIDQVYDSSGNIKKKSCFCGSSEC 565
I ++L + Y ++ +D G K SC CGS +C
Sbjct: 251 RLIEAGEQLGFDYG---ERFWDIKG--KLFSCRCGSPKC 284
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 143/277 (51%), Gaps = 41/277 (14%)
Query: 304 DISQGKELIPICAVNTVDDEMPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 350
DI++G E IPI VN VD E PS +KY++ NI + +C V C
Sbjct: 32 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYC--VCIDDCSS 89
Query: 351 TNG-CSKLEKCACVAKNGGEIP-YNHNRAIVQAKLLVYECGPSCKCPPSCYNRVSQQGIK 408
+N C +L K+G +P +N + L++EC +C C +C NRV Q G++
Sbjct: 90 SNCMCGQLSMRCWYDKDGRLLPEFN-----MAEPPLIFECNHACSCWRNCRNRVVQNGLR 144
Query: 409 VQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDG 468
+L++Y+T GWGVRSL I PG+F+ E+VGEL+ + EA+ R D YLF++ N DG
Sbjct: 145 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--KDG 201
Query: 469 SLWGGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAEN 528
++ DA YGNV RF+NH C PNL V H+D R P F+
Sbjct: 202 EVY------CIDA-----RFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRL 250
Query: 529 ISPLQELTYHYSYMIDQVYDSSGNIKKKSCFCGSSEC 565
I ++L + Y ++ +D G K SC CGS +C
Sbjct: 251 IEAGEQLGFDYG---ERFWDIKG--KLFSCRCGSPKC 282
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 143/278 (51%), Gaps = 43/278 (15%)
Query: 304 DISQGKELIPICAVNTVDDEMPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 350
DI++G E IPI VN VD E PS +KY++ NI + +C + DC
Sbjct: 8 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCID----DC 63
Query: 351 TNG---CSKLEKCACVAKNGGEIPYNHNRAIVQAKLLVYECGPSCKCPPSCYNRVSQQGI 407
++ C +L K+G +P N A L++EC +C C +C NRV Q G+
Sbjct: 64 SSSNCMCGQLSMRCWYDKDGRLLP-EFNMA---EPPLIFECNHACSCWRNCRNRVVQNGL 119
Query: 408 KVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYND 467
+ +L++Y+T GWGVRSL I PG+F+ E+VGEL+ + EA+ R D YLF++ N D
Sbjct: 120 RARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--KD 176
Query: 468 GSLWGGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAE 527
G ++ DA YGNV RF+NH C PNL V H+D R P F+
Sbjct: 177 GEVY------CIDA-----RFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTR 225
Query: 528 NISPLQELTYHYSYMIDQVYDSSGNIKKKSCFCGSSEC 565
I ++L + Y ++ +D G K SC CGS +C
Sbjct: 226 LIEAGEQLGFDYG---ERFWDIKG--KLFSCRCGSPKC 258
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 149/276 (53%), Gaps = 39/276 (14%)
Query: 304 DISQGKELIPICAVNTVDDE-MPPSFKYI-----TNIIYPDWCRPVPP-KGCDCTNGCSK 356
D+++G E +PI VN VD E P +KYI T+ + D R + + C C + CS
Sbjct: 15 DVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNID--RNITHLQHCTCVDDCSS 72
Query: 357 LEKCACVAKNGGEIPYNHNRAIVQA--KL---LVYECGPSCKCPPSCYNRVSQQGIKVQL 411
C C + Y+ + ++Q K+ L++EC +C C +C NRV Q GIKV+L
Sbjct: 73 -SNCLC-GQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRL 130
Query: 412 EIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDGSLW 471
++Y+T GWGVR+L +I G+FI E+VGEL+ + EA+ R +D YLF++ N DG ++
Sbjct: 131 QLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-EDDSYLFDLDN--KDGEVY 187
Query: 472 GGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISP 531
DA YGN+ RF+NH C PN+ V H+D R P F++ +I
Sbjct: 188 ------CIDAR-----YYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRT 236
Query: 532 LQELTYHYSYMIDQVYDSSGNIKKK--SCFCGSSEC 565
+EL + Y D+ +D IK K +C CGS +C
Sbjct: 237 GEELGFDYG---DRFWD----IKSKYFTCQCGSEKC 265
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 149/276 (53%), Gaps = 39/276 (14%)
Query: 304 DISQGKELIPICAVNTVDDE-MPPSFKYI-----TNIIYPDWCRPVPP-KGCDCTNGCSK 356
D+++G E +PI VN VD E P +KYI T+ + D R + + C C + CS
Sbjct: 13 DVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNID--RNITHLQHCTCVDDCSS 70
