Query 047076
Match_columns 86
No_of_seqs 100 out of 477
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 12:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqq_A Zinc finger HIT domain- 99.7 2.1E-18 7.1E-23 104.4 2.7 48 14-64 7-55 (56)
2 1x4s_A Protein FON, zinc finge 99.5 9.1E-16 3.1E-20 93.7 1.2 41 19-62 11-54 (59)
3 2od1_A Protein CBFA2T1; zinc f 96.5 0.0014 4.9E-08 38.4 2.4 41 17-60 11-56 (60)
4 2dj8_A Protein CBFA2T1; zinc f 95.8 0.0057 1.9E-07 35.7 2.5 33 17-50 13-46 (60)
5 1wg2_A Zinc finger (AN1-like) 95.4 0.012 4.2E-07 35.9 3.0 47 9-59 5-53 (64)
6 1wfh_A Zinc finger (AN1-like) 94.7 0.027 9.3E-07 34.3 3.2 45 10-58 6-52 (64)
7 2yqp_A Probable ATP-dependent 94.7 0.022 7.6E-07 34.4 2.6 46 5-51 5-50 (60)
8 1x4w_A Hypothetical protein FL 94.6 0.018 6.1E-07 35.4 2.2 44 12-59 8-56 (67)
9 1wff_A Riken cDNA 2810002D23 p 94.2 0.051 1.7E-06 34.7 3.7 44 12-59 18-64 (85)
10 2odd_A Protein CBFA2T1; MYND z 94.2 0.014 4.8E-07 34.2 1.0 37 19-58 17-58 (64)
11 2jw6_A Deformed epidermal auto 93.8 0.021 7E-07 32.0 1.2 31 19-50 9-40 (52)
12 1wfp_A Zinc finger (AN1-like) 93.2 0.085 2.9E-06 33.0 3.3 45 13-61 19-65 (74)
13 2d8q_A BLU protein, zinc finge 91.9 0.05 1.7E-06 32.8 1.1 38 19-59 15-57 (70)
14 3qww_A SET and MYND domain-con 91.5 0.037 1.3E-06 42.8 0.1 39 17-57 47-91 (433)
15 3qwp_A SET and MYND domain-con 91.1 0.06 2.1E-06 41.2 0.9 38 18-57 46-89 (429)
16 1wfl_A Zinc finger protein 216 89.1 0.57 2E-05 29.1 4.1 30 14-44 20-51 (74)
17 3n71_A Histone lysine methyltr 85.4 0.23 7.8E-06 38.9 0.8 39 17-57 47-91 (490)
18 1z60_A TFIIH basal transcripti 84.2 0.35 1.2E-05 28.7 1.1 39 20-58 16-57 (59)
19 2aus_D NOP10, ribosome biogene 77.7 0.59 2E-05 28.0 0.5 41 18-74 4-44 (60)
20 2d8v_A Zinc finger FYVE domain 76.8 0.96 3.3E-05 27.7 1.3 29 19-49 8-37 (67)
21 1x4v_A Hypothetical protein LO 76.1 2 6.8E-05 25.6 2.6 44 14-60 7-53 (63)
22 2apo_B Ribosome biogenesis pro 76.1 0.77 2.6E-05 27.4 0.7 40 19-74 6-45 (60)
23 2jvx_A NF-kappa-B essential mo 74.4 0.73 2.5E-05 23.6 0.2 24 29-52 1-24 (28)
24 2w0t_A Lethal(3)malignant brai 68.3 0.67 2.3E-05 26.1 -0.8 35 18-52 5-39 (43)
25 3t7l_A Zinc finger FYVE domain 60.3 9.9 0.00034 23.3 3.5 26 19-44 20-49 (90)
26 1vd4_A Transcription initiatio 58.1 7.5 0.00026 21.0 2.4 11 31-41 39-49 (62)
27 2i5o_A DNA polymerase ETA; zin 58.0 4.7 0.00016 21.9 1.4 13 29-41 7-19 (39)
28 2lce_A B-cell lymphoma 6 prote 56.8 6 0.00021 21.7 1.8 22 31-52 45-66 (74)
29 1wfe_A Riken cDNA 2310008M20 p 53.2 7.9 0.00027 24.1 2.1 42 17-61 23-67 (86)
30 2e72_A POGO transposable eleme 52.1 2.6 8.8E-05 24.3 -0.3 28 30-58 11-38 (49)
31 2e5r_A Dystrobrevin alpha; ZZ 51.7 12 0.00041 21.8 2.6 30 20-49 12-44 (63)
32 1s24_A Rubredoxin 2; electron 51.1 4.6 0.00016 25.5 0.8 8 31-38 35-42 (87)
33 2m0e_A Zinc finger and BTB dom 49.9 3.4 0.00012 17.8 -0.0 21 31-51 2-22 (29)
34 2l8e_A Polyhomeotic-like prote 48.8 3.6 0.00012 23.4 -0.0 32 18-50 17-48 (49)
35 1vq8_Z 50S ribosomal protein L 48.3 6.5 0.00022 24.4 1.1 12 29-40 25-36 (83)
36 1rik_A E6APC1 peptide; E6-bind 46.0 5.2 0.00018 17.4 0.3 22 31-52 2-23 (29)
37 1ffk_W Ribosomal protein L37AE 45.7 6.3 0.00022 24.1 0.7 13 28-40 24-36 (73)
38 1znf_A 31ST zinc finger from X 45.6 3.8 0.00013 17.6 -0.2 21 32-52 2-22 (27)
39 1wys_A Riken cDNA 2310008M20 p 44.8 15 0.0005 22.5 2.3 40 19-61 14-56 (75)
40 1x6e_A Zinc finger protein 24; 44.7 13 0.00044 20.2 1.9 20 31-50 14-33 (72)
41 3j20_Y 30S ribosomal protein S 44.1 14 0.00049 20.6 2.1 24 18-41 18-47 (50)
42 2kvh_A Zinc finger and BTB dom 43.3 9.4 0.00032 16.4 1.0 20 31-50 3-22 (27)
43 3a43_A HYPD, hydrogenase nicke 43.2 5.4 0.00019 26.5 0.2 10 31-40 107-116 (139)
44 2lvr_A Zinc finger and BTB dom 48.3 5.3 0.00018 17.4 0.0 22 31-52 3-24 (30)
45 2k2d_A Ring finger and CHY zin 41.4 6.6 0.00023 24.0 0.3 24 17-40 35-64 (79)
46 3jyw_9 60S ribosomal protein L 41.1 8.1 0.00028 23.6 0.7 13 29-41 24-36 (72)
47 2m0f_A Zinc finger and BTB dom 40.9 6.1 0.00021 16.9 0.1 21 31-51 2-22 (29)
48 2lvu_A Zinc finger and BTB dom 47.0 5.7 0.0002 17.0 0.0 21 31-51 2-22 (26)
49 2ffw_A Midline-1; B-BOX, ring 40.5 31 0.001 20.4 3.3 35 17-52 28-66 (78)
50 2kvf_A Zinc finger and BTB dom 39.7 5.9 0.0002 17.1 -0.1 21 31-51 3-23 (28)
51 3pwf_A Rubrerythrin; non heme 39.7 11 0.00039 25.7 1.4 21 19-39 138-161 (170)
52 2m0d_A Zinc finger and BTB dom 39.6 6.8 0.00023 16.8 0.2 22 31-52 3-24 (30)
53 2kdx_A HYPA, hydrogenase/ureas 39.4 7.5 0.00026 24.8 0.4 20 20-39 74-98 (119)
54 3j21_i 50S ribosomal protein L 39.4 8.4 0.00029 24.2 0.6 13 29-41 33-45 (83)
55 1wil_A KIAA1045 protein; ring 39.2 21 0.00073 22.7 2.5 31 18-49 14-46 (89)
56 2cot_A Zinc finger protein 435 39.1 27 0.00092 19.0 2.7 22 31-52 46-67 (77)
57 2kvg_A Zinc finger and BTB dom 37.8 4.4 0.00015 17.8 -0.7 21 31-51 3-23 (27)
58 1paa_A Yeast transcription fac 37.4 6.8 0.00023 17.1 -0.1 20 31-50 2-21 (30)
59 1ard_A Yeast transcription fac 37.3 11 0.00039 16.0 0.8 21 31-51 2-22 (29)
60 3cc2_Z 50S ribosomal protein L 37.3 12 0.00041 24.9 1.1 12 29-40 58-69 (116)
61 4a17_Y RPL37A, 60S ribosomal p 36.4 13 0.00045 24.2 1.2 13 29-41 34-46 (103)
62 2lze_A A primordial catalytic 36.1 25 0.00084 21.9 2.4 16 17-32 15-30 (87)
63 1yuz_A Nigerythrin; rubrythrin 35.8 12 0.00042 26.1 1.0 20 20-39 172-194 (202)
64 2els_A Zinc finger protein 406 35.5 11 0.00037 17.4 0.5 23 29-51 7-29 (36)
65 1jjd_A Metallothionein, SMTA; 35.5 7.9 0.00027 22.5 0.0 20 38-57 27-47 (55)
66 1vfy_A Phosphatidylinositol-3- 35.5 30 0.001 20.1 2.6 25 20-44 12-40 (73)
67 2lvt_A Zinc finger and BTB dom 41.7 7.9 0.00027 16.8 0.0 22 31-52 2-23 (29)
68 2l43_A N-teminal domain from h 35.4 62 0.0021 19.6 4.2 29 18-47 24-57 (88)
69 3iz5_m 60S ribosomal protein L 34.8 11 0.00039 24.0 0.7 13 29-41 34-46 (92)
70 1p7a_A BF3, BKLF, kruppel-like 34.0 8 0.00028 18.0 -0.1 22 30-51 10-31 (37)
71 2ct0_A Non-SMC element 1 homol 33.1 45 0.0015 19.8 3.2 31 10-40 6-37 (74)
72 1klr_A Zinc finger Y-chromosom 32.9 8.2 0.00028 16.6 -0.2 20 32-51 3-22 (30)
73 3izc_m 60S ribosomal protein R 32.7 11 0.00038 24.1 0.4 13 29-41 34-46 (92)
74 1y02_A CARP2, FYVE-ring finger 32.5 26 0.00088 22.9 2.2 27 20-46 20-50 (120)
75 1z2q_A LM5-1; membrane protein 32.2 62 0.0021 19.2 3.8 26 19-44 21-50 (84)
76 1bor_A Transcription factor PM 32.1 19 0.00064 19.5 1.2 29 20-49 7-35 (56)
77 2l5u_A Chromodomain-helicase-D 31.8 61 0.0021 18.2 3.5 21 19-39 11-31 (61)
78 2kfq_A FP1; protein, de novo p 31.8 8.2 0.00028 17.7 -0.3 22 31-52 2-23 (32)
79 1srk_A Zinc finger protein ZFP 31.7 10 0.00036 17.3 0.1 23 30-52 6-28 (35)
80 2elm_A Zinc finger protein 406 31.2 13 0.00045 17.5 0.4 21 30-50 8-28 (37)
81 2elx_A Zinc finger protein 406 30.7 10 0.00034 17.2 -0.1 23 30-52 6-28 (35)
82 1lko_A Rubrerythrin all-iron(I 30.5 21 0.00073 24.5 1.6 8 20-27 156-163 (191)
83 2ej4_A Zinc finger protein ZIC 29.8 42 0.0014 18.7 2.6 36 17-52 11-46 (95)
84 2elp_A Zinc finger protein 406 29.8 20 0.00069 16.5 1.0 22 30-51 8-30 (37)
85 2elv_A Zinc finger protein 406 29.2 22 0.00074 16.2 1.1 23 30-52 8-30 (36)
86 2zet_C Melanophilin; complex, 29.0 39 0.0013 22.8 2.7 32 18-50 67-103 (153)
87 1dxg_A Desulforedoxin; non-hem 28.8 30 0.001 17.8 1.6 11 29-39 4-14 (36)
88 2lri_C Autoimmune regulator; Z 28.7 56 0.0019 18.9 3.0 22 20-41 13-34 (66)
89 3h0g_L DNA-directed RNA polyme 28.4 30 0.001 20.5 1.7 10 31-40 21-30 (63)
90 2elt_A Zinc finger protein 406 28.4 12 0.00042 17.0 0.0 22 30-51 8-29 (36)
91 1v5n_A PDI-like hypothetical p 28.3 37 0.0013 20.7 2.3 20 20-39 48-69 (89)
92 2ytb_A Zinc finger protein 32; 27.8 18 0.00062 17.1 0.6 25 29-53 9-33 (42)
93 1jm7_B BARD1, BRCA1-associated 27.6 16 0.00055 22.6 0.5 38 19-58 22-60 (117)
94 2lv2_A Insulinoma-associated p 27.6 39 0.0013 20.0 2.2 19 32-50 57-75 (85)
95 1lv3_A Hypothetical protein YA 27.2 18 0.00061 21.9 0.6 32 19-51 9-40 (68)
96 3j21_g 50S ribosomal protein L 26.9 27 0.00091 19.9 1.3 12 29-40 12-23 (51)
97 1pft_A TFIIB, PFTFIIBN; N-term 26.7 41 0.0014 18.0 2.1 9 31-39 24-32 (50)
98 2elr_A Zinc finger protein 406 26.7 11 0.00038 17.2 -0.4 22 30-51 8-29 (36)
99 1dl6_A Transcription factor II 26.5 77 0.0026 17.8 3.3 21 20-40 12-39 (58)
100 2jun_A Midline-1; B-BOX, TRIM, 26.4 31 0.001 20.5 1.6 32 20-52 4-39 (101)
101 1fp0_A KAP-1 corepressor; PHD 26.4 70 0.0024 19.8 3.3 25 17-41 23-47 (88)
102 3gj5_B Nuclear pore complex pr 25.9 32 0.0011 17.9 1.4 22 19-40 7-30 (34)
103 4gne_A Histone-lysine N-methyl 25.8 34 0.0012 21.9 1.8 23 20-43 59-81 (107)
104 2lcq_A Putative toxin VAPC6; P 25.7 17 0.00058 24.0 0.3 11 31-41 132-142 (165)
105 2zjr_Z 50S ribosomal protein L 25.6 36 0.0012 19.7 1.8 25 15-39 26-51 (60)
106 2ebr_A Nuclear pore complex pr 25.5 61 0.0021 17.9 2.6 28 14-41 6-35 (47)
107 3zyq_A Hepatocyte growth facto 25.4 65 0.0022 22.5 3.4 27 18-44 163-193 (226)
108 2yt5_A Metal-response element- 25.4 44 0.0015 18.7 2.1 23 19-41 6-33 (66)
109 2fc7_A ZZZ3 protein; structure 25.2 87 0.003 18.9 3.6 31 19-49 21-57 (82)
110 2elq_A Zinc finger protein 406 24.9 16 0.00053 16.8 0.0 22 30-51 8-29 (36)
111 2ee8_A Protein ODD-skipped-rel 24.3 57 0.002 18.5 2.5 36 18-53 16-67 (106)
112 2yw8_A RUN and FYVE domain-con 24.1 56 0.0019 19.4 2.5 29 19-48 19-51 (82)
113 1rim_A E6APC2 peptide; E6-bind 23.7 13 0.00045 17.1 -0.4 22 31-52 2-23 (33)
