BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047075
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
Length = 349
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 45 KRYGYADIKKMTNSFKYK--LGQGGYGSVYKGKLLDGRNVA 83
KR+ +++ +++F K LG+GG+G VYKG+L DG VA
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVA 66
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 45 KRYGYADIKKMTNSFKYK--LGQGGYGSVYKGKLLDGRNVA 83
KR+ +++ +++F K LG+GG+G VYKG+L DG VA
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVA 58
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 46 RYGYADIKKMTNSFKYK--LGQGGYGSVYKGKLLDGRNVA 83
R D+++ TN+F +K +G G +G VYKG L DG VA
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVA 67
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
Length = 327
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 46 RYGYADIKKMTNSFKYK--LGQGGYGSVYKGKLLDGRNVA 83
R D+++ TN+F +K +G G +G VYKG L DG VA
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVA 67
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 42 PSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
PS Y ++++ + K+KLG G YG VY+G
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 37
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound
To Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound
To Activated Abl Kinase Domain
Length = 278
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 42 PSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
PS Y ++++ + K+KLG G YG VY+G
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 37
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 42 PSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
PS Y ++++ + K+KLG G YG VY+G
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 37
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 42 PSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
PS Y ++++ + K+KLG G YG VY+G
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 37
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl
Tyrosine Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl
Tyrosine Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And
Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And
Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment
(Frag1) I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment
(Frag1) I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 42 PSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
PS Y ++++ + K+KLG G YG VY+G
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 37
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 8/36 (22%)
Query: 47 YGYADIKKMTNSFKY--------KLGQGGYGSVYKG 74
+ + ++K +TN+F K+G+GG+G VYKG
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG 44
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex
With The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex
With The Inhibitor Pha-739358
Length = 286
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 42 PSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
PSP Y ++++ + K+KLG G YG VY+G
Sbjct: 2 PSPN-YDKWEMERTDITMKHKLGGGQYGEVYEG 33
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 42 PSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
PSP Y ++++ + K+KLG G YG VY+G
Sbjct: 5 PSPN-YDKWEMERTDITMKHKLGGGQYGEVYEG 36
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 8/36 (22%)
Query: 47 YGYADIKKMTNSFKY--------KLGQGGYGSVYKG 74
+ + ++K +TN+F K+G+GG+G VYKG
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG 50
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 8/36 (22%)
Query: 47 YGYADIKKMTNSFKY--------KLGQGGYGSVYKG 74
+ + ++K +TN+F K+G+GG+G VYKG
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG 50
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain
Bound With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain
Bound With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 40 GSPSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
GSP+ Y ++++ + K+KLG G YG VY+G
Sbjct: 1 GSPN---YDKWEMERTDITMKHKLGGGQYGEVYEG 32
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 40 GSPSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
GSP+ Y ++++ + K+KLG G YG VY+G
Sbjct: 1 GSPN---YDKWEMERTDITMKHKLGGGQYGEVYEG 32
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 11/44 (25%)
Query: 42 PSPKR-----------YGYADIKKMTNSFKYKLGQGGYGSVYKG 74
P+PKR Y ++++ + K+KLG G YG VY+G
Sbjct: 196 PAPKRNKPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 239
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To
The Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To
The Myristoyl Binding Site
Length = 298
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 40 GSPSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
GSP+ Y ++++ + K+KLG G YG VY+G
Sbjct: 14 GSPN---YDKWEMERTDITMKHKLGGGQYGEVYEG 45
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase
Bound With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And
Overcomes Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And
Overcomes Mutation-B Resistance
Length = 288
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 40 GSPSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
GSP+ Y ++++ + K+KLG G YG VY+G
Sbjct: 1 GSPN---YDKWEMERTDITMKHKLGGGQYGEVYEG 32
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 40 GSPSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
GSP+ Y ++++ + K+KLG G YG VY+G
Sbjct: 1 GSPN---YDKWEMERTDITMKHKLGGGQYGEVYEG 32
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 11/44 (25%)
Query: 42 PSPKR-----------YGYADIKKMTNSFKYKLGQGGYGSVYKG 74
P+PKR Y ++++ + K+KLG G YG VY+G
Sbjct: 193 PAPKRNKPTVYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 236