Query: 357 LEKCACVAKNGGEIPYNHNRAIVQA--KL---LVYECGPSCKCPPSCYNRVSQQGIKVQL 411
C C + Y+ + ++Q K+ L++EC +C C +C NRV Q GIKV+L
Sbjct: 71 -SNCLC-GQLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRL 128
Query: 412 EIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDGSLW 471
++Y+T GWGVR+L +I G+FI E+VGEL+ + EA+ R +D YLF++ N DG ++
Sbjct: 129 QLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-EDDSYLFDLDN--KDGEVY 185
Query: 472 GGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISP 531
DA YGN+ RF+NH C PN+ V H+D R P F++ +I
Sbjct: 186 ------CIDAR-----YYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRT 234
Query: 532 LQELTYHYSYMIDQVYDSSGNIKKK--SCFCGSSEC 565
+EL + Y D+ +D IK K +C CGS +C
Sbjct: 235 GEELGFDYG---DRFWD----IKSKYFTCQCGSEKC 263
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 142/277 (51%), Gaps = 41/277 (14%)
Query: 304 DISQGKELIPICAVNTVDDEMPPS-FKYIT------------NIIYPDWCRPVPPKGCDC 350
DI++G E IPI VN VD E PS +KY++ NI + +C V C
Sbjct: 33 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYC--VCIDDCSS 90
Query: 351 TNG-CSKLEKCACVAKNGGEIP-YNHNRAIVQAKLLVYECGPSCKCPPSCYNRVSQQGIK 408
+N C +L K+G +P +N + L++EC +C C +C NRV Q G++
Sbjct: 91 SNCMCGQLSMRCWYDKDGRLLPEFN-----MAEPPLIFECNHACSCWRNCRNRVVQNGLR 145
Query: 409 VQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDG 468
+L++Y+T GWGVRSL I PG+F+ E+VGEL+ + EA+ R D YLF++ N DG
Sbjct: 146 ARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-EEDSYLFDLDN--KDG 202
Query: 469 SLWGGLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAEN 528
++ DA YGNV RF+NH C PNL V H+D R P F+
Sbjct: 203 EVY------CIDA-----RFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRL 251
Query: 529 ISPLQELTYHYSYMIDQVYDSSGNIKKKSCFCGSSEC 565
I ++L + ++ +D G K SC CGS +C
Sbjct: 252 IEAGEQLGFDAG---ERFWDIKG--KLFSCRCGSPKC 283
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 132/277 (47%), Gaps = 50/277 (18%)
Query: 318 NTVDDEMPPS-FKYITNIIYPDWCRPVP--------PKGCDCTNGCSKLEKCACVAKNGG 368
NTVD E PPS F YI +P P GC CT+ +KC C A+ G
Sbjct: 48 NTVDLEGPPSDFYYINEY------KPAPGISLVNEATFGCSCTD--CFFQKC-CPAEAGV 98
Query: 369 EIPYNHNRAI-VQAKLLVYECGPSCKCPPSCYNRVSQQGIKVQLEIYKTE-ARGWGVRSL 426
+ YN N+ I + +YEC C+C P C NR+ Q+G + L I++T RGWGV++L
Sbjct: 99 LLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTL 158
Query: 427 NSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNY-NDGSLWGGLSNVMPDAPSSS 485
I SF+ E+VGE++ +EAERR G Y N G + + D +
Sbjct: 159 VKIKRMSFVMEYVGEVITSEEAERR----------GQFYDNKGITYLFDLDYESDEFTVD 208
Query: 486 CGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQ 545
YGNV FVNHSC PNL NV D+ D R+P LF+ I+ +ELT+ Y
Sbjct: 209 AARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQ----- 263
Query: 546 VYDSSGNIKKKS-------------CFCGSSECTGWL 569
SG+I S C CG+ C G+L
Sbjct: 264 -MKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 143/284 (50%), Gaps = 42/284 (14%)
Query: 314 ICAVNTVDDEMPPS--FKYITN------IIYPDWCRPVPPKGCDCTN--GC--SKLEKCA 361
+ VN VDDE PS F++I+ +I PD P GC+C++ GC + +C
Sbjct: 30 VTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPD---PNFQSGCNCSSLGGCDLNNPSRCE 86
Query: 362 CVAKNGGEIPYNHN---RAIVQAKLLVYECGPSCKCPPSCYNRVSQQGIKVQLEIYKTEA 418
C+ + ++ R ++YEC C C C NRV Q+G + LEI+KT+
Sbjct: 87 CLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKE 146
Query: 419 RGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSN-----DKYLFNIGNNYNDGSLWGG 473
+GWGVRSL G+FI ++GE++ EA +R N YLF++ ++
Sbjct: 147 KGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDL-------DMFDD 199
