BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047076
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NOG|A Chain A, Crystal Structure Of Conserved Protein 0546 From
           Thermoplasma Acidophilum
          Length = 177

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 6   GPTSTNQNPKAKEAAICQECKYKVSK---YKCPGCSIRTCSLACVKAHKQRTGCSGNRNV 62
           G T T +     EA + +E K ++ K   +  PG S+ + SL   +A  +R      R +
Sbjct: 75  GRTVTREMIDYLEARV-KEMKAEIGKIELFVVPGGSVESASLHMARAVSRRL----ERRI 129

Query: 63  TQFVPLSQFNDNILLSATKLSS 84
                L++ N N+L+ A +LSS
Sbjct: 130 VAASKLTEINKNVLIYANRLSS 151


>pdb|2YQQ|A Chain A, Solution Structure Of The Zf-Hit Domain In Zinc Finger
          Hit Domain-Containing Protein 3 (Trip-3)
          Length = 56

 Score = 29.6 bits (65), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 31 KYKCPGCSIRTCSLACVKAHKQR 53
          KY+CP C +  CS+ C + HK++
Sbjct: 23 KYRCPACRVPYCSVVCFRKHKEQ 45


>pdb|1X4S|A Chain A, Solution Structure Of Zinc Finger Hit Domain In Protein
          Fon
          Length = 59

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 16 AKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAH 50
          A     C   + + ++Y CP C+   CSL C + H
Sbjct: 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45


>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula
 pdb|1TP9|B Chain B, Prx D (Type Ii) From Populus Tremula
 pdb|1TP9|C Chain C, Prx D (Type Ii) From Populus Tremula
 pdb|1TP9|D Chain D, Prx D (Type Ii) From Populus Tremula
          Length = 162

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 28 KVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLSA 79
          KV  +  PG    TCSL  V    ++ G   ++ VT+ + +S  ND  ++ A
Sbjct: 37 KVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCIS-VNDPFVMKA 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.125    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,261,140
Number of Sequences: 62578
Number of extensions: 66185
Number of successful extensions: 118
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)