Query 047073
Match_columns 316
No_of_seqs 122 out of 1430
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 6.5E-32 1.4E-36 231.5 22.6 182 122-316 1-187 (230)
2 PF08268 FBA_3: F-box associat 99.6 6.9E-15 1.5E-19 114.3 11.2 86 225-315 1-89 (129)
3 PF07734 FBA_1: F-box associat 99.5 2.9E-13 6.3E-18 109.6 11.2 88 225-316 1-93 (164)
4 PLN03215 ascorbic acid mannose 99.4 2.8E-11 6.1E-16 108.3 19.7 258 37-315 2-303 (373)
5 PHA02713 hypothetical protein; 99.0 6.7E-08 1.5E-12 93.1 19.3 150 122-291 299-472 (557)
6 KOG4441 Proteins containing BT 98.9 3.1E-08 6.8E-13 95.3 15.9 172 121-313 327-506 (571)
7 PF12937 F-box-like: F-box-lik 98.9 4.6E-10 1E-14 70.7 1.7 43 39-81 1-43 (47)
8 PHA02713 hypothetical protein; 98.9 8.4E-08 1.8E-12 92.5 18.0 173 121-313 346-540 (557)
9 PHA02790 Kelch-like protein; P 98.8 2E-07 4.4E-12 88.4 16.7 142 122-291 314-455 (480)
10 KOG4441 Proteins containing BT 98.8 3.7E-07 8E-12 88.0 16.7 172 121-314 375-554 (571)
11 PF00646 F-box: F-box domain; 98.7 6.3E-09 1.4E-13 65.8 2.6 45 39-83 3-47 (48)
12 smart00256 FBOX A Receptor for 98.7 9.7E-09 2.1E-13 62.6 1.5 39 42-80 1-39 (41)
13 PHA03098 kelch-like protein; P 98.6 4.7E-06 1E-10 80.4 18.5 172 122-313 338-518 (534)
14 PHA03098 kelch-like protein; P 98.6 4.1E-06 9E-11 80.7 17.9 154 139-313 311-471 (534)
15 PHA02790 Kelch-like protein; P 98.6 2.8E-06 6.1E-11 80.6 16.1 143 125-290 270-415 (480)
16 TIGR03548 mutarot_permut cycli 98.5 6.4E-06 1.4E-10 74.2 17.2 152 122-291 119-312 (323)
17 TIGR03547 muta_rot_YjhT mutatr 98.5 1.8E-05 3.9E-10 71.9 19.2 175 124-313 15-234 (346)
18 PLN02153 epithiospecifier prot 98.5 2E-05 4.4E-10 71.5 18.5 178 123-313 82-291 (341)
19 PLN02153 epithiospecifier prot 98.4 2.4E-05 5.2E-10 71.0 17.2 139 139-290 50-201 (341)
20 TIGR03548 mutarot_permut cycli 98.4 6.5E-05 1.4E-09 67.7 19.2 142 138-291 87-232 (323)
21 PLN02193 nitrile-specifier pro 98.4 8.8E-05 1.9E-09 70.3 20.5 178 123-314 225-418 (470)
22 PRK14131 N-acetylneuraminic ac 98.3 9.5E-05 2.1E-09 68.1 19.3 177 123-314 35-256 (376)
23 PRK14131 N-acetylneuraminic ac 98.3 8E-05 1.7E-09 68.6 17.9 94 197-291 189-288 (376)
24 PLN02193 nitrile-specifier pro 98.3 9.3E-05 2E-09 70.1 18.5 160 139-314 193-359 (470)
25 TIGR03547 muta_rot_YjhT mutatr 98.2 7.8E-05 1.7E-09 67.8 15.3 136 139-291 168-330 (346)
26 KOG0281 Beta-TrCP (transducin 97.7 0.00026 5.6E-09 62.0 9.6 45 37-81 73-121 (499)
27 KOG2120 SCF ubiquitin ligase, 97.4 7.4E-05 1.6E-09 64.6 1.6 43 36-78 95-137 (419)
28 KOG4693 Uncharacterized conser 97.4 0.0017 3.6E-08 55.3 9.4 94 194-291 154-259 (392)
29 KOG0379 Kelch repeat-containin 96.8 0.14 3E-06 48.8 17.7 162 139-314 139-309 (482)
30 KOG2997 F-box protein FBX9 [Ge 96.4 0.0016 3.4E-08 56.7 1.5 47 39-85 107-158 (366)
31 KOG1230 Protein containing rep 96.1 0.15 3.2E-06 46.4 12.6 112 196-314 97-223 (521)
32 PF07893 DUF1668: Protein of u 96.1 0.37 8E-06 43.8 15.4 132 121-266 71-223 (342)
33 KOG4693 Uncharacterized conser 95.9 0.11 2.5E-06 44.4 10.3 141 138-291 156-311 (392)
34 KOG1230 Protein containing rep 95.6 0.51 1.1E-05 43.1 13.7 166 138-313 97-287 (521)
35 PF13964 Kelch_6: Kelch motif 95.6 0.03 6.5E-07 35.1 4.5 36 224-259 6-43 (50)
36 KOG0274 Cdc4 and related F-box 95.4 0.9 1.9E-05 43.8 15.8 233 35-302 104-359 (537)
37 KOG0379 Kelch repeat-containin 95.0 0.71 1.5E-05 44.0 13.9 160 140-312 89-255 (482)
38 PF01344 Kelch_1: Kelch motif; 94.7 0.093 2E-06 32.2 4.8 38 224-261 6-46 (47)
39 COG4257 Vgb Streptogramin lyas 94.6 0.55 1.2E-05 40.6 10.6 122 121-262 194-315 (353)
40 PF13964 Kelch_6: Kelch motif 94.1 0.13 2.8E-06 32.2 4.4 22 138-159 27-48 (50)
41 PF07762 DUF1618: Protein of u 93.8 0.45 9.7E-06 36.6 8.0 72 245-316 7-96 (131)
42 PF07646 Kelch_2: Kelch motif; 93.6 0.21 4.5E-06 31.1 4.8 37 225-261 7-47 (49)
43 smart00612 Kelch Kelch domain. 91.1 0.4 8.8E-06 28.9 3.8 25 195-219 13-37 (47)
44 PF13418 Kelch_4: Galactose ox 90.8 0.48 1.1E-05 29.3 3.9 35 225-259 7-44 (49)
45 PF01344 Kelch_1: Kelch motif; 89.7 0.36 7.9E-06 29.5 2.6 23 194-216 25-47 (47)
46 COG3055 Uncharacterized protei 87.5 2.3 5.1E-05 38.1 7.0 110 196-313 112-262 (381)
47 PF13418 Kelch_4: Galactose ox 87.1 0.8 1.7E-05 28.3 3.0 22 195-216 27-48 (49)
48 smart00612 Kelch Kelch domain. 86.5 2.6 5.7E-05 25.1 5.1 17 243-259 14-30 (47)
49 PLN02772 guanylate kinase 86.2 5.3 0.00012 36.8 8.8 75 223-303 28-107 (398)
50 PF07646 Kelch_2: Kelch motif; 85.2 1.7 3.7E-05 26.9 3.8 23 194-216 27-49 (49)
51 KOG4152 Host cell transcriptio 85.2 6.2 0.00013 37.3 8.7 67 138-213 56-124 (830)
52 PF13415 Kelch_3: Galactose ox 83.6 1.7 3.7E-05 26.9 3.3 25 194-218 16-40 (49)
53 COG3055 Uncharacterized protei 81.8 22 0.00047 32.2 10.4 93 195-289 194-292 (381)
54 PF02191 OLF: Olfactomedin-lik 81.0 19 0.0004 31.2 9.7 76 223-303 72-155 (250)
55 PF13415 Kelch_3: Galactose ox 79.1 4 8.8E-05 25.1 3.8 22 138-159 18-39 (49)
56 PF07893 DUF1668: Protein of u 79.1 50 0.0011 30.0 13.3 84 198-291 200-297 (342)
57 KOG4341 F-box protein containi 76.5 1.2 2.7E-05 40.8 1.2 37 40-76 73-109 (483)
58 cd01206 Homer Homer type EVH1 74.8 10 0.00022 28.0 5.3 41 138-184 10-51 (111)
59 smart00284 OLF Olfactomedin-li 73.1 34 0.00075 29.6 9.0 76 223-303 77-160 (255)
60 PF08450 SGL: SMP-30/Gluconola 72.1 60 0.0013 27.5 12.5 121 121-262 91-223 (246)
61 PF10282 Lactonase: Lactonase, 70.6 82 0.0018 28.4 15.6 100 195-303 212-323 (345)
62 KOG2055 WD40 repeat protein [G 69.2 1E+02 0.0022 29.0 13.9 146 128-303 272-418 (514)
63 PF06433 Me-amine-dh_H: Methyl 68.9 91 0.002 28.3 11.3 140 139-292 17-166 (342)
64 PF13360 PQQ_2: PQQ-like domai 68.4 68 0.0015 26.6 14.2 151 123-311 73-237 (238)
65 PF13570 PQQ_3: PQQ-like domai 67.9 9.9 0.00022 22.2 3.4 26 223-253 15-40 (40)
66 cd01207 Ena-Vasp Enabled-VASP- 67.2 20 0.00044 26.7 5.5 44 138-184 8-51 (111)
67 PF13013 F-box-like_2: F-box-l 66.6 3.2 7E-05 30.8 1.2 30 38-67 21-50 (109)
68 KOG3926 F-box proteins [Amino 66.1 5.1 0.00011 34.6 2.5 47 35-81 198-245 (332)
69 PF08450 SGL: SMP-30/Gluconola 63.4 92 0.002 26.3 15.4 115 122-259 7-129 (246)
70 PF13360 PQQ_2: PQQ-like domai 63.0 88 0.0019 26.0 9.9 105 125-255 35-143 (238)
71 KOG4152 Host cell transcriptio 62.6 1.5E+02 0.0032 28.5 12.8 126 172-303 210-362 (830)
72 PF07250 Glyoxal_oxid_N: Glyox 61.6 48 0.001 28.5 7.6 98 196-300 45-146 (243)
73 PRK11138 outer membrane biogen 59.5 1.4E+02 0.0031 27.3 15.2 30 223-257 250-281 (394)
74 KOG0316 Conserved WD40 repeat- 58.5 1.2E+02 0.0026 26.1 11.9 111 123-261 25-140 (307)
75 KOG2321 WD40 repeat protein [G 57.8 1.9E+02 0.0041 28.2 14.2 163 120-310 181-351 (703)
76 KOG2437 Muskelin [Signal trans 55.9 24 0.00051 33.5 5.0 114 142-261 232-363 (723)
77 PF13859 BNR_3: BNR repeat-lik 52.9 70 0.0015 28.7 7.5 81 223-312 124-211 (310)
78 smart00564 PQQ beta-propeller 51.1 34 0.00074 18.5 3.6 24 226-254 3-26 (33)
79 PF14339 DUF4394: Domain of un 49.0 69 0.0015 27.4 6.4 55 124-182 36-92 (236)
80 COG1520 FOG: WD40-like repeat 48.2 1.6E+02 0.0035 26.8 9.5 73 225-313 64-138 (370)
81 COG3386 Gluconolactonase [Carb 48.0 2E+02 0.0044 25.6 12.7 35 225-262 219-253 (307)
82 TIGR03300 assembly_YfgL outer 47.6 2.2E+02 0.0047 25.8 15.3 54 197-261 251-308 (377)
83 PRK11138 outer membrane biogen 46.2 2.4E+02 0.0052 25.9 16.5 106 126-257 120-230 (394)
84 PF03088 Str_synth: Strictosid 43.3 1E+02 0.0022 21.9 5.7 49 243-300 36-86 (89)
85 PTZ00334 trans-sialidase; Prov 43.2 1.8E+02 0.0039 29.7 9.2 81 223-312 263-348 (780)
86 PRK11028 6-phosphogluconolacto 42.8 2.4E+02 0.0052 24.9 14.1 96 197-303 57-157 (330)
87 cd00260 Sialidase Sialidases o 42.7 2.5E+02 0.0054 25.1 11.6 84 224-314 150-239 (351)
88 PF15408 PH_7: Pleckstrin homo 42.4 9.2 0.0002 26.8 0.2 25 56-80 76-100 (104)
89 KOG2502 Tub family proteins [G 41.7 19 0.00042 32.3 2.1 39 37-75 43-89 (355)
90 PF12768 Rax2: Cortical protei 39.2 1E+02 0.0022 27.2 6.3 75 180-260 1-80 (281)
91 KOG1310 WD40 repeat protein [G 38.3 2.8E+02 0.0061 27.0 9.1 67 124-205 59-125 (758)
92 PLN02919 haloacid dehalogenase 37.5 5.4E+02 0.012 27.5 18.5 161 125-303 693-889 (1057)
93 PRK11028 6-phosphogluconolacto 36.5 3E+02 0.0066 24.3 10.9 95 196-303 11-111 (330)
94 TIGR03866 PQQ_ABC_repeats PQQ- 35.9 2.7E+02 0.0059 23.5 16.9 96 138-256 52-149 (300)
95 PF05096 Glu_cyclase_2: Glutam 35.8 3E+02 0.0065 24.0 9.6 103 126-253 55-158 (264)
96 PF15232 DUF4585: Domain of un 35.6 1.1E+02 0.0023 21.0 4.4 16 168-183 31-46 (75)
97 PF11768 DUF3312: Protein of u 34.7 4.4E+02 0.0095 25.6 11.2 81 175-261 216-298 (545)
98 TIGR03032 conserved hypothetic 33.2 1.7E+02 0.0036 26.4 6.5 53 224-291 207-260 (335)
99 cd00837 EVH1 EVH1 (Enabled, Va 33.0 1.6E+02 0.0035 21.4 5.7 42 138-185 8-49 (104)
100 PF00568 WH1: WH1 domain; Int 31.8 1.6E+02 0.0035 21.7 5.5 40 138-184 15-55 (111)
101 PLN02772 guanylate kinase 31.6 2.1E+02 0.0046 26.6 7.2 45 195-239 49-96 (398)
102 PF08268 FBA_3: F-box associat 30.8 2.3E+02 0.005 21.2 9.1 94 195-288 18-118 (129)
103 smart00135 LY Low-density lipo 30.7 88 0.0019 17.7 3.3 23 228-254 19-41 (43)
104 TIGR03300 assembly_YfgL outer 30.4 4.1E+02 0.0089 24.0 17.2 107 125-257 104-215 (377)
105 TIGR03075 PQQ_enz_alc_DH PQQ-d 29.7 3.4E+02 0.0075 26.3 8.8 32 223-259 63-96 (527)
106 KOG0310 Conserved WD40 repeat- 29.6 2.8E+02 0.0062 26.2 7.6 108 166-302 29-141 (487)
107 KOG0289 mRNA splicing factor [ 29.4 4.9E+02 0.011 24.5 11.2 100 120-237 394-493 (506)
108 PF09372 PRANC: PRANC domain; 28.9 32 0.00069 24.7 1.3 24 37-60 70-93 (97)
109 KOG0640 mRNA cleavage stimulat 28.9 4.3E+02 0.0094 23.8 9.4 97 194-302 235-335 (430)
110 TIGR03075 PQQ_enz_alc_DH PQQ-d 28.2 5.6E+02 0.012 24.8 12.3 119 126-262 69-201 (527)
111 KOG2139 WD40 repeat protein [G 28.1 2.5E+02 0.0054 25.8 6.8 51 243-303 217-269 (445)
112 PF07370 DUF1489: Protein of u 27.4 36 0.00077 26.3 1.3 26 226-251 44-69 (137)
113 KOG0293 WD40 repeat-containing 27.0 5.3E+02 0.012 24.2 11.6 80 207-304 347-427 (519)
114 KOG3545 Olfactomedin and relat 26.1 2.9E+02 0.0063 23.8 6.6 89 208-302 57-153 (249)
115 PRK04792 tolB translocation pr 25.3 5.8E+02 0.013 24.0 18.6 137 138-302 241-380 (448)
116 COG4257 Vgb Streptogramin lyas 25.1 4.9E+02 0.011 23.1 11.2 107 139-265 124-230 (353)
117 PF07861 WND: WisP family N-Te 25.1 92 0.002 25.5 3.3 33 117-152 31-63 (263)
118 PF01011 PQQ: PQQ enzyme repea 24.8 89 0.0019 17.8 2.5 16 243-258 9-26 (38)
119 PF08683 CAMSAP_CKK: Microtubu 24.4 2.3E+02 0.0049 21.6 5.1 57 125-181 48-106 (123)
120 TIGR02658 TTQ_MADH_Hv methylam 22.5 6E+02 0.013 23.2 8.7 101 197-301 27-135 (352)
121 TIGR02658 TTQ_MADH_Hv methylam 22.3 6.1E+02 0.013 23.2 15.1 139 139-290 27-174 (352)
122 PF09826 Beta_propel: Beta pro 21.5 5.7E+02 0.012 24.8 8.5 77 166-253 436-519 (521)
123 COG3386 Gluconolactonase [Carb 21.4 5.4E+02 0.012 23.0 7.8 37 225-266 30-68 (307)
124 KOG0294 WD40 repeat-containing 20.1 6.5E+02 0.014 22.7 13.3 132 138-303 148-282 (362)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=6.5e-32 Score=231.49 Aligned_cols=182 Identities=26% Similarity=0.469 Sum_probs=139.9
Q ss_pred eeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCcc--CceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073 122 LSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVA--TRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV 199 (316)
Q Consensus 122 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~--~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~ 199 (316)
+++||||||+.. ...++||||+||+++.||+++..... ....++|||+.+++||||++.....+ .....+
T Consensus 1 ~~sCnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~ 72 (230)
T TIGR01640 1 VVPCDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEH 72 (230)
T ss_pred CcccceEEEEec----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccE
Confidence 478999999987 47899999999999999987541111 12589999999999999999764321 245789
Q ss_pred EEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCc-cEEEEEeCCCceee-EecCCCCccccCCCCccceE
Q 047073 200 EVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRT-AFMCSFDLGDEQFR-QFPGPPTREYEKCRPINSIS 277 (316)
Q Consensus 200 ~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~i~~fD~~~~~~~-~i~lPP~~~~~~~~~~~~~~ 277 (316)
+||++++++||.+...+........+|++||++||+.....+.. ..|++||+++|+|+ .+++|+... ... ....
T Consensus 73 ~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~-~~~---~~~~ 148 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS-DSV---DYLS 148 (230)
T ss_pred EEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc-ccc---cceE
Confidence 99999999999987433322222339999999999997653222 38999999999999 589954332 211 4568
Q ss_pred EEEECCeEEEEEccC-CCeEEEEEEeeCCCCCCeeeEEEC
Q 047073 278 VGVSGGFLYLCDGFL-EPNLDIWIMKKYGVKESWTKEFVI 316 (316)
Q Consensus 278 L~~~~G~L~lv~~~~-~~~~~vW~l~~~~~~~~W~~~~~i 316 (316)
|++++|+||++.... ..+++||+|+|++.. .|+|+++|
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~~~i 187 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKLFTV 187 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEEEEE
Confidence 999999999998864 367999999988754 49999886
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.61 E-value=6.9e-15 Score=114.32 Aligned_cols=86 Identities=29% Similarity=0.480 Sum_probs=69.3
Q ss_pred ceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCC---eEEEEEE
Q 047073 225 GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEP---NLDIWIM 301 (316)
Q Consensus 225 ~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~---~~~vW~l 301 (316)
|+++||.+||++.........|++||+.+|+|+.|++|...... .....|.+++|+|+++...... .++||+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~----~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSS----DCSSTLIEYKGKLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccc----cCccEEEEeCCeEEEEEecCCCCcceEEEEEe
Confidence 58999999999998333377999999999999999995121222 1778999999999999887544 5999999
Q ss_pred eeCCCCCCeeeEEE
Q 047073 302 KKYGVKESWTKEFV 315 (316)
Q Consensus 302 ~~~~~~~~W~~~~~ 315 (316)
+|++ +++|+|++.
T Consensus 77 eD~~-k~~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYE-KQEWSKKHI 89 (129)
T ss_pred eccc-cceEEEEEE
Confidence 9887 567999865
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.49 E-value=2.9e-13 Score=109.64 Aligned_cols=88 Identities=43% Similarity=0.788 Sum_probs=67.9
Q ss_pred ceeeCCeEEEEEecCCCC-ccEEEEEeCCCcee-eEecCCCCccccCCCCccceEEEE-ECCeEEEEEccC-CCeEEEEE
Q 047073 225 GAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQF-RQFPGPPTREYEKCRPINSISVGV-SGGFLYLCDGFL-EPNLDIWI 300 (316)
Q Consensus 225 ~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~-~~i~lPP~~~~~~~~~~~~~~L~~-~~G~L~lv~~~~-~~~~~vW~ 300 (316)
+|++||++||++...... ...|++||+.+|+| ..+++|+...... ....|++ .+|+||++.... ...++||+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~----~~~~L~~v~~~~L~~~~~~~~~~~~~IWv 76 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDD----DSVSLSVVRGDCLCVLYQCDETSKIEIWV 76 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccC----CEEEEEEecCCEEEEEEeccCCccEEEEE
Confidence 589999999999986543 22899999999999 8889955444122 5667754 478999997542 45799999
Q ss_pred EeeCC-CCCCeeeEEEC
Q 047073 301 MKKYG-VKESWTKEFVI 316 (316)
Q Consensus 301 l~~~~-~~~~W~~~~~i 316 (316)
|++++ ..++|+|.++|
T Consensus 77 m~~~~~~~~SWtK~~~i 93 (164)
T PF07734_consen 77 MKKYGYGKESWTKLFTI 93 (164)
T ss_pred EeeeccCcceEEEEEEE
Confidence 99765 37799999986
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.42 E-value=2.8e-11 Score=108.34 Aligned_cols=258 Identities=9% Similarity=0.078 Sum_probs=131.2
Q ss_pred CCCCCCCHHHHHHHHhcCC-ccccccccccchhhhhhcCCHHHHHHHHhcCCCCcE-EEecc-C-CccccCC-Cccceec
Q 047073 37 VSMEDLPLPILVDVFSRLP-IKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIM-ILEKF-C-KRIYTNS-LVPLFTL 111 (316)
Q Consensus 37 ~~~~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~sli~s~~F~~~~~~~~~~~~~-~~~~~-~-~~~~~~~-~~~~~~~ 111 (316)
+.|++||+|||..|..||| ..++.|+|+||++||+.+....- . ...+..++ ++... + ..+-... .......