Query: 474 LSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQ 533
S DA + YG+V RF NHSCSPN+ + + +H + + FA ++I PL+
Sbjct: 200 ASEYTVDAQN-----YGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLE 254
Query: 534 ELTYHYSYMID----QVYDSSGN-IKK--KSCFCGSSECTGWLY 570
ELT+ Y+ D Q S N I K + C CGS+ C GWL+
Sbjct: 255 ELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 23/196 (11%)
Query: 385 VYECGPSCKCPPSCYNRVSQQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLE 444
V+EC C+C C NRV Q+G++ +++KT +GWG+R+L I G F+ E+ GE+L
Sbjct: 102 VFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLG 161
Query: 445 EKEAERRT-----SNDKYLFNIGNNYNDGSLWGGLSNVMPDAPSSSCGVYGNVGRFVNHS 499
E +RR S+ Y+ I + +G + + P+ GN+GRF+NHS
Sbjct: 162 FSEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVD-----PT----YIGNIGRFLNHS 212
Query: 500 CSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYS--YMIDQVYDSSGNIK--- 554
C PNL V D +P LFAA++I P +EL+Y YS Y+ V S +
Sbjct: 213 CEPNLLMIPVRI---DSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGK 269
Query: 555 -KKSCFCGSSECTGWL 569
+K C+CG+ CT +L
Sbjct: 270 LRKPCYCGAKSCTAFL 285
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 46/299 (15%)
Query: 312 IPICAVNTVDDE-MPPSFKYITNIIYPDWCRPVPPK----GCDCTNG-------CSKLEK 359
+PI VN DD + P+F++I + I PV + GC C + C L++
Sbjct: 10 LPISIVNREDDAFLNPNFRFIDHSIIGKNV-PVADQSFRVGCSCASDEECMYSTCQCLDE 68
Query: 360 CACVAKNGGEIPYNHNRA----------------IVQAKLLVYECGPSCKCPPSCYNRVS 403
A + + PY + ++Q++ +YEC C C C NRV
Sbjct: 69 MAPDSDEEAD-PYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVV 127
Query: 404 QQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTS-------NDK 456
++G V L+I++T+ RGWGV+ +I G F+ ++GE++ +EA+RR + D
Sbjct: 128 ERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDV 187
Query: 457 YLFNIGNNYNDGSLWGGLSNVMPDAPSSSCGVY-GNVGRFVNHSCSPNLYAQNVLYDHED 515
YLF + + ++D L ++ P G Y RF+NHSC PN+ + DH D
Sbjct: 188 YLFAL-DKFSDPD---SLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHAD 243
Query: 516 KRMPHKMLFAAENISPLQELTYHY----SYMIDQVYDSSGNIKKKSCFCGSSECTGWLY 570
K + LFA ++I ELT+ Y + + +D S + C CG+++C G+L+
Sbjct: 244 KHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYLW 302
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKD|B Chain B, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKE|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKF|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKG|A Chain A, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|B Chain B, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|C Chain C, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|D Chain D, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
Length = 210
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 144 IGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSD 203
G +PGV VG +++RV+++ G+H GI ++G A S+V +GGY+D +DN +
Sbjct: 20 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN 76
Query: 204 VLIYTGQGGNVMNGGK----EPEDQKLERGNVALANNIH--------------EQNPVRV 245
YTG GG ++G K + DQKL N ALA N H + PVRV
Sbjct: 77 YFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRV 136
Query: 246 IRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQPE 293
+R +K YDG+Y V +YW + G G LV+++ L R +PE
Sbjct: 137 VRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPE 189
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1
pdb|2ZO1|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 2
pdb|2ZO2|B Chain B, Mouse Np95 Sra Domain Non-Specific Dna Complex
