Query 047078
Match_columns 192
No_of_seqs 133 out of 2329
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.6 6.2E-18 1.3E-22 120.0 -2.1 138 7-158 25-164 (264)
2 KOG0617 Ras suppressor protein 99.5 5.6E-16 1.2E-20 110.2 -2.1 137 8-158 49-187 (264)
3 PLN00113 leucine-rich repeat r 99.5 3.9E-14 8.4E-19 127.4 8.3 86 38-123 161-249 (968)
4 PLN00113 leucine-rich repeat r 99.5 7.1E-14 1.5E-18 125.7 8.5 112 11-124 160-274 (968)
5 PF14580 LRR_9: Leucine-rich r 99.3 1E-12 2.2E-17 95.2 4.7 136 7-153 11-149 (175)
6 KOG0444 Cytoskeletal regulator 99.3 5.4E-14 1.2E-18 117.1 -2.4 142 11-158 218-376 (1255)
7 KOG0472 Leucine-rich repeat pr 99.3 1.1E-13 2.4E-18 109.8 -1.2 120 30-160 424-544 (565)
8 KOG0444 Cytoskeletal regulator 99.3 3.7E-14 8.1E-19 118.1 -4.1 145 9-155 191-350 (1255)
9 KOG0472 Leucine-rich repeat pr 99.2 1.5E-12 3.2E-17 103.5 0.7 111 10-123 430-541 (565)
10 KOG4194 Membrane glycoprotein 99.2 8.5E-13 1.8E-17 109.1 -0.9 133 11-155 241-376 (873)
11 PF14580 LRR_9: Leucine-rich r 99.1 2.1E-11 4.6E-16 88.4 2.7 109 39-158 17-127 (175)
12 KOG1259 Nischarin, modulator o 99.1 6.8E-12 1.5E-16 96.6 -0.7 133 10-156 279-411 (490)
13 KOG0618 Serine/threonine phosp 99.1 1.1E-11 2.4E-16 106.9 0.3 113 5-121 373-487 (1081)
14 KOG4194 Membrane glycoprotein 99.1 3.6E-11 7.8E-16 99.6 2.8 107 14-122 172-281 (873)
15 PLN03150 hypothetical protein; 99.1 5.5E-10 1.2E-14 96.2 8.1 107 42-158 419-529 (623)
16 KOG0618 Serine/threonine phosp 99.0 1.5E-11 3.3E-16 106.0 -2.4 131 13-156 357-488 (1081)
17 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.5E-16 101.2 -3.0 106 43-160 145-250 (722)
18 KOG4658 Apoptotic ATPase [Sign 99.0 2.9E-10 6.2E-15 100.7 3.9 112 8-121 538-653 (889)
19 PLN03150 hypothetical protein; 99.0 1.3E-09 2.8E-14 93.9 7.7 106 16-123 419-528 (623)
20 PF13855 LRR_8: Leucine rich r 98.9 2.1E-09 4.6E-14 64.5 3.7 56 42-97 2-59 (61)
21 cd00116 LRR_RI Leucine-rich re 98.9 2.7E-09 5.8E-14 84.4 5.2 135 13-155 79-232 (319)
22 PRK15387 E3 ubiquitin-protein 98.9 5.6E-09 1.2E-13 91.2 6.9 135 14-159 301-460 (788)
23 PRK15370 E3 ubiquitin-protein 98.9 9.4E-09 2E-13 89.8 8.3 99 15-124 199-297 (754)
24 PRK15370 E3 ubiquitin-protein 98.8 9.8E-09 2.1E-13 89.7 8.1 101 15-124 262-381 (754)
25 PF13855 LRR_8: Leucine rich r 98.8 7.5E-09 1.6E-13 62.0 3.9 60 15-76 1-61 (61)
26 KOG4237 Extracellular matrix p 98.8 2.3E-10 5E-15 90.8 -3.8 128 16-155 68-199 (498)
27 KOG1259 Nischarin, modulator o 98.8 1.5E-09 3.3E-14 83.8 0.4 107 39-158 282-388 (490)
28 cd00116 LRR_RI Leucine-rich re 98.8 1.2E-08 2.6E-13 80.6 5.4 107 17-123 110-234 (319)
29 PRK15387 E3 ubiquitin-protein 98.7 1.5E-08 3.3E-13 88.5 5.4 101 16-124 343-459 (788)
30 KOG4658 Apoptotic ATPase [Sign 98.7 1E-08 2.2E-13 91.0 3.9 134 8-155 516-653 (889)
31 KOG1859 Leucine-rich repeat pr 98.7 2.7E-10 5.8E-15 96.6 -6.1 141 6-161 155-296 (1096)
32 PLN03210 Resistant to P. syrin 98.7 8.2E-08 1.8E-12 88.2 9.2 79 41-120 611-691 (1153)
33 KOG0532 Leucine-rich repeat (L 98.6 4E-09 8.7E-14 87.4 -0.5 109 12-124 140-248 (722)
34 PLN03210 Resistant to P. syrin 98.6 3.3E-07 7.2E-12 84.3 11.4 131 11-153 554-690 (1153)
35 KOG4579 Leucine-rich repeat (L 98.6 2.2E-09 4.7E-14 73.9 -2.9 113 8-123 20-136 (177)
36 KOG4237 Extracellular matrix p 98.6 2.3E-09 5E-14 85.3 -3.4 108 12-121 88-199 (498)
37 COG4886 Leucine-rich repeat (L 98.6 4.3E-08 9.3E-13 80.1 3.8 103 16-121 141-243 (394)
38 COG4886 Leucine-rich repeat (L 98.6 1.7E-08 3.7E-13 82.4 1.3 148 8-158 109-269 (394)
39 KOG3207 Beta-tubulin folding c 98.5 7.7E-09 1.7E-13 83.2 -1.4 142 11-156 142-313 (505)
40 PF12799 LRR_4: Leucine Rich r 98.5 1.8E-07 3.9E-12 52.1 3.0 37 66-102 3-39 (44)
41 PF12799 LRR_4: Leucine Rich r 98.4 2.1E-07 4.5E-12 51.9 3.2 37 88-124 2-38 (44)
42 KOG3207 Beta-tubulin folding c 98.4 6.7E-08 1.5E-12 77.9 -0.1 133 13-155 195-337 (505)
43 KOG1644 U2-associated snRNP A' 98.4 7E-07 1.5E-11 65.4 4.9 84 40-124 41-127 (233)
44 KOG4579 Leucine-rich repeat (L 98.4 1.8E-08 3.9E-13 69.5 -3.2 96 8-105 46-141 (177)
45 KOG0531 Protein phosphatase 1, 98.3 1.6E-07 3.5E-12 77.4 0.3 106 14-124 71-176 (414)
46 KOG3665 ZYG-1-like serine/thre 98.3 5.9E-07 1.3E-11 78.1 3.1 108 15-123 122-233 (699)
47 KOG0531 Protein phosphatase 1, 98.2 3.1E-07 6.7E-12 75.7 0.7 111 10-125 90-201 (414)
48 KOG1859 Leucine-rich repeat pr 98.2 9.5E-08 2.1E-12 81.5 -3.0 110 41-164 164-274 (1096)
49 KOG1644 U2-associated snRNP A' 98.2 3.6E-06 7.7E-11 61.8 4.9 101 16-120 43-150 (233)
50 KOG1909 Ran GTPase-activating 97.9 8.3E-06 1.8E-10 64.3 3.4 140 10-155 87-252 (382)
51 KOG3665 ZYG-1-like serine/thre 97.9 1.3E-05 2.9E-10 69.8 3.9 112 11-124 144-264 (699)
52 PRK15386 type III secretion pr 97.8 6.1E-05 1.3E-09 61.5 6.7 102 8-123 45-169 (426)
53 KOG1909 Ran GTPase-activating 97.7 2.6E-05 5.6E-10 61.6 3.1 138 13-156 155-310 (382)
54 KOG2982 Uncharacterized conser 97.5 3.8E-05 8.2E-10 59.8 1.5 89 12-100 68-159 (418)
55 KOG2739 Leucine-rich acidic nu 97.2 0.00022 4.7E-09 54.3 2.7 85 38-124 40-130 (260)
56 KOG2123 Uncharacterized conser 97.2 1.3E-05 2.9E-10 61.7 -3.9 102 10-116 14-123 (388)
57 KOG2982 Uncharacterized conser 97.2 0.0001 2.2E-09 57.5 0.3 85 39-123 69-159 (418)
58 PRK15386 type III secretion pr 97.0 0.0024 5.3E-08 52.4 6.3 81 39-130 50-132 (426)
59 PF00560 LRR_1: Leucine Rich R 96.6 0.00078 1.7E-08 31.4 0.5 17 89-105 2-18 (22)
60 KOG2739 Leucine-rich acidic nu 96.6 0.0012 2.5E-08 50.5 1.6 103 14-120 42-153 (260)
61 PF00560 LRR_1: Leucine Rich R 96.5 0.00088 1.9E-08 31.2 0.6 17 43-59 2-18 (22)
62 COG5238 RNA1 Ran GTPase-activa 96.4 0.014 3.1E-07 45.3 6.7 115 9-123 86-227 (388)
63 KOG0473 Leucine-rich repeat pr 96.4 4.8E-05 1E-09 57.3 -6.5 84 39-122 40-123 (326)
64 COG5238 RNA1 Ran GTPase-activa 96.3 0.024 5.3E-07 44.1 7.5 154 8-161 23-231 (388)
65 KOG2120 SCF ubiquitin ligase, 96.3 0.0016 3.4E-08 51.1 1.1 138 8-154 227-373 (419)
66 KOG0473 Leucine-rich repeat pr 96.2 6E-05 1.3E-09 56.8 -6.8 90 8-100 35-124 (326)
67 KOG2123 Uncharacterized conser 96.2 0.0003 6.6E-09 54.4 -3.4 106 39-151 17-124 (388)
68 PF13306 LRR_5: Leucine rich r 96.0 0.047 1E-06 37.0 7.1 101 12-119 9-112 (129)
69 PF13504 LRR_7: Leucine rich r 95.8 0.0064 1.4E-07 26.3 1.3 15 88-102 2-16 (17)
70 KOG2120 SCF ubiquitin ligase, 95.7 0.00046 1E-08 53.9 -4.2 133 12-155 207-349 (419)
71 smart00370 LRR Leucine-rich re 94.7 0.034 7.3E-07 26.7 2.2 20 87-106 2-21 (26)
72 smart00369 LRR_TYP Leucine-ric 94.7 0.034 7.3E-07 26.7 2.2 20 87-106 2-21 (26)
73 PF13306 LRR_5: Leucine rich r 94.7 0.13 2.8E-06 34.8 5.9 94 12-112 32-128 (129)
74 smart00370 LRR Leucine-rich re 94.4 0.036 7.9E-07 26.6 1.8 19 41-59 2-20 (26)
75 smart00369 LRR_TYP Leucine-ric 94.4 0.036 7.9E-07 26.6 1.8 19 41-59 2-20 (26)
76 smart00364 LRR_BAC Leucine-ric 88.3 0.32 7E-06 23.5 1.2 17 88-104 3-19 (26)
77 KOG3864 Uncharacterized conser 85.7 0.1 2.2E-06 38.8 -2.0 77 43-119 103-185 (221)
78 smart00365 LRR_SD22 Leucine-ri 85.7 0.71 1.5E-05 22.3 1.7 15 41-55 2-16 (26)
79 PF13516 LRR_6: Leucine Rich r 81.1 0.35 7.6E-06 22.5 -0.5 11 111-121 3-13 (24)
80 KOG1947 Leucine rich repeat pr 81.0 0.73 1.6E-05 38.3 1.0 109 14-122 187-307 (482)
81 KOG3864 Uncharacterized conser 80.9 0.24 5.3E-06 36.8 -1.6 79 16-96 102-185 (221)
82 smart00368 LRR_RI Leucine rich 74.2 2.9 6.4E-05 20.3 1.7 14 41-54 2-15 (28)
83 KOG1947 Leucine rich repeat pr 71.5 1.5 3.2E-05 36.5 0.3 112 8-119 207-330 (482)
84 KOG3763 mRNA export factor TAP 62.8 5.7 0.00012 34.1 2.1 61 64-125 218-285 (585)
85 KOG4341 F-box protein containi 62.0 3.5 7.5E-05 34.3 0.7 112 11-122 316-438 (483)
86 KOG4341 F-box protein containi 61.9 6.9 0.00015 32.6 2.4 113 12-124 291-415 (483)
87 KOG3763 mRNA export factor TAP 49.7 12 0.00026 32.2 2.0 39 13-51 216-254 (585)
88 TIGR00864 PCC polycystin catio 39.5 22 0.00047 36.7 2.3 31 70-100 1-32 (2740)
89 smart00367 LRR_CC Leucine-rich 39.1 20 0.00044 16.7 1.1 13 109-121 1-13 (26)
90 TIGR00864 PCC polycystin catio 30.1 41 0.00089 34.9 2.5 31 22-54 2-32 (2740)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=6.2e-18 Score=120.05 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=112.1
Q ss_pred hhhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCC
Q 047078 7 GALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNL 86 (192)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l 86 (192)
+++....++++..|.+++|++ ...+.. +..+.+|++|++.+|+++++|.++.++++|+.|+++-|++..+|.+|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl--~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKL--TVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCce--eecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 456667778888899999997 444443 47889999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEccCCCCc--cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 87 LGLEILDLKNSLVR--ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 87 ~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
+.|+.||+..|++. .+|..++.++.|+.|+++.|.|. .+|..++.+++||.+.+..|....