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK---K-NPFRTRPLILFNPINPSETLTDDRSYISRPGA 77 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc---c-CCcccccccccCcccCCCCccccccccccccc
Confidence 3588999999999999998 66899999999999998874210 0 00001111 11110 0 0000000 0000000
Q ss_pred CCCCCCCcee---eeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCC--ccC----ceEEE-EEeCCC---CCe
Q 047073 112 NQGDKERLSL---LSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKN--VAT----RIRGF-GYNHCT---NQY 178 (316)
Q Consensus 112 ~~~~~~~~~~---~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~--~~~----~~~~~-~~d~~~---~~~ 178 (316)
......-+.+ -++.+|+|.-.+.+...+.+.+.||+++....+|+....- +.. ..+.+ +.+... -.|
T Consensus 78 ~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~~~~~~ 157 (373)
T PLN03215 78 FLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRETRPGY 157 (373)
T ss_pred eeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccccccccce
Confidence 0000000111 1456899877663335789999999999988777532200 000 01111 111110 012
Q ss_pred --EEEEEEEeecccccCCCCCeEEEEE------eCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEe
Q 047073 179 --KVIQILSYKDQAAISSSKPQVEVHT------IGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFD 250 (316)
Q Consensus 179 --kvv~~~~~~~~~~~~~~~~~~~vy~------s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD 250 (316)
++|... ..+++ .....+-|+. -..++|+.++... ..+..-|+.+|.+|.+...+ .+.++|
T Consensus 158 ~~~~~~~~-~~~~~---~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~---~~~~DIi~~kGkfYAvD~~G-----~l~~i~ 225 (373)
T PLN03215 158 QRSALVKV-KEGDN---HRDGVLGIGRDGKINYWDGNVLKALKQMG---YHFSDIIVHKGQTYALDSIG-----IVYWIN 225 (373)
T ss_pred eEEEEEEe-ecCCC---cceEEEEEeecCcEeeecCCeeeEccCCC---ceeeEEEEECCEEEEEcCCC-----eEEEEe
Confidence 222111 11111 0011111111 1147888886432 23344699999999995543 677777
Q ss_pred CCCceeeEecCC-CCccc-cCCCCccceEEEEECCeEEEEEccC----------------CCeEEEEEEeeCCCCCCeee
Q 047073 251 LGDEQFRQFPGP-PTREY-EKCRPINSISVGVSGGFLYLCDGFL----------------EPNLDIWIMKKYGVKESWTK 312 (316)
Q Consensus 251 ~~~~~~~~i~lP-P~~~~-~~~~~~~~~~L~~~~G~L~lv~~~~----------------~~~~~vW~l~~~~~~~~W~~ 312 (316)
.+-+ .+.+..+ ..... ..+ .....|+++.|+|++|.... ...++||.++.. ...|++
T Consensus 226 ~~l~-i~~v~~~i~~~~~~g~~--~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~--~~~Wve 300 (373)
T PLN03215 226 SDLE-FSRFGTSLDENITDGCW--TGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDE--LAKWME 300 (373)
T ss_pred cCCc-eeeecceecccccCCcc--cCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCC--CCcEEE
Confidence 4322 2222210 11111 110 13567999999999988631 146899999643 357998
Q ss_pred EEE
Q 047073 313 EFV 315 (316)
Q Consensus 313 ~~~ 315 (316)
+.+
T Consensus 301 V~s 303 (373)
T PLN03215 301 VKT 303 (373)
T ss_pred ecc
Confidence 764
No 5
>PHA02713 hypothetical protein; Provisional
Probab=98.96 E-value=6.7e-08 Score=93.11 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=100.5
Q ss_pred eeccCceEEeeeecc----CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCC
Q 047073 122 LSSCNGLICLHEFSY----KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP 197 (316)
Q Consensus 122 ~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~ 197 (316)
++..+|.|.+.++.. ....++.+||.+++|..+|+++. .+... ....++ -+|.+++...+. ....
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-~R~~~-~~~~~~-----g~IYviGG~~~~----~~~~ 367 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-NRCRF-SLAVID-----DTIYAIGGQNGT----NVER 367 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc-hhhce-eEEEEC-----CEEEEECCcCCC----CCCc
Confidence 344567776665321 13568899999999999999975 33221 111221 245555443211 2356
Q ss_pred eEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCC-------------------CccEEEEEeCCCceeeE
Q 047073 198 QVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDK-------------------RTAFMCSFDLGDEQFRQ 258 (316)
Q Consensus 198 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~i~~fD~~~~~~~~ 258 (316)
.+++|++.+++|+.++.+|..... ...+.++|.+|.+++.... ....+.+||+.+++|+.
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred eEEEEECCCCeEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 799999999999999888765433 3357789999999865311 02468999999999997
Q ss_pred e-cCCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073 259 F-PGPPTREYEKCRPINSISVGVSGGFLYLCDGF 291 (316)
Q Consensus 259 i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~ 291 (316)
+ ++ |... ....+++++|+|+++...
T Consensus 447 v~~m-~~~r-------~~~~~~~~~~~IYv~GG~ 472 (557)
T PHA02713 447 LPNF-WTGT-------IRPGVVSHKDDIYVVCDI 472 (557)
T ss_pred cCCC-Cccc-------ccCcEEEECCEEEEEeCC
Confidence 7 34 3332 344678999999999865
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.93 E-value=3.1e-08 Score=95.27 Aligned_cols=172 Identities=16% Similarity=0.187 Sum_probs=115.2
Q ss_pred eeeccCceEEeeeecc----CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCC
Q 047073 121 LLSSCNGLICLHEFSY----KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSK 196 (316)
Q Consensus 121 ~~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~ 196 (316)
-++..+|.|.+.++.. ..+.+..+||.+++|..+|++.. .+.. ++++. -..+|.+++...+. ...
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~--~~v~~----l~g~iYavGG~dg~----~~l 395 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSD--FGVAV----LDGKLYAVGGFDGE----KSL 395 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-cccc--ceeEE----ECCEEEEEeccccc----ccc
Confidence 4455677777776421 24689999999999999999976 2221 12221 12455555543322 457
Q ss_pred CeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEe-cCCCCccccCCCCc
Q 047073 197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPI 273 (316)
Q Consensus 197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~ 273 (316)
..+|.|++.++.|.....|+.. ......+.++|.+|-+++..... -..+.+||+.+++|+.+ ++ +...
T Consensus 396 ~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-~~~R------- 466 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-NTRR------- 466 (571)
T ss_pred ccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc-cccc-------
Confidence 7899999999999999888763 23334688999999998854332 36899999999999977 44 3322
Q ss_pred cceEEEEECCeEEEEEccCCCeEEEEEEeeCC-CCCCeeeE
Q 047073 274 NSISVGVSGGFLYLCDGFLEPNLDIWIMKKYG-VKESWTKE 313 (316)
Q Consensus 274 ~~~~L~~~~G~L~lv~~~~~~~~~vW~l~~~~-~~~~W~~~ 313 (316)
....+++++|+|+++....+ .-.+=..+-++ .+..|+..
T Consensus 467 ~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 467 SGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEc
Confidence 44568999999999998643 11111133333 34568765
No 7
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.91 E-value=4.6e-10 Score=70.75 Aligned_cols=43 Identities=28% Similarity=0.645 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHH
Q 047073 39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKI 81 (316)
Q Consensus 39 ~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~ 81 (316)
|..||+|++.+||..||++++.++..|||+|++++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 4689999999999999999999999999999999988765543
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.91 E-value=8.4e-08 Score=92.47 Aligned_cols=173 Identities=8% Similarity=0.051 Sum_probs=109.2
Q ss_pred eeeccCceEEeeeecc---CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeeccccc-----
Q 047073 121 LLSSCNGLICLHEFSY---KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAI----- 192 (316)
Q Consensus 121 ~~~s~~Gll~~~~~~~---~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~----- 192 (316)
.++..+|.|.+.++.. ....+.++||.|++|..+|+++. ..... .+..++ -+|.+++.......+
T Consensus 346 ~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~-~r~~~-~~~~~~-----g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI-ALSSY-GMCVLD-----QYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred eEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc-ccccc-cEEEEC-----CEEEEEeCCCcccccccccc
Confidence 4456678776665321 13468999999999999999876 33221 111221 233333322110000
Q ss_pred ---------CCCCCeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCC-ceeeEe-
Q 047073 193 ---------SSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGD-EQFRQF- 259 (316)
Q Consensus 193 ---------~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~-~~~~~i- 259 (316)
......++.|++.++.|+.++.++.... ....+.++|.||.+++..... ...+.+||+++ ++|+.+
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 0124679999999999999988766543 234688999999997643211 23578999999 799987
Q ss_pred cCCCCccccCCCCccceEEEEECCeEEEEEccCCCeEEEEEEeeCC-CCCCeeeE
Q 047073 260 PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYG-VKESWTKE 313 (316)
Q Consensus 260 ~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~~~~-~~~~W~~~ 313 (316)
++ |... .....++.+|+|+++....+ .. ..+-|+ .+.+|+..
T Consensus 498 ~m-~~~r-------~~~~~~~~~~~iyv~Gg~~~-~~---~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 498 TT-ESRL-------SALHTILHDNTIMMLHCYES-YM---LQDTFNVYTYEWNHI 540 (557)
T ss_pred cc-Cccc-------ccceeEEECCEEEEEeeecc-ee---ehhhcCcccccccch
Confidence 55 4433 55678999999999988633 11 123333 35578764
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=98.82 E-value=2e-07 Score=88.41 Aligned_cols=142 Identities=10% Similarity=0.010 Sum_probs=97.3
Q ss_pred eeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEE
Q 047073 122 LSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEV 201 (316)
Q Consensus 122 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~v 201 (316)
....+|.|.+.++......+..+||.+++|..+|+++. .+... .+..++ -+|.+++... .....++.
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~-~r~~~-~~~~~~-----g~IYviGG~~------~~~~~ve~ 380 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK-PRCNP-AVASIN-----NVIYVIGGHS------ETDTTTEY 380 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC-CCccc-EEEEEC-----CEEEEecCcC------CCCccEEE
Confidence 34568888777642223567889999999999999976 33221 122221 2455544321 11356899
Q ss_pred EEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE
Q 047073 202 HTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS 281 (316)
Q Consensus 202 y~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~ 281 (316)
|+++++.|+.++.++.+... ...+.+||.+|.+++ ...+||+++++|+.++-.|... ....+++.
T Consensus 381 ydp~~~~W~~~~~m~~~r~~-~~~~~~~~~IYv~GG-------~~e~ydp~~~~W~~~~~m~~~r-------~~~~~~v~ 445 (480)
T PHA02790 381 LLPNHDQWQFGPSTYYPHYK-SCALVFGRRLFLVGR-------NAEFYCESSNTWTLIDDPIYPR-------DNPELIIV 445 (480)
T ss_pred EeCCCCEEEeCCCCCCcccc-ceEEEECCEEEEECC-------ceEEecCCCCcEeEcCCCCCCc-------cccEEEEE
Confidence 99999999999887765432 335679999999863 3678999999999873213322 44577899
Q ss_pred CCeEEEEEcc
Q 047073 282 GGFLYLCDGF 291 (316)
Q Consensus 282 ~G~L~lv~~~ 291 (316)
+|+|+++...
T Consensus 446 ~~~IYviGG~ 455 (480)
T PHA02790 446 DNKLLLIGGF 455 (480)
T ss_pred CCEEEEECCc
Confidence 9999999875
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.76 E-value=3.7e-07 Score=87.96 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=116.0
Q ss_pred eeeccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCC
Q 047073 121 LLSSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP 197 (316)
Q Consensus 121 ~~~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~ 197 (316)
-+++++|.|...++. .....+-.+||.|.+|...++++. .+ .++|..... -+|..++...... ....
T Consensus 375 ~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r----~~~gv~~~~--g~iYi~GG~~~~~---~~l~ 444 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RR----SGHGVAVLG--GKLYIIGGGDGSS---NCLN 444 (571)
T ss_pred eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ce----eeeEEEEEC--CEEEEEcCcCCCc---cccc
Confidence 456778888777642 124468999999999999998864 22 233332222 2344443322211 2578
Q ss_pred eEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccce
Q 047073 198 QVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSI 276 (316)
Q Consensus 198 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~ 276 (316)
.++.|++.++.|+.++.|+...... ..+.+||.||.+++..... -..+.+||+.+++|+.+...+... ...
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-------s~~ 516 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRRSGF-GVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-------SAV 516 (571)
T ss_pred eEEEEcCCCCceeecCCcccccccc-eEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-------ccc
Confidence 9999999999999999887654333 3677999999998764321 346999999999999994213333 556
Q ss_pred EEEEECCeEEEEEccCC----CeEEEEEEeeCCCCCCeeeEE
Q 047073 277 SVGVSGGFLYLCDGFLE----PNLDIWIMKKYGVKESWTKEF 314 (316)
Q Consensus 277 ~L~~~~G~L~lv~~~~~----~~~~vW~l~~~~~~~~W~~~~ 314 (316)
.++..+|+|+++..... .+++.| |. ++..|+...
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~y---dp-~~d~W~~~~ 554 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECY---DP-ETDTWTEVT 554 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEc---CC-CCCceeeCC
Confidence 77899999999998632 566666 22 345698653
No 11
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.74 E-value=6.3e-09 Score=65.84 Aligned_cols=45 Identities=36% Similarity=0.575 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHH
Q 047073 39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHL 83 (316)
Q Consensus 39 ~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~ 83 (316)
+..||+|++.+||.+|+..++.+++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 347999999999999999999999999999999999998877654
No 12
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.65 E-value=9.7e-09 Score=62.56 Aligned_cols=39 Identities=36% Similarity=0.617 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHH
Q 047073 42 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAK 80 (316)
Q Consensus 42 LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~ 80 (316)
||+|++.+||.+|+.+++.+++.|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887754
No 13
>PHA03098 kelch-like protein; Provisional
Probab=98.58 E-value=4.7e-06 Score=80.36 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=107.8
Q ss_pred eeccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCe
Q 047073 122 LSSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQ 198 (316)
Q Consensus 122 ~~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~ 198 (316)
+...+|-|.+.++. .....+.++||.|++|..+|+++. .+..... ..++ =+|+.++....++ .....
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~-~~~~-----~~iYv~GG~~~~~---~~~~~ 407 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCV-VNVN-----NLIYVIGGISKND---ELLKT 407 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceE-EEEC-----CEEEEECCcCCCC---cccce
Confidence 34456766665532 114568899999999999998876 3322211 1221 1444443321111 23567
Q ss_pred EEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC----ccEEEEEeCCCceeeEecCCCCccccCCCCcc
Q 047073 199 VEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR----TAFMCSFDLGDEQFRQFPGPPTREYEKCRPIN 274 (316)
Q Consensus 199 ~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~ 274 (316)
+++|+..++.|+.+..+|.... ....+..+|.+|.+++..... ...+.+||+.+++|+.++..|... .
T Consensus 408 v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-------~ 479 (534)
T PHA03098 408 VECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-------I 479 (534)
T ss_pred EEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-------c
Confidence 9999999999999887765443 234677899999987653211 234999999999999884313322 3
Q ss_pred ceEEEEECCeEEEEEccCCC--eEEEEEEeeCCCCCCeeeE
Q 047073 275 SISVGVSGGFLYLCDGFLEP--NLDIWIMKKYGVKESWTKE 313 (316)
Q Consensus 275 ~~~L~~~~G~L~lv~~~~~~--~~~vW~l~~~~~~~~W~~~ 313 (316)
...++..+|+|+++....+. .-.||..+- + +..|+..
T Consensus 480 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~-~~~W~~~ 518 (534)
T PHA03098 480 NASLCIFNNKIYVVGGDKYEYYINEIEVYDD-K-TNTWTLF 518 (534)
T ss_pred cceEEEECCEEEEEcCCcCCcccceeEEEeC-C-CCEEEec
Confidence 34567789999998875321 235666642 2 4469854
No 14
>PHA03098 kelch-like protein; Provisional
Probab=98.57 E-value=4.1e-06 Score=80.72 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=98.7
Q ss_pred ceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCce
Q 047073 139 DIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYV 218 (316)
Q Consensus 139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~ 218 (316)
..++.+||.|++|..+|+++. .+.... ....+ -+|+.++..... .....+++|+..+++|+.++.+|.+
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~-~R~~~~-~~~~~-----~~lyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~lp~~ 379 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIY-PRKNPG-VTVFN-----NRIYVIGGIYNS----ISLNTVESWKPGESKWREEPPLIFP 379 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCc-ccccce-EEEEC-----CEEEEEeCCCCC----EecceEEEEcCCCCceeeCCCcCcC
Confidence 478999999999999999875 222211 11111 234444432211 3356789999999999998877764
Q ss_pred eccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCC--
Q 047073 219 LNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEP-- 294 (316)
Q Consensus 219 ~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~-- 294 (316)
.. ....+.++|.+|.+++..... ...+..||+.+++|+.++-.|... .....+..+|+|+++......
T Consensus 380 r~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 380 RY-NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-------YGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred Cc-cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-------cCceEEEECCEEEEECCccCCCC
Confidence 32 233577899999998743221 357899999999999873224333 233457789999998764211
Q ss_pred ---eEEEEEEeeCCCCCCeeeE
Q 047073 295 ---NLDIWIMKKYGVKESWTKE 313 (316)
Q Consensus 295 ---~~~vW~l~~~~~~~~W~~~ 313 (316)
.-.+|..+- .+..|+..
T Consensus 452 ~~~~~~v~~yd~--~~~~W~~~ 471 (534)
T PHA03098 452 IKVYNIVESYNP--VTNKWTEL 471 (534)
T ss_pred CcccceEEEecC--CCCceeeC
Confidence 123566532 24468864
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=98.56 E-value=2.8e-06 Score=80.65 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=94.6
Q ss_pred cCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEE
Q 047073 125 CNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEV 201 (316)
Q Consensus 125 ~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~v 201 (316)
.++.|.+.++. ........+||.++.|..+|+++. .+... .+...+ -+|.+++... ....++.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~-~r~~~-~~v~~~-----~~iYviGG~~-------~~~sve~ 335 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS-PRLYA-SGVPAN-----NKLYVVGGLP-------NPTSVER 335 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc-hhhcc-eEEEEC-----CEEEEECCcC-------CCCceEE
Confidence 45666555431 113467889999999999999876 33221 111121 2444443321 1256899
Q ss_pred EEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE
Q 047073 202 HTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS 281 (316)
Q Consensus 202 y~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~ 281 (316)
|+..+++|..++.+|.... ....+.++|.+|.+++.... ...+..||+.+++|+.++.+|... .....++.
T Consensus 336 ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~~r-------~~~~~~~~ 406 (480)
T PHA02790 336 WFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYYPH-------YKSCALVF 406 (480)
T ss_pred EECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCCcc-------ccceEEEE
Confidence 9999999999988875443 33467899999999875322 346889999999999884424333 33456789
Q ss_pred CCeEEEEEc
Q 047073 282 GGFLYLCDG 290 (316)
Q Consensus 282 ~G~L~lv~~ 290 (316)
+|+|+++..
T Consensus 407 ~~~IYv~GG 415 (480)
T PHA02790 407 GRRLFLVGR 415 (480)
T ss_pred CCEEEEECC
Confidence 999999864
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.54 E-value=6.4e-06 Score=74.20 Aligned_cols=152 Identities=9% Similarity=0.030 Sum_probs=93.2
Q ss_pred eeccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCe
Q 047073 122 LSSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQ 198 (316)
Q Consensus 122 ~~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~ 198 (316)
.+..+|.|.+..+. .....++++||.|++|..+|+++...+.. .....++ =+|..+..... .....
T Consensus 119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~-~~~~~~~-----~~iYv~GG~~~-----~~~~~ 187 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ-PVCVKLQ-----NELYVFGGGSN-----IAYTD 187 (323)
T ss_pred EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc-ceEEEEC-----CEEEEEcCCCC-----ccccc
Confidence 34457777666531 12457999999999999999765312221 1111221 13444443211 11345
Q ss_pred EEEEEeCCCceEecCCCCce-----eccCCcceeeCCeEEEEEecCCC--------------------------------
Q 047073 199 VEVHTIGTNTWRNIGDLPYV-----LNQPYYGAFLNSALHWYAHSHDK-------------------------------- 241 (316)
Q Consensus 199 ~~vy~s~t~~W~~~~~~~~~-----~~~~~~~v~~~G~lywl~~~~~~-------------------------------- 241 (316)
+++|+..+++|+.+..++.. .......+..+|.||.+++....
T Consensus 188 ~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (323)
T TIGR03548 188 GYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWY 267 (323)
T ss_pred eEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcccc
Confidence 78999999999998765321 11111124457899998765311
Q ss_pred -CccEEEEEeCCCceeeEec-CCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073 242 -RTAFMCSFDLGDEQFRQFP-GPPTREYEKCRPINSISVGVSGGFLYLCDGF 291 (316)
Q Consensus 242 -~~~~i~~fD~~~~~~~~i~-lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~ 291 (316)
....+.+||+.+++|+.++ + |...- ....++..+|+|+++...
T Consensus 268 ~~~~~v~~yd~~~~~W~~~~~~-p~~~r------~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 268 NWNRKILIYNVRTGKWKSIGNS-PFFAR------CGAALLLTGNNIFSINGE 312 (323)
T ss_pred CcCceEEEEECCCCeeeEcccc-ccccc------CchheEEECCEEEEEecc
Confidence 0146999999999999884 5 32111 344678999999998864
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.50 E-value=1.8e-05 Score=71.95 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=101.0
Q ss_pred ccCceEEeeeeccCCceEEEEcC--CCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeeccc--ccCCCCCeE
Q 047073 124 SCNGLICLHEFSYKQDIISVCNP--ILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQA--AISSSKPQV 199 (316)
Q Consensus 124 s~~Gll~~~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~--~~~~~~~~~ 199 (316)
..++-|.+..+. ....++++|+ .+++|..+|+++...+... .....+ -+|.++....... ........+
T Consensus 15 ~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-~~~~~~-----~~iYv~GG~~~~~~~~~~~~~~~v 87 (346)
T TIGR03547 15 IIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-VAAAID-----GKLYVFGGIGKANSEGSPQVFDDV 87 (346)
T ss_pred EECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccc-eEEEEC-----CEEEEEeCCCCCCCCCcceecccE
Confidence 446666665522 2467888885 6788999999873122211 111121 2455554322110 000124579
Q ss_pred EEEEeCCCceEecCC-CCceeccCCcce-eeCCeEEEEEecCCC-----------------------------------C
Q 047073 200 EVHTIGTNTWRNIGD-LPYVLNQPYYGA-FLNSALHWYAHSHDK-----------------------------------R 242 (316)
Q Consensus 200 ~vy~s~t~~W~~~~~-~~~~~~~~~~~v-~~~G~lywl~~~~~~-----------------------------------~ 242 (316)
+.|+..++.|+.+.. +|..... ...+ .++|.||.+++.... .