pdb|3F8I|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3F8I|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3FDE|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
pdb|3FDE|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
Length = 212
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 144 IGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSD 203
G +PGV VG +++RV+++ G+H GI ++G A S+V +GGY+D +DN +
Sbjct: 7 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN 63
Query: 204 VLIYTGQGGNVMNGGK----EPEDQKLERGNVALANNIH--------------EQNPVRV 245
YTG GG ++G K + DQKL N ALA N H + PVRV
Sbjct: 64 YFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRV 123
Query: 246 IRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQPE 293
+R +K YDG+Y V +YW + G G LV+++ L R +PE
Sbjct: 124 VRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPE 176
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg,
Crystal Structure In Space Group C222(1)
Length = 212
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 144 IGSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSD 203
G +PGV VG +++RV+++ G+H GI ++G A S+V +GGY+D +DN +
Sbjct: 7 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN 63
Query: 204 VLIYTGQGGNVMNGGK----EPEDQKLERGNVALANNIH--------------EQNPVRV 245
YTG GG ++G K + DQKL N ALA N H + PVRV
Sbjct: 64 YFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRV 123
Query: 246 IRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQPE 293
+R +K YDG+Y V +YW + G G LV+++ L R +PE
Sbjct: 124 VRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPE 176
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 25/216 (11%)
Query: 355 SKLEKCACVAKNGGEIPYNHNRAIVQAKLLVYECGPS-CKCPPSCYNRVSQQGIKVQLEI 413
S++ +C C A + E P + + ++L+YEC P+ C C N+ + ++EI
Sbjct: 40 SEIPRCNCKATD--ENPCGIDSECIN-RMLLYECHPTVCPAGGRCQNQCFSKRQYPEVEI 96
Query: 414 YKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDGSLWGG 473
++T RGWG+R+ I G F+ E+VGEL++E+E R + +I N Y +
Sbjct: 97 FRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQE-HDITNFY----MLTL 151
Query: 474 LSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQ 533
+ + DA G GN RF+NH C PN Q + D R+ LFA +I
Sbjct: 152 DKDRIIDA-----GPKGNYARFMNHCCQPNCETQKWSVNG-DTRVG---LFALSDIKAGT 202
Query: 534 ELTYHYSYMIDQVYDSSGNIKKKSCFCGSSECTGWL 569
ELT++Y+ + GN K C CG+ C+G+L
Sbjct: 203 ELTFNYN------LECLGN-GKTVCKCGAPNCSGFL 231
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1
Protein
Length = 239
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 27/172 (15%)
Query: 145 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSDV 204
G +PG+ VG +++RV+++ G+H GI ++G A S+V +GGY+D +D+ +
Sbjct: 15 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 71
Query: 205 LIYTGQGGNVMNGGKEPE----DQKLERGNVALANN----IHEQ-----------NPVRV 245
YTG GG ++G K DQKL N ALA N I++Q PVRV
Sbjct: 72 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRV 131
Query: 246 IRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQP 292
+R ++K YDG+Y V +YW + G G LV+++ L R +P
Sbjct: 132 VRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 183
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf1
Length = 212
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 27/172 (15%)
Query: 145 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSDV 204
G +PG+ VG +++RV+++ G+H GI ++G A S+V +GGY+D +D+ +
Sbjct: 7 GPIPGIPVGTXWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 63
Query: 205 LIYTGQGGNVMNGGKEPE----DQKLERGNVALANN----IHEQ-----------NPVRV 245
YTG GG ++G K DQKL N ALA N I++Q PVRV
Sbjct: 64 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRV 123