114 2elo_A Zinc finger protein 406 23.6 21 0.00072 16.3 0.4 22 30-51 8-29 (37)
115 1twf_L ABC10-alpha, DNA-direct 22.9 25 0.00087 21.0 0.7 14 28-41 25-38 (70)
116 1pvm_A Conserved hypothetical 22.8 24 0.00081 22.7 0.6 26 19-44 149-182 (184)
117 2emb_A Zinc finger protein 473 22.8 23 0.00078 17.0 0.4 24 30-53 11-34 (44)
118 2yu5_A Zinc finger protein 473 22.8 22 0.00077 17.1 0.4 25 29-53 10-34 (44)
119 2en2_A B-cell lymphoma 6 prote 22.7 24 0.00082 16.7 0.5 24 29-52 9-32 (42)
120 2ene_A Zinc finger protein 347 22.5 38 0.0013 16.3 1.3 25 29-53 10-34 (46)
121 4ayb_P DNA-directed RNA polyme 22.4 28 0.00097 19.8 0.8 12 30-41 2-13 (48)
122 2el5_A Zinc finger protein 268 22.4 22 0.00077 16.8 0.3 25 29-53 8-32 (42)
123 4b6d_A RAC GTPase-activating p 22.4 29 0.001 19.9 0.9 22 18-39 18-43 (61)
124 1njq_A Superman protein; zinc- 22.1 19 0.00065 16.9 0.0 24 30-53 5-28 (39)
125 2eow_A Zinc finger protein 347 22.0 42 0.0014 16.1 1.4 24 29-52 10-33 (46)
126 3e2u_E CAP-Gly domain-containi 21.9 22 0.00074 19.8 0.2 22 6-27 7-28 (42)
127 2em4_A Zinc finger protein 28 21.9 35 0.0012 16.5 1.1 24 29-52 10-33 (46)
128 1mm2_A MI2-beta; PHD, zinc fin 21.8 87 0.003 17.5 2.9 21 19-39 9-29 (61)
129 2epc_A Zinc finger protein 32; 21.7 22 0.00077 16.7 0.3 24 29-52 9-32 (42)
130 2ebq_A Nuclear pore complex pr 21.7 66 0.0022 17.9 2.3 25 16-40 8-34 (47)
131 3u50_C Telomerase-associated p 21.6 33 0.0011 23.7 1.2 20 21-40 44-68 (172)
132 2en3_A ZFP-95, zinc finger pro 21.5 24 0.00082 17.1 0.4 23 30-52 11-33 (46)
133 2yrj_A Zinc finger protein 473 21.5 42 0.0014 16.1 1.3 24 29-52 10-33 (46)
134 2yts_A Zinc finger protein 484 21.5 25 0.00086 17.0 0.4 25 29-53 10-34 (46)
135 2emj_A Zinc finger protein 28 21.5 40 0.0014 16.3 1.2 24 29-52 10-33 (46)
136 1joc_A EEA1, early endosomal a 21.4 59 0.002 20.9 2.3 29 19-48 69-101 (125)
137 2ytg_A ZFP-95, zinc finger pro 21.3 40 0.0014 16.2 1.2 25 29-53 10-34 (46)
138 1e4u_A Transcriptional repress 21.1 9 0.00031 22.8 -1.6 30 19-50 11-45 (78)
139 2yth_A Zinc finger protein 224 21.1 22 0.00074 17.4 0.1 25 29-53 10-34 (46)
140 2ytp_A Zinc finger protein 484 21.0 44 0.0015 16.1 1.3 24 29-52 10-33 (46)
141 2em7_A Zinc finger protein 224 21.0 26 0.00087 17.0 0.4 25 29-53 10-34 (46)
142 3iuf_A Zinc finger protein UBI 21.0 21 0.0007 18.1 0.0 23 30-52 6-28 (48)
143 2rpc_A Zinc finger protein ZIC 20.9 46 0.0016 20.3 1.7 34 19-52 13-46 (155)
144 2eor_A Zinc finger protein 224 20.9 45 0.0015 16.0 1.4 24 29-52 10-33 (46)
145 2ept_A Zinc finger protein 32; 20.8 27 0.00092 16.5 0.4 25 29-53 8-32 (41)
146 2eof_A Zinc finger protein 268 20.8 24 0.00082 16.8 0.2 25 29-53 10-34 (44)
147 2ytk_A Zinc finger protein 347 20.7 45 0.0015 16.0 1.3 24 29-52 10-33 (46)
148 1wfk_A Zinc finger, FYVE domai 20.7 91 0.0031 18.8 3.0 26 19-44 9-38 (88)
149 6rxn_A Rubredoxin; electron tr 20.6 30 0.001 19.1 0.6 8 31-38 4-11 (46)
150 2enh_A Zinc finger protein 28 20.5 26 0.0009 17.0 0.4 24 30-53 11-34 (46)
151 2yto_A Zinc finger protein 484 20.4 27 0.00091 17.0 0.4 24 29-52 10-33 (46)
152 2k4x_A 30S ribosomal protein S 20.3 82 0.0028 17.7 2.5 22 19-40 18-45 (55)
153 2ytf_A Zinc finger protein 268 20.2 46 0.0016 15.9 1.3 24 29-52 10-33 (46)
154 2eos_A B-cell lymphoma 6 prote 20.2 24 0.00083 16.8 0.2 25 29-53 9-33 (42)
155 2ely_A Zinc finger protein 224 20.2 27 0.00093 17.0 0.4 24 30-53 11-34 (46)
156 1e8j_A Rubredoxin; iron-sulfur 20.1 43 0.0015 18.8 1.3 11 31-41 3-13 (52)
157 3h0g_I DNA-directed RNA polyme 20.1 63 0.0022 20.4 2.2 23 19-41 4-36 (113)
No 1
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-18 Score=104.38 Aligned_cols=48 Identities=27% Similarity=0.753 Sum_probs=42.2
Q ss_pred cccccccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCC-Ccce
Q 047076 14 PKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNR-NVTQ 64 (86)
Q Consensus 14 ~~~~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r-~~~~ 64 (86)
.-+..+.+|.||+. .+||+||+|+++||||+|||.||++ |+++| ++++
T Consensus 7 ~~~~~~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k~Hk~~--C~~~~~~p~~ 55 (56)
T 2yqq_A 7 GLKCSTVVCVICLE-KPKYRCPACRVPYCSVVCFRKHKEQ--CNPETSGPSS 55 (56)
T ss_dssp CCCCCCCCCTTTCS-CCSEECTTTCCEESSHHHHHHHHHH--CCCCCSSCCC
T ss_pred ccCCCCCccCcCcC-CCeeeCCCCCCCeeCHHHHHHHHhh--CcCCcCCCCC
Confidence 34445678999999 9999999999999999999999997 99999 7753
No 2
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=99.54 E-value=9.1e-16 Score=93.68 Aligned_cols=41 Identities=34% Similarity=0.801 Sum_probs=36.4
Q ss_pred ccccccCCC---CCeeEeCCCCCcccccccccccccccccCCCCCCc
Q 047076 19 AAICQECKY---KVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNV 62 (86)
Q Consensus 19 ~~~C~vC~~---~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~~ 62 (86)
..+|.||+. +++||+||+|+++||||.|+|.|| .|++.+.+
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk---~Cse~F~~ 54 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHG---TCAENFYS 54 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHC---CGGGGTSC
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHh---HhCHHHHh
Confidence 469999995 679999999999999999999998 59987764
No 3
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=96.51 E-value=0.0014 Score=38.38 Aligned_cols=41 Identities=24% Similarity=0.633 Sum_probs=32.0
Q ss_pred ccccccccCCCCCeeEeCCCCC-cccccccc----cccccccccCCCCC
Q 047076 17 KEAAICQECKYKVSKYKCPGCS-IRTCSLAC----VKAHKQRTGCSGNR 60 (86)
Q Consensus 17 ~~~~~C~vC~~~~~kY~CP~C~-~~~CSl~C----~k~Hk~~~~C~g~r 60 (86)
.....|.+|+. .+..+|.+|. +.|||.+| |+.||. .|....
T Consensus 11 ~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~--~C~~~~ 56 (60)
T 2od1_A 11 DSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEKHHH--ICGQTL 56 (60)
T ss_dssp CCSSCCTTTSS-CCCEECTTTSCCEESSHHHHHHHHHHHTT--TSSCSS
T ss_pred CCCCccccCCC-cccccCCCCCCeeecCHHHHHHHHHHHhH--HHcccc
Confidence 34578999997 6899999997 56999999 566776 476543
No 4
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=95.82 E-value=0.0057 Score=35.70 Aligned_cols=33 Identities=24% Similarity=0.671 Sum_probs=26.9
Q ss_pred ccccccccCCCCCeeEeCCCCCc-ccccccccccc
Q 047076 17 KEAAICQECKYKVSKYKCPGCSI-RTCSLACVKAH 50 (86)
Q Consensus 17 ~~~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~H 50 (86)
.....|..|+. .+..+|.+|.. .|||.+|.+.|
T Consensus 13 ~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~~ 46 (60)
T 2dj8_A 13 DSSESCWNCGR-KASETCSGCNTARYCGSFCQHKD 46 (60)
T ss_dssp CCSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHT
T ss_pred CCCcccccCCC-CCcccCCCCCCEeeeCHHHHHHH
Confidence 34578999997 68999999976 69999996553
No 5
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=95.40 E-value=0.012 Score=35.86 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=33.0
Q ss_pred CCCCCcccccccccccCCCCCe--eEeCCCCCcccccccccccccccccCCCC
Q 047076 9 STNQNPKAKEAAICQECKYKVS--KYKCPGCSIRTCSLACVKAHKQRTGCSGN 59 (86)
Q Consensus 9 s~~~~~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~ 59 (86)
|++++.++.....|..|+.... .|+| +|+..+|+.- +|-+...|+..
T Consensus 5 ~~~~~~~~~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H---R~~e~H~C~fD 53 (64)
T 1wg2_A 5 SSGPSRPVRPNNRCFSCNKKVGVMGFKC-KCGSTFCGSH---RYPEKHECSFD 53 (64)
T ss_dssp CCCSSCCSCCSCSCTTTCCCCTTSCEEC-TTSCEECSSS---CSSTTTTCCCC
T ss_pred ccCCCCCCCcCCcChhhCCcccccCeEe-ecCCEecccC---CCccccCCCcc
Confidence 4555556666789999998643 6999 9999999962 33344566543
No 6
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=94.71 E-value=0.027 Score=34.34 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCCCCe--eEeCCCCCcccccccccccccccccCCC
Q 047076 10 TNQNPKAKEAAICQECKYKVS--KYKCPGCSIRTCSLACVKAHKQRTGCSG 58 (86)
Q Consensus 10 ~~~~~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl~C~k~Hk~~~~C~g 58 (86)
....+++.....|..|+.+.. .|+| +|+..+|+.- +|-+...|+-
T Consensus 6 ~~~~~~k~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H---Ry~e~H~C~f 52 (64)
T 1wfh_A 6 SGQPSPPQRPNRCTVCRKRVGLTGFMC-RCGTTFCGSH---RYPEVHGCTF 52 (64)
T ss_dssp SSCCCCCSSCCCCTTTCCCCCTTCEEC-SSSCEECTTT---CSTTTTTCCC
T ss_pred CccCCCCCcCCcChhhCCccCccCEEe-ecCCEecccc---CCcccCCCCc
Confidence 334455666789999998644 6999 8999999962 3333445653
No 7
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.68 E-value=0.022 Score=34.38 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=38.2
Q ss_pred cCCCCCCCCcccccccccccCCCCCeeEeCCCCCccccccccccccc
Q 047076 5 EGPTSTNQNPKAKEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 5 ~~p~s~~~~~~~~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
+.+-|-++.-+.+...+|.||+. -+-|-|-.=.-..|||+|-..|-
T Consensus 5 ~~~~sk~Qr~p~pgePvCvvCGr-yGeYICd~Td~DVCSlECK~~~l 50 (60)
T 2yqp_A 5 SSGFSKTQRWAEPGEPICVVCGR-YGEYICDKTDEDVCSLECKAKHL 50 (60)
T ss_dssp CCCSCCCCCCCCTTSCCCSSSSS-CCSEECSSSCCEESSHHHHHHHH
T ss_pred ccchhhhhcCCCCCCceEEEecC-ccceeecCCCcchhhHHHHHHHH
Confidence 34556677777788899999996 78999999999999999977665
No 8
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.018 Score=35.43 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=30.9
Q ss_pred CCcccccccccccCCCCCee-----EeCCCCCcccccccccccccccccCCCC
Q 047076 12 QNPKAKEAAICQECKYKVSK-----YKCPGCSIRTCSLACVKAHKQRTGCSGN 59 (86)
Q Consensus 12 ~~~~~~~~~~C~vC~~~~~k-----Y~CP~C~~~~CSl~C~k~Hk~~~~C~g~ 59 (86)
..+.+.....|.+|+..... |+| +|+..+|+.- +|.++..|+-.