T Consensus 88 ~~Yd~~~~~W~~~~~~~p~~~~~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (346)
T TIGR03547 88 YRYDPKKNSWQKLDTRSPVGLLG-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFW 166 (346)
T ss_pred EEEECCCCEEecCCCCCCCcccc-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCc
Confidence 999999999999863 2322111 1123 579999999775311 0
Q ss_pred ccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEECCeEEEEEccCC---CeEEEEEEeeCCCCCCeeeE
Q 047073 243 TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE---PNLDIWIMKKYGVKESWTKE 313 (316)
Q Consensus 243 ~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~---~~~~vW~l~~~~~~~~W~~~ 313 (316)
...+.+||+.+++|+.+ ++ |.... ....++..+|+|+++..... ...++|..+-..++..|++.
T Consensus 167 ~~~v~~YDp~t~~W~~~~~~-p~~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~ 234 (346)
T TIGR03547 167 NKNVLSYDPSTNQWRNLGEN-PFLGT------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL 234 (346)
T ss_pred cceEEEEECCCCceeECccC-CCCcC------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec
Confidence 14799999999999988 45 32111 33466788999999876421 23456655311123468764
No 18
>PLN02153 epithiospecifier protein
Probab=98.46 E-value=2e-05 Score=71.52 Aligned_cols=178 Identities=10% Similarity=0.084 Sum_probs=101.8
Q ss_pred eccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCC--CccCceEEEEEeCCCCCeEEEEEEEeecccc--cCCC
Q 047073 123 SSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRK--NVATRIRGFGYNHCTNQYKVIQILSYKDQAA--ISSS 195 (316)
Q Consensus 123 ~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~--~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~--~~~~ 195 (316)
.+.++.|.+-.+. .....++++||.|++|..++++... +......++.... =+|+.+.....++. ....
T Consensus 82 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE----NHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred EEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC----CEEEEECCccCCCccCCCcc
Confidence 4445666554421 1134789999999999999875210 0111111111111 13444433221110 0012
Q ss_pred CCeEEEEEeCCCceEecCCCCce--eccCCcceeeCCeEEEEEecCC-------CC--ccEEEEEeCCCceeeEecC---
Q 047073 196 KPQVEVHTIGTNTWRNIGDLPYV--LNQPYYGAFLNSALHWYAHSHD-------KR--TAFMCSFDLGDEQFRQFPG--- 261 (316)
Q Consensus 196 ~~~~~vy~s~t~~W~~~~~~~~~--~~~~~~~v~~~G~lywl~~~~~-------~~--~~~i~~fD~~~~~~~~i~l--- 261 (316)
...+++|+..+++|+.++.+... .......+.++|.+|.+..... .. ...+.+||+++++|+.++.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 35689999999999998754321 1222235678999998865321 00 2468999999999998842
Q ss_pred CCCccccCCCCccceEEEEECCeEEEEEccCC---------C--eEEEEEEeeCCCCCCeeeE
Q 047073 262 PPTREYEKCRPINSISVGVSGGFLYLCDGFLE---------P--NLDIWIMKKYGVKESWTKE 313 (316)
Q Consensus 262 PP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~---------~--~~~vW~l~~~~~~~~W~~~ 313 (316)
.|... .....+..+|+|+++..... . .-+||.++-. +..|+++
T Consensus 238 ~P~~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~ 291 (341)
T PLN02153 238 KPSAR-------SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKL 291 (341)
T ss_pred CCCCc-------ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEec
Confidence 02222 33345778899999877411 1 1278998642 4469865
No 19
>PLN02153 epithiospecifier protein
Probab=98.39 E-value=2.4e-05 Score=71.02 Aligned_cols=139 Identities=11% Similarity=0.040 Sum_probs=84.8
Q ss_pred ceEEEEcCCCCceEecCCCCCCCcc-CceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCC--
Q 047073 139 DIISVCNPILGDHLVLPQLKRKNVA-TRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDL-- 215 (316)
Q Consensus 139 ~~~~v~NP~T~~~~~lP~~~~~~~~-~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~-- 215 (316)
..++++||.+++|..+|++...+.. .....+... .-+|+.+...... .....+++|+..+++|+.+..+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~----~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~ 121 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV----GTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDE 121 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE----CCEEEEECCCCCC----CccCcEEEEECCCCEEEEeccCCC
Confidence 4799999999999998876421111 111111111 1245555432211 2345789999999999988654
Q ss_pred ---CceeccCCcceeeCCeEEEEEecCCCC-------ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeE
Q 047073 216 ---PYVLNQPYYGAFLNSALHWYAHSHDKR-------TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFL 285 (316)
Q Consensus 216 ---~~~~~~~~~~v~~~G~lywl~~~~~~~-------~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L 285 (316)
|... .....+..+|.||.+++..... -..+.+||+.+++|..++.++...... ....++..+|+|
T Consensus 122 ~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r----~~~~~~~~~~~i 196 (341)
T PLN02153 122 EGGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR----GGAGFAVVQGKI 196 (341)
T ss_pred CCCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC----CcceEEEECCeE
Confidence 2221 1223577899999987753211 135889999999999875422111111 334567889999
Q ss_pred EEEEc
Q 047073 286 YLCDG 290 (316)
Q Consensus 286 ~lv~~ 290 (316)
+++..
T Consensus 197 yv~GG 201 (341)
T PLN02153 197 WVVYG 201 (341)
T ss_pred EEEec
Confidence 98754
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.37 E-value=6.5e-05 Score=67.68 Aligned_cols=142 Identities=10% Similarity=0.069 Sum_probs=86.1
Q ss_pred CceEEEEcCCCCce----EecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecC
Q 047073 138 QDIISVCNPILGDH----LVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIG 213 (316)
Q Consensus 138 ~~~~~v~NP~T~~~----~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~ 213 (316)
...++.+|+.+++| ..+|++|. ..... .+..++ -+|..+.....+ .....+++|+..++.|+.++
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~-~~~~~-~~~~~~-----~~iYv~GG~~~~----~~~~~v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPF-TFENG-SACYKD-----GTLYVGGGNRNG----KPSNKSYLFNLETQEWFELP 155 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCc-CccCc-eEEEEC-----CEEEEEeCcCCC----ccCceEEEEcCCCCCeeECC
Confidence 35788999999987 77888775 33222 111221 244444432111 23568999999999999998
Q ss_pred CCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073 214 DLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGF 291 (316)
Q Consensus 214 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~ 291 (316)
.+|.........+.++|.||.+++........+.+||+.+++|+.++..+....... ......++..+|+|+++...
T Consensus 156 ~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~-~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 156 DFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPIS-LLGAASIKINESLLLCIGGF 232 (323)
T ss_pred CCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCcee-ccceeEEEECCCEEEEECCc
Confidence 766433333335678999999987532212346899999999998743121110000 00233345567888888764
No 21
>PLN02193 nitrile-specifier protein
Probab=98.35 E-value=8.8e-05 Score=70.32 Aligned_cols=178 Identities=7% Similarity=0.050 Sum_probs=103.4
Q ss_pred eccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073 123 SSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV 199 (316)
Q Consensus 123 ~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~ 199 (316)
...++.|.+..+. .....++++||.|++|..++++...+.......+... .=+|+.+...... .....+
T Consensus 225 v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~----~~~iYv~GG~~~~----~~~~~~ 296 (470)
T PLN02193 225 VSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD----EENVYVFGGVSAT----ARLKTL 296 (470)
T ss_pred EEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE----CCEEEEECCCCCC----CCcceE
Confidence 3446666555421 1145799999999999999876321111111122211 1245544332211 235678
Q ss_pred EEEEeCCCceEecCCCCc--eeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceE
Q 047073 200 EVHTIGTNTWRNIGDLPY--VLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSIS 277 (316)
Q Consensus 200 ~vy~s~t~~W~~~~~~~~--~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~ 277 (316)
++|+..+++|+.++.+.. ........+.++|.+|.+..........+.+||+++++|+.++..+..+... ....
T Consensus 297 ~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R----~~~~ 372 (470)
T PLN02193 297 DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER----SVFA 372 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc----ceeE
Confidence 999999999998764211 1112223567899999887643211357999999999999884211111111 3345
Q ss_pred EEEECCeEEEEEccCC---------CeE--EEEEEeeCCCCCCeeeEE
Q 047073 278 VGVSGGFLYLCDGFLE---------PNL--DIWIMKKYGVKESWTKEF 314 (316)
Q Consensus 278 L~~~~G~L~lv~~~~~---------~~~--~vW~l~~~~~~~~W~~~~ 314 (316)
.+..+++|+++..... ..+ ++|.++-. +..|++..
T Consensus 373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~ 418 (470)
T PLN02193 373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLD 418 (470)
T ss_pred EEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcc
Confidence 6778999998887421 112 58998642 44698653
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.31 E-value=9.5e-05 Score=68.08 Aligned_cols=177 Identities=13% Similarity=0.006 Sum_probs=101.8
Q ss_pred eccCceEEeeeeccCCceEEEEcCC--CCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeeccc-cc-CCCCCe
Q 047073 123 SSCNGLICLHEFSYKQDIISVCNPI--LGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQA-AI-SSSKPQ 198 (316)
Q Consensus 123 ~s~~Gll~~~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~-~~-~~~~~~ 198 (316)
+..++-|.+..+. ....++++|+. +++|..+|+++...+.. ......+ -+|..++...... .. ......
T Consensus 35 ~~~~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~-~~~v~~~-----~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 35 AIDNNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQ-AVAAFID-----GKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred EEECCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCccc-ceEEEEC-----CEEEEEcCCCCCCCCCceeEccc
Confidence 4456677665422 24568888875 57899999876412211 1111111 1344443321100 00 012457
Q ss_pred EEEEEeCCCceEecCCC-CceeccCCccee-eCCeEEEEEecCCC-----------------------------------
Q 047073 199 VEVHTIGTNTWRNIGDL-PYVLNQPYYGAF-LNSALHWYAHSHDK----------------------------------- 241 (316)
Q Consensus 199 ~~vy~s~t~~W~~~~~~-~~~~~~~~~~v~-~~G~lywl~~~~~~----------------------------------- 241 (316)
++.|+..+++|+.+..+ |.... ....+. .+|.||.+++....
T Consensus 108 v~~YD~~~n~W~~~~~~~p~~~~-~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 108 VYKYDPKTNSWQKLDTRSPVGLA-GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred EEEEeCCCCEEEeCCCCCCCccc-ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 99999999999998742 33221 112333 79999999875310
Q ss_pred CccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEECCeEEEEEccC---CCeEEEEEEeeCCCCCCeeeEE
Q 047073 242 RTAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSGGFLYLCDGFL---EPNLDIWIMKKYGVKESWTKEF 314 (316)
Q Consensus 242 ~~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~---~~~~~vW~l~~~~~~~~W~~~~ 314 (316)
....+.+||+.+++|+.+ ++ |.... ....++..+++|+++.... ....++|..+-+..+..|+++.
T Consensus 187 ~~~~v~~YD~~t~~W~~~~~~-p~~~~------~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 187 FNKEVLSYDPSTNQWKNAGES-PFLGT------AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred cCceEEEEECCCCeeeECCcC-CCCCC------CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 014699999999999987 45 32111 3345677899999988632 2456677664222345698653
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.28 E-value=8e-05 Score=68.56 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=60.8
Q ss_pred CeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC----ccEEEEEeCCCceeeEe-cCCCCccccC-C
Q 047073 197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR----TAFMCSFDLGDEQFRQF-PGPPTREYEK-C 270 (316)
Q Consensus 197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~i~~fD~~~~~~~~i-~lPP~~~~~~-~ 270 (316)
..+++|+..++.|+.++.+|.........+.+++.||.+++..... ......||+++++|..+ ++| ...... .
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p-~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP-PAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC-CCCcCCcC
Confidence 5799999999999998877653223333577799999998753211 34556778899999987 453 221100 0
Q ss_pred CCccceEEEEECCeEEEEEcc
Q 047073 271 RPINSISVGVSGGFLYLCDGF 291 (316)
Q Consensus 271 ~~~~~~~L~~~~G~L~lv~~~ 291 (316)
........++.+|+|+++...
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred CccceEeceeECCEEEEeecc
Confidence 000122356789999988754
No 24
>PLN02193 nitrile-specifier protein
Probab=98.26 E-value=9.3e-05 Score=70.14 Aligned_cols=160 Identities=11% Similarity=0.082 Sum_probs=96.8
Q ss_pred ceEEEEcCCCCceEecCCCCCCCc-cC-ceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCC-
Q 047073 139 DIISVCNPILGDHLVLPQLKRKNV-AT-RIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDL- 215 (316)
Q Consensus 139 ~~~~v~NP~T~~~~~lP~~~~~~~-~~-~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~- 215 (316)
..++++||.+++|..+|+....+. .. ......++ =+|+.+...... .....+++|+..+++|+.+..+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-----~~lYvfGG~~~~----~~~ndv~~yD~~t~~W~~l~~~~ 263 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-----STLYVFGGRDAS----RQYNGFYSFDTTTNEWKLLTPVE 263 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC-----CEEEEECCCCCC----CCCccEEEEECCCCEEEEcCcCC
Confidence 468999999999998876421011 11 11111221 134444332111 2356799999999999998755
Q ss_pred --CceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccC
Q 047073 216 --PYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFL 292 (316)
Q Consensus 216 --~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~ 292 (316)
|... .....+..++.||.+....... ...+.+||+.+++|+.++.|....... ....++..+|+++++....
T Consensus 264 ~~P~~R-~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R----~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 264 EGPTPR-SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIR----GGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred CCCCCc-cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCC----CCcEEEEECCcEEEEECCC
Confidence 2221 2233566899999987753221 346889999999999886532222111 3446677899999887642
Q ss_pred C-CeEEEEEEeeCCCCCCeeeEE
Q 047073 293 E-PNLDIWIMKKYGVKESWTKEF 314 (316)
Q Consensus 293 ~-~~~~vW~l~~~~~~~~W~~~~ 314 (316)
. ..-++|+.+- . +..|++.-
T Consensus 339 g~~~~dv~~yD~-~-t~~W~~~~ 359 (470)
T PLN02193 339 GCEVDDVHYYDP-V-QDKWTQVE 359 (470)
T ss_pred CCccCceEEEEC-C-CCEEEEec
Confidence 2 2345777743 2 34698753
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.17 E-value=7.8e-05 Score=67.79 Aligned_cols=136 Identities=12% Similarity=-0.001 Sum_probs=84.4
Q ss_pred ceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEE--eCCCceEecCCCC
Q 047073 139 DIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHT--IGTNTWRNIGDLP 216 (316)
Q Consensus 139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~--s~t~~W~~~~~~~ 216 (316)
..+.++||.|++|..+++++...... .....++ -+|+.+......+ .....+++|+ .+++.|..+..++
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~-~~~~~~~-----~~iyv~GG~~~~~---~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAG-SAIVHKG-----NKLLLINGEIKPG---LRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCC-ceEEEEC-----CEEEEEeeeeCCC---ccchheEEEEecCCCceeeecCCCC
Confidence 57899999999999999886411221 1112221 2455554322111 1223455565 4677999998776
Q ss_pred ceecc------CCcceeeCCeEEEEEecCCCC------------------ccEEEEEeCCCceeeEe-cCCCCccccCCC
Q 047073 217 YVLNQ------PYYGAFLNSALHWYAHSHDKR------------------TAFMCSFDLGDEQFRQF-PGPPTREYEKCR 271 (316)
Q Consensus 217 ~~~~~------~~~~v~~~G~lywl~~~~~~~------------------~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~ 271 (316)
..... ....+.++|.||.+++..... ...+.+||+++++|+.+ ++ |...
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~~----- 312 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL-PQGL----- 312 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC-CCCc-----
Confidence 54211 111467899999998753100 12578999999999887 56 4332
Q ss_pred CccceEEEEECCeEEEEEcc
Q 047073 272 PINSISVGVSGGFLYLCDGF 291 (316)
Q Consensus 272 ~~~~~~L~~~~G~L~lv~~~ 291 (316)
.....+.++|+|+++...
T Consensus 313 --~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 313 --AYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred --eeeEEEEcCCEEEEEecc
Confidence 223457789999999875
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.73 E-value=0.00026 Score=61.98 Aligned_cols=45 Identities=27% Similarity=0.376 Sum_probs=39.8
Q ss_pred CCCCCCC----HHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHH
Q 047073 37 VSMEDLP----LPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKI 81 (316)
Q Consensus 37 ~~~~~LP----~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~ 81 (316)
..+..|| +++.+.||+.|...+|..+..|||+|+.+++++..-++
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 3455799 99999999999999999999999999999999876544
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=7.4e-05 Score=64.59 Aligned_cols=43 Identities=40% Similarity=0.596 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHH
Q 047073 36 NVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF 78 (316)
Q Consensus 36 ~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F 78 (316)
...|..||||++..||++|+.++|.++..|||+|+.+-.+...
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 3447899999999999999999999999999999998876553
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.36 E-value=0.0017 Score=55.26 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=65.9
Q ss_pred CCCCeEEEEEeCCCceEecC--CCCceeccCCcceeeCCeEEEEEecCCCC----------ccEEEEEeCCCceeeEecC
Q 047073 194 SSKPQVEVHTIGTNTWRNIG--DLPYVLNQPYYGAFLNSALHWYAHSHDKR----------TAFMCSFDLGDEQFRQFPG 261 (316)
Q Consensus 194 ~~~~~~~vy~s~t~~W~~~~--~~~~~~~~~~~~v~~~G~lywl~~~~~~~----------~~~i~~fD~~~~~~~~i~l 261 (316)
.....+++++..|-+|+.+. ..|..+..+...+.++|.+|-.++..... -..|++||+.|+.|..-+-
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 44677888889999999976 33444455666778899999998876431 3469999999999986522
Q ss_pred CCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073 262 PPTREYEKCRPINSISVGVSGGFLYLCDGF 291 (316)
Q Consensus 262 PP~~~~~~~~~~~~~~L~~~~G~L~lv~~~ 291 (316)
-+..+... ..-..-+++|+++++...
T Consensus 234 ~~~~P~GR----RSHS~fvYng~~Y~FGGY 259 (392)
T KOG4693|consen 234 NTMKPGGR----RSHSTFVYNGKMYMFGGY 259 (392)
T ss_pred CCcCCCcc----cccceEEEcceEEEeccc
Confidence 12333222 333557889999998864
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.78 E-value=0.14 Score=48.83 Aligned_cols=162 Identities=13% Similarity=0.105 Sum_probs=91.8
Q ss_pred ceEEEEcCCCCceEecCCCCCCCccCc-eEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCc
Q 047073 139 DIISVCNPILGDHLVLPQLKRKNVATR-IRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPY 217 (316)
Q Consensus 139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~-~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~ 217 (316)
..++.+|+.|++|..+.+....+.... ..+..+ +++ ++.++.....+ .....++||+..+..|..+.....
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~----g~~-l~vfGG~~~~~---~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV----GTK-LVVFGGIGGTG---DSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEE----CCE-EEEECCccCcc---cceeeeeeeccccccceecccCCC
Confidence 489999999999998775433111111 112222 123 33332221111 257889999999999998763321
Q ss_pred e--eccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCC
Q 047073 218 V--LNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE 293 (316)
Q Consensus 218 ~--~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~ 293 (316)
. .......+.+++.++.+.+...++ -.-+..||+.+.+|..++.=....... ....++..+..+.++.....
T Consensus 211 ~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R----~~h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 211 APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR----SGHSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc----ceeeeEEECCEEEEEcCCcc
Confidence 1 112222455555555555444232 456899999999998442101222211 34455666667888777543
Q ss_pred ----CeEEEEEEeeCCCCCCeeeEE
Q 047073 294 ----PNLDIWIMKKYGVKESWTKEF 314 (316)
Q Consensus 294 ----~~~~vW~l~~~~~~~~W~~~~ 314 (316)
.--++|.|+.. +..|++..
T Consensus 287 ~~~~~l~~~~~l~~~--~~~w~~~~ 309 (482)
T KOG0379|consen 287 PKQEPLGDLYGLDLE--TLVWSKVE 309 (482)
T ss_pred ccccccccccccccc--ccceeeee
Confidence 35577888543 44688764
No 30
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.37 E-value=0.0016 Score=56.73 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHhcCC-----ccccccccccchhhhhhcCCHHHHHHHHhc
Q 047073 39 MEDLPLPILVDVFSRLP-----IKTILQIKCVCKTWHSLCSDPYFAKIHLAR 85 (316)
Q Consensus 39 ~~~LP~dll~~IL~rLP-----~~sl~r~r~VcK~W~sli~s~~F~~~~~~~ 85 (316)
+..||+|||.+||.++= +.++.++.+|||.|+-...+|.|-+..+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K 158 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK 158 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence 45799999999998754 589999999999999999999998877654
No 31
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.14 E-value=0.15 Score=46.38 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=69.4
Q ss_pred CCeEEEEEeCCCceEecCCCCcee-ccCCcceee-CCeEEEEEecCCCC-------ccEEEEEeCCCceeeEecCCCCcc
Q 047073 196 KPQVEVHTIGTNTWRNIGDLPYVL-NQPYYGAFL-NSALHWYAHSHDKR-------TAFMCSFDLGDEQFRQFPGPPTRE 266 (316)
Q Consensus 196 ~~~~~vy~s~t~~W~~~~~~~~~~-~~~~~~v~~-~G~lywl~~~~~~~-------~~~i~~fD~~~~~~~~i~lPP~~~ 266 (316)
...+.+|+..+++|+.+..+..++ .+....|.+ .|.+|..+++-... ..-+..||+.+.+|..+.+ +..+
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~-~g~P 175 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF-GGGP 175 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeecc-CCCC
Confidence 456778899999999876432222 222223444 46555554443221 3358999999999999988 5444
Q ss_pred ccCCCCccceEEEEECCeEEEEEccCC------CeEEEEEEeeCCCCCCeeeEE
Q 047073 267 YEKCRPINSISVGVSGGFLYLCDGFLE------PNLDIWIMKKYGVKESWTKEF 314 (316)
Q Consensus 267 ~~~~~~~~~~~L~~~~G~L~lv~~~~~------~~~~vW~l~~~~~~~~W~~~~ 314 (316)
... ..-+++.++.+|.++...++ --=+||+.+- ++..|+|..