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 8/36 (22%)
Query: 47 YGYADIKKMTNSFKY--------KLGQGGYGSVYKG 74
+ + ++K +TN+F K G+GG+G VYKG
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKG 41
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 62 KLGQGGYGSVYKGKLLDGRNVA 83
K+G+G YG VYK K GR VA
Sbjct: 28 KVGEGTYGVVYKAKDSQGRIVA 49
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 62 KLGQGGYGSVYKGKLLDGRNVA 83
K+G+G YG VYK K GR VA
Sbjct: 28 KVGEGTYGVVYKAKDSQGRIVA 49
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 11/44 (25%)
Query: 42 PSPKR-----YGYA------DIKKMTNSFKYKLGQGGYGSVYKG 74
P+PKR YG + ++++ + K+KLG G YG VY+G
Sbjct: 235 PAPKRNKPTVYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEG 278
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain
Bound To Appcp From D. Discoideum
Length = 287
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 59 FKYKLGQGGYGSVYKGKLLDGRNV 82
++ ++G+GG+G V+KG+L+ ++V
Sbjct: 23 YEKQIGKGGFGLVHKGRLVKDKSV 46
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 59 FKYKLGQGGYGSVYKGKLLDGRNV 82
++ ++G+GG+G V+KG+L+ ++V
Sbjct: 23 YEKQIGKGGFGLVHKGRLVKDKSV 46
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase
Domain From D. Discoideum Bound To Appcp
Length = 287
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 59 FKYKLGQGGYGSVYKGKLLDGRNV 82
++ ++G+GG+G V+KG+L+ ++V
Sbjct: 23 YEKQIGKGGFGLVHKGRLVKDKSV 46
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 40 GSPSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
G SP Y ++++ + K+KLG G YG VY+G
Sbjct: 1 GHMSPN-YDKWEMERTDITMKHKLGGGQYGEVYEG 34
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 40 GSPSPKRYGYADIKKMTNSFKYKLGQGGYGSVYKG 74
G SP Y ++++ + K+KLG G YG VY+G
Sbjct: 1 GHMSPN-YDKWEMERTDITMKHKLGGGQYGEVYEG 34
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 47 YGYADIKKMTNSFKYKLGQGGYGSVYKG 74
Y ++++ + K+KLG G YG VY+G
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEG 32
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 47 YGYADIKKMTNSFKYKLGQGGYGSVYKG 74
Y ++++ + K+KLG G YG VY+G
Sbjct: 7 YDKWEMERTDITMKHKLGGGQYGEVYEG 34
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib
(Sti571, Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib
(Sti571, Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib
(Sti571, Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib
(Sti571, Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 47 YGYADIKKMTNSFKYKLGQGGYGSVYKG 74
Y ++++ + K+KLG G YG VY+G
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEG 32
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 47 YGYADIKKMTNSFKYKLGQGGYGSVYKG 74
Y ++++ + K+KLG G YG VY+G
Sbjct: 6 YDKWEMERTDITMKHKLGGGQYGEVYEG 33
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 62 KLGQGGYGSVYKGK 75
KLG+G Y +VYKGK
Sbjct: 9 KLGEGTYATVYKGK 22
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 51 DIKKMTNSFKYKLGQGGYGSVYKG 74
++++ + K+KLG G YG VY+G
Sbjct: 7 EMERTDITMKHKLGGGQYGEVYEG 30
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 51 DIKKMTNSFKYKLGQGGYGSVYKG 74
++++ + K+KLG G YG VY+G
Sbjct: 7 EMERTDITMKHKLGGGQYGEVYEG 30
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 63 LGQGGYGSVYKGKLL-DGRNV 82
LG G +G+VYKG + DG NV
Sbjct: 25 LGSGAFGTVYKGIWIPDGENV 45
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 62 KLGQGGYGSVYKG 74
KLG+G YGSVYK
Sbjct: 36 KLGEGSYGSVYKA 48
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35
A Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35
A Resolution
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 63 LGQGGYGSVYKGKLLDGRNVA 83
+G+G YG+VYKG LD R VA
Sbjct: 21 IGRGRYGAVYKGS-LDERPVA 40
>pdb|3CSL|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa And Heme
pdb|3CSL|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa And Heme
pdb|3CSN|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa
pdb|3CSN|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr In Complex With Its Hemophore Hasa
Length = 865
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 22 SYNSTESCLNIETFLRNYGSPSP-----KRYGYADIKKMTNSFKYKL 63
SY T++ I L N G+ P KR GY D+ +F Y L
Sbjct: 344 SYLQTQTASPIAGTLTNLGTRPPYELGWKRTGYTDVMARNAAFDYSL 390
>pdb|3DDR|A Chain A, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr-Ile671gly Mutant In Complex With Its Hemophore Hasa
And Heme
pdb|3DDR|B Chain B, Structure Of The Serratia Marcescens Hemophore Receptor
Hasr-Ile671gly Mutant In Complex With Its Hemophore Hasa
And Heme
Length = 865
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 22 SYNSTESCLNIETFLRNYGSPSP-----KRYGYADIKKMTNSFKYKL 63
SY T++ I L N G+ P KR GY D+ +F Y L
Sbjct: 344 SYLQTQTASPIAGTLTNLGTRPPYELGWKRTGYTDVMARNAAFDYSL 390
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 12/46 (26%)
Query: 39 YGSPSPKRYGYADI----------KKMTNSFKYKLGQGGYGSVYKG 74
Y S +P+ + AD+ +K+T S +LGQG +G VY+G
Sbjct: 23 YASVNPEYFSAADVYVPDEWEVAREKITMS--RELGQGSFGMVYEG 66
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 49 YADIKKMTNSFKYKLGQGGYGSVYKGK 75
Y +I+ ++G G +G+VYKGK
Sbjct: 30 YWEIEASEVMLSTRIGSGSFGTVYKGK 56
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor
Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor
Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor
Vx-680
Length = 292
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 51 DIKKMTNSFKYKLGQGGYGSVYKG 74
++++ + K+KLG G YG VY G
Sbjct: 28 EMERTDITMKHKLGGGQYGEVYVG 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,294,720
Number of Sequences: 62578
Number of extensions: 84726
Number of successful extensions: 372
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 47
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)