T Consensus 8 ~~~~~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H---Ry~e~H~C~fD 56 (67)
T 1x4w_A 8 SRSKQKSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH---RLPEQHDCTFD 56 (67)
T ss_dssp CCCSCSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT---CSTGGGTCSSC
T ss_pred CccCCccCCcchhhCCeecccccCceEe-cCCCEehhcc---CCccccCCccc
Confidence 33444556899999997774 899 9999999963 33345566543
No 9
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=94.22 E-value=0.051 Score=34.74 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCCCe---eEeCCCCCcccccccccccccccccCCCC
Q 047076 12 QNPKAKEAAICQECKYKVS---KYKCPGCSIRTCSLACVKAHKQRTGCSGN 59 (86)
Q Consensus 12 ~~~~~~~~~~C~vC~~~~~---kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~ 59 (86)
...++.....|.+|+.... .|+| +|+..+|+.- ++.++..|+..
T Consensus 18 ~~~~k~~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~H---Ry~e~H~C~fD 64 (85)
T 1wff_A 18 LQTKKKIMKHCFLCGKKTGLATSFEC-RCGNNFCASH---RYAEAHGCNYD 64 (85)
T ss_dssp CCCCCCCCCBCSSSCCBCSSSSCEEC-TTCCEECTTT---CSTGGGTCCSC
T ss_pred cccCcccCccchhhCCeecccCCeEc-CCCCEecccC---CCccCCCCcch
Confidence 3345566789999998655 6999 6999999963 33355567653
No 10
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=94.18 E-value=0.014 Score=34.17 Aligned_cols=37 Identities=27% Similarity=0.716 Sum_probs=29.0
Q ss_pred ccccccCCCCCeeEeCCCCCc-cccccccccc----ccccccCCC
Q 047076 19 AAICQECKYKVSKYKCPGCSI-RTCSLACVKA----HKQRTGCSG 58 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~----Hk~~~~C~g 58 (86)
...|.+|+. ++..+|.+|.. .|||.+|.+. ||. .|..
T Consensus 17 ~~~C~~C~~-~~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~--~C~~ 58 (64)
T 2odd_A 17 SESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEKHHH--ICGQ 58 (64)
T ss_dssp SSSCTTTSS-CCCEEETTTSCCEESSHHHHHHHHHHHTT--TTTS
T ss_pred CCcCccccC-CCcccCCCCCChhhCCHHHHHHHHHHHhH--HHhc
Confidence 568999997 68999999965 5999999654 555 4654
No 11
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=93.80 E-value=0.021 Score=31.95 Aligned_cols=31 Identities=26% Similarity=0.680 Sum_probs=24.5
Q ss_pred ccccccCCCCCeeEeCCCCCc-ccccccccccc
Q 047076 19 AAICQECKYKVSKYKCPGCSI-RTCSLACVKAH 50 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~H 50 (86)
...|.+|+. ++..+|.+|.. .|||.+|.+.|
T Consensus 9 ~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~ 40 (52)
T 2jw6_A 9 EQSCVNCGR-EAMSECTGCHKVNYCSTFCQRKD 40 (52)
T ss_dssp --CCSSSSS-SCSEECTTTCSSEESSHHHHHHH
T ss_pred CCcCCCCCC-CCcCcCCCCCCEeecCHHHHHHH
Confidence 468999997 58999999976 69999996543
No 12
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=93.17 E-value=0.085 Score=32.97 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=31.1
Q ss_pred CcccccccccccCCCCCe--eEeCCCCCcccccccccccccccccCCCCCC
Q 047076 13 NPKAKEAAICQECKYKVS--KYKCPGCSIRTCSLACVKAHKQRTGCSGNRN 61 (86)
Q Consensus 13 ~~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~ 61 (86)
.+++.....|..|+.+.. .|+| +|+..+|+.- +|.+...|+-...
T Consensus 19 ~~~k~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~H---Ry~e~H~C~fDyk 65 (74)
T 1wfp_A 19 DPPKSTATRCLSCNKKVGVTGFKC-RCGSTFCGTH---RYPESHECQFDFK 65 (74)
T ss_dssp CCTTCCCCBCSSSCCBCTTTCEEC-TTSCEECTTT---CSTTTSCCCSCTT
T ss_pred ccCcccCccchhhcCcccccceEe-ccCCEecccc---CCCcCCCCcCchh
Confidence 344555689999997544 6999 9999999963 3444556765433
No 13
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=91.94 E-value=0.05 Score=32.84 Aligned_cols=38 Identities=21% Similarity=0.526 Sum_probs=29.3
Q ss_pred ccccccCCCCCeeEeCCCCCc-cccccccccc----ccccccCCCC
Q 047076 19 AAICQECKYKVSKYKCPGCSI-RTCSLACVKA----HKQRTGCSGN 59 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~-~~CSl~C~k~----Hk~~~~C~g~ 59 (86)
...|.+|+. ++..+|-+|.. .|||.+|.+. ||. .|...
T Consensus 15 ~~~C~~C~~-~~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~--~C~~~ 57 (70)
T 2d8q_A 15 RPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEKHGK--TCVLA 57 (70)
T ss_dssp CCBCSSSCC-BCCCBCTTTSCCBCSCHHHHHHTHHHHHH--HCCCC
T ss_pred CCcCCCCCC-cccccCCCCCCEeeCCHHHhHHHHHHHHH--HHHHH
Confidence 468999997 57889999985 5999999754 554 47644
No 14
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.49 E-value=0.037 Score=42.76 Aligned_cols=39 Identities=28% Similarity=0.613 Sum_probs=30.9
Q ss_pred ccccccccCCCC-CeeEeCCCCCc-cccccccc----ccccccccCC
Q 047076 17 KEAAICQECKYK-VSKYKCPGCSI-RTCSLACV----KAHKQRTGCS 57 (86)
Q Consensus 17 ~~~~~C~vC~~~-~~kY~CP~C~~-~~CSl~C~----k~Hk~~~~C~ 57 (86)
.....|..|... ....+|++|.. +|||.+|. +.||. .|.
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~--eC~ 91 (433)
T 3qww_A 47 ERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKL--ECS 91 (433)
T ss_dssp GTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTT--THH
T ss_pred ccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHH--HHH
Confidence 345789999974 46899999997 99999997 55766 474
No 15
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.07 E-value=0.06 Score=41.25 Aligned_cols=38 Identities=32% Similarity=0.883 Sum_probs=29.9
Q ss_pred cccccccCCC-CCeeEeCCCCCc-ccccccccc----cccccccCC
Q 047076 18 EAAICQECKY-KVSKYKCPGCSI-RTCSLACVK----AHKQRTGCS 57 (86)
Q Consensus 18 ~~~~C~vC~~-~~~kY~CP~C~~-~~CSl~C~k----~Hk~~~~C~ 57 (86)
....|..|.. .....+|++|.. +|||.+|.+ .||. .|.
T Consensus 46 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~--eC~ 89 (429)
T 3qwp_A 46 RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKR--ECK 89 (429)
T ss_dssp BTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHH--HHH
T ss_pred CCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHH--hhh
Confidence 4578999996 356899999998 999999976 4554 464
No 16
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=89.05 E-value=0.57 Score=29.14 Aligned_cols=30 Identities=27% Similarity=0.621 Sum_probs=23.2
Q ss_pred cccccccccccCCCCCe--eEeCCCCCcccccc
Q 047076 14 PKAKEAAICQECKYKVS--KYKCPGCSIRTCSL 44 (86)
Q Consensus 14 ~~~~~~~~C~vC~~~~~--kY~CP~C~~~~CSl 44 (86)
..+.....|..|+.+.. .|+|. |+..+|+.
T Consensus 20 ~~k~~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 20 LPKPKKNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp CCCSCTTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred cCCCcCCcChhhCCcccccCeecC-CCCEechh
Confidence 33444678999998533 69999 99999996
No 17
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=85.38 E-value=0.23 Score=38.89 Aligned_cols=39 Identities=26% Similarity=0.675 Sum_probs=29.8
Q ss_pred ccccccccCCCC-CeeEeCCCCCc-ccccccccc----cccccccCC
Q 047076 17 KEAAICQECKYK-VSKYKCPGCSI-RTCSLACVK----AHKQRTGCS 57 (86)
Q Consensus 17 ~~~~~C~vC~~~-~~kY~CP~C~~-~~CSl~C~k----~Hk~~~~C~ 57 (86)
....+|..|... ....+|++|.. .|||.+|.+ .||. .|.
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~--eC~ 91 (490)
T 3n71_A 47 LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN--ECA 91 (490)
T ss_dssp GTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHH--HHH
T ss_pred ccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHH--HhH
Confidence 346789999763 45799999998 499999975 5665 474
No 18
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.17 E-value=0.35 Score=28.69 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=30.9
Q ss_pred cccccCCCCC---eeEeCCCCCcccccccccccccccccCCC
Q 047076 20 AICQECKYKV---SKYKCPGCSIRTCSLACVKAHKQRTGCSG 58 (86)
Q Consensus 20 ~~C~vC~~~~---~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g 58 (86)
..|-.|+... +.|+||+|...+|--=-..+|....+|.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPg 57 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPG 57 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSST
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcC
Confidence 4599998743 26999999999997766777888878866
No 19
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=77.72 E-value=0.59 Score=27.95 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=24.3
Q ss_pred cccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCCCcceeeecCCCChh
Q 047076 18 EAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDN 74 (86)
Q Consensus 18 ~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~~~~~v~~~~~~~~ 74 (86)
.+..|..|+.-.-+-.||.|+..+.| .++..|.|-..|..-
T Consensus 4 ~mr~C~~Cg~YTLk~~CP~CG~~t~~----------------ahParfSP~Dky~~y 44 (60)
T 2aus_D 4 RIRKCPKCGRYTLKETCPVCGEKTKV----------------AHPPRFSPEDPYGEY 44 (60)
T ss_dssp CCEECTTTCCEESSSBCTTTCSBCEE----------------SSCCCCCSCCTTHHH
T ss_pred cceECCCCCCEEccccCcCCCCccCC----------------CCCCCCCCCCchHHH
Confidence 35667777654445557777765543 346666666665543
No 20
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=76.83 E-value=0.96 Score=27.71 Aligned_cols=29 Identities=24% Similarity=0.724 Sum_probs=23.2
Q ss_pred ccccccCCCCCeeEeCCCC-Cccccccccccc
Q 047076 19 AAICQECKYKVSKYKCPGC-SIRTCSLACVKA 49 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C-~~~~CSl~C~k~ 49 (86)
..-|.||+. .+.+||..| +-.||. .||+.
T Consensus 8 ~pWC~ICne-DAtlrC~gCdgDLYC~-rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNE-DATLRCAGCDGDLYCA-RCFRE 37 (67)
T ss_dssp CSSCTTTCS-CCCEEETTTTSEEECS-SHHHH
T ss_pred CCeeEEeCC-CCeEEecCCCCceehH-HHHHH
Confidence 458999997 599999999 666664 68775
No 21
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.08 E-value=2 Score=25.64 Aligned_cols=44 Identities=25% Similarity=0.537 Sum_probs=31.0
Q ss_pred ccccccccccc--CCCCC-eeEeCCCCCcccccccccccccccccCCCCC
Q 047076 14 PKAKEAAICQE--CKYKV-SKYKCPGCSIRTCSLACVKAHKQRTGCSGNR 60 (86)
Q Consensus 14 ~~~~~~~~C~v--C~~~~-~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r 60 (86)
.++.....|.+ |.+.. -.|+|..|+..||..- ++.++..|.+..
T Consensus 7 k~k~~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~H---R~~e~H~C~~~~ 53 (63)
T 1x4v_A 7 GRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKH---RHPLDHDCSGEG 53 (63)
T ss_dssp CCCTTCCCCCSTTCCCCCSSCCBCSSSCCBCCHHH---HSTTSSCCCSTT
T ss_pred CCcccCCCCCccCCCCCCccceECCCCCcccCccc---CCccCCcCCCCC
Confidence 34455688999 99743 3899999999999852 344455777653
No 22
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=76.08 E-value=0.77 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=22.5
Q ss_pred ccccccCCCCCeeEeCCCCCcccccccccccccccccCCCCCCcceeeecCCCChh
Q 047076 19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQRTGCSGNRNVTQFVPLSQFNDN 74 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~~~~~v~~~~~~~~ 74 (86)
+..|..|+.=.-+-.||.|+..+= ..++..|.|-..|..-
T Consensus 6 mr~C~~CgvYTLk~~CP~CG~~T~----------------~~hParfSp~Dky~~y 45 (60)
T 2apo_B 6 MKKCPKCGLYTLKEICPKCGEKTV----------------IPKPPKFSLEDRWGKY 45 (60)
T ss_dssp CEECTTTCCEESSSBCSSSCSBCB----------------CCCCCCCCTTCTTHHH
T ss_pred ceeCCCCCCEeccccCcCCCCcCC----------------CCCCCCCCCCcchHHH
Confidence 455666655434555665554432 3457777776666653
No 23
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=74.43 E-value=0.73 Score=23.64 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=18.5
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
++||+||.|....=...=++.|-.