Query: 246 IRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQP 292
+R ++K YDG+Y V +YW + G G LV+++ L R +P
Sbjct: 124 VRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 175
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|B Chain B, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|C Chain C, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|D Chain D, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
Length = 212
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 27/172 (15%)
Query: 145 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSDV 204
G +PG+ VG +++RV+++ G+H GI ++G A S+V +GGY+D +D+ +
Sbjct: 7 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 63
Query: 205 LIYTGQGGNVMNGGKEPE----DQKLERGNVALANN----IHEQ-----------NPVRV 245
YTG GG ++G K DQKL N ALA N I++Q PVRV
Sbjct: 64 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRV 123
Query: 246 IRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQP 292
+R ++K YDG+Y V +YW + G G LV+++ L R +P
Sbjct: 124 VRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 175
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain
Length = 208
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 27/172 (15%)
Query: 145 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSDV 204
G +PG+ VG +++RV+++ G+H GI ++G A S+V +GGY+D +D+ +
Sbjct: 10 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGNF 66
Query: 205 LIYTGQGGNVMNGGKEPE----DQKLERGNVALANN----IHEQ-----------NPVRV 245
YTG GG ++G K DQKL N ALA N I++Q PVRV
Sbjct: 67 FTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRV 126
Query: 246 IRG-----DTKAFEYRTCIYDGLYLVERYWQDVGSHGKLVYKFKLARIPGQP 292
+R ++K YDG+Y V +YW + G G LV+++ L R +P
Sbjct: 127 VRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP 178
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
pdb|3OLN|B Chain B, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
Length = 231
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 36/177 (20%)
Query: 145 GSVPGVEVGDEFQYRVELNMIGLHLQIQGGIDYVKHEGKINATSIVASGGYDDKLDNSDV 204
G +PG+ VG +++RV+++ G+H GGI ++G A S+V +GG+ D++D D
Sbjct: 31 GPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDG---AYSLVLAGGFADEVDRGDE 87
Query: 205 LIYTGQGGNVMNG----GKEPEDQKLERGNVALA---------------NNIHEQNPVRV 245
YTG GG + G G DQ L N ALA N PVRV
Sbjct: 88 FTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRV 147
Query: 246 IRGDTKAFEYRTCI---------YDGLYLVERYWQDV-GSHGKLVYKFKLARIPGQP 292
IR +F+ R YDG+Y V +YW ++ SHG LV+++ L R +P
Sbjct: 148 IR----SFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEP 200
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 21/188 (11%)
Query: 382 KLLVYECGPSCKCPPSCYNRVSQQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGE 441
+LL+ EC C C NR Q+ +E+ TE +GWG+R+ + +F+ E+ GE
Sbjct: 90 RLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGE 149
Query: 442 LLEEKEAERRTSNDKYLFNIGNNYNDGSLWGGLSNVMPDAPSSSCGVYGNVGRFVNHSCS 501
+L+ KE + R +Y N +Y +L ++ + DA GN RF+NHSC
Sbjct: 150 VLDHKEFKARVK--EYARNKNIHYYFMAL---KNDEIIDATQK-----GNCSRFMNHSCE 199
Query: 502 PNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQVYDSSGNIKKKSCFCG 561
PN Q + + + F + + ELT+ Y + Q Y + CFCG
Sbjct: 200 PNCETQKWTVNGQLR----VGFFTTKLVPSGSELTFDYQF---QRYGKEA----QKCFCG 248
Query: 562 SSECTGWL 569
S+ C G+L
Sbjct: 249 SANCRGYL 256
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 25/189 (13%)
Query: 382 KLLVYECGP-SCKCPPSCYNRVSQQGIKVQ-LEIYKTEARGWGVRSLNSIAPGSFIYEFV 439
+++ EC P +C C C N+ Q+ VQ LE ++ E +GWG+R+ + G FI E++