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-----------~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-----------ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-----------cCChhhhhhcceeEEeeccCchhh
Confidence 99999999998876 88888888888888888888775 244556777777777776666443
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=5.6e-16 Score=110.16 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=114.9
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCc--ccCcccCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVK--KIPKSIGN 85 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~--~lp~~~~~ 85 (192)
.|.+.++.+|+.|++.+|.+ ...+.. ++.+++|+.|++..|++..+|..|+.++-|+.||+..|++. .+|..|.-
T Consensus 49 ppnia~l~nlevln~~nnqi--e~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQI--EELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred CCcHHHhhhhhhhhcccchh--hhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhH
Confidence 35567889999999999997 555443 47789999999999999999999999999999999999987 78888888
Q ss_pred CCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 86 LLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 86 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
+.-|+.|.+++|.++-+|++++++++|+.|.+..|.+-+ +|+.++.+..|+++.+.+|...-
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-----------lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-----------LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-----------CcHHHHHHHHHHHHhcccceeee
Confidence 888999999999999999999999999999999887652 45667777888888777776443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=3.9e-14 Score=127.37 Aligned_cols=86 Identities=29% Similarity=0.475 Sum_probs=43.7
Q ss_pred cCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCCCCCEEEccCCCCc-cCChhhcCCCCCcE
Q 047078 38 ANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLEILDLKNSLVR-ELPVEIRNLKKLRY 114 (192)
Q Consensus 38 ~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~ 114 (192)
+.+++|++|++++|.+. .+|..++.+++|++|++++|++. .+|..++.+++|+.|++++|.+. .+|..++++++|++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 34455555555555444 44444555555555555555544 44445555555555555555544 44555555555555
Q ss_pred EEccccccC
Q 047078 115 LMVYKYNYT 123 (192)
Q Consensus 115 L~l~~n~~~ 123 (192)
|++++|.+.
T Consensus 241 L~L~~n~l~ 249 (968)
T PLN00113 241 LDLVYNNLT 249 (968)
T ss_pred EECcCceec
Confidence 555555443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.49 E-value=7.1e-14 Score=125.67 Aligned_cols=112 Identities=24% Similarity=0.384 Sum_probs=90.0
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~ 88 (192)
+..+++|+.|++++|.+ .......+..+++|++|++++|.+. .+|..++.+.+|++|++++|++. .+|..++.+++
T Consensus 160 ~~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVL--VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred HhcCCCCCEEECccCcc--cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 56778888888888876 3334445567888888999888877 67788888888888888888887 78888888888
Q ss_pred CCEEEccCCCCc-cCChhhcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVR-ELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++ .+|..++++++|+.|++++|.+.+
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 888888888876 778888888888888888887754
No 5
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=1e-12 Score=95.21 Aligned_cols=136 Identities=21% Similarity=0.203 Sum_probs=55.4
Q ss_pred hhhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCccc-CC
Q 047078 7 GALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSI-GN 85 (192)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~-~~ 85 (192)
..+...+..++++|++.+|.+ ..+ ...-..+.+|+.|++++|.|+.++ .+..+++|++|++++|+++.+++.+ ..
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I--~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQI--STI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred ccccccccccccccccccccc--ccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 344555666799999999998 333 332235789999999999999884 5788999999999999999887655 36
Q ss_pred CCCCCEEEccCCCCccCC--hhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCC
Q 047078 86 LLGLEILDLKNSLVRELP--VEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPA 153 (192)
Q Consensus 86 l~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 153 (192)
+++|+.|.+++|.+..+- ..+..+++|+.|++.+|+++.. +. --.-.+..+|+|+.|+-..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~---~~----YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK---KN----YRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS---TT----HHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch---hh----HHHHHHHHcChhheeCCEE
Confidence 899999999999987543 3577899999999999998742 21 1224467889998886533
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=5.4e-14 Score=117.12 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=85.1
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLE 90 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~ 90 (192)
+.++.+|+.++++.|.+ .+.+...-.+++|+.|++|+|.|+++....+...+|++|+++.|+++.+|..++++++|+
T Consensus 218 ld~l~NL~dvDlS~N~L---p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNL---PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhhhhhhccccccCC---CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHH
Confidence 45566666666666664 222333345666666666666666555555556666666666666666666666666666
Q ss_pred EEEccCCCCc--cCChhhcCCCCCcEEEccccccCCCccCChhHH---------------HhhHHHhhcccccceeecCC
Q 047078 91 ILDLKNSLVR--ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAA---------------AKLHEFIDVFVEFHDFLDPA 153 (192)
Q Consensus 91 ~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~---------------~~~~~~~~~l~~L~~l~~~~ 153 (192)
.|.+.+|.++ .+|.+|+++..|..+...+|.+.- +|...+ ..+|+.|+-++.|..|++..
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl---VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL---VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhcccccc---CchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccC
Confidence 6666666543 566666666666666655554431 111111 12678888889999998888
Q ss_pred CCCCC
Q 047078 154 NGKFG 158 (192)
Q Consensus 154 ~~~~~ 158 (192)
|+..-
T Consensus 372 NpnLV 376 (1255)
T KOG0444|consen 372 NPNLV 376 (1255)
T ss_pred CcCcc
Confidence 77443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=1.1e-13 Score=109.77 Aligned_cols=120 Identities=19% Similarity=0.316 Sum_probs=103.3
Q ss_pred CccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChh-hcC
Q 047078 30 DSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVE-IRN 108 (192)
Q Consensus 30 ~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~-l~~ 108 (192)
.+|++.+.+.+++|..|++++|.+..+|..++.+..|+.++++.|+|..+|..+..+.-++.+-.++|++++++++ +.+
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 4777777888999999999999999999999999999999999999999998888888888887888899877775 889
Q ss_pred CCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 109 LKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 109 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
|.+|..||+.+|.+.. +|.++++|++|+++.+.+|++..+.
T Consensus 504 m~nL~tLDL~nNdlq~-----------IPp~LgnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQ-----------IPPILGNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred hhhcceeccCCCchhh-----------CChhhccccceeEEEecCCccCCCH
Confidence 9999999999988773 5577899999999999999877444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.33 E-value=3.7e-14 Score=118.08 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=120.9
Q ss_pred hhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCC
Q 047078 9 LESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLG 88 (192)
Q Consensus 9 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~ 88 (192)
.++..+++|++|.+++.......++. .+..+.+|+.+++|.|.++.+|+.+..+++|+.|++++|.++++.-..+...+
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWEN 269 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhh
Confidence 34455666777777777652233333 33588999999999999999999999999999999999999988888888999
Q ss_pred CCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHh---------------hHHHhhcccccceeecCC
Q 047078 89 LEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAK---------------LHEFIDVFVEFHDFLDPA 153 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---------------~~~~~~~l~~L~~l~~~~ 153 (192)
|++|+++.|+++.+|..++++++|+.|++.+|.+... .+|+.+|.. .|+++.++..|+.|.++.
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe-GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE-GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccCccccc-CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc
Confidence 9999999999999999999999999999999987643 677766554 588999999999998888
Q ss_pred CC
Q 047078 154 NG 155 (192)
Q Consensus 154 ~~ 155 (192)
|.
T Consensus 349 Nr 350 (1255)
T KOG0444|consen 349 NR 350 (1255)
T ss_pred cc
Confidence 76
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.24 E-value=1.5e-12 Score=103.46 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=100.3
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcc-cCCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLG 88 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~ 88 (192)
.+..+++|..|++++|.+ .+++.+. ..+..|+.|+++.|++..+|..++.+..++++-.++|++..++++ +..+.+
T Consensus 430 ~l~~l~kLt~L~L~NN~L--n~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLL--NDLPEEM-GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHhhhcceeeecccchh--hhcchhh-hhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 356788999999999997 7777665 456779999999999999999999999999999999999977765 999999
Q ss_pred CCEEEccCCCCccCChhhcCCCCCcEEEccccccC
Q 047078 89 LEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~ 123 (192)
|..|++.+|.+..+|+.+++|++|++|++.+|+|+
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999999999999999999999999999997
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.24 E-value=8.5e-13 Score=109.07 Aligned_cols=133 Identities=16% Similarity=0.094 Sum_probs=85.4
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCc-ccCcccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~ 88 (192)
..++++|+.|.+..|.+ ..+....|.++.++++|+++.|++..+. .++.+++.|+.|+++.|.|. .-++++..+++
T Consensus 241 FqgL~Sl~nlklqrN~I--~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDI--SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hcCchhhhhhhhhhcCc--ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 34566666666666666 5566666666777777777777777544 44667777777777777776 34456666777
Q ss_pred CCEEEccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 89 LEILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
|++|+|+.|.+++++++ +..+..|+.|.+++|++..+ ....+.++.+|++|++..|.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l----------~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL----------AEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHH----------HhhHHHHhhhhhhhcCcCCe
Confidence 77777777777766653 45566666666666665431 22334556666666666655
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.1e-11 Score=88.37 Aligned_cols=109 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred CCCccCEEEccCCCCCcCCcccC-CCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhc-CCCCCcEEE
Q 047078 39 NFKLMKVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIR-NLKKLRYLM 116 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~~lp~~~~-~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~-~l~~L~~L~ 116 (192)
+...++.|++.+|.|+.+. .++ .+.+|+.|++++|.++.++ .+..++.|+.|++++|.++++++++. .+++|+.|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 5567899999999999774 565 6889999999999999874 67889999999999999999877664 689999999
Q ss_pred ccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 117 VYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 117 l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
+++|++....++ ..+..++.|+.|.+.+|+...