T Consensus 1 ~~k~~CpvCk~q~Pd~kt~~~H~e 24 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDTLQIHVM 24 (28)
T ss_dssp CCCEECTTSSCEESSHHHHHHHHH
T ss_pred CCcccCccccccCcChHHHHHHHH
Confidence 468999999988777776666654
No 24
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=68.27 E-value=0.67 Score=26.12 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=24.0
Q ss_pred cccccccCCCCCeeEeCCCCCcccccccccccccc
Q 047076 18 EAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 18 ~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.+..|+.|+.-..+.+--+=..++||+.|.+..+.
T Consensus 5 ~~~~CE~CG~~g~~~~F~~ksKRFCS~~Carry~~ 39 (43)
T 2w0t_A 5 EPAVCEMCGIVGTREAFFSKTKRFCSVSCSRSYSS 39 (43)
T ss_dssp CEEECTTTCCEEETTTSCTTTSSSSSHHHHHHHHH
T ss_pred ceehhhhhcCcchhhhhccCCcceechhhhCcccc
Confidence 35679999964344443223679999999988765
No 25
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=60.30 E-value=9.9 Score=23.30 Aligned_cols=26 Identities=27% Similarity=0.741 Sum_probs=21.1
Q ss_pred ccccccCCCCC----eeEeCCCCCcccccc
Q 047076 19 AAICQECKYKV----SKYKCPGCSIRTCSL 44 (86)
Q Consensus 19 ~~~C~vC~~~~----~kY~CP~C~~~~CSl 44 (86)
...|.+|+..- -++-|..|+.-+|+-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCc
Confidence 45799999743 379999999999985
No 26
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=58.08 E-value=7.5 Score=21.03 Aligned_cols=11 Identities=18% Similarity=0.769 Sum_probs=5.3
Q ss_pred eEeCCCCCccc
Q 047076 31 KYKCPGCSIRT 41 (86)
Q Consensus 31 kY~CP~C~~~~ 41 (86)
.|+|+.|+..+
T Consensus 39 ~~~C~~C~k~f 49 (62)
T 1vd4_A 39 TFRCTFCHTEV 49 (62)
T ss_dssp EEBCSSSCCBC
T ss_pred CEECCCCCCcc
Confidence 35555554443
No 27
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=57.99 E-value=4.7 Score=21.85 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=9.9
Q ss_pred CeeEeCCCCCccc
Q 047076 29 VSKYKCPGCSIRT 41 (86)
Q Consensus 29 ~~kY~CP~C~~~~ 41 (86)
...|+||+|+...
T Consensus 7 ~~~~~C~~C~~~i 19 (39)
T 2i5o_A 7 EDQVPCEKCGSLV 19 (39)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCCcccccccCcC
Confidence 3578999998764
No 28
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=56.80 E-value=6 Score=21.67 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=14.9
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|+|+-|+..+-...=.+.|..
T Consensus 45 ~~~C~~C~k~f~~~~~L~~H~~ 66 (74)
T 2lce_A 45 PYRCNICGAQFNRPANLKTHTR 66 (74)
T ss_dssp SEECTTTCCEESCHHHHHHHHH
T ss_pred CEECCCCCchhCCHHHHHHHHH
Confidence 4788887777766666666654
No 29
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=53.23 E-value=7.9 Score=24.15 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=30.2
Q ss_pred cccccccc--CCCCC-eeEeCCCCCcccccccccccccccccCCCCCC
Q 047076 17 KEAAICQE--CKYKV-SKYKCPGCSIRTCSLACVKAHKQRTGCSGNRN 61 (86)
Q Consensus 17 ~~~~~C~v--C~~~~-~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~ 61 (86)
.....|.+ |+... -.|+|..|+..||..- ++.++..|.+...
T Consensus 23 ~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~H---R~~e~H~C~~~~~ 67 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELVAVICPYCEKNFCLRH---RHQSDHDCEKLEV 67 (86)
T ss_dssp SCCEECCSTTCCCEESSCEECTTTCCEECGGG---CSTGGGTCSSSSC
T ss_pred CCCCCCCCcCCCCCCccceECCCCCccccccc---CCccCCCCCCCcc
Confidence 34567999 99643 3899999999999852 4455567887543
No 30
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.13 E-value=2.6 Score=24.34 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=23.6
Q ss_pred eeEeCCCCCcccccccccccccccccCCC
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQRTGCSG 58 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~~~~C~g 58 (86)
..|.||+|++.|=.+.=.+.|..- .|..
T Consensus 11 ~~~~CPrCn~~f~~~~sLr~Hmky-cCp~ 38 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEALRGHMCY-CCPE 38 (49)
T ss_dssp SCCCCTTTCCCCSSHHHHHHHHHH-HCTT
T ss_pred CceeCCcccccccchHHHHhhhhh-cCcc
Confidence 589999999999888888999885 6654
No 31
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.74 E-value=12 Score=21.76 Aligned_cols=30 Identities=20% Similarity=0.538 Sum_probs=21.5
Q ss_pred cccccCCCCC---eeEeCCCCCccccccccccc
Q 047076 20 AICQECKYKV---SKYKCPGCSIRTCSLACVKA 49 (86)
Q Consensus 20 ~~C~vC~~~~---~kY~CP~C~~~~CSl~C~k~ 49 (86)
..|.+|+..+ ..|+|-.|.-..=...|+..
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 6899999643 58999999665444567654
No 32
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=51.12 E-value=4.6 Score=25.53 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=3.8
Q ss_pred eEeCCCCC
Q 047076 31 KYKCPGCS 38 (86)
Q Consensus 31 kY~CP~C~ 38 (86)
+|+|+.|+
T Consensus 35 ~y~C~vCG 42 (87)
T 1s24_A 35 KWICITCG 42 (87)
T ss_dssp EEEETTTT
T ss_pred eEECCCCC
Confidence 44444444
No 33
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=49.93 E-value=3.4 Score=17.81 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=13.7
Q ss_pred eEeCCCCCccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk 51 (86)
.|+|+.|+..+-...=.+.|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCCCCTTTHHHHHH
T ss_pred CCcCCCCCcccCCHHHHHHHH
Confidence 377888887776655555554
No 34
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=48.77 E-value=3.6 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=20.1
Q ss_pred cccccccCCCCCeeEeCCCCCcccccccccccc
Q 047076 18 EAAICQECKYKVSKYKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 18 ~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~H 50 (86)
....|..|+.......= +=..+|||..|-+.+
T Consensus 17 ~~~~C~~CG~~i~~~~~-~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAEQF-RGSKRFCSMTCAKRY 48 (49)
T ss_dssp SEEECTTTCCEEEGGGC-TTTSSSCSHHHHHHH
T ss_pred CCCcChhccCccccccC-CCCCccCCHHHHhhh
Confidence 34569999874333221 224689999997654
No 35
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=48.30 E-value=6.5 Score=24.41 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=10.1
Q ss_pred CeeEeCCCCCcc
Q 047076 29 VSKYKCPGCSIR 40 (86)
Q Consensus 29 ~~kY~CP~C~~~ 40 (86)
..+|+||.|+..
T Consensus 25 ~~~y~Cp~CG~~ 36 (83)
T 1vq8_Z 25 NEDHACPNCGED 36 (83)
T ss_dssp HSCEECSSSCCE
T ss_pred cccCcCCCCCCc
Confidence 469999999974
No 36
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=46.00 E-value=5.2 Score=17.36 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=15.7
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|.|+.|+..+-...=.+.|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHHT
T ss_pred CccCCCCCchhCCHHHHHHHHH
Confidence 4888888888776666666654
No 37
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=45.71 E-value=6.3 Score=24.13 Aligned_cols=13 Identities=46% Similarity=1.050 Sum_probs=9.8
Q ss_pred CCeeEeCCCCCcc
Q 047076 28 KVSKYKCPGCSIR 40 (86)
Q Consensus 28 ~~~kY~CP~C~~~ 40 (86)
+.++|+||.|+..
T Consensus 24 q~~ky~C~fCgk~ 36 (73)
T 1ffk_W 24 HKKKYKCPVCGFP 36 (73)
T ss_pred cccCccCCCCCCc
Confidence 4578899988863
No 38
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=45.63 E-value=3.8 Score=17.58 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=14.0
Q ss_pred EeCCCCCcccccccccccccc
Q 047076 32 YKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 32 Y~CP~C~~~~CSl~C~k~Hk~ 52 (86)
|+|+.|+..+-...-.+.|..
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 678888777766655555543
No 39
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=44.80 E-value=15 Score=22.45 Aligned_cols=40 Identities=30% Similarity=0.573 Sum_probs=28.6
Q ss_pred cccccc--CCCCCe-eEeCCCCCcccccccccccccccccCCCCCC
Q 047076 19 AAICQE--CKYKVS-KYKCPGCSIRTCSLACVKAHKQRTGCSGNRN 61 (86)
Q Consensus 19 ~~~C~v--C~~~~~-kY~CP~C~~~~CSl~C~k~Hk~~~~C~g~r~ 61 (86)
...|.+ |++... .|+|..|+..+|+.- ++.+...|.+...
T Consensus 14 g~~Cs~~~C~~~dflpf~C~~C~~~FC~~H---R~~e~H~C~~~~~ 56 (75)
T 1wys_A 14 GQHCQVQHCRQRDFLPFVCDGCSGIFCLEH---RSKDSHGCSEVNV 56 (75)
T ss_dssp CCCCSCTTTCCCSCCCEECTTTCCEECSTT---CSSGGGTCCCCSS
T ss_pred CCCcCcccCCCccceeeECcccCcCcCccc---CCccccCCCCCcc
Confidence 357888 997544 899999999999852 3344557876543
No 40
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=44.68 E-value=13 Score=20.17 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=9.4
Q ss_pred eEeCCCCCcccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~H 50 (86)
.|+|+.|+..+=...=.+.|
T Consensus 14 ~~~C~~C~k~f~~~~~L~~H 33 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILVQH 33 (72)
T ss_dssp CEECSSSCCEESSHHHHHHH
T ss_pred CccCCCCCCccCCHHHHHHH
Confidence 45555555544444444444
No 41
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.14 E-value=14 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.617 Sum_probs=16.4
Q ss_pred cccccccCCC------CCeeEeCCCCCccc
Q 047076 18 EAAICQECKY------KVSKYKCPGCSIRT 41 (86)
Q Consensus 18 ~~~~C~vC~~------~~~kY~CP~C~~~~ 41 (86)
....|..|+. ....+.|++|+..+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 3567888885 23378888887543
No 42
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=43.30 E-value=9.4 Score=16.37 Aligned_cols=20 Identities=20% Similarity=0.625 Sum_probs=12.6
Q ss_pred eEeCCCCCcccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~H 50 (86)
.|.|+.|+..+=...=.+.|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H 22 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKH 22 (27)
T ss_dssp CEECSSSSCEESSHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHH
Confidence 58888888776544444444
No 43
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=43.23 E-value=5.4 Score=26.48 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=7.2
Q ss_pred eEeCCCCCcc
Q 047076 31 KYKCPGCSIR 40 (86)
Q Consensus 31 kY~CP~C~~~ 40 (86)
.++||.|+.+
T Consensus 107 ~~~CP~Cgs~ 116 (139)
T 3a43_A 107 FLACPKCGSH 116 (139)
T ss_dssp GCSCSSSSCC
T ss_pred CCcCccccCC
Confidence 5778888754
No 44
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=48.32 E-value=5.3 Score=17.41 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=15.4
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|.|+-|+..+-...-.+.|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVR 24 (30)
Confidence 4788888877776666666654
No 45
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=41.37 E-value=6.6 Score=24.04 Aligned_cols=24 Identities=21% Similarity=0.582 Sum_probs=16.1
Q ss_pred ccccccccCCCCCe----eE--eCCCCCcc
Q 047076 17 KEAAICQECKYKVS----KY--KCPGCSIR 40 (86)
Q Consensus 17 ~~~~~C~vC~~~~~----kY--~CP~C~~~ 40 (86)
....+|.-|+.+.. .| +||.|+..
T Consensus 35 ~v~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 35 TVDILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp EEEEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred EeEEECCCCCCCccCCceeecccCcCCCCc
Confidence 33568999997433 24 89988754
No 46
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=41.11 E-value=8.1 Score=23.63 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.5
Q ss_pred CeeEeCCCCCccc
Q 047076 29 VSKYKCPGCSIRT 41 (86)
Q Consensus 29 ~~kY~CP~C~~~~ 41 (86)
.++|+||.|+...
T Consensus 24 ~~ky~C~fCgk~~ 36 (72)
T 3jyw_9 24 HARYDCSFCGKKT 36 (72)
T ss_dssp HSCBCCSSCCSSC
T ss_pred ccCccCCCCCCce
Confidence 4799999998664
No 47
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.90 E-value=6.1 Score=16.95 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=13.7
Q ss_pred eEeCCCCCccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk 51 (86)
.|+|+.|+..+-...-.+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~ 22 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHL 22 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHH
Confidence 478888887766555555553
No 48
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=47.02 E-value=5.7 Score=17.00 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=12.1
Q ss_pred eEeCCCCCccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk 51 (86)
.|.|+.|+..+=...=.+.|.