Sbjct: 45 RMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYL 104
Query: 440 GELLEEKEAERRTSNDKYLFNIGNNYNDGSLWGGLSNVMPDAPSSSCGVYGNVGRFVNHS 499
GE++ E+E R + +N++D S ++ D+ GN RF+NHS
Sbjct: 105 GEVVSEQEFRNR------MIEQYHNHSDHYCLNLDSGMVIDSYR-----MGNEARFINHS 153
Query: 500 CSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQVYDSSGNIKKKS-C 558
C PN Q + + L+A +++ ELTY Y++ S N++K+ C
Sbjct: 154 CDPNCEMQKWSVNG----VYRIGLYALKDMPAGTELTYDYNF-------HSFNVEKQQLC 202
Query: 559 FCGSSECTG 567
CG +C G
Sbjct: 203 KCGFEKCRG 211
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 413 IYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGNNYNDGSLWG 472
+Y++ G G+ +I G + E+ G ++ + ++R Y D G
Sbjct: 56 VYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREK-----------YYDSKGIG 104
Query: 473 GLSNVMPDAPSSSCGVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPL 532
+ D+ ++GN RF+NHSC PN Y++ + D + H ++FA I
Sbjct: 105 CYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQK----HIVIFAMRKIYRG 160
Query: 533 QELTYHYSYMIDQVYDSSGNIKKKSCFCGSSECTGWL 569
+ELTY Y + I+ D+S K C CG+ +C +L
Sbjct: 161 EELTYDYKFPIE---DASN---KLPCNCGAKKCRKFL 191
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 48/153 (31%)
Query: 404 QQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGN 463
++G+K+ L + +G GV + + G F+ E+ G+L+E +A++R +
Sbjct: 28 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 73
Query: 464 NYNDGSLWGGLSNVMPDAPSSSCGVY-----------------GNVGRFVNHSCSPNLYA 506
+ PS+ C +Y +GR +NHS S N
Sbjct: 74 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKSGN--C 118
Query: 507 QNVLYDHEDKRMPHKMLFAAENISPLQELTYHY 539
Q L+D + +PH +L A+ +I+ +EL Y Y
Sbjct: 119 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 149
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 48/153 (31%)
Query: 404 QQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGN 463
++G+K+ L + +G GV + + G F+ EF G+L+E +A++R +
Sbjct: 29 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREA---------- 74
Query: 464 NYNDGSLWGGLSNVMPDAPSSSCGVY-----------------GNVGRFVNHSCSPNLYA 506
+ PS+ C +Y +GR +NHS N
Sbjct: 75 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 119
Query: 507 QNVLYDHEDKRMPHKMLFAAENISPLQELTYHY 539
Q L+D + +PH +L A+ +I+ +EL Y Y
Sbjct: 120 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 150
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 48/153 (31%)
Query: 404 QQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGN 463
++G+K+ L + +G GV + + G F+ E+ G+L+E +A++R +
Sbjct: 30 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 75
Query: 464 NYNDGSLWGGLSNVMPDAPSSSCGVY-----------------GNVGRFVNHSCSPNLYA 506
+ PS+ C +Y +GR +NHS N
Sbjct: 76 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 120
Query: 507 QNVLYDHEDKRMPHKMLFAAENISPLQELTYHY 539
Q L+D + +PH +L A+ +I+ +EL Y Y
Sbjct: 121 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 48/153 (31%)
Query: 404 QQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGN 463
++G+K+ L + +G GV + + G F+ E+ G+L+E +A++R +
Sbjct: 24 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 69
Query: 464 NYNDGSLWGGLSNVMPDAPSSSCGVY-----------------GNVGRFVNHSCSPNLYA 506
+ PS+ C +Y +GR +NHS N
Sbjct: 70 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 114
Query: 507 QNVLYDHEDKRMPHKMLFAAENISPLQELTYHY 539
Q L+D + +PH +L A+ +I+ +EL Y Y
Sbjct: 115 QTKLHDIDG--VPHLILIASRDIAAGEELLYDY 145
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 48/153 (31%)
Query: 404 QQGIKVQLEIYKTEARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERRTSNDKYLFNIGN 463
++G+K+ L + +G GV + + G F+ E+ G+L+E +A++R +
