BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047078
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 41 KLMKVLDLEDAPVDY------LPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLEILD 93
+LM V LE +D+ +P G+ N NL+++S+ N + +IPK IG L L IL
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 94 LK-NSLVRELPVEIRNLKKLRYL 115
L NS +P E+ + + L +L
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWL 540
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 55 YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLEILDL-KNSLVRELPVEIRNLKKL 112
Y+P+ +G++ L L++ + ++ IP +G+L GL ILDL N L +P + L L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 113 RYLMVYKYN 121
+ + N
Sbjct: 704 TEIDLSNNN 712
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 41 KLMKVLDLEDAPVDY------LPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLEILD 93
+LM V LE +D+ +P G+ N NL+++S+ N + +IPK IG L L IL
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 94 LK-NSLVRELPVEIRNLKKLRYL 115
L NS +P E+ + + L +L
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWL 543
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 55 YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLEILDL-KNSLVRELPVEIRNLKKL 112
Y+P+ +G++ L L++ + ++ IP +G+L GL ILDL N L +P + L L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 113 RYLMVYKYN 121
+ + N
Sbjct: 707 TEIDLSNNN 715
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 45 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPV 104
L+L P+ P+ L +L + ++ + ++P + GLE L L + +R LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 105 EIRNLKKLRYLMV 117
I +L +LR L +
Sbjct: 145 SIASLNRLRELSI 157
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSV 71
+ H + ++ + +LPD+ F ++ L L P+ LP + +L L LS+
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQ-----FAGLETLTLARNPLRALPASIASLNRLRELSI 157
Query: 72 KNT-NVKKIPKSIGN---------LLGLEILDLKNSLVRELPVEIRNLKKLRYLMV 117
+ + ++P+ + + L+ L+ L L+ + +R LP I NL+ L+ L +
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 43 MKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLK 95
++ L LE + LP + NL NL L ++N+ + + +I +L LE LDL+
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 19 SVFLFNVDKLPDSFMN--------ASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLS 70
S +F D L ++N A I N ++VLDL + LP +G+ F L Y
Sbjct: 240 SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299
Query: 71 VKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVY 118
+ V +P GNL L+ L ++ + + + ++I K + L+ Y
Sbjct: 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 4 IDDGALESIKHSKVRSVFLFN--VDKLPDSFMNASIANFKLMKVLDL-EDAPVDYLPEGV 60
I GA E + SK+R ++L N ++ +P N + LM+ LDL E ++Y+ EG
Sbjct: 138 IPSGAFEYL--SKLRELWLRNNPIESIPSYAFNRVPS---LMR-LDLGELKKLEYISEGA 191
Query: 61 -GNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVREL-PVEIRNLKKLRYLMV 117
LFNL YL++ N+K +P ++ L+GLE L++ + E+ P L L+ L V
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 28 LPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNL 86
+P S N NF + ++ P+ P + L LHYL + +TNV IP + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPI---PPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 87 LGLEILDLK-NSLVRELPVEIRNLKKL 112
L LD N+L LP I +L L
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNL 151
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ LE A ++ P
Sbjct: 66 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP- 121
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 122 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ +E A ++ P
Sbjct: 64 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP- 119
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 120 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ +E A ++ P
Sbjct: 64 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP- 119
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 120 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ +E A ++ P
Sbjct: 65 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP- 120
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 121 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ +E A ++ P
Sbjct: 66 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP- 121
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 122 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ +E A ++ P
Sbjct: 65 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP- 120
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 121 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ +E A ++ P
Sbjct: 64 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP- 119
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 120 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 0.93, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED--APVDYLPE 58
+++I+DGA +S+ H S + + + + A L K++ +E A ++ P
Sbjct: 88 IQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP- 143
Query: 59 GVGNLFNLHYLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVREL 102
+G+L L L+V + ++ K+P+ NL LE LDL ++ ++ +
Sbjct: 144 -IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 43 MKVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTNVKKIPKSI-GNLLGLEILDLKNSLVR 100
+K L L + + LP+GV L NL YL++ + ++ +PK + L L LDL + ++
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Query: 101 ELPVEI-RNLKKLRYLMVYK 119
LP + L +L+ L +Y+
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQ 190
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 57 PEGVGNLFNLHYLSVKNTNVKKIP 80
PE NL NL YL + NT +K +P
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLP 120
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 57 PEGVGNLFNLHYLSVKNTNVKKIP 80
PE NL NL YL + NT +K +P
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLP 120
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 15 SKVRSVFLFN--VDKLPDSFMNASIANFKLMKVLDL-EDAPVDYLPEGV-GNLFNLHYLS 70
SK+R ++L N ++ +P N + ++ LDL E ++Y+ E L NL YL+
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPS----LRRLDLGELKRLEYISEAAFEGLVNLRYLN 162
Query: 71 VKNTNVKKIPKSIGNLLGLEILDLKNS---LVRELPVEIRNLKKLRYLMV 117
+ N+K IP ++ L+ LE L+L + L+R P + L LR L +
Sbjct: 163 LGMCNLKDIP-NLTALVRLEELELSGNRLDLIR--PGSFQGLTSLRKLWL 209
>pdb|1PU6|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU6|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU7|A Chain A, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU7|B Chain B, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU8|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
pdb|1PU8|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
Length = 218
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 41 KLMKVLDL-EDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLV 99
K +K LDL ++AP + P + L + +NT + + KS+ N LKN+ +
Sbjct: 9 KALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLEN--------LKNAFI 60
Query: 100 RELPVEIRNLKKLRYL 115
E EI NLKK+ Y+
Sbjct: 61 LENDDEI-NLKKIAYI 75
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 15 SKVRSVFLFN--VDKLPDSFMNASIANFKLMKVLDL-EDAPVDYLPEGV-GNLFNLHYLS 70
SK+R ++L N ++ +P N ++ LDL E ++Y+ E L NL YL+
Sbjct: 107 SKLRELWLRNNPIESIPSYAFN----RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLN 162
Query: 71 VKNTNVKKIPKSIGNLLGLEILDLKNS---LVRELPVEIRNLKKLRYLMV 117
+ N+K IP ++ L+ LE L+L + L+R P + L LR L +
Sbjct: 163 LGMCNLKDIP-NLTALVRLEELELSGNRLDLIR--PGSFQGLTSLRKLWL 209
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 73 NTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYL-MVYKYNY 122
N N K I G + + KNS +L + RN+K +YL +Y Y Y
Sbjct: 117 NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY 167
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 1 MRSIDDGALESIKHSKVRSVFLFN--VDKLPDSFMNASIANFKLMKVLDL-EDAPVDYLP 57
+ +I +GA + SK++ ++L N ++ +P N ++ LDL E + Y+
Sbjct: 124 LTTIPNGAF--VYLSKLKELWLRNNPIESIPSYAFN----RIPSLRRLDLGELKRLSYIS 177
Query: 58 EGV-GNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLK-NSLVRELPVEIRNLKKLRYL 115
EG L NL YL++ N+++IP ++ L+ L+ LDL N L P + L L+ L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 116 MVYK 119
+ +
Sbjct: 237 WMIQ 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.144 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,331,845
Number of Sequences: 62578
Number of extensions: 204089
Number of successful extensions: 573
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 40
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)