T Consensus 95 L~~N~I~~l~~l---------~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 95 LSNNKISDLNEL---------EPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TTS---SCCCC---------GGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCcCCChHHh---------HHHHcCCCcceeeccCCcccc
Confidence 999999865433 234678999999999888543
No 12
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=6.8e-12 Score=96.63 Aligned_cols=133 Identities=13% Similarity=0.057 Sum_probs=107.8
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGL 89 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L 89 (192)
....|..|+++++++|.+ .-......-++.+++|+++.|.+..+. ++..+.+|+.||+++|.++.+..+-.++-+.
T Consensus 279 ~~dTWq~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccch---hhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 345677899999999997 344555567899999999999998774 4889999999999999999887777788889
Q ss_pred CEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 90 EILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
+.|.+++|.+..+ .+++++.+|..||+++|++... .....|++++.|+++.+..|+.
T Consensus 355 KtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~l---------deV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 355 KTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEEL---------DEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeeehhhhhHhhh-hhhHhhhhheeccccccchhhH---------HHhcccccccHHHHHhhcCCCc
Confidence 9999999988877 4788899999999999988643 2335678888888888877763
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-11 Score=106.86 Aligned_cols=113 Identities=22% Similarity=0.338 Sum_probs=98.2
Q ss_pred cchhhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccC
Q 047078 5 DDGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIG 84 (192)
Q Consensus 5 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~ 84 (192)
+.-+|.+-.+++|+.|.+++|.+ ..++...+.++..|+.|++|+|+++.+|..+..+..|++|..-+|++..+| .+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA 449 (1081)
T ss_pred ccchhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhh
Confidence 34478888999999999999998 889998888999999999999999999999999999999999999999888 888
Q ss_pred CCCCCCEEEccCCCCc--cCChhhcCCCCCcEEEccccc
Q 047078 85 NLLGLEILDLKNSLVR--ELPVEIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 85 ~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~ 121 (192)
+++.|+.+|++.|+++ .+|... ..++|++||+++|.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 9999999999999987 444332 33899999999985
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.11 E-value=3.6e-11 Score=99.65 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=68.6
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCccc-CcccCCCCCCCE
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLEI 91 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~~ 91 (192)
-.+++.|++++|.| ..+....|..+.+|.+|.++.|.++.+|.- |..+++|+.|++..|++... -..|..+++|+.
T Consensus 172 ~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 172 KVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCceEEeeccccc--cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 35678888888887 777777777888888888888888888744 55588888888888877633 224455555555
Q ss_pred EEccCCCCccCChh-hcCCCCCcEEEcccccc
Q 047078 92 LDLKNSLVRELPVE-IRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 92 L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~ 122 (192)
+.+..|.+..+..+ ++.+.++++|++..|++
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchh
Confidence 55555555444332 23444444444444443
No 15
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=5.5e-10 Score=96.22 Aligned_cols=107 Identities=20% Similarity=0.402 Sum_probs=83.5
Q ss_pred ccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCCCCCEEEccCCCCc-cCChhhcCCCCCcEEEcc
Q 047078 42 LMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLEILDLKNSLVR-ELPVEIRNLKKLRYLMVY 118 (192)
Q Consensus 42 ~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~ 118 (192)
.++.|++++|.+. .+|..++.+++|+.|++++|+++ .+|+.++.+++|+.|++++|.++ .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778889999888 78888889999999999999988 88888899999999999999988 888888999999999999
Q ss_pred ccccCCCccCChhHHHhhHHHhhc-ccccceeecCCCCCCC
Q 047078 119 KYNYTAGATLAGEAAAKLHEFIDV-FVEFHDFLDPANGKFG 158 (192)
Q Consensus 119 ~n~~~~~~~~~~~~~~~~~~~~~~-l~~L~~l~~~~~~~~~ 158 (192)
+|.+.+ .+|... .. ..++..+.+..|...+
T Consensus 499 ~N~l~g--~iP~~l--------~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSG--RVPAAL--------GGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccc--cCChHH--------hhccccCceEEecCCcccc
Confidence 998876 444332 22 2344556666555433
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-11 Score=106.03 Aligned_cols=131 Identities=22% Similarity=0.317 Sum_probs=108.4
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcccCCCCCCCE
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEI 91 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~ 91 (192)
.++.|+.|++.+|.+ .+-.-..+.++++|++|++++|++..+|.. +.++..|+.|++++|.++.+|..+..+..|++
T Consensus 357 ~~~~Lq~LylanN~L--td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 357 NHAALQELYLANNHL--TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hhHHHHHHHHhcCcc--cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 356688899999998 333333446899999999999999999855 78899999999999999999999999999999
Q ss_pred EEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 92 LDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 92 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
|...+|++..+| ++.+++.|+.+|++.|+++.. .++. ..| -++|++|++.+|..
T Consensus 435 L~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~-~l~~----~~p-----~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEV-TLPE----ALP-----SPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCCceeech-hhhhcCcceEEecccchhhhh-hhhh----hCC-----CcccceeeccCCcc
Confidence 999999999999 889999999999999988753 1221 111 17888888888763
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.6e-11 Score=101.18 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=63.4
Q ss_pred cCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEcccccc
Q 047078 43 MKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 43 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
|++|.+++|+++.+|+.++.+.+|..||.+.|.+..+|+.++.+.+|+.+.++.|.+..+|+++.. -.|..||++.|++
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNki 223 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKI 223 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCce
Confidence 444555555555555555544555555555555555555555555555555555555555555542 2355566666655
Q ss_pred CCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 123 TAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
. .+|-.+.+|+.|++|.+..|+...+.
T Consensus 224 s-----------~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 224 S-----------YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred e-----------ecchhhhhhhhheeeeeccCCCCCCh
Confidence 4 26778899999999999999876654
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=2.9e-10 Score=100.67 Aligned_cols=112 Identities=26% Similarity=0.425 Sum_probs=94.9
Q ss_pred hhhhhCCCcccEEEEeccC--CCCCccchhhhcCCCccCEEEccCC-CCCcCCcccCCCCCccEEEeecCCCcccCcccC
Q 047078 8 ALESIKHSKVRSVFLFNVD--KLPDSFMNASIANFKLMKVLDLEDA-PVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIG 84 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~ 84 (192)
++....+++|++|.+.+|. + ......+|..++.|++||+++| .+..+|..++.+.+|++|+++++.++.+|.+++
T Consensus 538 ~~~~~~~~~L~tLll~~n~~~l--~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~ 615 (889)
T KOG4658|consen 538 IAGSSENPKLRTLLLQRNSDWL--LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG 615 (889)
T ss_pred ccCCCCCCccceEEEeecchhh--hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH
Confidence 4455677789999999996 4 6677777889999999999988 567999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCCC-ccCChhhcCCCCCcEEEccccc
Q 047078 85 NLLGLEILDLKNSLV-RELPVEIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 85 ~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~ 121 (192)
++..|++|++..+.- ..+|.....+++|++|.+..-.
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999988764 4555556679999999987654
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.3e-09 Score=93.93 Aligned_cols=106 Identities=18% Similarity=0.327 Sum_probs=91.4
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCCCCCEEE
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLEILD 93 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~L~~L~ 93 (192)
.++.|++.+|.+ .......+..+++|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|..++.+++|+.|+
T Consensus 419 ~v~~L~L~~n~L--~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGL--RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCc--cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 377889999887 4344445678999999999999998 89989999999999999999998 8999999999999999
Q ss_pred ccCCCCc-cCChhhcCC-CCCcEEEccccccC
Q 047078 94 LKNSLVR-ELPVEIRNL-KKLRYLMVYKYNYT 123 (192)
Q Consensus 94 l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~~~ 123 (192)
+++|.++ .+|..++.+ .++..+++.+|...
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccc
Confidence 9999998 999988764 46778888888643
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=2.1e-09 Score=64.48 Aligned_cols=56 Identities=36% Similarity=0.545 Sum_probs=23.9
Q ss_pred ccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEEEccCC
Q 047078 42 LMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEILDLKNS 97 (192)
Q Consensus 42 ~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L~l~~n 97 (192)
+|++|++++|+++.+|+ .+..+++|++|++++|.++.+++ .|..+++|+.+++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444444432 23444444444444444443332 3344444444444444
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=2.7e-09 Score=84.38 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=58.5
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCC---CccCEEEccCCCCC-----cCCcccCCC-CCccEEEeecCCCc-----c
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANF---KLMKVLDLEDAPVD-----YLPEGVGNL-FNLHYLSVKNTNVK-----K 78 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l---~~L~~L~l~~n~i~-----~lp~~~~~l-~~L~~L~l~~n~~~-----~ 78 (192)
.+++|+.|++.+|.+ .......+..+ ++|+.|++++|.+. .+...+..+ ++|+.+++++|.++ .
T Consensus 79 ~~~~L~~L~l~~~~~--~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 79 KGCGLQELDLSDNAL--GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred hcCceeEEEccCCCC--ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344555555555554 21122222222 22555555555544 111223333 45555555555544 1
Q ss_pred cCcccCCCCCCCEEEccCCCCc-----cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCC
Q 047078 79 IPKSIGNLLGLEILDLKNSLVR-----ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPA 153 (192)
Q Consensus 79 lp~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 153 (192)
++..+..+.+|+.|++++|.++ .++..+...++|++|++++|.+... ....+...+..+++|+.|.++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~------~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE------GASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH------HHHHHHHHhcccCCCCEEecCC
Confidence 2223344445555555555544 1222233344555555555544321 1112233344455555555555
Q ss_pred CC
Q 047078 154 NG 155 (192)
Q Consensus 154 ~~ 155 (192)
+.