Sbjct: 29 EEGMKIDL----IDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---------- 74
Query: 464 NYNDGSLWGGLSNVMPDAPSSSCGVY-----------------GNVGRFVNHSCSPNLYA 506
+ PS+ C +Y +GR +NHS N
Sbjct: 75 -------------LYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGN--C 119
Query: 507 QNVLYDHEDKRMPHKMLFAAENISPLQELTYHY 539
Q L+D + +PH +L A+ +I+ +EL + Y
Sbjct: 120 QTKLHDIDG--VPHLILIASRDIAAGEELLFDY 150
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 487 GVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQV 546
G+Y ++ +NHSC PN +++++ PH +L A +I +ELT Y M+
Sbjct: 196 GLYPSIS-LLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGEELTICYLDMLMTS 246
Query: 547 YDSSGNIKKKSCF-CGSSEC 565
+ ++ + CF C C
Sbjct: 247 EERRKQLRDQYCFECDCFRC 266
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 487 GVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQV 546
G+Y ++ +NHSC PN +++++ PH +L A +I +ELT Y M+
Sbjct: 197 GLYPSIS-LLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGEELTICYLDMLMTS 247
Query: 547 YDSSGNIKKKSCF-CGSSEC 565
+ ++ + CF C C
Sbjct: 248 EERRKQLRDQYCFECDCFRC 267
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 487 GVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQV 546
G+Y ++ +NHSC PN +++++ PH +L A +I +ELT Y M+
Sbjct: 198 GLYPSIS-LLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGEELTICYLDMLMTS 248
Query: 547 YDSSGNIKKKSCF-CGSSEC 565
+ ++ + CF C C
Sbjct: 249 EERRKQLRDQYCFECDCFRC 268
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 487 GVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQV 546
G+Y ++ +NHSC PN +++++ PH +L A +I +ELT Y M+
Sbjct: 196 GLYPSIS-LLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGEELTICYLDMLMTS 246
Query: 547 YDSSGNIKKKSCF-CGSSEC 565
+ ++ + CF C C
Sbjct: 247 EERRKQLRDQYCFECDCFRC 266
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 487 GVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQV 546
G+Y ++ +NHSC PN +++++ PH +L A +I +ELT Y M+
Sbjct: 232 GLYPSIS-LLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGEELTICYLDMLMTS 282
Query: 547 YDSSGNIKKKSCF-CGSSEC 565
+ ++ + CF C C
Sbjct: 283 EERRKQLRDQYCFECDCFRC 302
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 5 ERGLQTNYVSGTSQMERKKHNLLPPPKSASEEIIKAKSSE 44
E+ L++++V+G SQ +R +L PP ++ ++ ++A + +
Sbjct: 23 EQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDD 62
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 5 ERGLQTNYVSGTSQMERKKHNLLPPPKSASEEIIKAKSSE 44
E+ L++++V+G SQ +R +L PP ++ ++ ++A + +
Sbjct: 23 EQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDD 62
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 487 GVYGNVGRFVNHSCSPNLYAQNVLYDHEDKRMPHKMLFAAENISPLQELTYHYSYMIDQV 546
G+Y ++ +NHSC PN +++++ PH +L A +I +ELT Y +
Sbjct: 197 GLYPSIS-LLNHSCDPNC---SIVFNG-----PHLLLRAVRDIEVGEELTICYLDXLXTS 247
Query: 547 YDSSGNIKKKSCF-CGSSEC 565
+ ++ + CF C C
Sbjct: 248 EERRKQLRDQYCFECDCFRC 267
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 398 CYNRV--SQQGIKVQLEIYKTE----ARGWGVRSLNSIAPGSFIYEFVGELLEEKEAERR 451
YN + +Q+G +++ +T+ A W + S Y F E L EA+ R
Sbjct: 145 AYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEADWR 204
Query: 452 TSNDKYLFNIGNNYNDGSLWGGLSNVMPDA-PSSSCGVYGNVGRFV 496
F++ N G WGG V P+A P+ Y V R+V
Sbjct: 205 HWPFDQPFHLIMNIAVGGTWGGQQGVDPEAFPAQLVVDYVRVYRWV 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,508,243
Number of Sequences: 62578
Number of extensions: 821011
Number of successful extensions: 1871
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 52
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)