T Consensus 176 S~R----SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Kle 223 (521)
T KOG1230|consen 176 SPR----SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLE 223 (521)
T ss_pred CCC----ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeecc
Confidence 332 44578889999988876543 1224566532 245798853
No 32
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.08 E-value=0.37 Score=43.79 Aligned_cols=132 Identities=12% Similarity=0.095 Sum_probs=74.9
Q ss_pred eeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccC-CCCCeE
Q 047073 121 LLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAIS-SSKPQV 199 (316)
Q Consensus 121 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~-~~~~~~ 199 (316)
+.+-.+.-|+..+ . .....|+|+.|.....+|.+.. ..... +.+.. .+ ++.++.......... .....+
T Consensus 71 F~al~gskIv~~d-~--~~~t~vyDt~t~av~~~P~l~~-pk~~p-isv~V---G~--~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 71 FFALHGSKIVAVD-Q--SGRTLVYDTDTRAVATGPRLHS-PKRCP-ISVSV---GD--KLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEecCCeEEEEc-C--CCCeEEEECCCCeEeccCCCCC-CCcce-EEEEe---CC--eEEEeeccCccccccCccceeE
Confidence 3333344444444 2 5679999999999999998765 22222 22222 11 255554432211000 000145
Q ss_pred EEE--E--------eCCCceEecCCCCceeccC------Cc-ceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEe---
Q 047073 200 EVH--T--------IGTNTWRNIGDLPYVLNQP------YY-GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQF--- 259 (316)
Q Consensus 200 ~vy--~--------s~t~~W~~~~~~~~~~~~~------~~-~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i--- 259 (316)
|++ + ..+.+|+.++.+|+..... .. .|+ +|.-.|++..+. ...-.+||+++.+|+..
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~--~~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR--RWGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC--ceEEEEEEcCCcceeeccce
Confidence 555 3 2234788887766543321 12 454 899899977731 02689999999999988
Q ss_pred cCCCCcc
Q 047073 260 PGPPTRE 266 (316)
Q Consensus 260 ~lPP~~~ 266 (316)
.| |...
T Consensus 218 ~L-PF~G 223 (342)
T PF07893_consen 218 ML-PFHG 223 (342)
T ss_pred ec-CcCC
Confidence 68 6544
No 33
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.91 E-value=0.11 Score=44.42 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=84.9
Q ss_pred CceEEEEcCCCCceEecCCCCCCCccCc----------eEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCC
Q 047073 138 QDIISVCNPILGDHLVLPQLKRKNVATR----------IRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTN 207 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~----------~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~ 207 (316)
....+++|-.|-.|+.+-.-..++.+++ .+.|| ...+++-.+. ... +.++..+.+++..|+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFG--GR~D~~gpfH-----s~~--e~Yc~~i~~ld~~T~ 226 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFG--GRSDESGPFH-----SIH--EQYCDTIMALDLATG 226 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEec--cccccCCCcc-----chh--hhhcceeEEEecccc
Confidence 4579999999999998764333223322 11111 1111111110 001 267888999999999
Q ss_pred ceEecCCCCceec--cCCcceeeCCeEEEEEecCCCC---ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEEC
Q 047073 208 TWRNIGDLPYVLN--QPYYGAFLNSALHWYAHSHDKR---TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSG 282 (316)
Q Consensus 208 ~W~~~~~~~~~~~--~~~~~v~~~G~lywl~~~~~~~---~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~ 282 (316)
.|...+..+..+. ...+....||.+|..++....- -.-+..||+.+..|..|..--..+... .....++.+
T Consensus 227 aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aR----RRqC~~v~g 302 (392)
T KOG4693|consen 227 AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSAR----RRQCSVVSG 302 (392)
T ss_pred ccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcc----cceeEEEEC
Confidence 9987653222211 2223456799999987764221 346899999999999996521122111 445567789
Q ss_pred CeEEEEEcc
Q 047073 283 GFLYLCDGF 291 (316)
Q Consensus 283 G~L~lv~~~ 291 (316)
||++++...
T Consensus 303 ~kv~LFGGT 311 (392)
T KOG4693|consen 303 GKVYLFGGT 311 (392)
T ss_pred CEEEEecCC
Confidence 999988754
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.61 E-value=0.51 Score=43.05 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=87.4
Q ss_pred CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecc---cccCCCCCeEEEEEeCCCceEecC-
Q 047073 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQ---AAISSSKPQVEVHTIGTNTWRNIG- 213 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~---~~~~~~~~~~~vy~s~t~~W~~~~- 213 (316)
...+|++|--+.+|..+-.+.. +..++...+...++. .+..++....+ ..+ .+.-.+++|+..+..|..+.
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~-P~pRsshq~va~~s~---~l~~fGGEfaSPnq~qF-~HYkD~W~fd~~trkweql~~ 171 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNA-PPPRSSHQAVAVPSN---ILWLFGGEFASPNQEQF-HHYKDLWLFDLKTRKWEQLEF 171 (521)
T ss_pred eeeeeEEeccccceeEeccCCC-cCCCccceeEEeccC---eEEEeccccCCcchhhh-hhhhheeeeeeccchheeecc
Confidence 5689999999999987544333 222222333333433 22222111111 110 33556889999999999876
Q ss_pred -CCCceeccCCcceeeCCeEEEEEecCCCC-----ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE-CCeEE
Q 047073 214 -DLPYVLNQPYYGAFLNSALHWYAHSHDKR-----TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS-GGFLY 286 (316)
Q Consensus 214 -~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~-~G~L~ 286 (316)
..|.+. ...+-|.....|.-.++=.... ..-|.+||+++=+|+.+..+-..+... ...++.+. +|.++
T Consensus 172 ~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR----SGcq~~vtpqg~i~ 246 (521)
T KOG1230|consen 172 GGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR----SGCQFSVTPQGGIV 246 (521)
T ss_pred CCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC----CcceEEecCCCcEE
Confidence 333322 1122222222222221111100 235899999999999996632112211 44555665 78777
Q ss_pred EEEccC-----------CCeEEEEEEeeCC---CCCCeeeE
Q 047073 287 LCDGFL-----------EPNLDIWIMKKYG---VKESWTKE 313 (316)
Q Consensus 287 lv~~~~-----------~~~~~vW~l~~~~---~~~~W~~~ 313 (316)
+..... ..+=++|.|+-.. ++-.|+++
T Consensus 247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv 287 (521)
T KOG1230|consen 247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV 287 (521)
T ss_pred EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec
Confidence 665421 2567899997432 22346654
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.57 E-value=0.03 Score=35.15 Aligned_cols=36 Identities=6% Similarity=0.158 Sum_probs=30.3
Q ss_pred cceeeCCeEEEEEecCC-CC-ccEEEEEeCCCceeeEe
Q 047073 224 YGAFLNSALHWYAHSHD-KR-TAFMCSFDLGDEQFRQF 259 (316)
Q Consensus 224 ~~v~~~G~lywl~~~~~-~~-~~~i~~fD~~~~~~~~i 259 (316)
..|.++|.||.+++... .. ...+..||+++++|+.+
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC
Confidence 36889999999988865 22 56899999999999988
No 36
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.41 E-value=0.9 Score=43.85 Aligned_cols=233 Identities=10% Similarity=0.073 Sum_probs=117.7
Q ss_pred CCCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHHhcCC-CC---c---EEEecc----C-Ccccc
Q 047073 35 YNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAP-FS---I---MILEKF----C-KRIYT 102 (316)
Q Consensus 35 ~~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~~~~~-~~---~---~~~~~~----~-~~~~~ 102 (316)
....+..||.++...||..|+.+++.+++.||+.|+.++.+.....+.+.... .. . +-.... . .++|.
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~ 183 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYR 183 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhh
Confidence 35567789999999999999999999999999999999987666543332221 11 1 111000 1 12222
Q ss_pred -----CCCccceecC----CCC-CCCceeeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEe
Q 047073 103 -----NSLVPLFTLN----QGD-KERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYN 172 (316)
Q Consensus 103 -----~~~~~~~~~~----~~~-~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d 172 (316)
...+.....+ ..+ .....+...-++-.|..+.. ...+.+|+..+++....+.. .....+-++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~--~~tl~~~~~~~~~~i~~~l~---GH~g~V~~l~~~ 258 (537)
T KOG0274|consen 184 RRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSD--DSTLHLWDLNNGYLILTRLV---GHFGGVWGLAFP 258 (537)
T ss_pred hhhhccccccccccccceeecccCcchhhhheeecCeEEecCC--CceeEEeecccceEEEeecc---CCCCCceeEEEe
Confidence 1111111000 000 00111111111222333212 55667999999987764332 233334455553
Q ss_pred CCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCC-CCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeC
Q 047073 173 HCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGD-LPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDL 251 (316)
Q Consensus 173 ~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~ 251 (316)
. ++.+++-.. ...+..|.+..+|.=..+-. .... ...+...+ .+-.++.. +..|.++|+
T Consensus 259 ~--~~~~lvsgS----------~D~t~rvWd~~sg~C~~~l~gh~st----v~~~~~~~-~~~~sgs~---D~tVkVW~v 318 (537)
T KOG0274|consen 259 S--GGDKLVSGS----------TDKTERVWDCSTGECTHSLQGHTSS----VRCLTIDP-FLLVSGSR---DNTVKVWDV 318 (537)
T ss_pred c--CCCEEEEEe----------cCCcEEeEecCCCcEEEEecCCCce----EEEEEccC-ceEeeccC---CceEEEEec
Confidence 3 345555432 24566676766664433211 1100 00111111 22222111 568888998
Q ss_pred CCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCCeEEEEEEe
Q 047073 252 GDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMK 302 (316)
Q Consensus 252 ~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~ 302 (316)
.+.....+.- - +. ....-+.+++.+.+.... +..+.||-..
T Consensus 319 ~n~~~l~l~~-~-h~-------~~V~~v~~~~~~lvsgs~-d~~v~VW~~~ 359 (537)
T KOG0274|consen 319 TNGACLNLLR-G-HT-------GPVNCVQLDEPLLVSGSY-DGTVKVWDPR 359 (537)
T ss_pred cCcceEEEec-c-cc-------ccEEEEEecCCEEEEEec-CceEEEEEhh
Confidence 8766544322 1 11 334555566666555554 5589999754
No 37
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.03 E-value=0.71 Score=44.04 Aligned_cols=160 Identities=9% Similarity=0.002 Sum_probs=89.0
Q ss_pred eEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCc-e
Q 047073 140 IISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPY-V 218 (316)
Q Consensus 140 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~-~ 218 (316)
+++|+|--+..|.........+....-..+..- + =+++.++...... .....+..|+..|+.|+.+..... +
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~---~-~~l~lfGG~~~~~---~~~~~l~~~d~~t~~W~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV---G-DKLYLFGGTDKKY---RNLNELHSLDLSTRTWSLLSPTGDPP 161 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEE---C-CeEEEEccccCCC---CChhheEeccCCCCcEEEecCcCCCC
Confidence 599999999888865543221111111111110 1 2344443322111 346789999999999998763322 1
Q ss_pred eccCCc-ceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccC---
Q 047073 219 LNQPYY-GAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFL--- 292 (316)
Q Consensus 219 ~~~~~~-~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~--- 292 (316)
...... .+..+-.+|..++.+... ...+.+||+++.+|..+......+... ..-.++..+++++++..-.
T Consensus 162 ~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR----~gH~~~~~~~~~~v~gG~~~~~ 237 (482)
T KOG0379|consen 162 PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR----YGHAMVVVGNKLLVFGGGDDGD 237 (482)
T ss_pred CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC----CCceEEEECCeEEEEeccccCC
Confidence 112233 344455566665554332 457999999999999985422222111 4446678888888877642
Q ss_pred CCeEEEEEEeeCCCCCCeee
Q 047073 293 EPNLDIWIMKKYGVKESWTK 312 (316)
Q Consensus 293 ~~~~~vW~l~~~~~~~~W~~ 312 (316)
...=++|.|+-. .-.|.+
T Consensus 238 ~~l~D~~~ldl~--~~~W~~ 255 (482)
T KOG0379|consen 238 VYLNDVHILDLS--TWEWKL 255 (482)
T ss_pred ceecceEeeecc--cceeee
Confidence 144467777532 234653
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.69 E-value=0.093 Score=32.24 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=31.4
Q ss_pred cceeeCCeEEEEEecCC-CC-ccEEEEEeCCCceeeEe-cC
Q 047073 224 YGAFLNSALHWYAHSHD-KR-TAFMCSFDLGDEQFRQF-PG 261 (316)
Q Consensus 224 ~~v~~~G~lywl~~~~~-~~-~~~i~~fD~~~~~~~~i-~l 261 (316)
..+.++|.+|.+++... .. ...+..||+.+++|..+ ++
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 36889999999998866 22 67899999999999987 44
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.63 E-value=0.55 Score=40.62 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=73.1
Q ss_pred eeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEE
Q 047073 121 LLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVE 200 (316)
Q Consensus 121 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~ 200 (316)
++..-+|=|-..... ...+..+||.++.-..+|.+.. .....-.+..|+.. -+.+.. .....+.
T Consensus 194 i~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~--~~~gsRriwsdpig----~~witt--------wg~g~l~ 257 (353)
T COG4257 194 ICATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNA--LKAGSRRIWSDPIG----RAWITT--------WGTGSLH 257 (353)
T ss_pred eEECCCCcEEEEecc--ccceEEcccccCCcceecCCCc--ccccccccccCccC----cEEEec--------cCCceee
Confidence 334445555444212 5678889999998888887754 11112233333321 122222 3357788
Q ss_pred EEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCC
Q 047073 201 VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGP 262 (316)
Q Consensus 201 vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lP 262 (316)
.|+..+-+|++.+.+......+..-|.-.|. .|++.-+ ...|..||+++++|+.+++|
T Consensus 258 rfdPs~~sW~eypLPgs~arpys~rVD~~gr-VW~sea~---agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 258 RFDPSVTSWIEYPLPGSKARPYSMRVDRHGR-VWLSEAD---AGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred EeCcccccceeeeCCCCCCCcceeeeccCCc-EEeeccc---cCceeecCcccceEEEecCC
Confidence 8999999999876443333333223333444 4554333 56999999999999999994
No 40
>PF13964 Kelch_6: Kelch motif
Probab=94.07 E-value=0.13 Score=32.22 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCceEecCCCCC
Q 047073 138 QDIISVCNPILGDHLVLPQLKR 159 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~ 159 (316)
...+.++||.|++|..||+++.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 5789999999999999999875
No 41
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=93.83 E-value=0.45 Score=36.61 Aligned_cols=72 Identities=25% Similarity=0.335 Sum_probs=48.6
Q ss_pred EEEEEeCCCc--eeeEecCCCCccccCC------CCccceEEEEECCeEEEEEccC---------CCeEEEEEEeeC-CC
Q 047073 245 FMCSFDLGDE--QFRQFPGPPTREYEKC------RPINSISVGVSGGFLYLCDGFL---------EPNLDIWIMKKY-GV 306 (316)
Q Consensus 245 ~i~~fD~~~~--~~~~i~lPP~~~~~~~------~~~~~~~L~~~~G~L~lv~~~~---------~~~~~vW~l~~~-~~ 306 (316)
.|+..|+-.+ .++.|+||+....... .......+++.+|+|-+|.... +.++.+|.|... ++
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5788888765 7888999643332111 1124556788999998888642 357999999874 12
Q ss_pred CCCeeeEEEC
Q 047073 307 KESWTKEFVI 316 (316)
Q Consensus 307 ~~~W~~~~~i 316 (316)
...|.+.+++
T Consensus 87 ~~~W~~d~~v 96 (131)
T PF07762_consen 87 SWEWKKDCEV 96 (131)
T ss_pred CCCEEEeEEE
Confidence 4469998864
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.63 E-value=0.21 Score=31.13 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=29.7
Q ss_pred ceeeCCeEEEEEec--CCCC--ccEEEEEeCCCceeeEecC
Q 047073 225 GAFLNSALHWYAHS--HDKR--TAFMCSFDLGDEQFRQFPG 261 (316)
Q Consensus 225 ~v~~~G~lywl~~~--~~~~--~~~i~~fD~~~~~~~~i~l 261 (316)
.+.++|+||.++.. +... ...+..||+++.+|+.++.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 67889999999887 1111 6679999999999998854
No 43
>smart00612 Kelch Kelch domain.
Probab=91.11 E-value=0.4 Score=28.92 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCCeEEEEEeCCCceEecCCCCcee
Q 047073 195 SKPQVEVHTIGTNTWRNIGDLPYVL 219 (316)
Q Consensus 195 ~~~~~~vy~s~t~~W~~~~~~~~~~ 219 (316)
....+++|+++++.|+.++.++...
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCCCcc
Confidence 3577999999999999988776543
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=90.82 E-value=0.48 Score=29.29 Aligned_cols=35 Identities=6% Similarity=0.213 Sum_probs=21.7
Q ss_pred ceee-CCeEEEEEecCCCC--ccEEEEEeCCCceeeEe
Q 047073 225 GAFL-NSALHWYAHSHDKR--TAFMCSFDLGDEQFRQF 259 (316)
Q Consensus 225 ~v~~-~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i 259 (316)
.+.+ ++.+|..++..... -.-+..||+++++|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4555 57888887765431 34688999999999988
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.72 E-value=0.36 Score=29.49 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=19.8
Q ss_pred CCCCeEEEEEeCCCceEecCCCC
Q 047073 194 SSKPQVEVHTIGTNTWRNIGDLP 216 (316)
Q Consensus 194 ~~~~~~~vy~s~t~~W~~~~~~~ 216 (316)
.....+++|+..++.|+.++.||
T Consensus 25 ~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 25 QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SBEEEEEEEETTTTEEEEEEEES
T ss_pred ceeeeEEEEeCCCCEEEEcCCCC
Confidence 56889999999999999987654
No 46
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.51 E-value=2.3 Score=38.13 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=69.6
Q ss_pred CCeEEEEEeCCCceEecCCC-CceeccCCcceeeCC-eEEEEEecCCC--------------------------------
Q 047073 196 KPQVEVHTIGTNTWRNIGDL-PYVLNQPYYGAFLNS-ALHWYAHSHDK-------------------------------- 241 (316)
Q Consensus 196 ~~~~~vy~s~t~~W~~~~~~-~~~~~~~~~~v~~~G-~lywl~~~~~~-------------------------------- 241 (316)
...+..|++.+++|..+... |.. .....++..++ .+|........
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 45678899999999988743 433 33344555555 67776654311
Q ss_pred ---CccEEEEEeCCCceeeEec-CCCCccccCCCCccceEEEEECCeEEEEEccC---CCeEEEEEEeeCCCCCCeeeE
Q 047073 242 ---RTAFMCSFDLGDEQFRQFP-GPPTREYEKCRPINSISVGVSGGFLYLCDGFL---EPNLDIWIMKKYGVKESWTKE 313 (316)
Q Consensus 242 ---~~~~i~~fD~~~~~~~~i~-lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~---~~~~~vW~l~~~~~~~~W~~~ 313 (316)
....+++||+.+++|+..- . |.... +....+.-+++|.+|...- -.+-.+|+.+-.++...|.++
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~-pf~~~------aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l 262 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGEN-PFYGN------AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKL 262 (381)
T ss_pred HhcccccccccccccchhhhcCcC-cccCc------cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeec
Confidence 0456899999999999884 6 65553 3333444566788887642 145556665443345568875
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=87.14 E-value=0.8 Score=28.27 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=14.4
Q ss_pred CCCeEEEEEeCCCceEecCCCC
Q 047073 195 SKPQVEVHTIGTNTWRNIGDLP 216 (316)
Q Consensus 195 ~~~~~~vy~s~t~~W~~~~~~~ 216 (316)
....+++|+..+++|+.++.+|
T Consensus 27 ~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE--SS-
T ss_pred ccCCEEEEECCCCEEEECCCCC
Confidence 4678899999999999997665
No 48
>smart00612 Kelch Kelch domain.
Probab=86.47 E-value=2.6 Score=25.12 Aligned_cols=17 Identities=6% Similarity=0.147 Sum_probs=14.5
Q ss_pred ccEEEEEeCCCceeeEe
Q 047073 243 TAFMCSFDLGDEQFRQF 259 (316)
Q Consensus 243 ~~~i~~fD~~~~~~~~i 259 (316)
...+..||+.+++|..+
T Consensus 14 ~~~v~~yd~~~~~W~~~ 30 (47)
T smart00612 14 LKSVEVYDPETNKWTPL 30 (47)
T ss_pred eeeEEEECCCCCeEccC
Confidence 34689999999999876
No 49
>PLN02772 guanylate kinase
Probab=86.19 E-value=5.3 Score=36.82 Aligned_cols=75 Identities=9% Similarity=0.033 Sum_probs=52.2
Q ss_pred CcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEec---CCCCccccCCCCccceEEEEECCeEEEEEccCCCeEE
Q 047073 223 YYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFP---GPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLD 297 (316)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~---lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~ 297 (316)
...|.+++.+|.+++..... ...+.+||..+.+|..-. -||...+ +...++.-+++|.++..-....=+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~------GhSa~v~~~~rilv~~~~~~~~~~ 101 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK------GYSAVVLNKDRILVIKKGSAPDDS 101 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC------cceEEEECCceEEEEeCCCCCccc
Confidence 44788999999998765432 457999999999997542 2233332 233444457889888865566789
Q ss_pred EEEEee
Q 047073 298 IWIMKK 303 (316)
Q Consensus 298 vW~l~~ 303 (316)
+|.|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 999973
No 50
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=85.22 E-value=1.7 Score=26.86 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.6
Q ss_pred CCCCeEEEEEeCCCceEecCCCC
Q 047073 194 SSKPQVEVHTIGTNTWRNIGDLP 216 (316)
Q Consensus 194 ~~~~~~~vy~s~t~~W~~~~~~~ 216 (316)
.....+++|+.++.+|+.++.++
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred cccceeEEEECCCCEEeecCCCC
Confidence 56888999999999999987653
No 51
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.21 E-value=6.2 Score=37.30 Aligned_cols=67 Identities=12% Similarity=0.290 Sum_probs=36.7
Q ss_pred CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCC--ceEecC
Q 047073 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTN--TWRNIG 213 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~--~W~~~~ 213 (316)
-+++.|+|-+|+||. +|.... .....+.++||-.. .-+|++|+.... ...+.-+.|..... .|+.+.
T Consensus 56 iDELHvYNTatnqWf-~PavrG-DiPpgcAA~Gfvcd--GtrilvFGGMvE-----YGkYsNdLYELQasRWeWkrlk 124 (830)
T KOG4152|consen 56 IDELHVYNTATNQWF-APAVRG-DIPPGCAAFGFVCD--GTRILVFGGMVE-----YGKYSNDLYELQASRWEWKRLK 124 (830)
T ss_pred hhhhhhhccccceee-cchhcC-CCCCchhhcceEec--CceEEEEccEee-----eccccchHHHhhhhhhhHhhcC
Confidence 458999999999998 444433 22222344444332 245666544332 22345556665544 566654
No 52
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=83.65 E-value=1.7 Score=26.85 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=20.6
Q ss_pred CCCCeEEEEEeCCCceEecCCCCce
Q 047073 194 SSKPQVEVHTIGTNTWRNIGDLPYV 218 (316)
Q Consensus 194 ~~~~~~~vy~s~t~~W~~~~~~~~~ 218 (316)
.....+.+|+..++.|+.++.+|..