T Consensus 231 n~ 232 (319)
T cd00116 231 NN 232 (319)
T ss_pred Cc
Confidence 43
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=5.6e-09 Score=91.17 Aligned_cols=135 Identities=18% Similarity=0.091 Sum_probs=83.3
Q ss_pred CCcccEEEEeccCCCCCccch----------------hhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCc
Q 047078 14 HSKVRSVFLFNVDKLPDSFMN----------------ASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVK 77 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~----------------~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~ 77 (192)
.++|+.|++++|.+ ..++. .++....+|+.|++++|+++.+|... .+|+.|++++|+++
T Consensus 301 p~~L~~LdLS~N~L--~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 301 PPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLT 375 (788)
T ss_pred ccccceeECCCCcc--ccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCC---cccceehhhccccc
Confidence 36777777777777 33221 01111246788888888887776432 34566667777766
Q ss_pred ccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChh---------HHHhhHHHhhcccccce
Q 047078 78 KIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGE---------AAAKLHEFIDVFVEFHD 148 (192)
Q Consensus 78 ~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~---------~~~~~~~~~~~l~~L~~ 148 (192)
.+|... .+|+.|++++|.++.+|.. .++|+.|++++|.+.++...+.. .-..+|..+..++.|+.
T Consensus 376 ~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 376 SLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETT 449 (788)
T ss_pred cCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHhhccCCCe
Confidence 665432 4577777777777776653 24677777777776643222110 01125677788889999
Q ss_pred eecCCCCCCCC
Q 047078 149 FLDPANGKFGP 159 (192)
Q Consensus 149 l~~~~~~~~~~ 159 (192)
+++..|.....
T Consensus 450 LdLs~N~Ls~~ 460 (788)
T PRK15387 450 VNLEGNPLSER 460 (788)
T ss_pred EECCCCCCCch
Confidence 99988886643
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.85 E-value=9.4e-09 Score=89.84 Aligned_cols=99 Identities=19% Similarity=0.319 Sum_probs=74.7
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEc
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDL 94 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l 94 (192)
++++.|++.+|.+ ..++... .++|+.|++++|.++.+|..+. .+|+.|++++|++..+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~L--tsLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNEL--KSLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCC--CcCChhh---ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 4688888888887 5555443 2578888888888887776543 468888888888888877664 47888888
Q ss_pred cCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 95 KNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 95 ~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
++|+++.+|..+. ++|+.|++++|++..
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCcccc
Confidence 8888888887653 478888888888764
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.84 E-value=9.8e-09 Score=89.74 Aligned_cols=101 Identities=20% Similarity=0.266 Sum_probs=61.3
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccC-------------------CCCCccEEEeecCC
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVG-------------------NLFNLHYLSVKNTN 75 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~-------------------~l~~L~~L~l~~n~ 75 (192)
++|+.|++++|.+ ..++..++ ++|+.|++++|.++.+|..+. -.++|++|++++|.
T Consensus 262 s~L~~L~Ls~N~L--~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 262 SALQSLDLFHNKI--SCLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA 336 (754)
T ss_pred CCCCEEECcCCcc--CccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence 3567777777765 33333222 356666666666665543221 11346666666666
Q ss_pred CcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 76 VKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 76 ~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
++.+|..+. ++|+.|++++|+++.+|..+. ++|+.|++++|.+..
T Consensus 337 Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 337 LTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTN 381 (754)
T ss_pred cccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCC
Confidence 665655442 577778887777777776552 577788888877663
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=7.5e-09 Score=62.05 Aligned_cols=60 Identities=28% Similarity=0.427 Sum_probs=54.7
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCC
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNV 76 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~ 76 (192)
++|++|++.+|.+ ..++...+.++++|++|++++|.++.++ ..+..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999998 8888889999999999999999999776 5689999999999999974
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.78 E-value=2.3e-10 Score=90.83 Aligned_cols=128 Identities=17% Similarity=0.254 Sum_probs=102.0
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeec-CCCcccCc-ccCCCCCCCEE
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKN-TNVKKIPK-SIGNLLGLEIL 92 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~-n~~~~lp~-~~~~l~~L~~L 92 (192)
...++.+..|.| ..++..+|+.+++|++|+++.|.|+.+ |..|.+++.+..|-+.+ |+|+++|+ .|+.+..++.|
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 356788999998 899999999999999999999999954 67789999988887666 78999988 57889999999
Q ss_pred EccCCCCc-cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 93 DLKNSLVR-ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 93 ~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
.+..|.+. .....+..+++|..|.+..|.+..+ ....+..+.+++++.+..|.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i----------~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI----------CKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhh----------ccccccchhccchHhhhcCc
Confidence 99998888 4444577899999999888877642 11245566677777766666
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.5e-09 Score=83.83 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=84.8
Q ss_pred CCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEcc
Q 047078 39 NFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVY 118 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~ 118 (192)
.+..|+.+++++|.|+.+.++..-.+.++.|+++.|++..+. ++..+++|+.||+++|.++++..+=-++.+.+.|.++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 456788899999999888888888888999999999888553 4777888999999999888776655577788888888
Q ss_pred ccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 119 KYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 119 ~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
+|.+... .+++.+-+|..|++.+|....
T Consensus 361 ~N~iE~L------------SGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 361 QNKIETL------------SGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhhHhhh------------hhhHhhhhheeccccccchhh
Confidence 8876542 456778888889888887443
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=1.2e-08 Score=80.62 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=49.4
Q ss_pred ccEEEEeccCCCCC--ccchhhhcCC-CccCEEEccCCCCC-----cCCcccCCCCCccEEEeecCCCc-----ccCccc
Q 047078 17 VRSVFLFNVDKLPD--SFMNASIANF-KLMKVLDLEDAPVD-----YLPEGVGNLFNLHYLSVKNTNVK-----KIPKSI 83 (192)
Q Consensus 17 L~~L~l~~n~~~~~--~~~~~~~~~l-~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~-----~lp~~~ 83 (192)
|+.|++++|.+... ......+..+ ++|+.|++++|.++ .++..+..+.+|+.|++++|.++ .++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 66666666654100 0111122233 55566666666555 12223344455556666555554 122233
Q ss_pred CCCCCCCEEEccCCCCc-----cCChhhcCCCCCcEEEccccccC
Q 047078 84 GNLLGLEILDLKNSLVR-----ELPVEIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 84 ~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~~~ 123 (192)
..+++|+.|++++|.++ .++..+..+++|++|++++|.+.
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 34445555555555543 12222334555555555555443
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=1.5e-08 Score=88.49 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=72.5
Q ss_pred cccEEEEeccCCCCCccch----------------hhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCccc
Q 047078 16 KVRSVFLFNVDKLPDSFMN----------------ASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKI 79 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~----------------~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~l 79 (192)
+|+.|++++|.+ ..++. .++....+|+.|++++|.++.+|.. ..+|+.|++++|+++.+
T Consensus 343 ~Lq~LdLS~N~L--s~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 343 GLQELSVSDNQL--ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSL 417 (788)
T ss_pred ccceEecCCCcc--CCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCC
Confidence 678888888876 33221 1111224566677777776666543 24677778888887777
Q ss_pred CcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 80 PKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 80 p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
|... .+|+.|++++|+++.+|..++++++|+.+++++|++++
T Consensus 418 P~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 418 PMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred Ccch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 6543 45788899999999999999999999999999999875
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1e-08 Score=91.01 Aligned_cols=134 Identities=22% Similarity=0.279 Sum_probs=106.2
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCC--CCcCCcc-cCCCCCccEEEeecCC-CcccCccc
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP--VDYLPEG-VGNLFNLHYLSVKNTN-VKKIPKSI 83 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~--i~~lp~~-~~~l~~L~~L~l~~n~-~~~lp~~~ 83 (192)
.++...+...|...+.+|.+ ..+.+. ...+.|++|-+..|. +..++.. |..++.|+.||+++|. +..+|..+
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~--~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKI--EHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cccccchhheeEEEEeccch--hhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 56667778888998888886 333332 244589999999996 5666654 7789999999999987 66999999
Q ss_pred CCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 84 GNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
+.+-+|+.|++++..++.+|.+++++.+|.+|++..+..... .+.....+++|+++.+....
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~----------~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES----------IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc----------ccchhhhcccccEEEeeccc
Confidence 999999999999999999999999999999999998754321 14555668888888775554
No 31
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=2.7e-10 Score=96.62 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=111.7
Q ss_pred chhhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCc-ccC
Q 047078 6 DGALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPK-SIG 84 (192)
Q Consensus 6 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~-~~~ 84 (192)
+++.....|-.|.+.+++.|.+ ..+.....-+++|+.|+++.|+++.+. .+..+++|++||++.|.+..+|. +..
T Consensus 155 gd~~ns~~Wn~L~~a~fsyN~L---~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~ 230 (1096)
T KOG1859|consen 155 GDISNSPVWNKLATASFSYNRL---VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMV 230 (1096)
T ss_pred cccccchhhhhHhhhhcchhhH---HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchh
Confidence 4455555677788888888886 666777778899999999999998663 78889999999999999998876 444
Q ss_pred CCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCcc
Q 047078 85 NLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPGC 161 (192)
Q Consensus 85 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 161 (192)
.+. |+.|.+++|.++++- ++.++.+|+.||+++|-+.+..++. -++.+..|..|++.+|+..+...
T Consensus 231 gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~---------pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 231 GCK-LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELE---------PLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhh-heeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhh---------HHHHHHHHHHHhhcCCccccCHH
Confidence 554 999999999998774 7889999999999999877643332 24677888889999988766543
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.69 E-value=8.2e-08 Score=88.23 Aligned_cols=79 Identities=27% Similarity=0.427 Sum_probs=44.2
Q ss_pred CccCEEEccCCCCCcCCcccCCCCCccEEEeecCC-CcccCcccCCCCCCCEEEccCCC-CccCChhhcCCCCCcEEEcc
Q 047078 41 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTN-VKKIPKSIGNLLGLEILDLKNSL-VRELPVEIRNLKKLRYLMVY 118 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~-~~~lp~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~ 118 (192)
.+|+.|++.+|.+..+|..+..+++|+.++++++. +..+| .++.+++|+.|++++|. +..+|..++++++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 45555555555555555555555666666665544 33443 34555566666665553 44566666666666666666
Q ss_pred cc
Q 047078 119 KY 120 (192)
Q Consensus 119 ~n 120 (192)
+|
T Consensus 690 ~c 691 (1153)
T PLN03210 690 RC 691 (1153)
T ss_pred CC
Confidence 55
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=4e-09 Score=87.36 Aligned_cols=109 Identities=20% Similarity=0.343 Sum_probs=95.3
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCE
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEI 91 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~ 91 (192)
...=-|+.|.+++|++ ..++..+ +.+.+|..|+.+.|.+..+|..++.+..|+.|.+..|.+..+|+..+.++ |..
