BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047076
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UFB2|BCD1_MOUSE Box C/D snoRNA protein 1 OS=Mus musculus GN=Znhit6 PE=2 SV=2
Length = 460
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
C+ C + +KY+CP C +CSL CVK HK CSG R+ T +V L QF + LLS
Sbjct: 211 CETCGTEEAKYRCPRCMRFSCSLPCVKKHKADLTCSGVRDKTAYVSLQQFTEMNLLS 267
>sp|Q9NWK9|BCD1_HUMAN Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6 PE=1 SV=1
Length = 470
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
C+ C + +KY+CP C +CSL CVK HK C+G R+ T ++ + QF + LLS
Sbjct: 220 CETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLS 276
>sp|Q5RF97|BCD1_PONAB Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1
Length = 465
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNILLS 78
C+ C + +KY+CP C +CSL CVK HK C+G R+ T ++ + QF + LLS
Sbjct: 215 CETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLS 271
>sp|O74906|BCD1_SCHPO Putative box C/D snoRNA protein SPCC613.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC613.07 PE=1 SV=1
Length = 345
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 20 AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDNI 75
IC C+ SKY+CP C R C L C HK+ T CSG R+ FVP S+ +++
Sbjct: 7 GICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPATFVPKSKLVNHL 62
>sp|P38772|BCD1_YEAST Box C/D snoRNA protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BCD1 PE=1 SV=1
Length = 366
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSG 58
A +C C K KYKCP C ++TCSL C K HK R CSG
Sbjct: 2 AVLCGVCGIKEFKYKCPRCLVQTCSLECSKKHKTRDNCSG 41
>sp|O36031|YEKJ_SCHPO Uncharacterized zinc-finger protein C4F10.19c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.19c PE=4 SV=1
Length = 154
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 22 CQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQF 65
C C KYKCP CS CSL C K H+ + + N T F
Sbjct: 4 CSICNESEIKYKCPKCSFPYCSLPCWKIHQSQCETVNDNNTTTF 47
>sp|P46973|HIT1_YEAST Protein HIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HIT1 PE=1 SV=1
Length = 164
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 19 AAICQECKYKVSKYKCPGCSIRTCSLACVK-----AHKQ----RTGCSGNRNVTQFVPLS 69
A C C+ KYKCP C +R CSL C K HK+ R G N V
Sbjct: 5 AVKCGICRGVDGKYKCPKCGVRYCSLKCYKDAAKHVHKESEQPRAGTEANVEVVN----- 59
Query: 70 QFNDNILLSATKLS 83
ND I+ S+ ++
Sbjct: 60 --NDKIINSSLAMN 71
>sp|Q6UIM2|ZNHI3_PANTR Zinc finger HIT domain-containing protein 3 (Fragment) OS=Pan
troglodytes GN=ZNHIT3 PE=2 SV=1
Length = 141
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 31 KYKCPGCSIRTCSLACVKAHKQR 53
KY+CP C + CS+AC + HK++
Sbjct: 5 KYRCPACRVPYCSVACFRKHKEQ 27
>sp|Q2KIH1|ZNHI3_BOVIN Zinc finger HIT domain-containing protein 3 OS=Bos taurus
GN=ZNHIT3 PE=2 SV=1
Length = 179
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 AICQECKYKVSKYKCPGCSIRTCSLACVKAHK 51
A+C C K KY+CP C + CSL C + HK
Sbjct: 9 AVCVVCLEK-PKYRCPACRVPYCSLPCFRKHK 39
>sp|Q8P2Q5|RADA_STRP8 DNA repair protein RadA homolog OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=radA PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGCS 38
K K ICQEC Y+ KY +CP CS
Sbjct: 3 KKKATFICQECGYQSPKYLGRCPNCS 28
>sp|Q5XDZ7|RADA_STRP6 DNA repair protein RadA homolog OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=radA
PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGCS 38
K K ICQEC Y+ KY +CP CS
Sbjct: 3 KKKATFICQECGYQSPKYLGRCPNCS 28
>sp|Q9A1K1|RADA_STRP1 DNA repair protein RadA homolog OS=Streptococcus pyogenes
serotype M1 GN=radA PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGCS 38
K K ICQEC Y+ KY +CP CS
Sbjct: 3 KKKATFICQECGYQSPKYLGRCPNCS 28
>sp|Q6UIM1|ZNHI3_MACMU Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca
mulatta GN=ZNHIT3 PE=2 SV=1
Length = 147
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 31 KYKCPGCSIRTCSLACVKAHKQR 53
KY+CP C + CS+AC + HK++
Sbjct: 11 KYRCPACRVPYCSVACFRKHKEQ 33
>sp|P0DD79|RADA_STRPQ DNA repair protein RadA homolog OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=radA PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGCS 38
K K ICQEC Y+ KY +CP CS
Sbjct: 3 KKKATFICQECGYQSPKYLGRCPNCS 28
>sp|P0DD78|RADA_STRP3 DNA repair protein RadA homolog OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=radA
PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGCS 38
K K ICQEC Y+ KY +CP CS
Sbjct: 3 KKKATFICQECGYQSPKYLGRCPNCS 28
>sp|O66827|RADA_AQUAE DNA repair protein RadA homolog OS=Aquifex aeolicus (strain VF5)
GN=radA PE=3 SV=1
Length = 444
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGC 37
K K A +CQEC YK K+ KCP C
Sbjct: 3 KNKTAYVCQECGYKSVKWLGKCPSC 27
>sp|Q9KGG1|RADA_BACHD DNA repair protein RadA homolog OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /
C-125) GN=radA PE=3 SV=1
Length = 457
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGCSIRTC---SLACVKAHKQRTGCSGNRNVTQFVPLS 69
K K +CQEC Y+ +K+ KCPGC VKA R+ + + + P++
Sbjct: 3 KKKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSGAGIAKPQPIT 62
Query: 70 Q 70
+
Sbjct: 63 K 63
>sp|Q2TBW5|ZNHI2_BOVIN Zinc finger HIT domain-containing protein 2 OS=Bos taurus
GN=ZNHIT2 PE=2 SV=1
Length = 399
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 16 AKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAH 50
A C + + ++Y CP C++ CSL C +AH
Sbjct: 4 AGPCGFCPTGEAQPARYTCPRCNVPYCSLRCYRAH 38
>sp|Q15649|ZNHI3_HUMAN Zinc finger HIT domain-containing protein 3 OS=Homo sapiens
GN=ZNHIT3 PE=1 SV=2
Length = 155
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 20 AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQR 53
+C C K KY+CP C + CS+ C + HK++
Sbjct: 9 VVCVICLEK-PKYRCPACRVPYCSVVCFRKHKEQ 41
>sp|Q9CQK1|ZNHI3_MOUSE Zinc finger HIT domain-containing protein 3 OS=Mus musculus
GN=Znhit3 PE=1 SV=1
Length = 151
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 20 AICQECKYKVSKYKCPGCSIRTCSLACVKAHKQR 53
A+C C K KY+CP C + CS+ C + HK++
Sbjct: 9 AVCVVCLEK-PKYRCPTCRVPYCSVPCFQKHKEQ 41
>sp|P37572|RADA_BACSU DNA repair protein RadA homolog OS=Bacillus subtilis (strain 168)
GN=radA PE=3 SV=1
Length = 458
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 15 KAKEAAICQECKYKVSKY--KCPGC 37
K K ICQ C Y+ K+ KCPGC
Sbjct: 3 KTKSKFICQSCGYESPKWMGKCPGC 27
>sp|Q9QY66|ZNHI2_MOUSE Zinc finger HIT domain-containing protein 2 OS=Mus musculus
GN=Znhit2 PE=2 SV=2
Length = 399
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 SKYKCPGCSIRTCSLACVKAH 50
++Y CP C+ CSL C +AH
Sbjct: 18 ARYTCPRCNAPYCSLRCYRAH 38
>sp|B2V2P3|ATKB_CLOBA Potassium-transporting ATPase B chain OS=Clostridium botulinum
(strain Alaska E43 / Type E3) GN=kdpB PE=3 SV=1
Length = 688
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 58 GNRNVTQFVPLSQFNDNILLSATKLSS 84
GNR +F+P++ N+N L A +LSS
Sbjct: 321 GNREACEFIPVNGVNENELADAAQLSS 347
>sp|Q5XIA4|CNOTA_RAT CCR4-NOT transcription complex subunit 10 OS=Rattus norvegicus
GN=Cnot10 PE=2 SV=1
Length = 744
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 13 NPKAKEAAICQECKYKVSKYKCPGCSIRTCSL-ACVKAHKQRTGCSGNRNVTQFV 66
NPKA+ AA+ + K K+ +YK G I+ SL AC + K +GN + F+
Sbjct: 202 NPKAESAALIEAAKSKIHQYKVRGY-IQMKSLKACKREIKSVMNTAGNSAPSLFL 255
>sp|Q8BH15|CNOTA_MOUSE CCR4-NOT transcription complex subunit 10 OS=Mus musculus GN=Cnot10
PE=2 SV=1
Length = 744
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 13 NPKAKEAAICQECKYKVSKYKCPGCSIRTCSL-ACVKAHKQRTGCSGNRNVTQFV 66
NPKA+ AA+ + K K+ +YK G I+ SL AC + K +GN + F+
Sbjct: 202 NPKAESAALIEAAKSKIHQYKVRGY-IQMKSLKACKREIKSVMNTAGNSAPSLFL 255
>sp|Q9UHR6|ZNHI2_HUMAN Zinc finger HIT domain-containing protein 2 OS=Homo sapiens
GN=ZNHIT2 PE=1 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 16 AKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAH 50
A C + + ++Y CP C+ CSL C + H
Sbjct: 4 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 38
>sp|Q0P5X5|ZBBX_MOUSE Zinc finger B-box domain-containing protein 1 OS=Mus musculus
GN=Zbbx PE=2 SV=1
Length = 716
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 12 QNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQF 71
+NPK K +C +C+ K + C C CS K H++ G T P SQ
Sbjct: 8 ENPKTKRK-VCGQCENKAALLVCLECGEDYCSGCFAKMHQK--GALKFHRTTLLQPKSQI 64
Query: 72 NDNILLSATKL 82
NIL++A +
Sbjct: 65 LSNILIAAHQF 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.125 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,515,184
Number of Sequences: 539616
Number of extensions: 872485
Number of successful extensions: 2303
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2282
Number of HSP's gapped (non-prelim): 40
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)