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHI 22 (26)
Confidence 367777776665544444443
No 49
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=40.53 E-value=31 Score=20.41 Aligned_cols=35 Identities=31% Similarity=0.725 Sum_probs=26.4
Q ss_pred ccccccccCCC---CCeeEeCCCCCccccccccccc-ccc
Q 047076 17 KEAAICQECKY---KVSKYKCPGCSIRTCSLACVKA-HKQ 52 (86)
Q Consensus 17 ~~~~~C~vC~~---~~~kY~CP~C~~~~CSl~C~k~-Hk~ 52 (86)
.....|.+|.. ..+.=.|-.|..-|| -.|.+. |..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C-~~hl~~~H~~ 66 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYC-DECLKATHPN 66 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEEC-HHHHHHHSCC
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhh-hhhhHhhcCC
Confidence 44578999974 456778999999998 567775 765
No 50
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.70 E-value=5.9 Score=17.15 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=13.9
Q ss_pred eEeCCCCCccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk 51 (86)
.|.|+.|+..+-...=.+.|.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~ 23 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMETHY 23 (28)
T ss_dssp SEECSSSCCEESCHHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHH
Confidence 488888887766555555554
No 51
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=39.69 E-value=11 Score=25.70 Aligned_cols=21 Identities=33% Similarity=0.792 Sum_probs=10.6
Q ss_pred ccccccCCC---CCeeEeCCCCCc
Q 047076 19 AAICQECKY---KVSKYKCPGCSI 39 (86)
Q Consensus 19 ~~~C~vC~~---~~~kY~CP~C~~ 39 (86)
.-+|.+||. ....-+||.|+.
T Consensus 138 ~~~C~~CG~i~~~~~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVDEAPEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEESCCCSBCTTTCC
T ss_pred eeEeCCCCCeeCCCCCCCCCCCCC
Confidence 345666664 112226666654
No 52
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.55 E-value=6.8 Score=16.85 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=15.1
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|.|+.|+..+-...=...|..
T Consensus 3 ~~~C~~C~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMRHLE 24 (30)
T ss_dssp CEECTTTCCEESCHHHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHHH
Confidence 5888888887766555555543
No 53
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=39.40 E-value=7.5 Score=24.79 Aligned_cols=20 Identities=25% Similarity=0.725 Sum_probs=9.1
Q ss_pred cccccCCCC----CeeE-eCCCCCc
Q 047076 20 AICQECKYK----VSKY-KCPGCSI 39 (86)
Q Consensus 20 ~~C~vC~~~----~~kY-~CP~C~~ 39 (86)
-.|..|+.. ...+ +||.|+.
T Consensus 74 ~~C~~CG~~~e~~~~~~~~CP~Cgs 98 (119)
T 2kdx_A 74 LECKDCSHVFKPNALDYGVCEKCHS 98 (119)
T ss_dssp EECSSSSCEECSCCSTTCCCSSSSS
T ss_pred EEcCCCCCEEeCCCCCCCcCccccC
Confidence 345555531 2234 5555544
No 54
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.39 E-value=8.4 Score=24.18 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=10.6
Q ss_pred CeeEeCCCCCccc
Q 047076 29 VSKYKCPGCSIRT 41 (86)
Q Consensus 29 ~~kY~CP~C~~~~ 41 (86)
.++|+||.|+...
T Consensus 33 ~~ky~CpfCGk~~ 45 (83)
T 3j21_i 33 RQKHTCPVCGRKA 45 (83)
T ss_dssp HSCBCCSSSCSSC
T ss_pred hcccCCCCCCCce
Confidence 4699999998763
No 55
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=39.24 E-value=21 Score=22.73 Aligned_cols=31 Identities=19% Similarity=0.576 Sum_probs=22.1
Q ss_pred cccccccCC--CCCeeEeCCCCCccccccccccc
Q 047076 18 EAAICQECK--YKVSKYKCPGCSIRTCSLACVKA 49 (86)
Q Consensus 18 ~~~~C~vC~--~~~~kY~CP~C~~~~CSl~C~k~ 49 (86)
....|.||. ....+|.|--|++- +=..|.+.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv-fH~~CL~r 46 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV-FHDGCLRR 46 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC-CCHHHHHH
T ss_pred CCcccCccccccccceecccccccc-ccHhhccc
Confidence 356899999 56779999988754 34455544
No 56
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.06 E-value=27 Score=18.99 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=14.4
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|+|+-|+..+=...=.+.|..
T Consensus 46 ~~~C~~C~~~f~~~~~L~~H~~ 67 (77)
T 2cot_A 46 PYKCDECGKAFIQRSHLIGHHR 67 (77)
T ss_dssp SEECSSSCCEESSHHHHHHHGG
T ss_pred CeeCCCCCCccCCHHHHHHHHH
Confidence 4777777776666666666654
No 57
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.84 E-value=4.4 Score=17.80 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=13.1
Q ss_pred eEeCCCCCccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk 51 (86)
.|+|+.|+..+=...-.+.|.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~ 23 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQAHM 23 (27)
T ss_dssp TEEETTTTEEESCHHHHHHHH
T ss_pred CcCCCCCCcccCCHHHHHHHH
Confidence 488888887665544444443
No 58
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=37.42 E-value=6.8 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=14.3
Q ss_pred eEeCCCCCcccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~H 50 (86)
.|.|+.|+..+-...=.+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHHH
T ss_pred CcCCcccCcccCChHHHHHH
Confidence 37888888877666666666
No 59
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=37.31 E-value=11 Score=16.03 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=12.6
Q ss_pred eEeCCCCCccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk 51 (86)
.|.|+.|+..+=...=.+.|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHHHH
T ss_pred CeECCCCCcccCCHHHHHHHH
Confidence 377888877665544444443
No 60
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=37.27 E-value=12 Score=24.89 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=10.1
Q ss_pred CeeEeCCCCCcc
Q 047076 29 VSKYKCPGCSIR 40 (86)
Q Consensus 29 ~~kY~CP~C~~~ 40 (86)
.++|+||.|+..
T Consensus 58 ~akytCPfCGk~ 69 (116)
T 3cc2_Z 58 NEDHACPNCGED 69 (116)
T ss_dssp HSCEECSSSCCE
T ss_pred ccCCcCCCCCCc
Confidence 479999999973
No 61
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=36.44 E-value=13 Score=24.24 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=10.5
Q ss_pred CeeEeCCCCCccc
Q 047076 29 VSKYKCPGCSIRT 41 (86)
Q Consensus 29 ~~kY~CP~C~~~~ 41 (86)
.++|+||.|+...
T Consensus 34 ~aky~CpfCgk~~ 46 (103)
T 4a17_Y 34 HAKYGCPFCGKVA 46 (103)
T ss_dssp HSCEECTTTCCEE
T ss_pred hcCCCCCCCCCce
Confidence 4799999998653
No 62
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=36.08 E-value=25 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=11.3
Q ss_pred ccccccccCCCCCeeE
Q 047076 17 KEAAICQECKYKVSKY 32 (86)
Q Consensus 17 ~~~~~C~vC~~~~~kY 32 (86)
-...+|.||+...+.|
T Consensus 15 ~g~h~c~vCgd~asfF 30 (87)
T 2lze_A 15 GGKHICAICGNNAEDY 30 (87)
T ss_dssp CCSSSCSSSSSSSSSC
T ss_pred CCCEEccCCCCccceE
Confidence 3457899999765555
No 63
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.77 E-value=12 Score=26.13 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=10.5
Q ss_pred cccccCCCC---CeeEeCCCCCc
Q 047076 20 AICQECKYK---VSKYKCPGCSI 39 (86)
Q Consensus 20 ~~C~vC~~~---~~kY~CP~C~~ 39 (86)
-+|.+||.- .+..+||.|+.
T Consensus 172 ~~C~~CG~i~~g~~p~~CP~C~~ 194 (202)
T 1yuz_A 172 HLCPICGYIHKGEDFEKCPICFR 194 (202)
T ss_dssp EECSSSCCEEESSCCSBCTTTCC
T ss_pred EEECCCCCEEcCcCCCCCCCCCC
Confidence 456666641 12246666654
No 64
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.54 E-value=11 Score=17.40 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=15.8
Q ss_pred CeeEeCCCCCccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
...|.|+.|+..+-...=.+.|.
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKHSLQAHL 29 (36)
T ss_dssp CCCEECTTTCCEESSHHHHHHHH
T ss_pred CCCEECCCCCceeCCHHHHHHHH
Confidence 34689998888776655555554
No 65
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=35.52 E-value=7.9 Score=22.53 Aligned_cols=20 Identities=35% Similarity=0.825 Sum_probs=16.8
Q ss_pred Ccccccccccccccccc-cCC
Q 047076 38 SIRTCSLACVKAHKQRT-GCS 57 (86)
Q Consensus 38 ~~~~CSl~C~k~Hk~~~-~C~ 57 (86)
+..|||-+|.+.|.... .|.
T Consensus 27 GK~YCSe~Ca~gH~~~~~~C~ 47 (55)
T 1jjd_A 27 GLYYCSEACADGHTGGSKGCG 47 (55)
T ss_dssp SCEESSHHHHHTSCSSCCCCS
T ss_pred CeEEehHHHHccCCCCCCCCC
Confidence 56789999999999886 673
No 66
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.48 E-value=30 Score=20.15 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=20.6
Q ss_pred cccccCCCCCe----eEeCCCCCcccccc
Q 047076 20 AICQECKYKVS----KYKCPGCSIRTCSL 44 (86)
Q Consensus 20 ~~C~vC~~~~~----kY~CP~C~~~~CSl 44 (86)
..|.+|+..-+ +.-|..||.-+|+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~ 40 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQE 40 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGG
T ss_pred CcccCCCCccCCccccccCCCCCEEEccc
Confidence 47999997543 68999999999984
No 67
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=41.70 E-value=7.9 Score=16.84 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=14.2
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|.|+-|+..+-...=.+.|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHVR 23 (29)
Confidence 3778877777666555555543
No 68
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=35.43 E-value=62 Score=19.61 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=19.2
Q ss_pred cccccccCCCCC-----eeEeCCCCCccccccccc
Q 047076 18 EAAICQECKYKV-----SKYKCPGCSIRTCSLACV 47 (86)
Q Consensus 18 ~~~~C~vC~~~~-----~kY~CP~C~~~~CSl~C~ 47 (86)
....|.||+... .--.|-.|...| =+.|+
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~f-H~~Cl 57 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAV-HQECY 57 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCC-CHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchh-hcccC
Confidence 357899999754 567788776643 33443
No 69
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=34.79 E-value=11 Score=24.01 Aligned_cols=13 Identities=38% Similarity=0.536 Sum_probs=10.7
Q ss_pred CeeEeCCCCCccc
Q 047076 29 VSKYKCPGCSIRT 41 (86)
Q Consensus 29 ~~kY~CP~C~~~~ 41 (86)
.++|+||.|+...
T Consensus 34 ~~ky~CpfCgk~~ 46 (92)
T 3iz5_m 34 HSKYFCEFCGKFA 46 (92)
T ss_dssp HSCBCCTTTCSSC
T ss_pred hccccCcccCCCe
Confidence 4799999998763
No 70
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=33.97 E-value=8 Score=17.95 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=15.1
Q ss_pred eeEeCCCCCccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
..|+|+.|+..+-...=.+.|.
T Consensus 10 k~~~C~~C~k~f~~~~~l~~H~ 31 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLALHR 31 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHHHH
T ss_pred CCccCCCCCcccCcHHHHHHHH
Confidence 4688998888776655555554
No 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.07 E-value=45 Score=19.79 Aligned_cols=31 Identities=23% Similarity=0.583 Sum_probs=18.1
Q ss_pred CCCCcccccccccccCCCCC-eeEeCCCCCcc
Q 047076 10 TNQNPKAKEAAICQECKYKV-SKYKCPGCSIR 40 (86)
Q Consensus 10 ~~~~~~~~~~~~C~vC~~~~-~kY~CP~C~~~ 40 (86)
++...-......|.||...- ...+|+.|+.+
T Consensus 6 ~~~~~y~~~i~~C~IC~~~i~~g~~C~~C~h~ 37 (74)
T 2ct0_A 6 SGRETYPDAVKICNICHSLLIQGQSCETCGIR 37 (74)
T ss_dssp CCCCCCSSSSCBCSSSCCBCSSSEECSSSCCE
T ss_pred cchhhccCCCCcCcchhhHcccCCccCCCCch
Confidence 33344445567899999632 24567655443
No 72
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=32.85 E-value=8.2 Score=16.56 Aligned_cols=20 Identities=30% Similarity=0.720 Sum_probs=12.9
Q ss_pred EeCCCCCccccccccccccc
Q 047076 32 YKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 32 Y~CP~C~~~~CSl~C~k~Hk 51 (86)
|.|+-|+..+-...=.+.|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKTHI 22 (30)
T ss_dssp CCCSSSSCCCSCSHHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHHH
Confidence 67777777766555555554
No 73
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=32.72 E-value=11 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.5
Q ss_pred CeeEeCCCCCccc
Q 047076 29 VSKYKCPGCSIRT 41 (86)
Q Consensus 29 ~~kY~CP~C~~~~ 41 (86)
.++|+||.|+...
T Consensus 34 ~~ky~CpfCgk~~ 46 (92)
T 3izc_m 34 HARYDCSFCGKKT 46 (92)
T ss_dssp HSCCCCSSSCSSC
T ss_pred hcCCcCCCCCCce
Confidence 4799999998653
No 74
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.53 E-value=26 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=21.4
Q ss_pred cccccCCCCCe----eEeCCCCCcccccccc
Q 047076 20 AICQECKYKVS----KYKCPGCSIRTCSLAC 46 (86)
Q Consensus 20 ~~C~vC~~~~~----kY~CP~C~~~~CSl~C 46 (86)
..|..|+..-. |.-|..||.-+|+-=+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs 50 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCS 50 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGE
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHh
Confidence 58999997433 7899999999998433
No 75
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.21 E-value=62 Score=19.23 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=21.2
Q ss_pred ccccccCCCCCe----eEeCCCCCcccccc
Q 047076 19 AAICQECKYKVS----KYKCPGCSIRTCSL 44 (86)
Q Consensus 19 ~~~C~vC~~~~~----kY~CP~C~~~~CSl 44 (86)
...|.+|+..-. +.-|..|+.-+|+-
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~ 50 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGD 50 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTG
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChH
Confidence 467999997533 78999999999984
No 76
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.06 E-value=19 Score=19.49 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=12.4
Q ss_pred cccccCCCCCeeEeCCCCCccccccccccc
Q 047076 20 AICQECKYKVSKYKCPGCSIRTCSLACVKA 49 (86)
Q Consensus 20 ~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~ 49 (86)
..|.||......-+--.|+-.+| ..|...