T Consensus 140 lC~lpLkvli~sNNkl--~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~ 215 (722)
T KOG0532|consen 140 LCDLPLKVLIVSNNKL--TSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIR 215 (722)
T ss_pred hhcCcceeEEEecCcc--ccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eee
Confidence 3344478899999987 5565555 47889999999999999999999999999999999999999999988555 899
Q ss_pred EEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 92 LDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 92 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
||++.|++..+|-+|.+|..|++|-+.+|.+.+
T Consensus 216 lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 216 LDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 999999999999999999999999999998874
No 34
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.63 E-value=3.3e-07 Score=84.28 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=97.3
Q ss_pred hhCCCcccEEEEeccCCCC-----CccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCC
Q 047078 11 SIKHSKVRSVFLFNVDKLP-----DSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGN 85 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~ 85 (192)
..++++|+.|.+..+.... ..+++.+..-..+|+.|.+.++.+..+|..+ ...+|+.|++.++.+..++..+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 4678899999987764310 1122322222356999999999999999876 578999999999999999999999
Q ss_pred CCCCCEEEccCCC-CccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCC
Q 047078 86 LLGLEILDLKNSL-VRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPA 153 (192)
Q Consensus 86 l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 153 (192)
+++|+.++++++. ++.+| .+..+++|+.|++++|.... ++| ..+.++++|+.|.+..
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~--~lp--------~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV--ELP--------SSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc--ccc--------hhhhccCCCCEEeCCC
Confidence 9999999999875 66787 58889999999999985432 233 3445566666665554
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.59 E-value=2.2e-09 Score=73.94 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=81.1
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhc---CCCccCEEEccCCCCCcCCcccCC-CCCccEEEeecCCCcccCccc
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIA---NFKLMKVLDLEDAPVDYLPEGVGN-LFNLHYLSVKNTNVKKIPKSI 83 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~l~~L~~L~l~~n~i~~lp~~~~~-l~~L~~L~l~~n~~~~lp~~~ 83 (192)
+....+-..+..++++++.+ .. ...... ....|+..++++|.+...|+.+.. .+..+++++++|.++++|..+
T Consensus 20 VercedakE~h~ldLssc~l--m~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~ 96 (177)
T KOG4579|consen 20 VERCEDAKELHFLDLSSCQL--MY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL 96 (177)
T ss_pred HHhhHHHHHhhhcccccchh--hH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH
Confidence 33344455566777777775 21 223332 445566678888888888877654 447888888888888888888
Q ss_pred CCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccC
Q 047078 84 GNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~ 123 (192)
..++.|+.++++.|.+...|.-+..+.+|.+|+..+|...
T Consensus 97 Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 8888888888888888888887778888888888777654
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.58 E-value=2.3e-09 Score=85.27 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=94.2
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccC-CCCCcCCcc-cCCCCCccEEEeecCCCc-ccCcccCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED-APVDYLPEG-VGNLFNLHYLSVKNTNVK-KIPKSIGNLLG 88 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~lp~~-~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~ 88 (192)
..+++||.|++++|.| ..+....|.+++++..|.+.+ |+|+.+|.. |+++..++.|.+..|.+. .....+..+++
T Consensus 88 ~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred cchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 5789999999999998 888899999999998887766 899999955 899999999999999988 44457888999
Q ss_pred CCEEEccCCCCccCCh-hhcCCCCCcEEEccccc
Q 047078 89 LEILDLKNSLVRELPV-EIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~ 121 (192)
++.|.+.+|.+..++. .+..+.+++.+.+..|.
T Consensus 166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9999999999998887 56788888888888877
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=4.3e-08 Score=80.11 Aligned_cols=103 Identities=29% Similarity=0.367 Sum_probs=56.6
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEcc
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLK 95 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~ 95 (192)
+|+.|++.+|.+ ..++ .....+++|+.|+++.|++..+|...+.+..|+.|++++|+++.+|..+.....|+.+.++
T Consensus 141 nL~~L~l~~N~i--~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKI--ESLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccch--hhhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhc
Confidence 566666666665 2222 1224566666666666666666655556666666666666666666554444445555555
Q ss_pred CCCCccCChhhcCCCCCcEEEccccc
Q 047078 96 NSLVRELPVEIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 96 ~n~l~~lp~~l~~l~~L~~L~l~~n~ 121 (192)
+|.....+..+.++.++..+.+.+|+
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred CCcceecchhhhhcccccccccCCce
Confidence 55433344444444444444444443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=1.7e-08 Score=82.43 Aligned_cols=148 Identities=25% Similarity=0.274 Sum_probs=101.7
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCC-ccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFK-LMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNL 86 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l 86 (192)
...+..++.++.|.+.+|.+ .++.... ..++ +|+.|+++.|.+..+|..+..++.|+.|+++.|+++++|...+..
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i--~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNI--TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred chhhhcccceeEEecCCccc--ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 34455567788888888887 4444322 3443 888889999888888777888888999999998888888877788
Q ss_pred CCCCEEEccCCCCccCChhhcCCCCCcEEEcccccc-CCCccC-----------ChhHHHhhHHHhhcccccceeecCCC
Q 047078 87 LGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNY-TAGATL-----------AGEAAAKLHEFIDVFVEFHDFLDPAN 154 (192)
Q Consensus 87 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~-~~~~~~-----------~~~~~~~~~~~~~~l~~L~~l~~~~~ 154 (192)
+.|+.+++++|.++.+|..+..+..|+.+.+++|.. .....+ ........+..+..+..++.+....+
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 888889999988888888776667788888888842 211000 00000012455566666777766666
Q ss_pred CCCC
Q 047078 155 GKFG 158 (192)
Q Consensus 155 ~~~~ 158 (192)
....
T Consensus 266 ~i~~ 269 (394)
T COG4886 266 QISS 269 (394)
T ss_pred cccc
Confidence 5433
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.7e-09 Score=83.18 Aligned_cols=142 Identities=15% Similarity=0.060 Sum_probs=85.5
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCc-CCcc-cCCCCCccEEEeecCCCc--ccCcccCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY-LPEG-VGNLFNLHYLSVKNTNVK--KIPKSIGNL 86 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-lp~~-~~~l~~L~~L~l~~n~~~--~lp~~~~~l 86 (192)
+..|++++.|+++.|-+..+.....+...+++|+.|+++.|++.. ..+. -..+++|+.|.++.|.++ ++......+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 457888999999999774445566666789999999999998762 2222 346788888888888877 333223344
Q ss_pred CCCCEEEcc------------------------CCCCccCC--hhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHh
Q 047078 87 LGLEILDLK------------------------NSLVRELP--VEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFI 140 (192)
Q Consensus 87 ~~L~~L~l~------------------------~n~l~~lp--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 140 (192)
|.|+.|.+. +|++-.++ ...+.++.|..|.++.+.+.++...+... ....
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s----~~kt 297 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES----LDKT 297 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc----hhhh
Confidence 555555554 44444333 22344555555555544444332222111 1223
Q ss_pred hcccccceeecCCCCC
Q 047078 141 DVFVEFHDFLDPANGK 156 (192)
Q Consensus 141 ~~l~~L~~l~~~~~~~ 156 (192)
..+++|+.|.+..|..
T Consensus 298 ~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNI 313 (505)
T ss_pred cccccceeeecccCcc
Confidence 5678888888887775
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.45 E-value=1.8e-07 Score=52.10 Aligned_cols=37 Identities=30% Similarity=0.577 Sum_probs=16.3
Q ss_pred ccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccC
Q 047078 66 LHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVREL 102 (192)
Q Consensus 66 L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~l 102 (192)
|++|++++|+++++|+.++++++|+.|++++|.++++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4444444444444444444444444444444444433
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.45 E-value=2.1e-07 Score=51.87 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=21.0
Q ss_pred CCCEEEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 88 GLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+|+.|++++|+++.+|+.++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666665556666666666666665553
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.7e-08 Score=77.87 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=84.5
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCC-CCcCCcccCCCCCccEEEeecCCCcccC--cccCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYLPEGVGNLFNLHYLSVKNTNVKKIP--KSIGNLLGL 89 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n~~~~lp--~~~~~l~~L 89 (192)
.+++++.|.+.+|.+ .+.-...+...+++|..|++..|. +..-.....-+..|+.|++++|++-..+ ...+.++.|
T Consensus 195 ~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 345555556666655 222233344466777777777773 2211122334567889999999977665 467889999
Q ss_pred CEEEccCCCCc--cCChh-----hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 90 EILDLKNSLVR--ELPVE-----IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 90 ~~L~l~~n~l~--~lp~~-----l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
..|.++.+.+. ..|.. ....++|++|++..|++..+..+. .+..+++|..+....+.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~---------~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN---------HLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc---------hhhccchhhhhhccccc
Confidence 99999999987 44543 346789999999999987542222 23445555555544444
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.36 E-value=7e-07 Score=65.41 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=53.3
Q ss_pred CCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCC-CCCCCEEEccCCCCccCCh--hhcCCCCCcEEE
Q 047078 40 FKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGN-LLGLEILDLKNSLVRELPV--EIRNLKKLRYLM 116 (192)
Q Consensus 40 l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~-l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~ 116 (192)
+.+...+++++|.+..+ +.+..+..|.+|.+++|+|+++.+.+.. ++.|+.|.+.+|++.++-. .+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45566677777776655 3466677777777777777766555543 4667777777776664422 345666777777
Q ss_pred ccccccCC
Q 047078 117 VYKYNYTA 124 (192)
Q Consensus 117 l~~n~~~~ 124 (192)
+-+|++..
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 77776653
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=1.8e-08 Score=69.50 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=54.5
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLL 87 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~ 87 (192)
+...+.-.+|...++++|.+ .+++..+...++.++.|++++|.+..+|.++..++.|+.++++.|.+...|.-+.++.
T Consensus 46 vy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLI 123 (177)
T ss_pred HHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHH
Confidence 33344445555556666655 5555555555555666666666666666555566666666666666555555555555
Q ss_pred CCCEEEccCCCCccCChh
Q 047078 88 GLEILDLKNSLVRELPVE 105 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~ 105 (192)
++-.|+..+|...++|.+
T Consensus 124 ~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENARAEIDVD 141 (177)
T ss_pred hHHHhcCCCCccccCcHH
Confidence 555665555555555554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.6e-07 Score=77.39 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=66.1
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEE
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILD 93 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~ 93 (192)
+..++.+.+..|.+ .. .......+++|+.+++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i--~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLI--AK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhh--hh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhhe
Confidence 44455555555554 11 11223456777777777777776654466777777777777777755 3444556677777
Q ss_pred ccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 94 LKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 94 l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+.+|.++.+. ++..++.|+.+++++|.+..