T Consensus 16 ~~~nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 16 TRLNDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred CEecCEEEEECCCCEEEECCCCCCC
Confidence 4568899999999999999766654
No 53
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.84 E-value=22 Score=32.18 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=53.8
Q ss_pred CCCeEEEEEeCCCceEecCCCCceeccCCcceeeCCe-EEEEEecCCCC----ccEEEEEeCCCceeeEe-cCCCCcccc
Q 047073 195 SKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSA-LHWYAHSHDKR----TAFMCSFDLGDEQFRQF-PGPPTREYE 268 (316)
Q Consensus 195 ~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~----~~~i~~fD~~~~~~~~i-~lPP~~~~~ 268 (316)
....+-+|++.++.|+.....|...... ..+...|. +-.+..+-... .-...-|.-...+|..+ .+|+...+.
T Consensus 194 ~n~ev~sy~p~~n~W~~~G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~ 272 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLGENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN 272 (381)
T ss_pred ccccccccccccchhhhcCcCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCC
Confidence 3566778999999999998777655443 34445555 55554443221 23445556667899887 564332222
Q ss_pred CCCCccceEEEEECCeEEEEE
Q 047073 269 KCRPINSISVGVSGGFLYLCD 289 (316)
Q Consensus 269 ~~~~~~~~~L~~~~G~L~lv~ 289 (316)
..+.....-+..+|.+.+..
T Consensus 273 -~eGvAGaf~G~s~~~~lv~G 292 (381)
T COG3055 273 -KEGVAGAFSGKSNGEVLVAG 292 (381)
T ss_pred -ccccceeccceeCCeEEEec
Confidence 12334445566666665554
No 54
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.00 E-value=19 Score=31.18 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=53.2
Q ss_pred CcceeeCCeEEEEEecCCCCccEEEEEeCCCceee-EecCCCCcccc-----CCCCccceEEEEECCeEEEEEccCC--C
Q 047073 223 YYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFR-QFPGPPTREYE-----KCRPINSISVGVSGGFLYLCDGFLE--P 294 (316)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~-~i~lPP~~~~~-----~~~~~~~~~L~~~~G~L~lv~~~~~--~ 294 (316)
...|+.||.+|+.... ...|+.||+.++.-. ...| |..... .+.+.....+++-+.-|-++....+ .
T Consensus 72 tG~vVYngslYY~~~~----s~~IvkydL~t~~v~~~~~L-~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYN----SRNIVKYDLTTRSVVARREL-PGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred CCeEEECCcEEEEecC----CceEEEEECcCCcEEEEEEC-CccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 3357789999998875 568999999999887 6678 433221 1123467788888888887776532 3
Q ss_pred eEEEEEEee
Q 047073 295 NLDIWIMKK 303 (316)
Q Consensus 295 ~~~vW~l~~ 303 (316)
.+-|=.|+.
T Consensus 147 ~ivvskld~ 155 (250)
T PF02191_consen 147 NIVVSKLDP 155 (250)
T ss_pred cEEEEeeCc
Confidence 577777753
No 55
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=79.10 E-value=4 Score=25.12 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=19.3
Q ss_pred CceEEEEcCCCCceEecCCCCC
Q 047073 138 QDIISVCNPILGDHLVLPQLKR 159 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~ 159 (316)
..+++++||.|++|..++.+|.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCC
Confidence 5689999999999999987765
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=79.06 E-value=50 Score=29.97 Aligned_cols=84 Identities=17% Similarity=0.340 Sum_probs=48.8
Q ss_pred eEEEEEeCCCceEecCC--CCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCcee-----------eEecCCCC
Q 047073 198 QVEVHTIGTNTWRNIGD--LPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQF-----------RQFPGPPT 264 (316)
Q Consensus 198 ~~~vy~s~t~~W~~~~~--~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~-----------~~i~lPP~ 264 (316)
...-|+-.++.|+..++ +|+. ..+.|+...--|++-...+....|.+.|+....- ..+.. |.
T Consensus 200 GTysfDt~~~~W~~~GdW~LPF~----G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~-~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLPFH----GQAEYVPELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFP-PE 274 (342)
T ss_pred EEEEEEcCCcceeeccceecCcC----CccEECCCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccccc-cc
Confidence 57777888889999874 3432 2245555555666665433234889999876322 22222 22
Q ss_pred ccccCCCCccceEEEEE-CCeEEEEEcc
Q 047073 265 REYEKCRPINSISVGVS-GGFLYLCDGF 291 (316)
Q Consensus 265 ~~~~~~~~~~~~~L~~~-~G~L~lv~~~ 291 (316)
. .. .....|+.+ +|+.|++...
T Consensus 275 ~--~~---~~~~~Lv~lG~grFCi~~~~ 297 (342)
T PF07893_consen 275 E--WR---HVGATLVYLGSGRFCIVEFF 297 (342)
T ss_pred c--cc---ccCceEEECCCCCEEEEEEe
Confidence 1 11 145566666 4579998853
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.52 E-value=1.2 Score=40.83 Aligned_cols=37 Identities=32% Similarity=0.616 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhcCCccccccccccchhhhhhcCCH
Q 047073 40 EDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDP 76 (316)
Q Consensus 40 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~ 76 (316)
-.||.+++..||+-|..+++.|++.+|+.|+-+..+.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 3699999999999999999999999999999987654
No 58
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=74.80 E-value=10 Score=28.00 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.9
Q ss_pred CceEEEEcCCCC-ceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEE
Q 047073 138 QDIISVCNPILG-DHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQIL 184 (316)
Q Consensus 138 ~~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~ 184 (316)
...++++||.|+ .|...-+. ...+.+-+|+..+.|+||...
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKH------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCCCC------ceeEEEEecCCCcEEEEEEec
Confidence 568999999997 78643321 236788889999999999864
No 59
>smart00284 OLF Olfactomedin-like domains.
Probab=73.09 E-value=34 Score=29.61 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=51.1
Q ss_pred CcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEe-cCCCCcc-c----cCCCCccceEEEEECCeEEEEEccC--CC
Q 047073 223 YYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQF-PGPPTRE-Y----EKCRPINSISVGVSGGFLYLCDGFL--EP 294 (316)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i-~lPP~~~-~----~~~~~~~~~~L~~~~G~L~lv~~~~--~~ 294 (316)
...|+.||.+|+.... ...|+.||+.+++.... .| |... . ..+.+.....|++-+.-|-++.... +.
T Consensus 77 tG~VVYngslYY~~~~----s~~iiKydL~t~~v~~~~~L-p~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 77 TGVVVYNGSLYFNKFN----SHDICRFDLTTETYQKEPLL-NGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred ccEEEECceEEEEecC----CccEEEEECCCCcEEEEEec-CccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 3468899999996655 45899999999988644 56 4321 1 1112346788888888887776542 36
Q ss_pred eEEEEEEee
Q 047073 295 NLDIWIMKK 303 (316)
Q Consensus 295 ~~~vW~l~~ 303 (316)
.|-|=.|+.
T Consensus 152 ~ivvSkLnp 160 (255)
T smart00284 152 KIVISKLNP 160 (255)
T ss_pred CEEEEeeCc
Confidence 677777754
No 60
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=72.06 E-value=60 Score=27.48 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=62.8
Q ss_pred eeeccCceEEeeeecc----CC--ceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCC
Q 047073 121 LLSSCNGLICLHEFSY----KQ--DIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISS 194 (316)
Q Consensus 121 ~~~s~~Gll~~~~~~~----~~--~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~ 194 (316)
+....+|-+.+.+... .. +.++.++|- ++...+... .....++.+++..+.. +... .
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----~~~pNGi~~s~dg~~l--yv~d---------s 153 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----LGFPNGIAFSPDGKTL--YVAD---------S 153 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----ESSEEEEEEETTSSEE--EEEE---------T
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-----cccccceEECCcchhe--eecc---------c
Confidence 3344467666664210 11 578888888 554443221 1125688888754322 2221 3
Q ss_pred CCCeEEEEEeCCC--ceEe---cCCCCcee-ccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCC
Q 047073 195 SKPQVEVHTIGTN--TWRN---IGDLPYVL-NQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGP 262 (316)
Q Consensus 195 ~~~~~~vy~s~t~--~W~~---~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lP 262 (316)
....+..|+.... .+.. ...++... .+..-.+..+|.+|..... ...|.+||++.+....|++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEEEEETTSCEEEEEE-S
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEEEECCCccEEEEEcCC
Confidence 4566777776532 2322 11111110 0111134457888776554 46999999998889999994
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=70.64 E-value=82 Score=28.44 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=54.9
Q ss_pred CCCeEEEEEeC--CCceEecC---CCCceecc--CCcceee--CCeEEEEEecCCCCccEEEEEeC--CCceeeEecCCC
Q 047073 195 SKPQVEVHTIG--TNTWRNIG---DLPYVLNQ--PYYGAFL--NSALHWYAHSHDKRTAFMCSFDL--GDEQFRQFPGPP 263 (316)
Q Consensus 195 ~~~~~~vy~s~--t~~W~~~~---~~~~~~~~--~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~--~~~~~~~i~lPP 263 (316)
....+.+|+.. ++.++.+. ..|..... ....+.+ +|..-|.+..+ ...|.+|++ ++...+.+..=+
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---SNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---TTEEEEEEECTTTTTEEEEEEEE
T ss_pred CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---CCEEEEEEEecCCCceEEEEEEe
Confidence 35667777766 67776544 22221111 1123333 68877776666 558888887 445676663202
Q ss_pred CccccCCCCccceEEEE-ECCeEEEEEccCCCeEEEEEEee
Q 047073 264 TREYEKCRPINSISVGV-SGGFLYLCDGFLEPNLDIWIMKK 303 (316)
Q Consensus 264 ~~~~~~~~~~~~~~L~~-~~G~L~lv~~~~~~~~~vW~l~~ 303 (316)
.... ....+.. -+|+..++.......+.++.++.
T Consensus 289 ~~G~------~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 289 TGGK------FPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp ESSS------SEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCC------CccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 2111 1222222 36765555554578999999863
No 62
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=69.22 E-value=1e+02 Score=28.98 Aligned_cols=146 Identities=9% Similarity=0.004 Sum_probs=80.9
Q ss_pred eEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCC
Q 047073 128 LICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTN 207 (316)
Q Consensus 128 ll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~ 207 (316)
.++... . ..-+|.||-.|.+...+-++.... ....-.|-..+.. .|. ++. .....+.+....|+
T Consensus 272 ~i~~s~-r--rky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~-~fi--a~~---------G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 272 VIFTSG-R--RKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDS-NFI--AIA---------GNNGHIHLLHAKTK 335 (514)
T ss_pred EEEecc-c--ceEEEEeeccccccccccCCCCcc-cchhheeEecCCC-CeE--EEc---------ccCceEEeehhhhh
Confidence 455555 3 678999999999998887775412 1111222222221 233 322 23566778888888
Q ss_pred ceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEE-EECCeEE
Q 047073 208 TWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVG-VSGGFLY 286 (316)
Q Consensus 208 ~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~-~~~G~L~ 286 (316)
.|-+.-..+.... .-...-+|...|+++. .+.|.++|+........=. +... .....++ ..+|.+.
T Consensus 336 eli~s~KieG~v~--~~~fsSdsk~l~~~~~----~GeV~v~nl~~~~~~~rf~--D~G~-----v~gts~~~S~ng~yl 402 (514)
T KOG2055|consen 336 ELITSFKIEGVVS--DFTFSSDSKELLASGG----TGEVYVWNLRQNSCLHRFV--DDGS-----VHGTSLCISLNGSYL 402 (514)
T ss_pred hhhheeeeccEEe--eEEEecCCcEEEEEcC----CceEEEEecCCcceEEEEe--ecCc-----cceeeeeecCCCceE
Confidence 8854322211111 1123357788888766 4589999999884422211 1010 1333333 3577754
Q ss_pred EEEccCCCeEEEEEEee
Q 047073 287 LCDGFLEPNLDIWIMKK 303 (316)
Q Consensus 287 lv~~~~~~~~~vW~l~~ 303 (316)
.+.. +...++||-.++
T Consensus 403 A~GS-~~GiVNIYd~~s 418 (514)
T KOG2055|consen 403 ATGS-DSGIVNIYDGNS 418 (514)
T ss_pred Eecc-CcceEEEeccch
Confidence 4444 478888888654
No 63
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=68.86 E-value=91 Score=28.27 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=77.5
Q ss_pred ceEEEEcCCCCceEe-cCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCc--eE-ecCC
Q 047073 139 DIISVCNPILGDHLV-LPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNT--WR-NIGD 214 (316)
Q Consensus 139 ~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~--W~-~~~~ 214 (316)
++++|+|.-+++..- +|.. + ...+...+..+.+.+.-..+.+.... .....+++|+..|=. +. .|+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g----~---~~~~~~spdgk~~y~a~T~~sR~~rG--~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG----F---LGNVALSPDGKTIYVAETFYSRGTRG--ERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE----S---SEEEEE-TTSSEEEEEEEEEEETTEE--EEEEEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEeecc----c---CCceeECCCCCEEEEEEEEEeccccc--cceeEEEEEecCcCcccceEecCC
Confidence 477888877776442 2211 1 22344566666677777666665432 457889999999874 32 2332
Q ss_pred CCcee---ccCCcceeeCCe-EEEEEecCCCCccEEEEEeCCCcee-eEecCCCCcccc-CCCCccceEEEEECCeEEEE
Q 047073 215 LPYVL---NQPYYGAFLNSA-LHWYAHSHDKRTAFMCSFDLGDEQF-RQFPGPPTREYE-KCRPINSISVGVSGGFLYLC 288 (316)
Q Consensus 215 ~~~~~---~~~~~~v~~~G~-lywl~~~~~~~~~~i~~fD~~~~~~-~~i~lPP~~~~~-~~~~~~~~~L~~~~G~L~lv 288 (316)
-|... ......+..+|+ +|...... ...|-+.|++..++ .+|+. |.+... .. +...+....-+|+|.-+
T Consensus 88 k~R~~~~~~~~~~~ls~dgk~~~V~N~TP---a~SVtVVDl~~~kvv~ei~~-PGC~~iyP~-~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSADGKFLYVQNFTP---ATSVTVVDLAAKKVVGEIDT-PGCWLIYPS-GNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp S-B--BS--GGGEEE-TTSSEEEEEEESS---SEEEEEEETTTTEEEEEEEG-TSEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred cchheecccccceEEccCCcEEEEEccCC---CCeEEEEECCCCceeeeecC-CCEEEEEec-CCCceEEEecCCceEEE
Confidence 22221 112225556776 45444443 45899999998877 77789 544321 10 00334444457777777
Q ss_pred EccC
Q 047073 289 DGFL 292 (316)
Q Consensus 289 ~~~~ 292 (316)
..+.
T Consensus 163 ~Ld~ 166 (342)
T PF06433_consen 163 TLDA 166 (342)
T ss_dssp EETS
T ss_pred EECC
Confidence 6653
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=68.41 E-value=68 Score=26.64 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=75.5
Q ss_pred eccCceEEeeeeccCCceEEEEcCCCCceEe---cCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073 123 SSCNGLICLHEFSYKQDIISVCNPILGDHLV---LPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV 199 (316)
Q Consensus 123 ~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~---lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~ 199 (316)
...+|.+++.. . ...++.+|..||+... ....+... ........++ ++.-++.. ....+
T Consensus 73 ~~~~~~v~v~~-~--~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~-----------~~g~l 134 (238)
T PF13360_consen 73 VVDGGRVYVGT-S--DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD---GDRLYVGT-----------SSGKL 134 (238)
T ss_dssp EEETTEEEEEE-T--TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE---TTEEEEEE-----------TCSEE
T ss_pred eeccccccccc-c--eeeeEecccCCcceeeeeccccccccc-cccccCceEe---cCEEEEEe-----------ccCcE
Confidence 33455555554 3 5599999999998432 21111101 1111111111 22332321 14667
Q ss_pred EEEEeCCC--ceEecCCCCceec-------cCCcceeeCCeEEEEEecCCCCccEEEEEeCCCce--eeEecCCCCcccc
Q 047073 200 EVHTIGTN--TWRNIGDLPYVLN-------QPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQ--FRQFPGPPTREYE 268 (316)
Q Consensus 200 ~vy~s~t~--~W~~~~~~~~~~~-------~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~--~~~i~lPP~~~~~ 268 (316)
..++..+| .|+.-...+.... .....+..+|.+|.....+ .++++|+++.. |+ .+. ..
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----~~~~~d~~tg~~~w~-~~~-~~---- 203 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-----RVVAVDLATGEKLWS-KPI-SG---- 203 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-----SEEEEETTTTEEEEE-ECS-S-----
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-----eEEEEECCCCCEEEE-ecC-CC----
Confidence 88888877 5766333322110 1133565678777766553 47888999987 52 222 11
Q ss_pred CCCCccceEEEEECCeEEEEEccCCCeEEEEEEeeCCCCCCee
Q 047073 269 KCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWT 311 (316)
Q Consensus 269 ~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~~~~~~~~W~ 311 (316)
........+|.|++.. . +..+..|-++.. +..|+
T Consensus 204 -----~~~~~~~~~~~l~~~~-~-~~~l~~~d~~tG--~~~W~ 237 (238)
T PF13360_consen 204 -----IYSLPSVDGGTLYVTS-S-DGRLYALDLKTG--KVVWQ 237 (238)
T ss_dssp -----ECECEECCCTEEEEEE-T-TTEEEEEETTTT--EEEEE
T ss_pred -----ccCCceeeCCEEEEEe-C-CCEEEEEECCCC--CEEeE
Confidence 1111234455566555 3 577777766542 34575
No 65
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.94 E-value=9.9 Score=22.15 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=18.3
Q ss_pred CcceeeCCeEEEEEecCCCCccEEEEEeCCC
Q 047073 223 YYGAFLNSALHWYAHSHDKRTAFMCSFDLGD 253 (316)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~ 253 (316)
..+++.+|.+|.-..++ .+.+||.+|
T Consensus 15 ~~~~v~~g~vyv~~~dg-----~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-----NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-----EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-----EEEEEeCCC
Confidence 33677899999887765 899999875
No 66
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=67.18 E-value=20 Score=26.68 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEE
Q 047073 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQIL 184 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~ 184 (316)
...++++||.|+.|.. ..+. ......+.+.+++..+.|+|+...
T Consensus 8 rA~Vm~~d~~tk~W~P--~~~~-~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 8 RASVMVYDDSNKKWVP--AGGG-SQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEEeeEEcCCCCcEEc--CCCC-CCCcceEEEEEcCCCCEEEEEEee
Confidence 5689999999999764 3321 223346777788888899998753
No 67
>PF13013 F-box-like_2: F-box-like domain
Probab=66.61 E-value=3.2 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHhcCCccccccccccch
Q 047073 38 SMEDLPLPILVDVFSRLPIKTILQIKCVCK 67 (316)
Q Consensus 38 ~~~~LP~dll~~IL~rLP~~sl~r~r~VcK 67 (316)
.+.+||+||+..|+..-..+++...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 367899999999999999888766665555
No 68
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=66.08 E-value=5.1 Score=34.59 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=35.8
Q ss_pred CCCCCCCCCHHHHHHHHhcCC-ccccccccccchhhhhhcCCHHHHHH
Q 047073 35 YNVSMEDLPLPILVDVFSRLP-IKTILQIKCVCKTWHSLCSDPYFAKI 81 (316)
Q Consensus 35 ~~~~~~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~sli~s~~F~~~ 81 (316)
...++.+||.+++.+||.||| -.+|..+..|--.-..++.+...-+.
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkk 245 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKK 245 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHH
Confidence 466788999999999999999 77888777776666666665544433
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=63.39 E-value=92 Score=26.33 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=66.1
Q ss_pred eeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEE
Q 047073 122 LSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEV 201 (316)
Q Consensus 122 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~v 201 (316)
....+|-|++.+.. ..+++.+||.+++...+..+. ..++.++...+. ++... .....+
T Consensus 7 ~d~~~g~l~~~D~~--~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~--l~v~~-----------~~~~~~ 64 (246)
T PF08450_consen 7 WDPRDGRLYWVDIP--GGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGR--LYVAD-----------SGGIAV 64 (246)
T ss_dssp EETTTTEEEEEETT--TTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSE--EEEEE-----------TTCEEE
T ss_pred EECCCCEEEEEEcC--CCEEEEEECCCCeEEEEecCC-------CceEEEEccCCE--EEEEE-----------cCceEE
Confidence 34457777777644 789999999999876544332 357777743333 23222 344566
Q ss_pred EEeCCCceEecCCCCc---eeccCCc-ceeeCCeEEEEEecCCCC--c--cEEEEEeCCCceeeEe
Q 047073 202 HTIGTNTWRNIGDLPY---VLNQPYY-GAFLNSALHWYAHSHDKR--T--AFMCSFDLGDEQFRQF 259 (316)
Q Consensus 202 y~s~t~~W~~~~~~~~---~~~~~~~-~v~~~G~lywl~~~~~~~--~--~~i~~fD~~~~~~~~i 259 (316)
++..++.++.+...+. .....+. .+.-+|.+|.-....... . ..|..+|.+ .+...+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 6888888877653311 1111111 344478877765543221 2 679999999 544443
No 70
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=62.97 E-value=88 Score=25.96 Aligned_cols=105 Identities=11% Similarity=0.012 Sum_probs=54.3
Q ss_pred cCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEe
Q 047073 125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTI 204 (316)
Q Consensus 125 ~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s 204 (316)
.+|.+++.. . ...++.+|+.||+...--..+. ..... .... .-+|+... . ...+..++.
T Consensus 35 ~~~~v~~~~-~--~~~l~~~d~~tG~~~W~~~~~~-~~~~~--~~~~-----~~~v~v~~---~-------~~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVAS-G--DGNLYALDAKTGKVLWRFDLPG-PISGA--PVVD-----GGRVYVGT---S-------DGSLYALDA 93 (238)
T ss_dssp ETTEEEEEE-T--TSEEEEEETTTSEEEEEEECSS-CGGSG--EEEE-----TTEEEEEE---T-------TSEEEEEET
T ss_pred eCCEEEEEc-C--CCEEEEEECCCCCEEEEeeccc-cccce--eeec-----cccccccc---c-------eeeeEeccc
Confidence 577777775 4 8899999999998543222222 11111 1111 11222221 1 236777777
Q ss_pred CCC--ceE-ecCCCCc-eeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCce
Q 047073 205 GTN--TWR-NIGDLPY-VLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQ 255 (316)
Q Consensus 205 ~t~--~W~-~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~ 255 (316)
.+| .|+ .....+. ...........++.+|..... ..|.++|+.+.+
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~l~~~d~~tG~ 143 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-----GKLVALDPKTGK 143 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-----SEEEEEETTTTE
T ss_pred CCcceeeeeccccccccccccccCceEecCEEEEEecc-----CcEEEEecCCCc
Confidence 777 788 3432121 111122233345566655534 389999988663
No 71
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.57 E-value=1.5e+02 Score=28.51 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=73.8
Q ss_pred eCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecC--CCCceeccCCcceeeCCeEEEEEec----CC-----
Q 047073 172 NHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIG--DLPYVLNQPYYGAFLNSALHWYAHS----HD----- 240 (316)
Q Consensus 172 d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~--~~~~~~~~~~~~v~~~G~lywl~~~----~~----- 240 (316)
...++.-|+|.++...+ .....++..+.+|=+|.... ..+.....-...+.++.++|..++= ..