T Consensus 7 ~~C~IC~~~~~~p~~l~CgH~fC-~~Ci~~ 35 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLLPCLHTLC-SGCLEA 35 (56)
T ss_dssp SSCSSSCSSCBCCSCSTTSCCSB-TTTCSS
T ss_pred CCceEeCCccCCeEEcCCCCccc-HHHHcc
Confidence 34666654222212223555555 345443
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=31.85 E-value=61 Score=18.17 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=14.5
Q ss_pred ccccccCCCCCeeEeCCCCCc
Q 047076 19 AAICQECKYKVSKYKCPGCSI 39 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~ 39 (86)
...|.||+....--.|-.|..
T Consensus 11 ~~~C~vC~~~g~ll~CD~C~~ 31 (61)
T 2l5u_A 11 QDYCEVCQQGGEIILCDTCPR 31 (61)
T ss_dssp CSSCTTTSCCSSEEECSSSSC
T ss_pred CCCCccCCCCCcEEECCCCCh
Confidence 458999997655666665554
No 78
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=31.79 E-value=8.2 Score=17.69 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=16.3
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|+|+.|+..+-...=.+.|..
T Consensus 2 p~~C~~C~k~f~~~~~L~~H~~ 23 (32)
T 2kfq_A 2 AFACPACPKRFMRSDALSKHIK 23 (32)
T ss_dssp CSSSSSSCTTHHHHHTTSSSTT
T ss_pred CCCCCCCCcccCCHHHHHHHHH
Confidence 3788888888777766777765
No 79
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=31.67 E-value=10 Score=17.28 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=17.7
Q ss_pred eeEeCCCCCcccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
-.|+|+.|+..+-...=.+.|..
T Consensus 6 k~~~C~~C~k~f~~~~~l~~H~~ 28 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCARHLK 28 (35)
T ss_dssp SCEECSSSCCEESSHHHHHHHHG
T ss_pred cCeeCCCCCcccCCHHHHHHHHH
Confidence 46999999988877777777754
No 80
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.20 E-value=13 Score=17.46 Aligned_cols=21 Identities=29% Similarity=0.732 Sum_probs=16.3
Q ss_pred eeEeCCCCCcccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~H 50 (86)
-.|+|+.|+..+-...-.+.|
T Consensus 8 k~~~C~~C~k~f~~~~~L~~H 28 (37)
T 2elm_A 8 HLYYCSQCHYSSITKNCLKRH 28 (37)
T ss_dssp CEEECSSSSCEEECHHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHHH
Confidence 469999999888776666666
No 81
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.75 E-value=10 Score=17.19 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=16.5
Q ss_pred eeEeCCCCCcccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
-.|.|+-|+..+=...=.+.|..
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~ 28 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLRSHIR 28 (35)
T ss_dssp CSEECSSSCCEESSHHHHHHHHH
T ss_pred CCeECCCCcchhCCHHHHHHHHH
Confidence 45899999888766666666654
No 82
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.48 E-value=21 Score=24.47 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=4.8
Q ss_pred cccccCCC
Q 047076 20 AICQECKY 27 (86)
Q Consensus 20 ~~C~vC~~ 27 (86)
-+|.+||.
T Consensus 156 ~~C~~CG~ 163 (191)
T 1lko_A 156 WRCRNCGY 163 (191)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 45666664
No 83
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.82 E-value=42 Score=18.69 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=25.4
Q ss_pred ccccccccCCCCCeeEeCCCCCcccccccccccccc
Q 047076 17 KEAAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 17 ~~~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.+...|.-......+|.|+.|+..+=...=.+.|..
T Consensus 11 ~~~~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~ 46 (95)
T 2ej4_A 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT 46 (95)
T ss_dssp CCCCCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHH
T ss_pred CCCceeEeecCCcCCCcccccccccCCHHHHHHHHH
Confidence 334556665555668999999988877777777754
No 84
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.77 E-value=20 Score=16.46 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=14.6
Q ss_pred eeEeCCCCCcccccc-ccccccc
Q 047076 30 SKYKCPGCSIRTCSL-ACVKAHK 51 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl-~C~k~Hk 51 (86)
..|+|+-|+..+=.. .=.+.|.
T Consensus 8 k~~~C~~C~k~f~~~~~~L~~H~ 30 (37)
T 2elp_A 8 RAMKCPYCDFYFMKNGSDLQRHI 30 (37)
T ss_dssp CCEECSSSSCEECSSCHHHHHHH
T ss_pred CCeECCCCChhhccCHHHHHHHH
Confidence 468999988877654 4444443
No 85
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.19 E-value=22 Score=16.23 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=15.9
Q ss_pred eeEeCCCCCcccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
-.|+|+-|+..+=...=.+.|..
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elv_A 8 LLYDCHICERKFKNELDRDRHML 30 (36)
T ss_dssp CCEECSSSCCEESSHHHHHHHHT
T ss_pred CCeECCCCCCccCCHHHHHHHHH
Confidence 46999999887766555555543
No 86
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.02 E-value=39 Score=22.80 Aligned_cols=32 Identities=31% Similarity=0.775 Sum_probs=25.3
Q ss_pred cccccccCCCC-----CeeEeCCCCCcccccccccccc
Q 047076 18 EAAICQECKYK-----VSKYKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 18 ~~~~C~vC~~~-----~~kY~CP~C~~~~CSl~C~k~H 50 (86)
....|.+|... ..+-.|..|..+.|. .|-..+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~-~C~~~~ 103 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCK-SCSHAH 103 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECG-GGEECC
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhc-cccccc
Confidence 46799999974 357799999999999 776443
No 87
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=28.78 E-value=30 Score=17.79 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.4
Q ss_pred CeeEeCCCCCc
Q 047076 29 VSKYKCPGCSI 39 (86)
Q Consensus 29 ~~kY~CP~C~~ 39 (86)
...|+|+.|+.
T Consensus 4 ~~fY~C~~CGn 14 (36)
T 1dxg_A 4 GDVYKCELCGQ 14 (36)
T ss_dssp TCEEECTTTCC
T ss_pred ccEEEcCCCCc
Confidence 45899998864
No 88
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=28.73 E-value=56 Score=18.88 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=15.8
Q ss_pred cccccCCCCCeeEeCCCCCccc
Q 047076 20 AICQECKYKVSKYKCPGCSIRT 41 (86)
Q Consensus 20 ~~C~vC~~~~~kY~CP~C~~~~ 41 (86)
..|.||+....-..|-.|...|
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~ 34 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAF 34 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEE
T ss_pred CCcCCCCCCCeEEECCCCCCce
Confidence 4699999876677777776543
No 89
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=28.38 E-value=30 Score=20.48 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=4.5
Q ss_pred eEeCCCCCcc
Q 047076 31 KYKCPGCSIR 40 (86)
Q Consensus 31 kY~CP~C~~~ 40 (86)
.|+|..|+..
T Consensus 21 ~Y~C~~Cg~~ 30 (63)
T 3h0g_L 21 IYLCADCGAR 30 (63)
T ss_dssp CCBCSSSCCB
T ss_pred EEECCCCCCe
Confidence 4444444443
No 90
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.37 E-value=12 Score=17.04 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=14.7
Q ss_pred eeEeCCCCCccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
-.|.|+-|+..+=...=.+.|.
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elt_A 8 KPYKCPQCSYASAIKANLNVHL 29 (36)
T ss_dssp CSEECSSSSCEESSHHHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHHHH
Confidence 4688988887775555555554
No 91
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=28.34 E-value=37 Score=20.72 Aligned_cols=20 Identities=25% Similarity=0.888 Sum_probs=14.7
Q ss_pred cccccCCCC--CeeEeCCCCCc
Q 047076 20 AICQECKYK--VSKYKCPGCSI 39 (86)
Q Consensus 20 ~~C~vC~~~--~~kY~CP~C~~ 39 (86)
..|.+|+.. ...|+|..|+.
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~C~f 69 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDECDF 69 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTTCC
T ss_pred eEeCCCCCcCCCcEEEcCCCCC
Confidence 579999973 34799987763
No 92
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.83 E-value=18 Score=17.11 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=19.3
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|.|+.|+..+-...=.+.|...
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~H~~~ 33 (42)
T 2ytb_A 9 EKPYRCDQCGKAFSQKGSLIVHIRV 33 (42)
T ss_dssp CCSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred CCCeeCCCccchhCCHHHHHHHHHH
Confidence 3469999999988887777777653
No 93
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.60 E-value=16 Score=22.57 Aligned_cols=38 Identities=26% Similarity=0.509 Sum_probs=23.9
Q ss_pred ccccccCCCCCe-eEeCCCCCcccccccccccccccccCCC
Q 047076 19 AAICQECKYKVS-KYKCPGCSIRTCSLACVKAHKQRTGCSG 58 (86)
Q Consensus 19 ~~~C~vC~~~~~-kY~CP~C~~~~CSl~C~k~Hk~~~~C~g 58 (86)
...|.||..... ...-+.|+-.+| ..|...+-. ..|.-
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC-~~Ci~~~~~-~~CP~ 60 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFC-SNCVSDCIG-TGCPV 60 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBC-TTTGGGGTT-TBCSS
T ss_pred CCCCCCCChHhhCccEeCCCCCHHH-HHHHHHHhc-CCCcC
Confidence 467999986333 223336888887 568777755 35644
No 94
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=27.56 E-value=39 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=9.2
Q ss_pred EeCCCCCcccccccccccc
Q 047076 32 YKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 32 Y~CP~C~~~~CSl~C~k~H 50 (86)
|.|+-|+..+=...-.+.|
T Consensus 57 ~~C~~C~k~F~~~~~L~~H 75 (85)
T 2lv2_A 57 FPCKYCPATFYSSPGLTRH 75 (85)
T ss_dssp EECTTSSCEESSHHHHHHH
T ss_pred cCCCCCCCEeCCHHHHHHh
Confidence 5555555554444444444
No 95
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.21 E-value=18 Score=21.86 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=19.0
Q ss_pred ccccccCCCCCeeEeCCCCCccccccccccccc
Q 047076 19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
...|-+|+. +..++=-.=..+|||-.|-.+--
T Consensus 9 ~~~CP~Cgk-p~~W~~~~~~rPFCSeRCr~iDL 40 (68)
T 1lv3_A 9 TVNCPTCGK-TVVWGEISPFRPFCSKRCQLIDL 40 (68)
T ss_dssp EEECTTTCC-EEECSSSSSCCSSSSHHHHHHHH
T ss_pred cCcCCCCCC-cccccccCCCCcccCHHHHhhhH
Confidence 356888886 33222112256889999966543
No 96
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.88 E-value=27 Score=19.87 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=10.1
Q ss_pred CeeEeCCCCCcc
Q 047076 29 VSKYKCPGCSIR 40 (86)
Q Consensus 29 ~~kY~CP~C~~~ 40 (86)
-.++.||+|+.+
T Consensus 12 ~~k~iCpkC~a~ 23 (51)
T 3j21_g 12 FKKYVCLRCGAT 23 (51)
T ss_dssp SSEEECTTTCCE
T ss_pred hCCccCCCCCCc
Confidence 358999999887
No 97
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.73 E-value=41 Score=17.97 Aligned_cols=9 Identities=22% Similarity=0.766 Sum_probs=4.6
Q ss_pred eEeCCCCCc
Q 047076 31 KYKCPGCSI 39 (86)
Q Consensus 31 kY~CP~C~~ 39 (86)
.+.|+.|+.
T Consensus 24 elvC~~CG~ 32 (50)
T 1pft_A 24 EIVCAKCGY 32 (50)
T ss_dssp EEEESSSCC
T ss_pred eEECcccCC
Confidence 445555554
No 98
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.71 E-value=11 Score=17.24 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=14.2
Q ss_pred eeEeCCCCCccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
..|.|+-|+..+=...=.+.|.
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKSHK 29 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHHHH
Confidence 4578888877766555555554
No 99
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.51 E-value=77 Score=17.82 Aligned_cols=21 Identities=19% Similarity=0.626 Sum_probs=13.4
Q ss_pred cccccCCC-------CCeeEeCCCCCcc
Q 047076 20 AICQECKY-------KVSKYKCPGCSIR 40 (86)
Q Consensus 20 ~~C~vC~~-------~~~kY~CP~C~~~ 40 (86)
..|..|+. ..+.+.|..|+.-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 36888864 3346677777653
No 100
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=26.37 E-value=31 Score=20.54 Aligned_cols=32 Identities=31% Similarity=0.763 Sum_probs=25.9
Q ss_pred cccccCCC---CCeeEeCCCCCccccccccccc-ccc
Q 047076 20 AICQECKY---KVSKYKCPGCSIRTCSLACVKA-HKQ 52 (86)
Q Consensus 20 ~~C~vC~~---~~~kY~CP~C~~~~CSl~C~k~-Hk~ 52 (86)
..|.||.. .++.-.|..|+..+| -.|... |..