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcchhhh
Confidence 7777777654 34456777777777776654
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.26 E-value=5.9e-07 Score=78.14 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=56.8
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC--cCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L 92 (192)
.+|+.|++.+.......|+..+-..+|+|+.|.+.+-.+. +.-.-..++++|..||+++++++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3455556655544344444444445666666666654443 1112234556666666666666644 455566666666
Q ss_pred EccCCCCccCC--hhhcCCCCCcEEEccccccC
Q 047078 93 DLKNSLVRELP--VEIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 93 ~l~~n~l~~lp--~~l~~l~~L~~L~l~~n~~~ 123 (192)
.+.+-.+..-. .++++|++|+.||++.....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 55554444221 24556666666666655443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=3.1e-07 Score=75.72 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=90.6
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGL 89 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L 89 (192)
....+++++.|++.+|.+ ..+ ......+.+|++|++++|.|+.+ ..+..+..|+.|++.+|.++.+ ..+..+..|
T Consensus 90 ~l~~~~~l~~l~l~~n~i--~~i-~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L 164 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKI--EKI-ENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDI-SGLESLKSL 164 (414)
T ss_pred ccccccceeeeeccccch--hhc-ccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhc-cCCccchhh
Confidence 367789999999999997 333 33246799999999999999977 4567788899999999999966 355568999
Q ss_pred CEEEccCCCCccCChh-hcCCCCCcEEEccccccCCC
Q 047078 90 EILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAG 125 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~ 125 (192)
+.+++++|.+..+... +..+.+++.+++.+|.+..+
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 9999999999977653 57889999999999987653
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=9.5e-08 Score=81.55 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=85.7
Q ss_pred CccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChh-hcCCCCCcEEEccc
Q 047078 41 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVE-IRNLKKLRYLMVYK 119 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~ 119 (192)
-.|.+.+.++|.+..+..++.-++.++.|+++.|++.+.. .+..+++|.+|||+.|.++.+|.- ...+ +|+.|.+++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 3566667777887777677778888999999999988653 677889999999999999888762 2233 488999999
Q ss_pred cccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCccchh
Q 047078 120 YNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPGCLRI 164 (192)
Q Consensus 120 n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~l~~ 164 (192)
|.++.. .++.++++|+.|+++.|-......+..
T Consensus 242 N~l~tL------------~gie~LksL~~LDlsyNll~~hseL~p 274 (1096)
T KOG1859|consen 242 NALTTL------------RGIENLKSLYGLDLSYNLLSEHSELEP 274 (1096)
T ss_pred cHHHhh------------hhHHhhhhhhccchhHhhhhcchhhhH
Confidence 877653 567899999999999998777666555
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=3.6e-06 Score=61.77 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=80.6
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCC-CCCccEEEeecCCCcccCc--ccCCCCCCCEE
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGN-LFNLHYLSVKNTNVKKIPK--SIGNLLGLEIL 92 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~-l~~L~~L~l~~n~~~~lp~--~~~~l~~L~~L 92 (192)
....+++.+|.+ ..-..+.+++.|.+|.+.+|+|+.+.+.+.. +++|..|.+.+|++.++.+ .+..++.|+.|
T Consensus 43 ~~d~iDLtdNdl----~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDL----RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccch----hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 456788888886 2223346889999999999999988777654 6679999999999885543 56788999999
Q ss_pred EccCCCCccCChh----hcCCCCCcEEEcccc
Q 047078 93 DLKNSLVRELPVE----IRNLKKLRYLMVYKY 120 (192)
Q Consensus 93 ~l~~n~l~~lp~~----l~~l~~L~~L~l~~n 120 (192)
.+-+|+++..+.- ++.+++|+.||+.+-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9999999866552 679999999999764
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=8.3e-06 Score=64.31 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=83.7
Q ss_pred hhhCCCcccEEEEeccCCCCCcc--chhhhcCCCccCEEEccCCCCCc--------------CCcccCCCCCccEEEeec
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSF--MNASIANFKLMKVLDLEDAPVDY--------------LPEGVGNLFNLHYLSVKN 73 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~l~~L~~L~l~~n~i~~--------------lp~~~~~l~~L~~L~l~~ 73 (192)
.+.++++|+.|++++|-++...+ .+..+..+..|+.|++.+|.+.. .-...+.-+.|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 35677788899999988743222 23344567888888888887651 112345567788888888
Q ss_pred CCCcccC-----cccCCCCCCCEEEccCCCCc--c---CChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcc
Q 047078 74 TNVKKIP-----KSIGNLLGLEILDLKNSLVR--E---LPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVF 143 (192)
Q Consensus 74 n~~~~lp-----~~~~~l~~L~~L~l~~n~l~--~---lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l 143 (192)
|++..-+ ..+..++.|+.+.+..|.+. . +-..+..++.|+.||+..|-|+. ..+..+.+-+..+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~------egs~~LakaL~s~ 240 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL------EGSVALAKALSSW 240 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh------HHHHHHHHHhccc
Confidence 8766333 23455566777777666654 1 12234566777777777765543 1223344444555
Q ss_pred cccceeecCCCC
Q 047078 144 VEFHDFLDPANG 155 (192)
Q Consensus 144 ~~L~~l~~~~~~ 155 (192)
+.|+.++++...
T Consensus 241 ~~L~El~l~dcl 252 (382)
T KOG1909|consen 241 PHLRELNLGDCL 252 (382)
T ss_pred chheeecccccc
Confidence 556665555444
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=69.82 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=85.9
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccC--cccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIP--KSIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp--~~~~~l~~ 88 (192)
...+|+|++|.+.+-.+...+ .......+++|..||+|+.+++.+ ..+..+++|+.|.+.+-.+.... ..+..+.+
T Consensus 144 g~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 467899999999998872222 233446899999999999999977 66899999999999988777433 46789999
Q ss_pred CCEEEccCCCCccCChh-------hcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVRELPVE-------IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~-------l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.||+|.......+.- -..+|+|+.||.++..+..
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99999998755433321 2258999999999876543
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=6.1e-05 Score=61.53 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=66.6
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCC-CCCcCCcccCCCCCccEEEeecC-CCcccCcccCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDA-PVDYLPEGVGNLFNLHYLSVKNT-NVKKIPKSIGN 85 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~lp~~~~~l~~L~~L~l~~n-~~~~lp~~~~~ 85 (192)
+..+..+.+++.|++.+|.+ ..++ .-..+|+.|.++++ .++.+|..+ ...|++|++.+| .+..+|+.
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L--~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s--- 113 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDI--ESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES--- 113 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCC--cccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc---
Confidence 34456678899999999976 4444 22346888898875 566777554 257888888888 56667654
Q ss_pred CCCCCEEEccCCC---CccCChhhcCC------------------CCCcEEEccccccC
Q 047078 86 LLGLEILDLKNSL---VRELPVEIRNL------------------KKLRYLMVYKYNYT 123 (192)
Q Consensus 86 l~~L~~L~l~~n~---l~~lp~~l~~l------------------~~L~~L~l~~n~~~ 123 (192)
|+.|++..+. +..+|+++..| ++|++|++++|...
T Consensus 114 ---Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 114 ---VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ---cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 4555555543 44666654333 26777888776543
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=2.6e-05 Score=61.62 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=70.9
Q ss_pred CCCcccEEEEeccCCCC--CccchhhhcCCCccCEEEccCCCCCc-----CCcccCCCCCccEEEeecCCCc-----ccC
Q 047078 13 KHSKVRSVFLFNVDKLP--DSFMNASIANFKLMKVLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTNVK-----KIP 80 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~--~~~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~-----~lp 80 (192)
+-+.||++.+..|.... .......+...+.|+.+.++.|.|.. +-..+...++|+.||+.+|-++ .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 33456666666665521 11122233344566666666665541 1233555666666666666654 233
Q ss_pred cccCCCCCCCEEEccCCCCc-cCChh----hc-CCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCC
Q 047078 81 KSIGNLLGLEILDLKNSLVR-ELPVE----IR-NLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPAN 154 (192)
Q Consensus 81 ~~~~~l~~L~~L~l~~n~l~-~lp~~----l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 154 (192)
+.++.+++|+.+.+++|.++ .-... +. ..++|+.+.+.+|.+.. ..+..+...+...+.|..|.++.|
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~------da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR------DAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH------HHHHHHHHHHhcchhhHHhcCCcc
Confidence 34455566666666666554 22211 11 34566666666665442 122223334445667777777776
Q ss_pred CC
Q 047078 155 GK 156 (192)
Q Consensus 155 ~~ 156 (192)
..
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 65
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=3.8e-05 Score=59.81 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=67.0
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCccc-CCCCCccEEEeecCCCc--ccCcccCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTNVK--KIPKSIGNLLG 88 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~-~~l~~L~~L~l~~n~~~--~lp~~~~~l~~ 88 (192)
..++.++++++.+|.+..++..+.+..++++|++|+++.|.+....... ..+.+|+++-+.++.+. ........+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 5677889999999998556667777789999999999999887333333 56788999988888766 44445567788
Q ss_pred CCEEEccCCCCc
Q 047078 89 LEILDLKNSLVR 100 (192)
Q Consensus 89 L~~L~l~~n~l~ 100 (192)
++.+.++.|+++
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 888877777544
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.00022 Score=54.32 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=64.6
Q ss_pred cCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecC--CCc-ccCcccCCCCCCCEEEccCCCCcc---CChhhcCCCC
Q 047078 38 ANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNT--NVK-KIPKSIGNLLGLEILDLKNSLVRE---LPVEIRNLKK 111 (192)
Q Consensus 38 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n--~~~-~lp~~~~~l~~L~~L~l~~n~l~~---lp~~l~~l~~ 111 (192)
..+.+|+.+.+.+..++.+ ..+..|++|+.|.++.| +++ .++.....+++|+++.+++|.++. ++ .+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 4667788888877776644 34667889999999999 555 666666677999999999998773 32 3567788
Q ss_pred CcEEEccccccCC
Q 047078 112 LRYLMVYKYNYTA 124 (192)
Q Consensus 112 L~~L~l~~n~~~~ 124 (192)
|..|++.+|....
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8899999887664
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=1.3e-05 Score=61.72 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=78.8
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCc--ccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPK--SIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~--~~~~l~ 87 (192)
+.+++.+++-|++-++.+ .++ .+...++.|++|.|+-|+|+.+ ..+..+.+|+.|++..|.|.++.+ -+.+++
T Consensus 14 K~sdl~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 14 KCSDLENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HhhHHHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 345677788889989887 333 2335789999999999999977 457788999999999999986654 467899
Q ss_pred CCCEEEccCCCCc-cCChh-----hcCCCCCcEEE
Q 047078 88 GLEILDLKNSLVR-ELPVE-----IRNLKKLRYLM 116 (192)
Q Consensus 88 ~L~~L~l~~n~l~-~lp~~-----l~~l~~L~~L~ 116 (192)
+|+.|.|..|... +-+.. +.-+++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999999865 44443 45788888876
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0001 Score=57.49 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCccCEEEccCCCCC---cCCcccCCCCCccEEEeecCCCcccCccc-CCCCCCCEEEccCCCCc--cCChhhcCCCCC
Q 047078 39 NFKLMKVLDLEDAPVD---YLPEGVGNLFNLHYLSVKNTNVKKIPKSI-GNLLGLEILDLKNSLVR--ELPVEIRNLKKL 112 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~---~lp~~~~~l~~L~~L~l~~n~~~~lp~~~-~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L 112 (192)
..+.++.+++.+|.|+ ++..-+.+|++|++|+++.|++...-... -...+|+.+-|.+..+. .....+..+|++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5678999999999988 45455678999999999999987222232 46678999999887654 666677889999
Q ss_pred cEEEccccccC
Q 047078 113 RYLMVYKYNYT 123 (192)
Q Consensus 113 ~~L~l~~n~~~ 123 (192)
+.|+++.|+++
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 99999988543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.96 E-value=0.0024 Score=52.39 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=58.3
Q ss_pred CCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCC-CcccCcccCCCCCCCEEEccCC-CCccCChhhcCCCCCcEEE
Q 047078 39 NFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTN-VKKIPKSIGNLLGLEILDLKNS-LVRELPVEIRNLKKLRYLM 116 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~-~~~lp~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~ 116 (192)
.+.+++.|++++|.++.+|. -..+|+.|.+.++. ++.+|..+ .++|+.|.+++| .+..+|.. |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 57899999999999998882 23469999998865 66777655 258999999998 67777754 55566
Q ss_pred ccccccCCCccCCh
Q 047078 117 VYKYNYTAGATLAG 130 (192)
Q Consensus 117 l~~n~~~~~~~~~~ 130 (192)
+..+....+..+|.