T Consensus 210 eKDs~~skmvvyGGM~G-----~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~ 284 (830)
T KOG4152|consen 210 EKDSKKSKMVVYGGMSG-----CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVA 284 (830)
T ss_pred eccCCcceEEEEccccc-----ccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccc
Confidence 44455677776654322 34566788888999998754 2221122334467788888876431 11
Q ss_pred -CC-----ccEEEEEeCCCceeeEecCCCCccccCC-CCccceEEEEECCeEEEEEccC---------CCeEEEEEEee
Q 047073 241 -KR-----TAFMCSFDLGDEQFRQFPGPPTREYEKC-RPINSISVGVSGGFLYLCDGFL---------EPNLDIWIMKK 303 (316)
Q Consensus 241 -~~-----~~~i~~fD~~~~~~~~i~lPP~~~~~~~-~~~~~~~L~~~~G~L~lv~~~~---------~~~~~vW~l~~ 303 (316)
++ ...+-.+|+++..|..+-+ -...+... .+...-.-+..+.+|++-...+ -..-++|.|+.
T Consensus 285 ~hekEWkCTssl~clNldt~~W~tl~~-d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 285 THEKEWKCTSSLACLNLDTMAWETLLM-DTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred cccceeeeccceeeeeecchheeeeee-ccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 01 5678999999999988754 22221100 1112223455677888877643 15568899864
No 72
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=61.62 E-value=48 Score=28.54 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCC----ceeeEecCCCCccccCCC
Q 047073 196 KPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGD----EQFRQFPGPPTREYEKCR 271 (316)
Q Consensus 196 ~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~----~~~~~i~lPP~~~~~~~~ 271 (316)
.....+|+..+++++.+.. .....+....+.-||.+.-.++...+ ...+-.|++.+ ..|.+.+- ......|
T Consensus 45 ~a~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~~G-~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW- 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDNDG-NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW- 119 (243)
T ss_pred eEEEEEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCCcc-ccceEEEecCCCCCCCCceECcc--cccCCCc-
Confidence 4557789999999998853 33333444456678887765554332 44677788765 45654322 2333333
Q ss_pred CccceEEEEECCeEEEEEccCCCeEEEEE
Q 047073 272 PINSISVGVSGGFLYLCDGFLEPNLDIWI 300 (316)
Q Consensus 272 ~~~~~~L~~~~G~L~lv~~~~~~~~~vW~ 300 (316)
+.....--||++.++......+.+.|=
T Consensus 120 --YpT~~~L~DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 120 --YPTATTLPDGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred --cccceECCCCCEEEEeCcCCCcccccC
Confidence 433344458898888876555555443
No 73
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=59.52 E-value=1.4e+02 Score=27.34 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=20.6
Q ss_pred CcceeeCCeEEEEEecCCCCccEEEEEeCCCc--eee
Q 047073 223 YYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE--QFR 257 (316)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~--~~~ 257 (316)
..++..+|.+|....++ .+.++|+.+. .|+
T Consensus 250 ~sP~v~~~~vy~~~~~g-----~l~ald~~tG~~~W~ 281 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-----NLVALDLRSGQIVWK 281 (394)
T ss_pred CCcEEECCEEEEEEcCC-----eEEEEECCCCCEEEe
Confidence 34677788888766543 7888888754 454
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.45 E-value=1.2e+02 Score=26.07 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=58.0
Q ss_pred eccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEE
Q 047073 123 SSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVH 202 (316)
Q Consensus 123 ~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy 202 (316)
-..+|--|+..++ .+.+-+|||..+....-=.. .... .+-.+.+.+.-|+-.. .....+.++
T Consensus 25 yN~dGnY~ltcGs--drtvrLWNp~rg~liktYsg----hG~E--VlD~~~s~Dnskf~s~----------GgDk~v~vw 86 (307)
T KOG0316|consen 25 YNVDGNYCLTCGS--DRTVRLWNPLRGALIKTYSG----HGHE--VLDAALSSDNSKFASC----------GGDKAVQVW 86 (307)
T ss_pred EccCCCEEEEcCC--CceEEeecccccceeeeecC----CCce--eeeccccccccccccC----------CCCceEEEE
Confidence 4457777777655 78899999999876541111 1111 1111111122222211 225678889
Q ss_pred EeCCC----ceEecCC-CCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecC
Q 047073 203 TIGTN----TWRNIGD-LPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPG 261 (316)
Q Consensus 203 ~s~t~----~W~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~l 261 (316)
+..|| .|+.-.. .-...+....+|.+.|.+ ...|-.+|-....+..|+.
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf----------D~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF----------DSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccc----------cceeEEEEcccCCCCccch
Confidence 99888 4554321 111111223355555543 3467777777777776655
No 75
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=57.84 E-value=1.9e+02 Score=28.18 Aligned_cols=163 Identities=12% Similarity=0.173 Sum_probs=81.9
Q ss_pred eeeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCC-------CCccCceEEEEEeCCCCCeEEEEEEEeeccccc
Q 047073 120 SLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKR-------KNVATRIRGFGYNHCTNQYKVIQILSYKDQAAI 192 (316)
Q Consensus 120 ~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~-------~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~ 192 (316)
.-+..+||||++-+ . .+.+-.|||-++.....-.... ......+.++.|.... .. ++++
T Consensus 181 v~in~~hgLla~Gt-~--~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--L~-~aVG-------- 246 (703)
T KOG2321|consen 181 VSINEEHGLLACGT-E--DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--LH-VAVG-------- 246 (703)
T ss_pred eeecCccceEEecc-c--CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc--ee-EEee--------
Confidence 34577899998887 5 7899999999988654222211 0111224555554321 11 2222
Q ss_pred CCCCCeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc-eeeEecCCCCccccCCC
Q 047073 193 SSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE-QFRQFPGPPTREYEKCR 271 (316)
Q Consensus 193 ~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~-~~~~i~lPP~~~~~~~~ 271 (316)
.....+.||+.++..---+.+--. .-++ -.|.|+..++ +..|++.|-..- .|..-..-|........
T Consensus 247 -ts~G~v~iyDLRa~~pl~~kdh~~-----e~pi---~~l~~~~~~~---q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~ 314 (703)
T KOG2321|consen 247 -TSTGSVLIYDLRASKPLLVKDHGY-----ELPI---KKLDWQDTDQ---QNKVVSMDKRILKIWDECTGKPMASIEPTS 314 (703)
T ss_pred -ccCCcEEEEEcccCCceeecccCC-----ccce---eeecccccCC---CceEEecchHHhhhcccccCCceeeccccC
Confidence 335678899988775322221100 0011 1456655533 457787775433 23222110100000000
Q ss_pred CccceEEEEECCeEEEEEccCCCeEEEEEEeeCCCCCCe
Q 047073 272 PINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESW 310 (316)
Q Consensus 272 ~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~~~~~~~~W 310 (316)
. -.-.....++-|+++... ...|..+...+-|....|
T Consensus 315 ~-lND~C~~p~sGm~f~Ane-~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 315 D-LNDFCFVPGSGMFFTANE-SSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred C-cCceeeecCCceEEEecC-CCcceeEEccccCCCchh
Confidence 0 111223445556666654 778888887776655567
No 76
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=55.94 E-value=24 Score=33.54 Aligned_cols=114 Identities=9% Similarity=-0.028 Sum_probs=61.3
Q ss_pred EEEcCCCCceEecCCCCCC-------CccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCC
Q 047073 142 SVCNPILGDHLVLPQLKRK-------NVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGD 214 (316)
Q Consensus 142 ~v~NP~T~~~~~lP~~~~~-------~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~ 214 (316)
..=-|.+-.|..+|+-..+ +..+.-..|.+++.++.-.+..-. + +- .....+++|..+.+.|..+..
T Consensus 232 i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW---d-G~--~~l~DFW~Y~v~e~~W~~iN~ 305 (723)
T KOG2437|consen 232 ISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW---D-GT--QDLADFWAYSVKENQWTCINR 305 (723)
T ss_pred hhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc---c-cc--hhHHHHHhhcCCcceeEEeec
Confidence 3345778888888876420 011113444444443322222111 1 11 345667899999999998862
Q ss_pred CC-ceeccCCcceeeC---CeEEEEEecCCC-------CccEEEEEeCCCceeeEecC
Q 047073 215 LP-YVLNQPYYGAFLN---SALHWYAHSHDK-------RTAFMCSFDLGDEQFRQFPG 261 (316)
Q Consensus 215 ~~-~~~~~~~~~v~~~---G~lywl~~~~~~-------~~~~i~~fD~~~~~~~~i~l 261 (316)
-. .+....+.-.+++ -++|.++..-.. .+.-+..||.++..|..+..
T Consensus 306 ~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~ 363 (723)
T KOG2437|consen 306 DTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSE 363 (723)
T ss_pred CCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecc
Confidence 21 1111111112222 256766544211 15678999999999999865
No 77
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=52.91 E-value=70 Score=28.65 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=44.6
Q ss_pred Ccceee-CCeEEEEEe--cCCCC-ccEEEEEeCC-CceeeEe-cCCCCccccCCCCccceEEEEE-CCeEEEEEccCCCe
Q 047073 223 YYGAFL-NSALHWYAH--SHDKR-TAFMCSFDLG-DEQFRQF-PGPPTREYEKCRPINSISVGVS-GGFLYLCDGFLEPN 295 (316)
Q Consensus 223 ~~~v~~-~G~lywl~~--~~~~~-~~~i~~fD~~-~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~ 295 (316)
.++|.. ||.|.+-.. ...+. ...++.|-.. ...|.+- ..||.. +....++|+ +|+|.|+....+..
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~g-------C~~psv~EWe~gkLlM~~~c~~g~ 196 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAG-------CSDPSVVEWEDGKLLMMTACDDGR 196 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT--------EEEEEEEE-TTEEEEEEE-TTS-
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCC-------cceEEEEeccCCeeEEEEecccce
Confidence 335655 787655433 22232 2678888877 6688875 343322 278899999 89998888765666
Q ss_pred EEEEEEeeCCCCCCeee
Q 047073 296 LDIWIMKKYGVKESWTK 312 (316)
Q Consensus 296 ~~vW~l~~~~~~~~W~~ 312 (316)
-.|+.-.|.+ +.|++
T Consensus 197 rrVYeS~DmG--~tWte 211 (310)
T PF13859_consen 197 RRVYESGDMG--TTWTE 211 (310)
T ss_dssp --EEEESSTT--SS-EE
T ss_pred EEEEEEcccc--eehhh
Confidence 7888877654 57986
No 78
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=51.07 E-value=34 Score=18.50 Aligned_cols=24 Identities=4% Similarity=0.041 Sum_probs=17.1
Q ss_pred eeeCCeEEEEEecCCCCccEEEEEeCCCc
Q 047073 226 AFLNSALHWYAHSHDKRTAFMCSFDLGDE 254 (316)
Q Consensus 226 v~~~G~lywl~~~~~~~~~~i~~fD~~~~ 254 (316)
+..+|.+|.-..+ ..+.++|.++.
T Consensus 3 ~~~~~~v~~~~~~-----g~l~a~d~~~G 26 (33)
T smart00564 3 VLSDGTVYVGSTD-----GTLYALDAKTG 26 (33)
T ss_pred EEECCEEEEEcCC-----CEEEEEEcccC
Confidence 4457787776554 48999998765
No 79
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=48.98 E-value=69 Score=27.40 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=39.0
Q ss_pred ccCceEEeeeeccCCceEEEEcCCCCceEec--CCCCCCCccCceEEEEEeCCCCCeEEEE
Q 047073 124 SCNGLICLHEFSYKQDIISVCNPILGDHLVL--PQLKRKNVATRIRGFGYNHCTNQYKVIQ 182 (316)
Q Consensus 124 s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~l--P~~~~~~~~~~~~~~~~d~~~~~~kvv~ 182 (316)
..+|.|.-.. + .+++|-+||.|+.-..+ .++.. ......+++-|+|..++-+||.
T Consensus 36 pa~G~LYgl~-~--~g~lYtIn~~tG~aT~vg~s~~~~-al~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLG-S--TGRLYTINPATGAATPVGASPLTV-ALSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEe-C--CCcEEEEECCCCeEEEeecccccc-cccCceEEEecCcccCcEEEEc
Confidence 4577775554 4 78999999999997776 33332 2333377888889888888774
No 80
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=48.15 E-value=1.6e+02 Score=26.75 Aligned_cols=73 Identities=8% Similarity=-0.039 Sum_probs=44.7
Q ss_pred ceeeCCeEEEEEecCCCCccEEEEEeCCCce--eeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCCeEEEEEEe
Q 047073 225 GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQ--FRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMK 302 (316)
Q Consensus 225 ~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~--~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~ 302 (316)
+++.+|.+|.....+ .|.+||+++.. |+.-.. . .... ........+|+|++-... . +++.|+
T Consensus 64 ~~~~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~-~-~~~~-----~~~~~~~~~G~i~~g~~~-g---~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLL-G-AVAQ-----LSGPILGSDGKIYVGSWD-G---KLYALD 127 (370)
T ss_pred cEeeCCeEEEecCCC-----cEEEEeCCCCcEEecccCc-C-ccee-----ccCceEEeCCeEEEeccc-c---eEEEEE
Confidence 589999999985554 89999999886 755444 2 0000 111223337776655554 2 777777
Q ss_pred eCCCCCCeeeE
Q 047073 303 KYGVKESWTKE 313 (316)
Q Consensus 303 ~~~~~~~W~~~ 313 (316)
...++..|...
T Consensus 128 ~~~G~~~W~~~ 138 (370)
T COG1520 128 ASTGTLVWSRN 138 (370)
T ss_pred CCCCcEEEEEe
Confidence 63335567653
No 81
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=48.00 E-value=2e+02 Score=25.64 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=26.4
Q ss_pred ceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCC
Q 047073 225 GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGP 262 (316)
Q Consensus 225 ~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lP 262 (316)
.+-.+|.+|..+..+ ...|.+|+++.+....+.+|
T Consensus 219 ~vDadG~lw~~a~~~---g~~v~~~~pdG~l~~~i~lP 253 (307)
T COG3386 219 AVDADGNLWVAAVWG---GGRVVRFNPDGKLLGEIKLP 253 (307)
T ss_pred EEeCCCCEEEecccC---CceEEEECCCCcEEEEEECC
Confidence 577788888533332 24899999999999999994
No 82
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=47.65 E-value=2.2e+02 Score=25.84 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=33.7
Q ss_pred CeEEEEEeCCC--ceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc--eeeEecC
Q 047073 197 PQVEVHTIGTN--TWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE--QFRQFPG 261 (316)
Q Consensus 197 ~~~~vy~s~t~--~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~--~~~~i~l 261 (316)
..+..|+..+| .|+.-. .....++..+|.+|....+ ..|.++|..+. .|+.-.+
T Consensus 251 g~l~a~d~~tG~~~W~~~~------~~~~~p~~~~~~vyv~~~~-----G~l~~~d~~tG~~~W~~~~~ 308 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRDA------SSYQGPAVDDNRLYVTDAD-----GVVVALDRRSGSELWKNDEL 308 (377)
T ss_pred CEEEEEECCCCcEEEeecc------CCccCceEeCCEEEEECCC-----CeEEEEECCCCcEEEccccc
Confidence 34666777666 575531 1123356678899987644 38999998765 5654333
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=46.19 E-value=2.4e+02 Score=25.88 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=57.7
Q ss_pred CceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeC
Q 047073 126 NGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIG 205 (316)
Q Consensus 126 ~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~ 205 (316)
+|.|.+.. . .+.++.+|+.||+...-=..+. ...... .+ . +. +|+.. .....+.-++..
T Consensus 120 ~~~v~v~~-~--~g~l~ald~~tG~~~W~~~~~~-~~~ssP-~v-~----~~-~v~v~----------~~~g~l~ald~~ 178 (394)
T PRK11138 120 GGKVYIGS-E--KGQVYALNAEDGEVAWQTKVAG-EALSRP-VV-S----DG-LVLVH----------TSNGMLQALNES 178 (394)
T ss_pred CCEEEEEc-C--CCEEEEEECCCCCCcccccCCC-ceecCC-EE-E----CC-EEEEE----------CCCCEEEEEEcc
Confidence 56666654 3 6789999999988332111111 100000 01 0 11 22221 113457778887
Q ss_pred CC--ceEecCCCCc-eeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc--eee
Q 047073 206 TN--TWRNIGDLPY-VLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE--QFR 257 (316)
Q Consensus 206 t~--~W~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~--~~~ 257 (316)
+| .|+.-...+. .......++..+|.+|.-..+ ..+.++|.++. .|+
T Consensus 179 tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~-----g~v~a~d~~~G~~~W~ 230 (394)
T PRK11138 179 DGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN-----GRVSAVLMEQGQLIWQ 230 (394)
T ss_pred CCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC-----CEEEEEEccCChhhhe
Confidence 77 5877543221 112234577788888876544 37899998876 464
No 84
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=43.26 E-value=1e+02 Score=21.89 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=28.2
Q ss_pred ccEEEEEeCCCceeeEe--cCCCCccccCCCCccceEEEEECCeEEEEEccCCCeEEEEE
Q 047073 243 TAFMCSFDLGDEQFRQF--PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWI 300 (316)
Q Consensus 243 ~~~i~~fD~~~~~~~~i--~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~ 300 (316)
.+.++.||+.+.+.+.+ .| .. + ....|..-+..|.+........+..|.
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L-~f-p-------NGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGL-YF-P-------NGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEE-SS-E-------EEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CcCEEEEECCCCeEEEehhCC-Cc-c-------CeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 57899999999998766 33 11 1 222332223346666665455666663
No 85
>PTZ00334 trans-sialidase; Provisional
Probab=43.20 E-value=1.8e+02 Score=29.69 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=50.6
Q ss_pred Ccceee-CCeEEEEEec--CCCCccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEEC-CeEEEEEccCCCeEE
Q 047073 223 YYGAFL-NSALHWYAHS--HDKRTAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSG-GFLYLCDGFLEPNLD 297 (316)
Q Consensus 223 ~~~v~~-~G~lywl~~~--~~~~~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~-G~L~lv~~~~~~~~~ 297 (316)
..+|.. ||.|-+-... ..+....++.|-.++..|.+- ..||... ....++|++ |+|.|+....+..-.
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC-------~~P~I~EWe~gkLlM~t~C~dG~Rr 335 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGC-------SDPSVVEWKEGKLMMMTACDDGRRR 335 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCC-------CCCEEEEEcCCeEEEEEEeCCCCEE
Confidence 335555 6776554322 122245678887777778654 2333322 677899996 999887766566668
Q ss_pred EEEEeeCCCCCCeee
Q 047073 298 IWIMKKYGVKESWTK 312 (316)
Q Consensus 298 vW~l~~~~~~~~W~~ 312 (316)
|+.-.|.+ ..|++
T Consensus 336 VYES~DmG--~tWtE 348 (780)
T PTZ00334 336 VYESGDKG--DSWTE 348 (780)
T ss_pred EEEECCCC--CChhh
Confidence 88877654 46875
No 86
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=42.82 E-value=2.4e+02 Score=24.95 Aligned_cols=96 Identities=7% Similarity=-0.089 Sum_probs=45.3
Q ss_pred CeEEEEEeC-CCceEecCCCCceeccCCcceee--CCeEEEEEecCCCCccEEEEEeCCCc-ee-eEecCCCCccccCCC
Q 047073 197 PQVEVHTIG-TNTWRNIGDLPYVLNQPYYGAFL--NSALHWYAHSHDKRTAFMCSFDLGDE-QF-RQFPGPPTREYEKCR 271 (316)
Q Consensus 197 ~~~~vy~s~-t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~~-~~-~~i~lPP~~~~~~~~ 271 (316)
..+.+|+.. ++.+..+...+... ....+.+ +|...+.+... ...|.+||++++ .. ..+..-+....
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~--~p~~i~~~~~g~~l~v~~~~---~~~v~v~~~~~~g~~~~~~~~~~~~~~---- 127 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPG--SPTHISTDHQGRFLFSASYN---ANCVSVSPLDKDGIPVAPIQIIEGLEG---- 127 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCC--CceEEEECCCCCEEEEEEcC---CCeEEEEEECCCCCCCCceeeccCCCc----
Confidence 556677765 56676544322111 1112333 57766655544 358888988642 11 12211011100
Q ss_pred CccceEEEEECCeEEEEEccCCCeEEEEEEee
Q 047073 272 PINSISVGVSGGFLYLCDGFLEPNLDIWIMKK 303 (316)
Q Consensus 272 ~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~~ 303 (316)
.......-+|+..++....+..+.||-++.
T Consensus 128 --~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 128 --CHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred --ccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 011112225654444444467888888754
No 87
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=42.70 E-value=2.5e+02 Score=25.14 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=48.8
Q ss_pred cceeeC-CeEEEEEecCCC--C-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE-CCeEEEEEccC-CCeEE
Q 047073 224 YGAFLN-SALHWYAHSHDK--R-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS-GGFLYLCDGFL-EPNLD 297 (316)
Q Consensus 224 ~~v~~~-G~lywl~~~~~~--~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~-~~~~~ 297 (316)
.++.+. |.+......... . ...++..|=..++|+....++.... .....++++ +|+|.++.... .....
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~-----~~e~~i~el~dG~l~~~~R~~~~~~~~ 224 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGG-----CSECSVVELSDGKLYMYTRDNSGGRRP 224 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCC-----CcCCEEEEecCCEEEEEEeeCCCCcEE
Confidence 356664 877665443221 1 3445555656789987655232011 144578888 89998877664 35565
Q ss_pred EEEEeeCCCCCCeeeEE
Q 047073 298 IWIMKKYGVKESWTKEF 314 (316)
Q Consensus 298 vW~l~~~~~~~~W~~~~ 314 (316)
+..-.|. +..|+...