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C-~~Cl~~~h~~ 39 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYC-DECLKATHPN 39 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEEC-HHHHHHHSCS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHh-HHHCHHHhcc
Confidence 57999984 467888999999999 678876 764
No 101
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.35 E-value=70 Score=19.80 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=18.4
Q ss_pred ccccccccCCCCCeeEeCCCCCccc
Q 047076 17 KEAAICQECKYKVSKYKCPGCSIRT 41 (86)
Q Consensus 17 ~~~~~C~vC~~~~~kY~CP~C~~~~ 41 (86)
.....|.||+....-..|..|...|
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~f 47 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCF 47 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEE
T ss_pred CCCCcCcCcCCCCCEEECCCCCCce
Confidence 4456899999876677777776654
No 102
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=25.85 E-value=32 Score=17.93 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=14.6
Q ss_pred ccccccCCC--CCeeEeCCCCCcc
Q 047076 19 AAICQECKY--KVSKYKCPGCSIR 40 (86)
Q Consensus 19 ~~~C~vC~~--~~~kY~CP~C~~~ 40 (86)
.=-|.+|.. ....-+|..|+.+
T Consensus 7 ~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 7 SWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp CEECTTTCCEECSSCSBCTTTCCB
T ss_pred ceECCeeEeECccccCEEcccCCc
Confidence 345777775 3457788888754
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=25.83 E-value=34 Score=21.87 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=17.7
Q ss_pred cccccCCCCCeeEeCCCCCccccc
Q 047076 20 AICQECKYKVSKYKCPGCSIRTCS 43 (86)
Q Consensus 20 ~~C~vC~~~~~kY~CP~C~~~~CS 43 (86)
-.|.+|+. .+.|.|..|-.-||.
T Consensus 59 c~C~~C~k-~~~~~C~~Cp~sfC~ 81 (107)
T 4gne_A 59 HQCDECSS-AAVSFCEFCPHSFCK 81 (107)
T ss_dssp GBCTTTCS-BCCEECSSSSCEECT
T ss_pred CCCCcCCC-CCCcCcCCCCcchhh
Confidence 36888886 467999999888764
No 104
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.65 E-value=17 Score=23.98 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=5.5
Q ss_pred eEeCCCCCccc
Q 047076 31 KYKCPGCSIRT 41 (86)
Q Consensus 31 kY~CP~C~~~~ 41 (86)
.|+|+.|+..|
T Consensus 132 ~y~C~~Cg~~~ 142 (165)
T 2lcq_A 132 RYVCIGCGRKF 142 (165)
T ss_dssp CEEESSSCCEE
T ss_pred EEECCCCCCcc
Confidence 45555555443
No 105
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=25.64 E-value=36 Score=19.69 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=16.1
Q ss_pred ccccccccccCCC-CCeeEeCCCCCc
Q 047076 15 KAKEAAICQECKY-KVSKYKCPGCSI 39 (86)
Q Consensus 15 ~~~~~~~C~vC~~-~~~kY~CP~C~~ 39 (86)
..+....|..||+ ...-.-||.|+.
T Consensus 26 ~~p~l~~c~~cG~~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKLSHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCEECTTBCCTTTCB
T ss_pred cCCCceECCCCCCEeCCceEcCCCCc
Confidence 4455677888886 334567777773
No 106
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=61 Score=17.95 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=19.2
Q ss_pred cccccccccccCCC--CCeeEeCCCCCccc
Q 047076 14 PKAKEAAICQECKY--KVSKYKCPGCSIRT 41 (86)
Q Consensus 14 ~~~~~~~~C~vC~~--~~~kY~CP~C~~~~ 41 (86)
..+...--|.+|.. .....+|..|+.+-
T Consensus 6 k~~~gsW~C~~C~v~N~a~~~kC~aC~~pk 35 (47)
T 2ebr_A 6 SGPEGSWDCELCLVQNKADSTKCLACESAK 35 (47)
T ss_dssp SSCCSSCCCSSSCCCCCSSCSBCSSSCCBC
T ss_pred cCCCCeeECCeeecCCcCCcceecCcCCCC
Confidence 33445667888876 34488999888763
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.42 E-value=65 Score=22.48 Aligned_cols=27 Identities=26% Similarity=0.722 Sum_probs=21.4
Q ss_pred cccccccCCCCCe----eEeCCCCCcccccc
Q 047076 18 EAAICQECKYKVS----KYKCPGCSIRTCSL 44 (86)
Q Consensus 18 ~~~~C~vC~~~~~----kY~CP~C~~~~CSl 44 (86)
....|.+|+..-+ ++-|..||.-+|+-
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~ 193 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGK 193 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTT
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChh
Confidence 3468999996433 78999999999983
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=25.40 E-value=44 Score=18.67 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=16.7
Q ss_pred ccccccCCCC-----CeeEeCCCCCccc
Q 047076 19 AAICQECKYK-----VSKYKCPGCSIRT 41 (86)
Q Consensus 19 ~~~C~vC~~~-----~~kY~CP~C~~~~ 41 (86)
..+|.||+.. ..-..|..|...|
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~ 33 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGY 33 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEE
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHH
Confidence 4589999975 4577788777654
No 109
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.18 E-value=87 Score=18.85 Aligned_cols=31 Identities=16% Similarity=0.552 Sum_probs=22.0
Q ss_pred ccccccCCCCC---eeEeCCCCCc---cccccccccc
Q 047076 19 AAICQECKYKV---SKYKCPGCSI---RTCSLACVKA 49 (86)
Q Consensus 19 ~~~C~vC~~~~---~kY~CP~C~~---~~CSl~C~k~ 49 (86)
...|..|+..+ ..|+|-.|.- ..=...|+..
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhC
Confidence 45799999754 4799999986 4444577654
No 110
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.89 E-value=16 Score=16.79 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=15.4
Q ss_pred eeEeCCCCCccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
-.|.|+-|+..+=...=.+.|.
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNLKAHM 29 (36)
T ss_dssp CSEECSSSSCEESCHHHHHHHH
T ss_pred CCccCCCCCchhCCHHHHHHHH
Confidence 4688998888776665555554
No 111
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=24.29 E-value=57 Score=18.48 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=25.3
Q ss_pred cccccccCCCC----------------CeeEeCCCCCccccccccccccccc
Q 047076 18 EAAICQECKYK----------------VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 18 ~~~~C~vC~~~----------------~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
..-.|.+|+.. ...|.|+.|+..+=...=.+.|...
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 67 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGG
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHH
Confidence 34578888852 2358999998888777777777553
No 112
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.10 E-value=56 Score=19.35 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=22.1
Q ss_pred ccccccCCCCCe----eEeCCCCCcccccccccc
Q 047076 19 AAICQECKYKVS----KYKCPGCSIRTCSLACVK 48 (86)
Q Consensus 19 ~~~C~vC~~~~~----kY~CP~C~~~~CSl~C~k 48 (86)
...|.+|+..-+ +.-|..||.-+|+- |..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~-Cs~ 51 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNT-CSS 51 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSG-GGC
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChH-HhC
Confidence 457999997433 68999999999983 443
No 113
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.67 E-value=13 Score=17.10 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=15.5
Q ss_pred eEeCCCCCcccccccccccccc
Q 047076 31 KYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 31 kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.|.|+-|+..+=...-.+.|..
T Consensus 2 p~~C~~C~k~F~~~~~L~~H~~ 23 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSKHIT 23 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHHHHH
T ss_pred cccCCCCCchhCCHHHHHHHHH
Confidence 3778888887766666666654
No 114
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.60 E-value=21 Score=16.34 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=14.8
Q ss_pred eeEeCCCCCccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHK 51 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk 51 (86)
..|.|+.|+..+=...=.+.|.
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~ 29 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLIKSHI 29 (37)
T ss_dssp CCCEETTTTEECSSHHHHHHHH
T ss_pred CCcCCCCCCCccCCHHHHHHHH
Confidence 4688888887776655555554
No 115
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.86 E-value=25 Score=20.99 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=10.3
Q ss_pred CCeeEeCCCCCccc
Q 047076 28 KVSKYKCPGCSIRT 41 (86)
Q Consensus 28 ~~~kY~CP~C~~~~ 41 (86)
+.-.|+|+.|+...
T Consensus 25 ~~v~Y~C~~CG~~~ 38 (70)
T 1twf_L 25 ATLKYICAECSSKL 38 (70)
T ss_dssp CCCCEECSSSCCEE
T ss_pred ceEEEECCCCCCcc
Confidence 45678888888764
No 116
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=22.81 E-value=24 Score=22.65 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=18.5
Q ss_pred ccccccCCC--------CCeeEeCCCCCcccccc
Q 047076 19 AAICQECKY--------KVSKYKCPGCSIRTCSL 44 (86)
Q Consensus 19 ~~~C~vC~~--------~~~kY~CP~C~~~~CSl 44 (86)
..+|.+|+. ..++|.|+.|..+.|=+
T Consensus 149 ~~~~~~~~~~~~~~v~~~~g~~~c~~c~~~~~~~ 182 (184)
T 1pvm_A 149 QHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDY 182 (184)
T ss_dssp CCBCTTTSSSBEEEEECTTSCEEEEEESCTTCCC
T ss_pred eeeccccCCccccceEEECCEEEccccCCcccCc
Confidence 345666664 45689999999888744
No 117
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.76 E-value=23 Score=17.03 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=18.8
Q ss_pred eeEeCCCCCccccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
..|+|+.|+..+=...=.+.|...
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2emb_A 11 KRYECSKCQATFNLRKHLIQHQKT 34 (44)
T ss_dssp SSEECTTTCCEESCHHHHHHHGGG
T ss_pred CCeECCCCCCccCCHHHHHHHHHH
Confidence 469999999988877777777653
No 118
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.75 E-value=22 Score=17.07 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=19.0
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|+|+.|+..+=...=.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2yu5_A 10 ENPFKCSKCDRVFTQRNYLVQHERT 34 (44)
T ss_dssp CCSEECSSSSCEESSSHHHHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHHHhHh
Confidence 3469999999988877777777653
No 119
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.70 E-value=24 Score=16.70 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=17.6
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.-.|+|+.|+..+=...=.+.|..
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~H~~ 32 (42)
T 2en2_A 9 EKPYKCETCGARFVQVAHLRAHVL 32 (42)
T ss_dssp SCSEECTTTCCEESSHHHHHHHTH
T ss_pred CCCEeCCCcChhhCCHHHHHHHHH
Confidence 346999999988877666666654
No 120
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.46 E-value=38 Score=16.33 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.9
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|+|+.|+..+=...=.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2ene_A 10 EKPYKCNECGKVFRHNSYLSRHQRI 34 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHHHHTT
T ss_pred CCCeECCCCCchhCChHHHHHHHhh
Confidence 3469999999888777777777653
No 121
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.40 E-value=28 Score=19.81 Aligned_cols=12 Identities=25% Similarity=0.622 Sum_probs=6.9
Q ss_pred eeEeCCCCCccc
Q 047076 30 SKYKCPGCSIRT 41 (86)
Q Consensus 30 ~kY~CP~C~~~~ 41 (86)
+.|+|-||+..+
T Consensus 2 ~iY~C~rCg~~f 13 (48)
T 4ayb_P 2 AVYRCGKCWKTF 13 (48)
T ss_dssp ---CCCCTTTTC
T ss_pred cEEEeeccCCCc
Confidence 468888888754
No 122
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=22.39 E-value=22 Score=16.81 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=19.2
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|.|+.|+..+=...=.+.|...
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~ 32 (42)
T 2el5_A 8 ENPYECSECGKAFNRKDQLISHQRT 32 (42)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred CCCccCCCcChhhCCHHHHHHHHHh
Confidence 3469999999988877777777653
No 123
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=22.37 E-value=29 Score=19.87 Aligned_cols=22 Identities=23% Similarity=0.751 Sum_probs=15.9
Q ss_pred cccccccCCCCC----eeEeCCCCCc
Q 047076 18 EAAICQECKYKV----SKYKCPGCSI 39 (86)
Q Consensus 18 ~~~~C~vC~~~~----~kY~CP~C~~ 39 (86)
....|.+|+... .-|+|-.|++
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSC
T ss_pred CCcccccccCEEEEeeEeeECCCCCC
Confidence 357899998643 3499998764
No 124
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.10 E-value=19 Score=16.92 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=18.4
Q ss_pred eeEeCCCCCccccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
-.|+|+-|+..+=+..=.+.|...
T Consensus 5 k~~~C~~C~k~f~~~~~L~~H~~~ 28 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQALGGHMNV 28 (39)
T ss_dssp SSEECTTTCCEESSHHHHHHHHHT
T ss_pred CceECCCCCcccCCHHHHHHHHHH
Confidence 469999999888777777777653
No 125
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.04 E-value=42 Score=16.09 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=18.0
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|+|+.|+..+=...=.+.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2eow_A 10 EKPYKCNECGKAFRARSSLAIHQA 33 (46)
T ss_dssp CCCEECTTSCCEESSHHHHHHHHH
T ss_pred CCCeeccccCChhcCHHHHHHHHH
Confidence 346999999988877766666654
No 126
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=21.88 E-value=22 Score=19.78 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=7.2
Q ss_pred CCCCCCCCcccccccccccCCC
Q 047076 6 GPTSTNQNPKAKEAAICQECKY 27 (86)
Q Consensus 6 ~p~s~~~~~~~~~~~~C~vC~~ 27 (86)
||.|....-.......|.+|.+
T Consensus 7 pP~s~~h~~~~~eRpYCe~CEV 28 (42)
T 3e2u_E 7 PPHSTHHGSRGEERPYCEICEM 28 (42)
T ss_dssp -------------CCEETTTTE
T ss_pred CCcccccCCCcccCccccccee
Confidence 4555444444455778988875
No 127
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.86 E-value=35 Score=16.53 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=18.3
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|+|+.|+..+=...=.+.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2em4_A 10 QRPYECIECGKAFKTKSSLICHRR 33 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHHHHH
T ss_pred CcCcCCCCCCCccCCHHHHHHHHH
Confidence 346999999988877777777754
No 128
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.75 E-value=87 Score=17.49 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=13.1
Q ss_pred ccccccCCCCCeeEeCCCCCc
Q 047076 19 AAICQECKYKVSKYKCPGCSI 39 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~ 39 (86)
...|.||+....--.|-.|..