T Consensus 119 L~~n~~~~L~~LPs 132 (426)
T PRK15386 119 IKGSATDSIKNVPN 132 (426)
T ss_pred eCCCCCcccccCcc
Confidence 66554444444554
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.57 E-value=0.00078 Score=31.40 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=7.9
Q ss_pred CCEEEccCCCCccCChh
Q 047078 89 LEILDLKNSLVRELPVE 105 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~ 105 (192)
|+.|++++|+++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444444
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.0012 Score=50.46 Aligned_cols=103 Identities=23% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCC--CCC-cCCcccCCCCCccEEEeecCCCccc--CcccCCCCC
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDA--PVD-YLPEGVGNLFNLHYLSVKNTNVKKI--PKSIGNLLG 88 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n--~i~-~lp~~~~~l~~L~~L~l~~n~~~~l--p~~~~~l~~ 88 (192)
+..++.+.+.+... . +-..+..+++|+.|.++.| .+. .++......++|+++.+++|+++.+ -.....+.+
T Consensus 42 ~~~le~ls~~n~gl--t--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGL--T--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccce--e--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34444555555543 1 1222346789999999999 444 4444445569999999999998842 123456677
Q ss_pred CCEEEccCCCCccCCh---h-hcCCCCCcEEEcccc
Q 047078 89 LEILDLKNSLVRELPV---E-IRNLKKLRYLMVYKY 120 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~---~-l~~l~~L~~L~l~~n 120 (192)
|..|++..|..+.+-. . +.-+++|++|+-...
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8888888877654322 2 335678888776543
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.54 E-value=0.00088 Score=31.22 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=8.0
Q ss_pred cCEEEccCCCCCcCCcc
Q 047078 43 MKVLDLEDAPVDYLPEG 59 (192)
Q Consensus 43 L~~L~l~~n~i~~lp~~ 59 (192)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44455555544444443
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.41 E-value=0.014 Score=45.26 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=53.0
Q ss_pred hhhhCCCcccEEEEeccCCCC--CccchhhhcCCCccCEEEccCCCCCcCC-c-------------ccCCCCCccEEEee
Q 047078 9 LESIKHSKVRSVFLFNVDKLP--DSFMNASIANFKLMKVLDLEDAPVDYLP-E-------------GVGNLFNLHYLSVK 72 (192)
Q Consensus 9 ~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~-------------~~~~l~~L~~L~l~ 72 (192)
+...+|++|+.+++++|.+++ ....+..++.-+.|..|.+++|.+..+. . ....-+.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 344566666666666665522 1112233345556666666666544111 1 11223455555555
Q ss_pred cCCCcccCc-----ccCCCCCCCEEEccCCCCc-c-CCh----hhcCCCCCcEEEccccccC
Q 047078 73 NTNVKKIPK-----SIGNLLGLEILDLKNSLVR-E-LPV----EIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 73 ~n~~~~lp~-----~~~~l~~L~~L~l~~n~l~-~-lp~----~l~~l~~L~~L~l~~n~~~ 123 (192)
.|++..-|. .+.....|..+.+..|.++ + +.. ++..+.+|+.|++..|-|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 555543332 1222234555555555554 1 100 2334555555555555443
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.40 E-value=4.8e-05 Score=57.31 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEcc
Q 047078 39 NFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVY 118 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~ 118 (192)
.+...+.||++.|++..+...+.-+..+..++++.|.+..+|.+++++..+..+++..|+.+..|.+.+..+.+++++..
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 45666777777776666666666666777777777777777777777777777777777777777777777777777766
Q ss_pred cccc
Q 047078 119 KYNY 122 (192)
Q Consensus 119 ~n~~ 122 (192)
++.+
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 6654
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.32 E-value=0.024 Score=44.06 Aligned_cols=154 Identities=14% Similarity=0.036 Sum_probs=78.2
Q ss_pred hhhhhCCCcccEEEEeccCCC--CCccchhhhcCCCccCEEEccCCCCC----cCC-------cccCCCCCccEEEeecC
Q 047078 8 ALESIKHSKVRSVFLFNVDKL--PDSFMNASIANFKLMKVLDLEDAPVD----YLP-------EGVGNLFNLHYLSVKNT 74 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~l~~L~~L~l~~n~i~----~lp-------~~~~~l~~L~~L~l~~n 74 (192)
+.....+..+..+++++|.++ +..+....+.+-.+|+..+++.--.. .++ +.+.++++|+..++++|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 344445666777777777763 11122222234455555555443111 111 22334455555566555
Q ss_pred CCc-ccCcc----cCCCCCCCEEEccCCCCccCChh--------------hcCCCCCcEEEccccccCCCc---------
Q 047078 75 NVK-KIPKS----IGNLLGLEILDLKNSLVRELPVE--------------IRNLKKLRYLMVYKYNYTAGA--------- 126 (192)
Q Consensus 75 ~~~-~lp~~----~~~l~~L~~L~l~~n~l~~lp~~--------------l~~l~~L~~L~l~~n~~~~~~--------- 126 (192)
-+. +.|+. +.+...|.+|.+++|.+..+..+ ..+-|.|+.+....|++.++.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 554 33332 33445555555555554422221 112345555555555543321
Q ss_pred --------------cCChhHHHhhHHHhhcccccceeecCCCCCCCCcc
Q 047078 127 --------------TLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPGC 161 (192)
Q Consensus 127 --------------~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 161 (192)
--|..+...+..++..+++|+.|++..|.+...+.
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 11233444566777888999999999988766554
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0016 Score=51.05 Aligned_cols=138 Identities=12% Similarity=0.029 Sum_probs=81.3
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cC-CcccCC-CCCccEEEeecCCC--c--ccC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YL-PEGVGN-LFNLHYLSVKNTNV--K--KIP 80 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~l-p~~~~~-l~~L~~L~l~~n~~--~--~lp 80 (192)
...+.+-.+|+.|+++.++-....-..-++..++.|..|+++++.+. .. --.+.+ -..|..|++++++- . ++.
T Consensus 227 ~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 45567778888888888875111112224457888888888888654 11 111122 23466677777641 1 232
Q ss_pred cccCCCCCCCEEEccCCC-Cc-cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCC
Q 047078 81 KSIGNLLGLEILDLKNSL-VR-ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPAN 154 (192)
Q Consensus 81 ~~~~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 154 (192)
.-...++++.+|||++|. ++ ..-..+.+++-|+++.++.|..- ++.. .-.+...++|.+|++.+.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-----~p~~----~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-----IPET----LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-----ChHH----eeeeccCcceEEEEeccc
Confidence 233568888888888774 55 55556778888888888887542 1111 112345667776665443
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.24 E-value=6e-05 Score=56.80 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=78.3
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLL 87 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~ 87 (192)
+.++..+...+.|+++.|.. .-.+.-++-++.+..|+++.|.+..+|..++++..+..+++..|..+..|.++++.+
T Consensus 35 v~ei~~~kr~tvld~~s~r~---vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRL---VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHH---HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 45567788888999999986 334555567788999999999999999999999999999999999999999999999
Q ss_pred CCCEEEccCCCCc
Q 047078 88 GLEILDLKNSLVR 100 (192)
Q Consensus 88 ~L~~L~l~~n~l~ 100 (192)
+++.+++.+|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999999998865
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0003 Score=54.41 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChh--hcCCCCCcEEE
Q 047078 39 NFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVE--IRNLKKLRYLM 116 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~ 116 (192)
.+.+.+.|+.-++.+..+ .-...|+.|+.|.++-|.|+.+ ..+..|..|+.|.|+.|.+.++.+- +.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 466777788888888755 2346789999999999999866 4567888999999999998877653 56899999999
Q ss_pred ccccccCCCccCChhHHHhhHHHhhcccccceeec
Q 047078 117 VYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLD 151 (192)
Q Consensus 117 l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 151 (192)
+..|.=.+.. +... -...+..+++|+.|+.
T Consensus 95 L~ENPCc~~a--g~nY---R~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEA--GQNY---RRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCccccc--chhH---HHHHHHHcccchhccC
Confidence 9888655421 1111 1133456677776654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.98 E-value=0.047 Score=36.96 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=52.2
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
.++++|+.+.+.+ .+ ..+....+.++++|+.+.+..+ +..++.. +.....++.+.+.. .+..++. .|..+..+
T Consensus 9 ~~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 9 YNCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred hCCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 3566777777764 33 5667777777778888888764 6655533 56666788888755 4444444 45557788
Q ss_pred CEEEccCCCCccCChh-hcCCCCCcEEEccc
Q 047078 90 EILDLKNSLVRELPVE-IRNLKKLRYLMVYK 119 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~ 119 (192)
+.+.+..+ +..++.. +.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 88887664 5545443 3444 777776654
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.77 E-value=0.0064 Score=26.35 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=5.4
Q ss_pred CCCEEEccCCCCccC
Q 047078 88 GLEILDLKNSLVREL 102 (192)
Q Consensus 88 ~L~~L~l~~n~l~~l 102 (192)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.00046 Score=53.93 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=68.8
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCC-CCCc--CCcccCCCCCccEEEeecCCCc-ccCc-ccCC-
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDA-PVDY--LPEGVGNLFNLHYLSVKNTNVK-KIPK-SIGN- 85 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~--lp~~~~~l~~L~~L~l~~n~~~-~lp~-~~~~- 85 (192)
..|.+|+-|.+.++.+ .+-...-++.=.+|+.|+++.+ .+++ +---+.+++.|..|+++||... +... .+..
T Consensus 207 s~C~kLk~lSlEg~~L--dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRL--DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHhhhhcccccccc--CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 3455566666666665 2222222334456666666665 3442 1111455666666777776644 2221 1111
Q ss_pred CCCCCEEEccCCC--Cc--cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 86 LLGLEILDLKNSL--VR--ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 86 l~~L~~L~l~~n~--l~--~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
-..|..|+++|+. +. .+..-...+++|.+||++.|..-. + .....+..++.|+++.++...