T Consensus 225 ~~~S~D~--G~tWs~~~ 239 (351)
T cd00260 225 VYESRDM--GTTWTEAL 239 (351)
T ss_pred EEEEcCC--CcCcccCc
Confidence 6655553 35798753
No 88
>PF15408 PH_7: Pleckstrin homology domain
Probab=42.39 E-value=9.2 Score=26.80 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=20.1
Q ss_pred ccccccccccchhhhhhcCCHHHHH
Q 047073 56 IKTILQIKCVCKTWHSLCSDPYFAK 80 (316)
Q Consensus 56 ~~sl~r~r~VcK~W~sli~s~~F~~ 80 (316)
++..+-.+-|||+|-..+.+|+|+-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 3445667789999999999999863
No 89
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=41.71 E-value=19 Score=32.33 Aligned_cols=39 Identities=23% Similarity=0.507 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHHHHhcCC--------ccccccccccchhhhhhcCC
Q 047073 37 VSMEDLPLPILVDVFSRLP--------IKTILQIKCVCKTWHSLCSD 75 (316)
Q Consensus 37 ~~~~~LP~dll~~IL~rLP--------~~sl~r~r~VcK~W~sli~s 75 (316)
..++.||.++|.+|+.|.. -+++..+..||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4677899999999999886 23578999999999997653
No 90
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=39.23 E-value=1e+02 Score=27.17 Aligned_cols=75 Identities=8% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEEEEEeecccccCCCCCeEEEEEeCCCceEecC-----CCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc
Q 047073 180 VIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIG-----DLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE 254 (316)
Q Consensus 180 vv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~-----~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~ 254 (316)
|++-+.....+. -.+..+.+|+..+.+|.... ...........-+++.|.|-.-... ...+..||.++.
T Consensus 1 v~VGG~F~~aGs--L~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~----~~~la~yd~~~~ 74 (281)
T PF12768_consen 1 VYVGGSFTSAGS--LPCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTN----SSNLATYDFKNQ 74 (281)
T ss_pred CEEeeecCCCCC--cCCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCC----ceeEEEEecCCC
Q ss_pred eeeEec
Q 047073 255 QFRQFP 260 (316)
Q Consensus 255 ~~~~i~ 260 (316)
+|..+.
T Consensus 75 ~w~~~~ 80 (281)
T PF12768_consen 75 TWSSLG 80 (281)
T ss_pred eeeecC
No 91
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=38.30 E-value=2.8e+02 Score=26.98 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=41.6
Q ss_pred ccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEE
Q 047073 124 SCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHT 203 (316)
Q Consensus 124 s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~ 203 (316)
..+|-+++++.+ +.++.||||...+... .+.. .+....+..-|-|.+++=.|+.. .....+.+|+
T Consensus 59 n~dG~lL~SGSD--D~r~ivWd~~~~Kllh--sI~T-gHtaNIFsvKFvP~tnnriv~sg----------AgDk~i~lfd 123 (758)
T KOG1310|consen 59 NADGELLASGSD--DTRLIVWDPFEYKLLH--SIST-GHTANIFSVKFVPYTNNRIVLSG----------AGDKLIKLFD 123 (758)
T ss_pred cCCCCEEeecCC--cceEEeecchhcceee--eeec-ccccceeEEeeeccCCCeEEEec----------cCcceEEEEe
Confidence 357888888744 7899999999665433 2222 23333666677787766555543 2245677776
Q ss_pred eC
Q 047073 204 IG 205 (316)
Q Consensus 204 s~ 205 (316)
..
T Consensus 124 l~ 125 (758)
T KOG1310|consen 124 LD 125 (758)
T ss_pred cc
Confidence 54
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=37.47 E-value=5.4e+02 Score=27.52 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=80.8
Q ss_pred cCceEEeeeeccCCceEEEEcCCCCceEecCCCCC-C---------CccCceEEEEEeCCCCCeEEEEEEEeecccccCC
Q 047073 125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKR-K---------NVATRIRGFGYNHCTNQYKVIQILSYKDQAAISS 194 (316)
Q Consensus 125 ~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~-~---------~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~ 194 (316)
.+|.+.+.+.. ..+++++|+.++....+-.... . .......++.+++..+ + ++... .
T Consensus 693 ~~g~LyVad~~--~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~-LYVAD---------s 759 (1057)
T PLN02919 693 VNEKVYIAMAG--QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-E-LYIAD---------S 759 (1057)
T ss_pred CCCeEEEEECC--CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC-E-EEEEE---------C
Confidence 36666666533 6788999998887654332110 0 0011245666666433 2 22221 2
Q ss_pred CCCeEEEEEeCCCceEecC--CC--Cce--------------eccCCccee--eCCeEEEEEecCCCCccEEEEEeCCCc
Q 047073 195 SKPQVEVHTIGTNTWRNIG--DL--PYV--------------LNQPYYGAF--LNSALHWYAHSHDKRTAFMCSFDLGDE 254 (316)
Q Consensus 195 ~~~~~~vy~s~t~~W~~~~--~~--~~~--------------~~~~~~~v~--~~G~lywl~~~~~~~~~~i~~fD~~~~ 254 (316)
....+.+|+..++.-+.+. .. +.. ....-.++. -+|.+|..... ...|..||+++.
T Consensus 760 ~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg 835 (1057)
T PLN02919 760 ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATK 835 (1057)
T ss_pred CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCC
Confidence 2456778887765432111 00 000 000111333 46787766554 468999999988
Q ss_pred eeeEecCCCC--ccccCC--CCc-cceEEEE-ECCeEEEEEccCCCeEEEEEEee
Q 047073 255 QFRQFPGPPT--REYEKC--RPI-NSISVGV-SGGFLYLCDGFLEPNLDIWIMKK 303 (316)
Q Consensus 255 ~~~~i~lPP~--~~~~~~--~~~-~~~~L~~-~~G~L~lv~~~~~~~~~vW~l~~ 303 (316)
....+..-.. ..+... ... ....++. -+|+|++.... +..+.+|-++.
T Consensus 836 ~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-Nn~Irvid~~~ 889 (1057)
T PLN02919 836 RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-NSLIRYLDLNK 889 (1057)
T ss_pred eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-CCEEEEEECCC
Confidence 7665522010 000000 000 1122333 36888777765 78899998754
No 93
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=36.49 E-value=3e+02 Score=24.29 Aligned_cols=95 Identities=8% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCeEEEEEeCC-CceEecCCCCceeccCCcceee--CCe-EEEEEecCCCCccEEEEEeCC-CceeeEecCCCCccccCC
Q 047073 196 KPQVEVHTIGT-NTWRNIGDLPYVLNQPYYGAFL--NSA-LHWYAHSHDKRTAFMCSFDLG-DEQFRQFPGPPTREYEKC 270 (316)
Q Consensus 196 ~~~~~vy~s~t-~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~i~~fD~~-~~~~~~i~lPP~~~~~~~ 270 (316)
...+.+|+..+ +.++.+...+.. ....++.+ +|. +|..... ...|.+|++. +..+..+.-.+...
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~---- 80 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPG---- 80 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCC----
Confidence 46678888753 577665433221 11123333 565 4554332 4578888886 44565542102111
Q ss_pred CCccceEEEEE-CCeEEEEEccCCCeEEEEEEee
Q 047073 271 RPINSISVGVS-GGFLYLCDGFLEPNLDIWIMKK 303 (316)
Q Consensus 271 ~~~~~~~L~~~-~G~L~lv~~~~~~~~~vW~l~~ 303 (316)
....++.. +|+..++....+..+.+|-+++
T Consensus 81 ---~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 81 ---SPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred ---CceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 11133333 5654444433367888888764
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=35.87 E-value=2.7e+02 Score=23.54 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=46.9
Q ss_pred CceEEEEcCCCCceEe-cCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCce-EecCCC
Q 047073 138 QDIISVCNPILGDHLV-LPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTW-RNIGDL 215 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W-~~~~~~ 215 (316)
...+.++|+.+++... ++.... ...+.+++..+ +++... .....+.+|+..++.- ..++.
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~--~l~~~~---------~~~~~l~~~d~~~~~~~~~~~~- 113 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPD------PELFALHPNGK--ILYIAN---------EDDNLVTVIDIETRKVLAEIPV- 113 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCC------ccEEEECCCCC--EEEEEc---------CCCCeEEEEECCCCeEEeEeeC-
Confidence 6789999999987654 443211 22445555432 222221 1134688888776531 11211
Q ss_pred CceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCcee
Q 047073 216 PYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQF 256 (316)
Q Consensus 216 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~ 256 (316)
......-.+.-+|.+.+.+... ...+..+|+.+...
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~~---~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSET---TNMAHFIDTKTYEI 149 (300)
T ss_pred --CCCcceEEECCCCCEEEEEecC---CCeEEEEeCCCCeE
Confidence 0000011222357666655542 22466678876544
No 95
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=35.83 E-value=3e+02 Score=24.04 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred CceEEeeeeccCCceEEEEcCCCCc-eEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEe
Q 047073 126 NGLICLHEFSYKQDIISVCNPILGD-HLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTI 204 (316)
Q Consensus 126 ~Gll~~~~~~~~~~~~~v~NP~T~~-~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s 204 (316)
+|.|+.+.+-+..+.+..+|+.|++ ....+-++. .+|=|..-..+..-.+. =....+.+|+.
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~------~FgEGit~~~d~l~qLT-----------Wk~~~~f~yd~ 117 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR------YFGEGITILGDKLYQLT-----------WKEGTGFVYDP 117 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--------EEEEEEETTEEEEEE-----------SSSSEEEEEET
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc------ccceeEEEECCEEEEEE-----------ecCCeEEEEcc
Q ss_pred CCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCC
Q 047073 205 GTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGD 253 (316)
Q Consensus 205 ~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~ 253 (316)
.+ .+.+...+.. ....++..+|.-.|++.. ...|.-+|+++
T Consensus 118 ~t--l~~~~~~~y~--~EGWGLt~dg~~Li~SDG----S~~L~~~dP~~ 158 (264)
T PF05096_consen 118 NT--LKKIGTFPYP--GEGWGLTSDGKRLIMSDG----SSRLYFLDPET 158 (264)
T ss_dssp TT--TEEEEEEE-S--SS--EEEECSSCEEEE-S----SSEEEEE-TTT
T ss_pred cc--ceEEEEEecC--CcceEEEcCCCEEEEECC----ccceEEECCcc
No 96
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=35.64 E-value=1.1e+02 Score=21.00 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=8.6
Q ss_pred EEEEeCCCCCeEEEEE
Q 047073 168 GFGYNHCTNQYKVIQI 183 (316)
Q Consensus 168 ~~~~d~~~~~~kvv~~ 183 (316)
-.-||+.++.|.=|.+
T Consensus 31 k~lfDPETGqYVeV~i 46 (75)
T PF15232_consen 31 KTLFDPETGQYVEVLI 46 (75)
T ss_pred eeeecCCCCcEEEEeC
Confidence 3445666666555544
No 97
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.71 E-value=4.4e+02 Score=25.64 Aligned_cols=81 Identities=5% Similarity=-0.008 Sum_probs=40.8
Q ss_pred CCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecC--CCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCC
Q 047073 175 TNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIG--DLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLG 252 (316)
Q Consensus 175 ~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~--~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~ 252 (316)
++.|.|..++..-.... .......+|....+.=+.+. ..|..-.......--+.....+++. ++.|+.||..
T Consensus 216 ~~~~qi~tVE~s~s~~g--~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~----DgSiiLyD~~ 289 (545)
T PF11768_consen 216 NQPYQIHTVEQSISVKG--EPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCE----DGSIILYDTT 289 (545)
T ss_pred CCCcEEEEEEEecCCCC--CceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEec----CCeEEEEEcC
Confidence 35566666655432222 34666677776655433321 1111100000011123345556666 5689999999
Q ss_pred CceeeEecC
Q 047073 253 DEQFRQFPG 261 (316)
Q Consensus 253 ~~~~~~i~l 261 (316)
++.-..+..
T Consensus 290 ~~~t~~~ka 298 (545)
T PF11768_consen 290 RGVTLLAKA 298 (545)
T ss_pred CCeeeeeee
Confidence 886666644
No 98
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=33.16 E-value=1.7e+02 Score=26.37 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=37.9
Q ss_pred cceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073 224 YGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSGGFLYLCDGF 291 (316)
Q Consensus 224 ~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~ 291 (316)
.+-+.+|.+|.+... ...+..+|+++.++..+ .+ |.... -|+-+ |.+.+|..+
T Consensus 207 SPRWhdgrLwvldsg----tGev~~vD~~~G~~e~Va~v-pG~~r---------GL~f~-G~llvVgmS 260 (335)
T TIGR03032 207 SPRWYQGKLWLLNSG----RGELGYVDPQAGKFQPVAFL-PGFTR---------GLAFA-GDFAFVGLS 260 (335)
T ss_pred CCcEeCCeEEEEECC----CCEEEEEcCCCCcEEEEEEC-CCCCc---------cccee-CCEEEEEec
Confidence 367789999998877 57899999998988887 77 44331 12222 777777754
No 99
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=32.98 E-value=1.6e+02 Score=21.39 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEE
Q 047073 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILS 185 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~ 185 (316)
..+++..||.+++|...- .....+.+..|+..+.|.|+....
T Consensus 8 ~a~v~~~~~~~~~W~~~~------~~~g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 8 VAQVYTADPSTGKWVPAS------GGTGAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEEEECCCCCceEECC------CCeEEEEEEEECCCCEEEEEEEec
Confidence 568999999999998631 112267777888888888887653
No 100
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=31.78 E-value=1.6e+02 Score=21.67 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCc-eEecCCCCCCCccCceEEEEEeCCCCCeEEEEEE
Q 047073 138 QDIISVCNPILGD-HLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQIL 184 (316)
Q Consensus 138 ~~~~~v~NP~T~~-~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~ 184 (316)
.-+++..||-+++ |... .. ...+.+..|...+.|.|..+.
T Consensus 15 vA~v~~~~p~~~~~W~~~-~~------~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 15 VAQVYQADPDTKRQWSPV-KG------TGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEEETTTSESEEES-SS------EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEEcCCCCcEeeC-Ce------EEEEEEEEECCCCEEEEEEEE
Confidence 5689999999988 9875 11 125566778877788877765
No 101
>PLN02772 guanylate kinase
Probab=31.63 E-value=2.1e+02 Score=26.64 Aligned_cols=45 Identities=11% Similarity=-0.058 Sum_probs=28.8
Q ss_pred CCCeEEEEEeCCCceEecC---CCCceeccCCcceeeCCeEEEEEecC
Q 047073 195 SKPQVEVHTIGTNTWRNIG---DLPYVLNQPYYGAFLNSALHWYAHSH 239 (316)
Q Consensus 195 ~~~~~~vy~s~t~~W~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~ 239 (316)
....+++|+..++.|.... ..|.+.......++-++.++.+....
T Consensus 49 ~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 49 LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 5789999999999998754 33333322222344467788776543
No 102
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=30.76 E-value=2.3e+02 Score=21.20 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=52.3
Q ss_pred CCCeEEEEEeCCCceEecCCC--CceeccCCcceeeCCeEEEEEecCCCC--ccEEEEE-eCCCceeeEe--cCCCCccc
Q 047073 195 SKPQVEVHTIGTNTWRNIGDL--PYVLNQPYYGAFLNSALHWYAHSHDKR--TAFMCSF-DLGDEQFRQF--PGPPTREY 267 (316)
Q Consensus 195 ~~~~~~vy~s~t~~W~~~~~~--~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~f-D~~~~~~~~i--~lPP~~~~ 267 (316)
....+-.|+.++..|+.+..+ +........=+-.+|+|-.+....... ...|-++ |.++++|+.. .+|+....
T Consensus 18 ~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~~~ 97 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPSWQH 97 (129)
T ss_pred CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChHHhc
Confidence 467777888999999888654 111111222466789988877765431 2344444 6778899765 46332222
Q ss_pred cCCCCccceEEEEECCeEEEE
Q 047073 268 EKCRPINSISVGVSGGFLYLC 288 (316)
Q Consensus 268 ~~~~~~~~~~L~~~~G~L~lv 288 (316)
..........-+.-+|.+.++
T Consensus 98 ~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 98 FVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccCCcEEEEEEEcCCCEEEEE
Confidence 110000222333446788777
No 103
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=30.66 E-value=88 Score=17.67 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=16.7
Q ss_pred eCCeEEEEEecCCCCccEEEEEeCCCc
Q 047073 228 LNSALHWYAHSHDKRTAFMCSFDLGDE 254 (316)
Q Consensus 228 ~~G~lywl~~~~~~~~~~i~~fD~~~~ 254 (316)
.++.+||.... ...|.+.++.+.
T Consensus 19 ~~~~lYw~D~~----~~~I~~~~~~g~ 41 (43)
T smart00135 19 IEGRLYWTDWG----LDVIEVANLDGT 41 (43)
T ss_pred cCCEEEEEeCC----CCEEEEEeCCCC
Confidence 46789998777 457888777653
No 104
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=30.42 E-value=4.1e+02 Score=23.99 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=56.3
Q ss_pred cCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEe
Q 047073 125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTI 204 (316)
Q Consensus 125 ~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s 204 (316)
.+|.+.+.. . .+.++.+|+.||+...--.... ...... .+ .+. +|+.. .....+..++.
T Consensus 104 ~~~~v~v~~-~--~g~l~ald~~tG~~~W~~~~~~-~~~~~p-~v-----~~~-~v~v~----------~~~g~l~a~d~ 162 (377)
T TIGR03300 104 DGGLVFVGT-E--KGEVIALDAEDGKELWRAKLSS-EVLSPP-LV-----ANG-LVVVR----------TNDGRLTALDA 162 (377)
T ss_pred cCCEEEEEc-C--CCEEEEEECCCCcEeeeeccCc-eeecCC-EE-----ECC-EEEEE----------CCCCeEEEEEc
Confidence 367666655 3 6789999999988443111111 000000 00 112 22221 11345677787
Q ss_pred CCC--ceEecCCCC-ceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc--eee
Q 047073 205 GTN--TWRNIGDLP-YVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE--QFR 257 (316)
Q Consensus 205 ~t~--~W~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~--~~~ 257 (316)
.+| .|+.-...+ ........++..+|.+|.-... ..+.++|+.+. .|+
T Consensus 163 ~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~-----g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 163 ATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAG-----GKLVALDLQTGQPLWE 215 (377)
T ss_pred CCCceeeEEccCCCceeecCCCCCEEECCEEEEECCC-----CEEEEEEccCCCEeee
Confidence 776 587543222 1222234467788877654433 38999998765 454
No 105
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=29.69 E-value=3.4e+02 Score=26.28 Aligned_cols=32 Identities=3% Similarity=-0.063 Sum_probs=24.0
Q ss_pred CcceeeCCeEEEEEecCCCCccEEEEEeCCCc--eeeEe
Q 047073 223 YYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE--QFRQF 259 (316)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~--~~~~i 259 (316)
..+++.+|.+|.....+ .|.++|..+. .|+.-
T Consensus 63 stPvv~~g~vyv~s~~g-----~v~AlDa~TGk~lW~~~ 96 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-----RVYALDAKTGKELWKYD 96 (527)
T ss_pred cCCEEECCEEEEECCCC-----cEEEEECCCCceeeEec
Confidence 45788999999876553 7999998764 66643
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.56 E-value=2.8e+02 Score=26.23 Aligned_cols=108 Identities=11% Similarity=0.157 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEe-cCCCCceeccCCcceeeCCeEEEEEecCCCCcc
Q 047073 166 IRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRN-IGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTA 244 (316)
Q Consensus 166 ~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~ 244 (316)
+..+.+.|.. .|.++... ..++++|++.+.+=+. +..+.... +.-.+.-||.|...+.. .+
T Consensus 29 vssl~fsp~~-P~d~aVt~-----------S~rvqly~~~~~~~~k~~srFk~~v--~s~~fR~DG~LlaaGD~----sG 90 (487)
T KOG0310|consen 29 VSSLCFSPKH-PYDFAVTS-----------SVRVQLYSSVTRSVRKTFSRFKDVV--YSVDFRSDGRLLAAGDE----SG 90 (487)
T ss_pred ceeEecCCCC-CCceEEec-----------ccEEEEEecchhhhhhhHHhhccce--eEEEeecCCeEEEccCC----cC
Confidence 5666666642 24434332 5889999988764322 22221111 11134557999988777 56
Q ss_pred EEEEEeCCCcee-eEe---cCCCCccccCCCCccceEEEEECCeEEEEEccCCCeEEEEEEe
Q 047073 245 FMCSFDLGDEQF-RQF---PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMK 302 (316)
Q Consensus 245 ~i~~fD~~~~~~-~~i---~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~ 302 (316)
.|-+||+.+... +.+ +. |. ...+....++.+.+...+ +....+|.+.
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~a-pv---------~~~~f~~~d~t~l~s~sD-d~v~k~~d~s 141 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQA-PV---------HVTKFSPQDNTMLVSGSD-DKVVKYWDLS 141 (487)
T ss_pred cEEEeccccHHHHHHHhhccC-ce---------eEEEecccCCeEEEecCC-CceEEEEEcC
Confidence 899999665322 222 22 21 222333345555544443 6677777664
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=29.38 E-value=4.9e+02 Score=24.54 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=53.9
Q ss_pred eeeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073 120 SLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV 199 (316)
Q Consensus 120 ~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~ 199 (316)
.+-.+-||.-+....+ ++.+.+||.---+ ..+..+. .-...+..+.+|.+ +.|-++. .....+
T Consensus 394 ~i~FsENGY~Lat~ad--d~~V~lwDLRKl~--n~kt~~l-~~~~~v~s~~fD~S-Gt~L~~~-----------g~~l~V 456 (506)
T KOG0289|consen 394 AISFSENGYWLATAAD--DGSVKLWDLRKLK--NFKTIQL-DEKKEVNSLSFDQS-GTYLGIA-----------GSDLQV 456 (506)
T ss_pred EEEeccCceEEEEEec--CCeEEEEEehhhc--ccceeec-cccccceeEEEcCC-CCeEEee-----------cceeEE
Confidence 3556667775555423 5557777753322 2222222 11113566777664 3454443 225778
Q ss_pred EEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEe
Q 047073 200 EVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAH 237 (316)
Q Consensus 200 ~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 237 (316)
.+|...+.+|+.+...+... ....+|.++..--+++.