T Consensus 9 ~~~C~vC~~~g~ll~Cd~C~~ 29 (61)
T 1mm2_A 9 MEFCRVCKDGGELLCCDTCPS 29 (61)
T ss_dssp CSSCTTTCCCSSCBCCSSSCC
T ss_pred CCcCCCCCCCCCEEEcCCCCH
Confidence 457999997544555555443
No 129
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=21.75 E-value=22 Score=16.74 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=18.2
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|.|+.|+..+-...=.+.|..
T Consensus 9 ~~~~~C~~C~k~f~~~~~l~~H~~ 32 (42)
T 2epc_A 9 ETPYLCGQCGKSFTQRGSLAVHQR 32 (42)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHhh
Confidence 346999999988877776777754
No 130
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.70 E-value=66 Score=17.90 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=17.7
Q ss_pred cccccccccCCC--CCeeEeCCCCCcc
Q 047076 16 AKEAAICQECKY--KVSKYKCPGCSIR 40 (86)
Q Consensus 16 ~~~~~~C~vC~~--~~~kY~CP~C~~~ 40 (86)
+...--|.+|.. .....+|..|+.+
T Consensus 8 ~~g~W~C~~C~v~N~a~~~kC~aCetp 34 (47)
T 2ebq_A 8 VIGTWDCDTCLVQNKPEAIKCVACETP 34 (47)
T ss_dssp CSSSEECSSSCCEECSSCSBCSSSCCB
T ss_pred CCCceECCeeeccCccCCceecCcCCC
Confidence 344566888876 4458889988875
No 131
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.62 E-value=33 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=13.3
Q ss_pred ccccCCCCC-----eeEeCCCCCcc
Q 047076 21 ICQECKYKV-----SKYKCPGCSIR 40 (86)
Q Consensus 21 ~C~vC~~~~-----~kY~CP~C~~~ 40 (86)
-|..|+.+- +.|+|++|+..
T Consensus 44 ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCEEEETTTEEEETTTTEE
T ss_pred hchhhCCEeeeCCCCeEECCCCCCC
Confidence 466676543 46888888875
No 132
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.54 E-value=24 Score=17.12 Aligned_cols=23 Identities=13% Similarity=0.399 Sum_probs=17.5
Q ss_pred eeEeCCCCCcccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
-.|+|+.|+..+-...=.+.|..
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~ 33 (46)
T 2en3_A 11 KPFQCKECGMNFSWSCSLFKHLR 33 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHHHH
T ss_pred CCeeCcccChhhCCHHHHHHHHH
Confidence 46999999988877776666653
No 133
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.49 E-value=42 Score=16.07 Aligned_cols=24 Identities=21% Similarity=0.474 Sum_probs=18.4
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|+|+.|+..+=...=.+.|..
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQKANLTQHQR 33 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHT
T ss_pred CCCeECCCCCCccCCHHHHHHHHH
Confidence 346999999988877777777764
No 134
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.49 E-value=25 Score=16.99 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=19.3
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
.-.|+|+.|+..+=...=.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2yts_A 10 EKPYICNECGKSFIQKSHLNRHRRI 34 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred CcCEECCCCChhhCChHHHHHHHHh
Confidence 3469999999988887777777653
No 135
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=21.46 E-value=40 Score=16.30 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=17.7
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|+|+.|+..+=...=.+.|..
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~ 33 (46)
T 2emj_A 10 EKPFECAECGKSFSISSQLATHQR 33 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHH
T ss_pred CCCEECCCCCcccCCHHHHHHHHH
Confidence 346999999988877666666654
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.37 E-value=59 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.605 Sum_probs=22.3
Q ss_pred ccccccCCCCC----eeEeCCCCCcccccccccc
Q 047076 19 AAICQECKYKV----SKYKCPGCSIRTCSLACVK 48 (86)
Q Consensus 19 ~~~C~vC~~~~----~kY~CP~C~~~~CSl~C~k 48 (86)
...|.+|+..- -++-|..||.-+|+ .|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~-~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCA-ECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECG-GGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEECh-HHhC
Confidence 45799999743 36899999999998 3543
No 137
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.29 E-value=40 Score=16.25 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=19.7
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|+|+-|+..+=...=.+.|...
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRVHLTQHQRV 34 (46)
T ss_dssp CCSEECTTTCCEESSSHHHHTTGGG
T ss_pred CCCeECCCCCcccCCHHHHHHHHHH
Confidence 3469999999988887777777653
No 138
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.09 E-value=9 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.605 Sum_probs=15.1
Q ss_pred ccccccCCCCCe-----eEeCCCCCcccccccccccc
Q 047076 19 AAICQECKYKVS-----KYKCPGCSIRTCSLACVKAH 50 (86)
Q Consensus 19 ~~~C~vC~~~~~-----kY~CP~C~~~~CSl~C~k~H 50 (86)
...|.||..... .+.| .||-.+|. .|+...
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CGH~fC~-~Cl~~~ 45 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCGYQICR-FCWHRI 45 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTSCCCCH-HHHHHH
T ss_pred CCcCCccCccCcccccccccc-CCCCCcCH-HHHHHH
Confidence 456888876221 0111 27776663 455443
No 139
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=22 Score=17.39 Aligned_cols=25 Identities=16% Similarity=0.450 Sum_probs=19.4
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
.-.|.|+.|+..+=...=.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2yth_A 10 EKPFQCEECGKRFTQNSHLHSHQRV 34 (46)
T ss_dssp SSSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred CcCCCCCCCCcccCCHHHHHHHHHh
Confidence 3469999999988888777777653
No 140
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.05 E-value=44 Score=16.15 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=18.3
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.-.|+|+.|+..+=...=.+.|..
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~ 33 (46)
T 2ytp_A 10 ERHYECSECGKAFARKSTLIMHQR 33 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHT
T ss_pred CCCeECCcCCcccCCHHHHHHHHH
Confidence 346999999988877777777755
No 141
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.04 E-value=26 Score=17.03 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=19.1
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|+|+.|+..+=...=.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2em7_A 10 EKPYKCEECGKGFICRRDLYTHHMV 34 (46)
T ss_dssp CCSEECSSSCCEESCHHHHHHHGGG
T ss_pred CcCccCCCccchhCCHHHHHHHHHH
Confidence 3469999999888777777777653
No 142
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=21.03 E-value=21 Score=18.09 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=18.0
Q ss_pred eeEeCCCCCcccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
-.|+|+.|+..+-...=.+.|..
T Consensus 6 kp~~C~~C~k~F~~~~~L~~H~~ 28 (48)
T 3iuf_A 6 KPYACDICGKRYKNRPGLSYHYA 28 (48)
T ss_dssp SCEECTTTCCEESSHHHHHHHHH
T ss_pred cCEECCCcCcccCCHHHHHHHhh
Confidence 46999999988877777777765
No 143
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=20.94 E-value=46 Score=20.33 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=25.0
Q ss_pred ccccccCCCCCeeEeCCCCCcccccccccccccc
Q 047076 19 AAICQECKYKVSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 19 ~~~C~vC~~~~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|..-..+...|.|+.|+..+=+..=.+.|..
T Consensus 13 ~~~c~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~ 46 (155)
T 2rpc_A 13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT 46 (155)
T ss_dssp CBCCCBCCTTCCSSSCCCCCCCBSSHHHHHHHHH
T ss_pred CeeEEeechhhcccccccCCcccCCHHHHHHHHH
Confidence 4456655666778889988888888777777764
No 144
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=45 Score=15.96 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=17.5
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|+|+.|+..+=...=.+.|..
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2eor_A 10 EKPYNCEECGKAFIHDSQLQEHQR 33 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHHHHH
T ss_pred CcCccCCCCCCCcCCHHHHHHHHH
Confidence 346999999888877666666654
No 145
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.80 E-value=27 Score=16.47 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=18.8
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|+|+-|+..+=...=.+.|...
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~ 32 (41)
T 2ept_A 8 QRVYECQECGKSFRQKGSLTLHERI 32 (41)
T ss_dssp CCCEECSSSCCEESSHHHHHHHGGG
T ss_pred CCCeECCCCCCCcCCHHHHHHHHHH
Confidence 3469999999888777777777653
No 146
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.76 E-value=24 Score=16.82 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=18.8
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|.|+.|+..+=...=.+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2eof_A 10 EKPYECNECQKAFNTKSNLMVHQRT 34 (44)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred CCCeECCCCCcccCCHhHHHHHHHH
Confidence 3469999999888777777777643
No 147
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=45 Score=16.03 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=17.7
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|+|+.|+..+=...=.+.|..
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ytk_A 10 EKPYKCNECGKVFTQNSHLTNHWR 33 (46)
T ss_dssp SCSEECSSSCCEESSHHHHHHHHH
T ss_pred CCCEeCCcCCCccCCHHHHHHHHH
Confidence 346999999988877666666654
No 148
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=20.68 E-value=91 Score=18.83 Aligned_cols=26 Identities=27% Similarity=0.723 Sum_probs=20.9
Q ss_pred ccccccCCCCCe----eEeCCCCCcccccc
Q 047076 19 AAICQECKYKVS----KYKCPGCSIRTCSL 44 (86)
Q Consensus 19 ~~~C~vC~~~~~----kY~CP~C~~~~CSl 44 (86)
...|.+|+..-. +.-|..|+.-+|+-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~ 38 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNG 38 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETT
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChh
Confidence 457999997433 68999999999984
No 149
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.57 E-value=30 Score=19.13 Aligned_cols=8 Identities=50% Similarity=1.186 Sum_probs=3.9
Q ss_pred eEeCCCCC
Q 047076 31 KYKCPGCS 38 (86)
Q Consensus 31 kY~CP~C~ 38 (86)
+|+|+.|+
T Consensus 4 ~y~C~vCG 11 (46)
T 6rxn_A 4 KYVCNVCG 11 (46)
T ss_dssp CEEETTTC
T ss_pred EEECCCCC
Confidence 44555444
No 150
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.48 E-value=26 Score=17.04 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.6
Q ss_pred eeEeCCCCCccccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
..|.|+.|+..+=...=.+.|...
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~ 34 (46)
T 2enh_A 11 KPYECDVCRKAFSHHASLTQHQRV 34 (46)
T ss_dssp SSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred CCcCCCCcCchhCCHHHHHHHHHH
Confidence 468999999888877777777653
No 151
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.38 E-value=27 Score=17.01 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.7
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
...|+|+.|+..+-...=.+.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRKSGLHIHQQ 33 (46)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHH
T ss_pred CCCEECcccCCccCCHhHHHHHHH
Confidence 346999999998887777777754
No 152
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.30 E-value=82 Score=17.70 Aligned_cols=22 Identities=23% Similarity=0.736 Sum_probs=14.8
Q ss_pred ccccccCCCC------CeeEeCCCCCcc
Q 047076 19 AAICQECKYK------VSKYKCPGCSIR 40 (86)
Q Consensus 19 ~~~C~vC~~~------~~kY~CP~C~~~ 40 (86)
+.+|..|+.. ...|.|.+|+..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 5678778751 237788888765
No 153
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.23 E-value=46 Score=15.95 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=18.5
Q ss_pred CeeEeCCCCCcccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQ 52 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~ 52 (86)
.-.|+|+.|+..+=...=.+.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2ytf_A 10 EKPFECSECQKAFNTKSNLIVHQR 33 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHH
T ss_pred CCCcCCCCCCcccCCHHHHHHHHH
Confidence 346999999988877777777754
No 154
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.17 E-value=24 Score=16.75 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=18.6
Q ss_pred CeeEeCCCCCccccccccccccccc
Q 047076 29 VSKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 29 ~~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
...|.|+-|+..+-...=.+.|...
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~H~~~ 33 (42)
T 2eos_A 9 EKPYPCEICGTRFRHLQTLKSHLRI 33 (42)
T ss_dssp SCCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred CCCEECCCCCCccCCHHHHHHHHHh
Confidence 3468999999888777777777653
No 155
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=20.16 E-value=27 Score=16.98 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=17.9
Q ss_pred eeEeCCCCCccccccccccccccc
Q 047076 30 SKYKCPGCSIRTCSLACVKAHKQR 53 (86)
Q Consensus 30 ~kY~CP~C~~~~CSl~C~k~Hk~~ 53 (86)
..|+|+.|+..+=...=.+.|...
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNVHHKL 34 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred CCcccCccCcccCCHHHHHHHHHH
Confidence 468899888888777777777543
No 156
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.09 E-value=43 Score=18.77 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=6.4
Q ss_pred eEeCCCCCccc
Q 047076 31 KYKCPGCSIRT 41 (86)
Q Consensus 31 kY~CP~C~~~~ 41 (86)
+|+|+.|+--|
T Consensus 3 ~y~C~~CGyvY 13 (52)
T 1e8j_A 3 IYVCTVCGYEY 13 (52)
T ss_dssp CEECSSSCCCC
T ss_pred cEEeCCCCeEE
Confidence 56666666443
No 157
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.09 E-value=63 Score=20.39 Aligned_cols=23 Identities=22% Similarity=0.674 Sum_probs=16.3
Q ss_pred ccccccCCC----CCe------eEeCCCCCccc
Q 047076 19 AAICQECKY----KVS------KYKCPGCSIRT 41 (86)
Q Consensus 19 ~~~C~vC~~----~~~------kY~CP~C~~~~ 41 (86)
+.+|..|+. ... .|.|+.|+...
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 678888884 111 69999998644
Done!