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-----~----~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-----N----DCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-----c----hHHHHHHhcchheeeehhhhc
Confidence 1456666666642 21 332223467778888887764322 1 122445667777777766544
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.73 E-value=0.034 Score=26.73 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=12.3
Q ss_pred CCCCEEEccCCCCccCChhh
Q 047078 87 LGLEILDLKNSLVRELPVEI 106 (192)
Q Consensus 87 ~~L~~L~l~~n~l~~lp~~l 106 (192)
++|+.|++++|.++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666553
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.73 E-value=0.034 Score=26.73 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=12.3
Q ss_pred CCCCEEEccCCCCccCChhh
Q 047078 87 LGLEILDLKNSLVRELPVEI 106 (192)
Q Consensus 87 ~~L~~L~l~~n~l~~lp~~l 106 (192)
++|+.|++++|.++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666553
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.72 E-value=0.13 Score=34.79 Aligned_cols=94 Identities=16% Similarity=0.286 Sum_probs=52.6
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
..+++|+.+.+.++ + ..+....+.++.+++.+.+.. .+..++.. +.....++.+.+..+ +..++. .+..+ .+
T Consensus 32 ~~~~~l~~i~~~~~-~--~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-L--TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TT-TT-SEEEESST-T--SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred cccccccccccccc-c--cccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 46678999999775 4 678888888998999999976 55555544 666999999999775 665555 56666 88
Q ss_pred CEEEccCCCCccCChh-hcCCCCC
Q 047078 90 EILDLKNSLVRELPVE-IRNLKKL 112 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~-l~~l~~L 112 (192)
+.+.+.. .+..++.. +.++++|
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEE-TT-B-SS----GGG-----
T ss_pred eEEEECC-CccEECCccccccccC
Confidence 9888765 45555543 4455555
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.38 E-value=0.036 Score=26.60 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=11.5
Q ss_pred CccCEEEccCCCCCcCCcc
Q 047078 41 KLMKVLDLEDAPVDYLPEG 59 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~lp~~ 59 (192)
++|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.38 E-value=0.036 Score=26.60 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=11.5
Q ss_pred CccCEEEccCCCCCcCCcc
Q 047078 41 KLMKVLDLEDAPVDYLPEG 59 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~lp~~ 59 (192)
++|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.31 E-value=0.32 Score=23.48 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=12.1
Q ss_pred CCCEEEccCCCCccCCh
Q 047078 88 GLEILDLKNSLVRELPV 104 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~ 104 (192)
+|+.|.+++|+++++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777774
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.74 E-value=0.1 Score=38.80 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=37.1
Q ss_pred cCEEEccCCCCCcCC-cccCCCCCccEEEeecCC-Cc-ccCcccC-CCCCCCEEEccCCC-Cc-cCChhhcCCCCCcEEE
Q 047078 43 MKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTN-VK-KIPKSIG-NLLGLEILDLKNSL-VR-ELPVEIRNLKKLRYLM 116 (192)
Q Consensus 43 L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~-~~-~lp~~~~-~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~ 116 (192)
++.++-++..|.... +.+..++.++.+.+.+|. +. ..-+.++ -.++|+.|++++|. |+ .--..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 334444444444222 334455555555555554 22 1112222 23666777776663 55 2223455666666666
Q ss_pred ccc
Q 047078 117 VYK 119 (192)
Q Consensus 117 l~~ 119 (192)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 554
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.73 E-value=0.71 Score=22.30 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=9.0
Q ss_pred CccCEEEccCCCCCc
Q 047078 41 KLMKVLDLEDAPVDY 55 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~ 55 (192)
++|+.|+++.|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666653
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.14 E-value=0.35 Score=22.53 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=3.9
Q ss_pred CCcEEEccccc
Q 047078 111 KLRYLMVYKYN 121 (192)
Q Consensus 111 ~L~~L~l~~n~ 121 (192)
+|+.|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 34444444443
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.01 E-value=0.73 Score=38.29 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCC--CCCcCC----cccCCCCCccEEEeecCC-CcccC-cccC-
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDA--PVDYLP----EGVGNLFNLHYLSVKNTN-VKKIP-KSIG- 84 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n--~i~~lp----~~~~~l~~L~~L~l~~n~-~~~lp-~~~~- 84 (192)
++.|+.+.+.++......-...+....+.|+.|+++++ .+...+ .....+.+|+.++++++. +++.- ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666676666654111112333346677777777652 111111 222344666777777666 44211 1222
Q ss_pred CCCCCCEEEccCCC-Cc--cCChhhcCCCCCcEEEcccccc
Q 047078 85 NLLGLEILDLKNSL-VR--ELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 85 ~l~~L~~L~l~~n~-l~--~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
.++.|+.|.+.++. ++ .+-.-...++.|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777755554 33 2222233566677777776643
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.89 E-value=0.24 Score=36.80 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=48.4
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCC-CC-cCCcccC-CCCCccEEEeecCC-Ccc-cCcccCCCCCCC
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VD-YLPEGVG-NLFNLHYLSVKNTN-VKK-IPKSIGNLLGLE 90 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~-~lp~~~~-~l~~L~~L~l~~n~-~~~-lp~~~~~l~~L~ 90 (192)
.++.++.++..+ ..+.-.-+..++.++.|.+.++. +. ..-+-++ -.++|+.|++++|. |++ =-..+..+++|+
T Consensus 102 ~IeaVDAsds~I--~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSI--MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchH--HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 366777777776 33333344566777777777764 33 1112222 35778999999875 773 223566778888
Q ss_pred EEEccC
Q 047078 91 ILDLKN 96 (192)
Q Consensus 91 ~L~l~~ 96 (192)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 877655
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.20 E-value=2.9 Score=20.28 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=9.0
Q ss_pred CccCEEEccCCCCC
Q 047078 41 KLMKVLDLEDAPVD 54 (192)
Q Consensus 41 ~~L~~L~l~~n~i~ 54 (192)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777776665
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=71.50 E-value=1.5 Score=36.49 Aligned_cols=112 Identities=20% Similarity=0.155 Sum_probs=69.3
Q ss_pred hhhhhCCCcccEEEEeccCCCCCcc---chhhhcCCCccCEEEccCCC-CCcCC-cccC-CCCCccEEEeecCC-Cc--c
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSF---MNASIANFKLMKVLDLEDAP-VDYLP-EGVG-NLFNLHYLSVKNTN-VK--K 78 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~l~~L~~L~l~~n~-i~~lp-~~~~-~l~~L~~L~l~~n~-~~--~ 78 (192)
.+....++.|++|.+.++....... .......+++|+.++++++. ++... ..+. ..+.|+.|.+..+. ++ .
T Consensus 207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 207 DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence 3556788999999998731100111 12233467899999999887 66322 3333 36789999977776 55 2
Q ss_pred cCcccCCCCCCCEEEccCCCC-c--cCChhhcCCCCCcEEEccc
Q 047078 79 IPKSIGNLLGLEILDLKNSLV-R--ELPVEIRNLKKLRYLMVYK 119 (192)
Q Consensus 79 lp~~~~~l~~L~~L~l~~n~l-~--~lp~~l~~l~~L~~L~l~~ 119 (192)
+-.-...++.|+.|+++++.. + .+.....++++|+.+.+..
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 323345678899999998753 2 3444444566666655443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.83 E-value=5.7 Score=34.12 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=33.3
Q ss_pred CCccEEEeecCCCcccC--ccc-CCCCCCCEEEccCC--CCccCChhhcCC--CCCcEEEccccccCCC
Q 047078 64 FNLHYLSVKNTNVKKIP--KSI-GNLLGLEILDLKNS--LVRELPVEIRNL--KKLRYLMVYKYNYTAG 125 (192)
Q Consensus 64 ~~L~~L~l~~n~~~~lp--~~~-~~l~~L~~L~l~~n--~l~~lp~~l~~l--~~L~~L~l~~n~~~~~ 125 (192)
+.+..+.+++|++..+. .++ ...|+|..|+|++| .+... .++.++ ..|+.|.+.+|++...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccc
Confidence 44555666666655221 122 34577777777777 22222 233333 3567777777777653
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=61.98 E-value=3.5 Score=34.27 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=73.7
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC---cCCcccCCCCCccEEEeecCC-Cccc-----Cc
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD---YLPEGVGNLFNLHYLSVKNTN-VKKI-----PK 81 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~---~lp~~~~~l~~L~~L~l~~n~-~~~l-----p~ 81 (192)
.....+|+.+-+++++...+.-....-.+.+.|+.+++..+... .+-.--...+.|+.+.++.+. +++. ..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 36778899999999985111111111137788999998887543 233334567888888888776 3322 23
Q ss_pred ccCCCCCCCEEEccCCCCc--cCChhhcCCCCCcEEEcccccc
Q 047078 82 SIGNLLGLEILDLKNSLVR--ELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 82 ~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
.-..+..|+.+.+.++... ..-+.+..+++|+.+++.+++.
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 3356778899999888754 4444567788898888887754
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=61.94 E-value=6.9 Score=32.58 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=73.7
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCC-CCcCC--cccCCCCCccEEEeecCCCc---ccCcccCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYLP--EGVGNLFNLHYLSVKNTNVK---KIPKSIGN 85 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~lp--~~~~~l~~L~~L~l~~n~~~---~lp~~~~~ 85 (192)
-.+..|+.|..+++...........-.+..+|+++.++.++ ++... .--...++|+.+++..+... .+-+--.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 45677888888887642222222233478999999999985 55322 22346788999999988743 23333357
Q ss_pred CCCCCEEEccCCC-CccC-----ChhhcCCCCCcEEEccccccCC
Q 047078 86 LLGLEILDLKNSL-VREL-----PVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 86 l~~L~~L~l~~n~-l~~l-----p~~l~~l~~L~~L~l~~n~~~~ 124 (192)
++.||.+.++.+. ++.. ...-..+..|..+.+.+++...
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 8999999999775 3322 2223456678888888886543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.74 E-value=12 Score=32.24 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=16.9
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDA 51 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 51 (192)
+.+.+.++.+++|.+...+-...+-...++|.+|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344445555555554222222222224455555555555
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.47 E-value=22 Score=36.65 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=19.8
Q ss_pred EeecCCCcccCc-ccCCCCCCCEEEccCCCCc
Q 047078 70 SVKNTNVKKIPK-SIGNLLGLEILDLKNSLVR 100 (192)
Q Consensus 70 ~l~~n~~~~lp~-~~~~l~~L~~L~l~~n~l~ 100 (192)
||++|+|+.+|+ .|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 356677776665 3456677777777776653
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.05 E-value=20 Score=16.69 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=9.9
Q ss_pred CCCCcEEEccccc
Q 047078 109 LKKLRYLMVYKYN 121 (192)
Q Consensus 109 l~~L~~L~l~~n~ 121 (192)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888874
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.13 E-value=41 Score=34.86 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=22.8
Q ss_pred EeccCCCCCccchhhhcCCCccCEEEccCCCCC
Q 047078 22 LFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD 54 (192)
Q Consensus 22 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 54 (192)
|++|.+ ..+....|..+++|+.|+|++|.+.
T Consensus 2 LSnN~L--stLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKI--STIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcC--CccChHHhccCCCceEEEeeCCccc
Confidence 566776 6677777777777888888877766
Done!