T Consensus 457 y~~~k~~k~W~~~~~~~~~s-g~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHS-GLSTGVRFGEHAQYLAS 493 (506)
T ss_pred EEEecccccceeeehhhhcc-cccceeeecccceEEee
Confidence 88888999999987543221 23446766655433333
No 108
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=28.89 E-value=32 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHhcCCccccc
Q 047073 37 VSMEDLPLPILVDVFSRLPIKTIL 60 (316)
Q Consensus 37 ~~~~~LP~dll~~IL~rLP~~sl~ 60 (316)
..|..||.|+-..||..|+-++|.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 678999999999999999988765
No 109
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=28.89 E-value=4.3e+02 Score=23.77 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=49.7
Q ss_pred CCCCeEEEEEeCCCceEecCCCCceeccCCccee--eCCeEEEEEecCCCCccEEEEEeCCCcee-eEecCCCCccccCC
Q 047073 194 SSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAF--LNSALHWYAHSHDKRTAFMCSFDLGDEQF-RQFPGPPTREYEKC 270 (316)
Q Consensus 194 ~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~i~~fD~~~~~~-~~i~lPP~~~~~~~ 270 (316)
..+....+|+..|-+-=...++.......-..|. -+|.+|.-+.. .+.|-.+|=-.+.. +.|.- .. .+.
T Consensus 235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~-AH-~gs-- 306 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGN-AH-GGS-- 306 (430)
T ss_pred cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHh-hc-CCc--
Confidence 3467888999887643222222222222222232 26889988877 45677777444433 32211 11 110
Q ss_pred CCccceEE-EEECCeEEEEEccCCCeEEEEEEe
Q 047073 271 RPINSISV-GVSGGFLYLCDGFLEPNLDIWIMK 302 (316)
Q Consensus 271 ~~~~~~~L-~~~~G~L~lv~~~~~~~~~vW~l~ 302 (316)
.-... -.-+|+-.+-... +..+.+|.+-
T Consensus 307 ---evcSa~Ftkn~kyiLsSG~-DS~vkLWEi~ 335 (430)
T KOG0640|consen 307 ---EVCSAVFTKNGKYILSSGK-DSTVKLWEIS 335 (430)
T ss_pred ---eeeeEEEccCCeEEeecCC-cceeeeeeec
Confidence 11122 2235665555554 7889999874
No 110
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=28.15 E-value=5.6e+02 Score=24.84 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CceEEeeeeccCCceEEEEcCCCCc--eEecCCCCCCCccC------ceEEEEEeCCCCCeEEEEEEEeecccccCCCCC
Q 047073 126 NGLICLHEFSYKQDIISVCNPILGD--HLVLPQLKRKNVAT------RIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP 197 (316)
Q Consensus 126 ~Gll~~~~~~~~~~~~~v~NP~T~~--~~~lP~~~~~~~~~------~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~ 197 (316)
+|.|.+.. . ...++-+|..||+ |+.-+..+. .... ...+..+.. . +|+.. ....
T Consensus 69 ~g~vyv~s-~--~g~v~AlDa~TGk~lW~~~~~~~~-~~~~~~~~~~~~rg~av~~---~-~v~v~----------t~dg 130 (527)
T TIGR03075 69 DGVMYVTT-S--YSRVYALDAKTGKELWKYDPKLPD-DVIPVMCCDVVNRGVALYD---G-KVFFG----------TLDA 130 (527)
T ss_pred CCEEEEEC-C--CCcEEEEECCCCceeeEecCCCCc-ccccccccccccccceEEC---C-EEEEE----------cCCC
Confidence 78887766 4 5678889999987 443332221 1100 000111111 1 23321 1134
Q ss_pred eEEEEEeCCC--ceEecC-CCCceeccCCcceeeCCeEEEEEecCCC-CccEEEEEeCCCc--eeeEecCC
Q 047073 198 QVEVHTIGTN--TWRNIG-DLPYVLNQPYYGAFLNSALHWYAHSHDK-RTAFMCSFDLGDE--QFRQFPGP 262 (316)
Q Consensus 198 ~~~vy~s~t~--~W~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~i~~fD~~~~--~~~~i~lP 262 (316)
.+.-++..|| .|+.-. ...........++..+|.+|.-...... .+..|.+||.+|. .|+.-..|
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 5666677777 686532 2211111234578889988875432211 1458999999876 56655553
No 111
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=28.09 E-value=2.5e+02 Score=25.76 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=30.9
Q ss_pred ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE--CCeEEEEEccCCCeEEEEEEee
Q 047073 243 TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS--GGFLYLCDGFLEPNLDIWIMKK 303 (316)
Q Consensus 243 ~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~--~G~L~lv~~~~~~~~~vW~l~~ 303 (316)
...|+..|+++++-. +++|... ....+... +|...+.... +.++.||....
T Consensus 217 sssi~iWdpdtg~~~--pL~~~gl-------gg~slLkwSPdgd~lfaAt~-davfrlw~e~q 269 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKI--PLIPKGL-------GGFSLLKWSPDGDVLFAATC-DAVFRLWQENQ 269 (445)
T ss_pred cceEEEEcCCCCCcc--cccccCC-------CceeeEEEcCCCCEEEEecc-cceeeeehhcc
Confidence 568999999998765 4533333 23333332 5554444443 68999996644
No 112
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.38 E-value=36 Score=26.31 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=14.6
Q ss_pred eeeCCeEEEEEecCCCCccEEEEEeC
Q 047073 226 AFLNSALHWYAHSHDKRTAFMCSFDL 251 (316)
Q Consensus 226 v~~~G~lywl~~~~~~~~~~i~~fD~ 251 (316)
+.-+|+|||+-....-.+-.|+.|+.
T Consensus 44 ll~GGSlYWVikg~i~~RQ~Il~i~~ 69 (137)
T PF07370_consen 44 LLDGGSLYWVIKGQIQCRQRILDIEE 69 (137)
T ss_pred hccCCcEEEEECCEEEEeeeeeeeeE
Confidence 44589999987653111223444543
No 113
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.02 E-value=5.3e+02 Score=24.19 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=44.6
Q ss_pred CceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceee-EecCCCCccccCCCCccceEEEEECCeE
Q 047073 207 NTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFR-QFPGPPTREYEKCRPINSISVGVSGGFL 285 (316)
Q Consensus 207 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~-~i~lPP~~~~~~~~~~~~~~L~~~~G~L 285 (316)
+.|+....+... .-.+.-||.--.+... ...|..|+.++..-+ .+.. .... ... -..-+|++
T Consensus 347 ~~W~gvr~~~v~----dlait~Dgk~vl~v~~----d~~i~l~~~e~~~dr~lise-~~~i-------ts~-~iS~d~k~ 409 (519)
T KOG0293|consen 347 GNWEGVRDPKVH----DLAITYDGKYVLLVTV----DKKIRLYNREARVDRGLISE-EQPI-------TSF-SISKDGKL 409 (519)
T ss_pred hcccccccceeE----EEEEcCCCcEEEEEec----ccceeeechhhhhhhccccc-cCce-------eEE-EEcCCCcE
Confidence 378776542211 1134456664444333 235677776655443 3333 1111 222 23347899
Q ss_pred EEEEccCCCeEEEEEEeeC
Q 047073 286 YLCDGFLEPNLDIWIMKKY 304 (316)
Q Consensus 286 ~lv~~~~~~~~~vW~l~~~ 304 (316)
+++... +.++++|-++|.
T Consensus 410 ~LvnL~-~qei~LWDl~e~ 427 (519)
T KOG0293|consen 410 ALVNLQ-DQEIHLWDLEEN 427 (519)
T ss_pred EEEEcc-cCeeEEeecchh
Confidence 999996 899999999853
No 114
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=26.08 E-value=2.9e+02 Score=23.82 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=52.3
Q ss_pred ceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc-eeeEecCCCCccc-----cCCCCccceEEEEE
Q 047073 208 TWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE-QFRQFPGPPTREY-----EKCRPINSISVGVS 281 (316)
Q Consensus 208 ~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~-~~~~i~lPP~~~~-----~~~~~~~~~~L~~~ 281 (316)
.|...=..|..+. ...-|+.||.+|.-... ...|+.||+.++ +.....+ |.... ..+.+.....+++.
T Consensus 57 ~~~~~~~lp~~~~-gTg~VVynGs~yynk~~----t~~ivky~l~~~~~~~~~~l-p~a~y~~~~~y~~~g~sdiD~avD 130 (249)
T KOG3545|consen 57 RKAEKYRLPYSWD-GTGHVVYNGSLYYNKAG----TRNIIKYDLETRTVAGSAAL-PYAGYHNPSPYYWGGHSDIDLAVD 130 (249)
T ss_pred CcceEEeCCCCcc-ccceEEEcceEEeeccC----CcceEEEEeecceeeeeeec-cccccCCCcccccCCCccccceec
Confidence 4444434555443 23368899999998755 568999999985 4444456 32221 11223456777777
Q ss_pred CCeEEEEEccC--CCeEEEEEEe
Q 047073 282 GGFLYLCDGFL--EPNLDIWIMK 302 (316)
Q Consensus 282 ~G~L~lv~~~~--~~~~~vW~l~ 302 (316)
+.-|-++.... ...+.|=.|+
T Consensus 131 E~GLWviYat~~~~g~iv~skLd 153 (249)
T KOG3545|consen 131 ENGLWVIYATPENAGTIVLSKLD 153 (249)
T ss_pred ccceeEEecccccCCcEEeeccC
Confidence 77776666543 2444445554
No 115
>PRK04792 tolB translocation protein TolB; Provisional
Probab=25.29 E-value=5.8e+02 Score=24.01 Aligned_cols=137 Identities=10% Similarity=0.049 Sum_probs=69.7
Q ss_pred CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCc
Q 047073 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPY 217 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~ 217 (316)
..+++++|..|++...+...+. . .....+.|.. ++ ++.... . .....+.+++..++..+.+.....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g--~---~~~~~wSPDG-~~-La~~~~--~-----~g~~~Iy~~dl~tg~~~~lt~~~~ 306 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPG--I---NGAPRFSPDG-KK-LALVLS--K-----DGQPEIYVVDIATKALTRITRHRA 306 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCC--C---cCCeeECCCC-CE-EEEEEe--C-----CCCeEEEEEECCCCCeEECccCCC
Confidence 5589999999998777654432 1 1133444432 22 222211 1 123567777888888776653211
Q ss_pred eeccCCcc-eeeCCe-EEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCe-EEEEEccCCC
Q 047073 218 VLNQPYYG-AFLNSA-LHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGF-LYLCDGFLEP 294 (316)
Q Consensus 218 ~~~~~~~~-v~~~G~-lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~-L~lv~~~~~~ 294 (316)
. ...+ ..-+|. +++.+..+ + ...|..+|+++.....+.. .... . .... ..-+|+ |++... ...
T Consensus 307 ~---~~~p~wSpDG~~I~f~s~~~-g-~~~Iy~~dl~~g~~~~Lt~-~g~~--~----~~~~-~SpDG~~l~~~~~-~~g 372 (448)
T PRK04792 307 I---DTEPSWHPDGKSLIFTSERG-G-KPQIYRVNLASGKVSRLTF-EGEQ--N----LGGS-ITPDGRSMIMVNR-TNG 372 (448)
T ss_pred C---ccceEECCCCCEEEEEECCC-C-CceEEEEECCCCCEEEEec-CCCC--C----cCee-ECCCCCEEEEEEe-cCC
Confidence 1 0111 223554 44444321 1 3578899998887776643 1111 0 1111 122554 444443 356
Q ss_pred eEEEEEEe
Q 047073 295 NLDIWIMK 302 (316)
Q Consensus 295 ~~~vW~l~ 302 (316)
..+||.++
T Consensus 373 ~~~I~~~d 380 (448)
T PRK04792 373 KFNIARQD 380 (448)
T ss_pred ceEEEEEE
Confidence 67777775
No 116
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=25.11 E-value=4.9e+02 Score=23.13 Aligned_cols=107 Identities=10% Similarity=0.020 Sum_probs=60.4
Q ss_pred ceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCce
Q 047073 139 DIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYV 218 (316)
Q Consensus 139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~ 218 (316)
..+.-++|-|.+..+-|-+.. ..........||+..+-+-.-.... -++-+.....++||..- ..
T Consensus 124 ~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~G~---yGrLdPa~~~i~vfpaP-----------qG 188 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDPWGNLWFTGQIGA---YGRLDPARNVISVFPAP-----------QG 188 (353)
T ss_pred ceeEEecCcccceEEeecccc-cCCCcccceeeCCCccEEEeecccc---ceecCcccCceeeeccC-----------CC
Confidence 377778888888776665432 2222244555666432111111111 11112445566666532 12
Q ss_pred eccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCc
Q 047073 219 LNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTR 265 (316)
Q Consensus 219 ~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~ 265 (316)
...+.-++.-||.+|+-+.. ..+|...|+.+..-..++. |..
T Consensus 189 ~gpyGi~atpdGsvwyasla----gnaiaridp~~~~aev~p~-P~~ 230 (353)
T COG4257 189 GGPYGICATPDGSVWYASLA----GNAIARIDPFAGHAEVVPQ-PNA 230 (353)
T ss_pred CCCcceEECCCCcEEEEecc----ccceEEcccccCCcceecC-CCc
Confidence 22233367779999988666 3589999999998888888 443
No 117
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=25.07 E-value=92 Score=25.50 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=25.8
Q ss_pred CCceeeeccCceEEeeeeccCCceEEEEcCCCCceE
Q 047073 117 ERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHL 152 (316)
Q Consensus 117 ~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~ 152 (316)
..+.-++-.+|-+|+.+ . .+..+..||.||+-.
T Consensus 31 sr~s~VS~~~~~~C~s~-~--~~~~~~vDP~Tgra~ 63 (263)
T PF07861_consen 31 SRFSSVSFAGGRACLSD-T--AGSVYTVDPLTGRAV 63 (263)
T ss_pred ceeEEEecCCceEEEec-C--CCceEEecccccccc
Confidence 34556667789999998 5 788999999997644
No 118
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=24.82 E-value=89 Score=17.80 Aligned_cols=16 Identities=6% Similarity=0.308 Sum_probs=11.2
Q ss_pred ccEEEEEeCCCc--eeeE
Q 047073 243 TAFMCSFDLGDE--QFRQ 258 (316)
Q Consensus 243 ~~~i~~fD~~~~--~~~~ 258 (316)
...|.++|..|. .|+.
T Consensus 9 ~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TSEEEEEETTTTSEEEEE
T ss_pred CCEEEEEECCCCCEEEee
Confidence 348999998876 4443
No 119
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=24.38 E-value=2.3e+02 Score=21.60 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=31.4
Q ss_pred cCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCc--eEEEEEeCCCCCeEEE
Q 047073 125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATR--IRGFGYNHCTNQYKVI 181 (316)
Q Consensus 125 ~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~--~~~~~~d~~~~~~kvv 181 (316)
-|=+|++.+....-+.+|.+||.+.+...|-.......... -..+-||....+|+-+
T Consensus 48 ~hflILfrd~~~~fRglY~~~~~~~~~~ki~G~gP~~i~~~mv~~~~KYdSg~K~F~~i 106 (123)
T PF08683_consen 48 NHFLILFRDAGCQFRGLYSYDPESEELVKIYGTGPRVITPSMVDKFYKYDSGSKQFKPI 106 (123)
T ss_dssp S-EEEEESSSS-SEEEEEEE-TTSS-EEEEESSS-SEE-TTTEEEEEEEETTTTEEEE-
T ss_pred CeEEEEEecCCCceEEEEEEeCCCCeEEEEEccCcCccCHHHHHHHhcccccCceeeec
Confidence 34556666533346678999999998877665432112111 4455677777777766
No 120
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.53 E-value=6e+02 Score=23.24 Aligned_cols=101 Identities=11% Similarity=-0.053 Sum_probs=47.4
Q ss_pred CeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCC------CccEEEEEeCCCcee-eEecCCCCccccC
Q 047073 197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDK------RTAFMCSFDLGDEQF-RQFPGPPTREYEK 269 (316)
Q Consensus 197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~------~~~~i~~fD~~~~~~-~~i~lPP~~~~~~ 269 (316)
..+.|++..++ +.++..+....+.. -+.-+|...+++..... +...|.+||+++.+. ..|++|+......
T Consensus 27 ~~v~ViD~~~~--~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG--RVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC--EEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 56677776664 33221111111111 13345654444444100 156999999998855 6788865522100
Q ss_pred CCCccceEEEEECCeEEE-EEccCCCeEEEEEE
Q 047073 270 CRPINSISVGVSGGFLYL-CDGFLEPNLDIWIM 301 (316)
Q Consensus 270 ~~~~~~~~L~~~~G~L~l-v~~~~~~~~~vW~l 301 (316)
. ......-..-+|+..+ .....++.+.|.-+
T Consensus 104 ~-~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~ 135 (352)
T TIGR02658 104 G-TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL 135 (352)
T ss_pred c-CccceEEECCCCCEEEEecCCCCCEEEEEEC
Confidence 0 0011222334666444 44333555555544
No 121
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.29 E-value=6.1e+02 Score=23.21 Aligned_cols=139 Identities=11% Similarity=-0.082 Sum_probs=75.5
Q ss_pred ceEEEEcCCCCceE-ecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceE-ecCCCC
Q 047073 139 DIISVCNPILGDHL-VLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWR-NIGDLP 216 (316)
Q Consensus 139 ~~~~v~NP~T~~~~-~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~-~~~~~~ 216 (316)
++++|+|..|++.. .||.... + .++ ..+..+...|....+.+.... .....++||+..+..=. .++.++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-P-----~~~-~spDg~~lyva~~~~~R~~~G--~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-P-----NPV-VASDGSFFAHASTVYSRIARG--KRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-C-----cee-ECCCCCEEEEEeccccccccC--CCCCEEEEEECccCcEEeEEccCC
Confidence 78999999998854 4665422 1 122 444433433333333333221 45788999999998643 333222
Q ss_pred ce-----eccCCcceeeCCeEEEEEe-cCCCCccEEEEEeCCCcee-eEecCCCCccccCCCCccceEEEEECCeEEEEE
Q 047073 217 YV-----LNQPYYGAFLNSALHWYAH-SHDKRTAFMCSFDLGDEQF-RQFPGPPTREYEKCRPINSISVGVSGGFLYLCD 289 (316)
Q Consensus 217 ~~-----~~~~~~~v~~~G~lywl~~-~~~~~~~~i~~fD~~~~~~-~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~ 289 (316)
.+ .....-.+.-||+.-++.. .. ...+.++|+++.+. .+|+. |.+...--..-........||++..+.
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSP---SPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEecCCC---CCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEE
Confidence 21 1112225667887555443 32 35899999998866 56788 543321000002333445677766544
Q ss_pred c
Q 047073 290 G 290 (316)
Q Consensus 290 ~ 290 (316)
.
T Consensus 174 ~ 174 (352)
T TIGR02658 174 Y 174 (352)
T ss_pred e
Confidence 4
No 122
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=21.50 E-value=5.7e+02 Score=24.81 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=45.0
Q ss_pred eEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeC-CCceEecCCCCce------eccCCcceeeCCeEEEEEec
Q 047073 166 IRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIG-TNTWRNIGDLPYV------LNQPYYGAFLNSALHWYAHS 238 (316)
Q Consensus 166 ~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~-t~~W~~~~~~~~~------~~~~~~~v~~~G~lywl~~~ 238 (316)
..+|-+|+..+-+-+-.. ..... .....+.||+.. ...-.......+. .....++++++..+|-++..
T Consensus 436 hkAfl~~~~~~ll~~Pv~---~~~~~--~~~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi~d~lYtvS~~ 510 (521)
T PF09826_consen 436 HKAFLFDKEKNLLAFPVS---SSYGY--FNFQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYIGDTLYTVSDN 510 (521)
T ss_pred ceEEEEeCCCCEEEEEEE---EccCc--cccceEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEECCEEEEEECC
Confidence 567777776544333322 11111 446778888776 3333332211111 11235689999999999877
Q ss_pred CCCCccEEEEEeCCC
Q 047073 239 HDKRTAFMCSFDLGD 253 (316)
Q Consensus 239 ~~~~~~~i~~fD~~~ 253 (316)
.|.++|+++
T Consensus 511 ------~i~~~~l~t 519 (521)
T PF09826_consen 511 ------GIKAYDLNT 519 (521)
T ss_pred ------EEEEEehHh
Confidence 799999876
No 123
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=21.39 E-value=5.4e+02 Score=22.98 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=27.4
Q ss_pred ceeeC--CeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCcc
Q 047073 225 GAFLN--SALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTRE 266 (316)
Q Consensus 225 ~v~~~--G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~ 266 (316)
+++.. +.+||.... ...|..+|+.+..-+.+.. |...
T Consensus 30 P~w~~~~~~L~w~DI~----~~~i~r~~~~~g~~~~~~~-p~~~ 68 (307)
T COG3386 30 PVWDPDRGALLWVDIL----GGRIHRLDPETGKKRVFPS-PGGF 68 (307)
T ss_pred ccCcCCCCEEEEEeCC----CCeEEEecCCcCceEEEEC-CCCc
Confidence 34443 468998777 4689999999888888888 4433
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.05 E-value=6.5e+02 Score=22.70 Aligned_cols=132 Identities=11% Similarity=0.216 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCc-eEecCCCC
Q 047073 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNT-WRNIGDLP 216 (316)
Q Consensus 138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~-W~~~~~~~ 216 (316)
+..+-.||..+|+.-.+-++.. ....+-+++....|.|+. ...+.||.+++-+ -+.+..+.
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~-----~at~v~w~~~Gd~F~v~~-------------~~~i~i~q~d~A~v~~~i~~~~ 209 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKN-----KATLVSWSPQGDHFVVSG-------------RNKIDIYQLDNASVFREIENPK 209 (362)
T ss_pred CceeeeehhhcCccceeeccCC-----cceeeEEcCCCCEEEEEe-------------ccEEEEEecccHhHhhhhhccc
Confidence 4456666666665444333321 122345555544455443 4667888777653 23332211
Q ss_pred ceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEEC--CeEEEEEccCCC
Q 047073 217 YVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSG--GFLYLCDGFLEP 294 (316)
Q Consensus 217 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~--G~L~lv~~~~~~ 294 (316)
.. ...-+.+|.--..+.+ ...|..+|.++. .|+.....+. ..-..+..+. ..=+++....+.
T Consensus 210 r~----l~~~~l~~~~L~vG~d----~~~i~~~D~ds~------~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 210 RI----LCATFLDGSELLVGGD----NEWISLKDTDSD------TPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred cc----eeeeecCCceEEEecC----CceEEEeccCCC------ccceeeecch--hheeeeEEEecCCceEEEEeccCc
Confidence 00 0112233333333333 458888888872 2222222110 0112222222 223445555589
Q ss_pred eEEEEEEee
Q 047073 295 NLDIWIMKK 303 (316)
Q Consensus 295 ~~~vW~l~~ 303 (316)
.+.||-++-
T Consensus 274 ~I~vWd~~~ 282 (362)
T KOG0294|consen 274 FIKVWDIDM 282 (362)
T ss_pred eEEEEEccc
Confidence 999998853
Done!