Query 047078
Match_columns 192
No_of_seqs 133 out of 2329
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:44:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e6j_A Variable lymphocyte rec 99.7 2.5E-17 8.7E-22 123.8 13.0 133 15-159 40-174 (229)
2 3m19_A Variable lymphocyte rec 99.7 1.2E-16 4.1E-21 121.5 13.2 139 11-161 55-196 (251)
3 2v9t_B SLIT homolog 2 protein 99.7 8.9E-17 3.1E-21 120.1 12.2 134 15-160 32-168 (220)
4 4g8a_A TOLL-like receptor 4; l 99.7 5.5E-17 1.9E-21 137.2 11.6 135 15-160 52-189 (635)
5 4fcg_A Uncharacterized protein 99.7 9.6E-17 3.3E-21 126.8 11.9 149 11-164 123-297 (328)
6 4fcg_A Uncharacterized protein 99.7 4.1E-17 1.4E-21 128.9 9.3 131 11-155 100-240 (328)
7 3rfs_A Internalin B, repeat mo 99.7 6.7E-16 2.3E-20 118.7 13.2 136 11-158 81-219 (272)
8 4ezg_A Putative uncharacterize 99.7 5.3E-16 1.8E-20 113.8 11.8 130 12-158 41-173 (197)
9 2v70_A SLIT-2, SLIT homolog 2 99.7 4E-16 1.4E-20 116.5 11.2 134 15-160 32-169 (220)
10 2o6s_A Variable lymphocyte rec 99.7 8.9E-16 3.1E-20 113.4 12.9 133 14-158 27-162 (208)
11 2o6q_A Variable lymphocyte rec 99.7 9.4E-16 3.2E-20 117.7 12.2 110 12-123 58-170 (270)
12 3m19_A Variable lymphocyte rec 99.7 8.9E-16 3E-20 116.6 11.9 134 15-160 35-171 (251)
13 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-15 5.7E-20 117.0 13.1 136 13-160 103-241 (285)
14 2o6q_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 115.7 13.2 137 12-160 82-221 (270)
15 1p9a_G Platelet glycoprotein I 99.6 1E-15 3.4E-20 119.0 11.2 133 11-157 51-185 (290)
16 1a9n_A U2A', U2A'; complex (nu 99.6 5.7E-16 1.9E-20 111.7 8.5 136 9-155 13-151 (176)
17 2ell_A Acidic leucine-rich nuc 99.6 9E-16 3.1E-20 109.6 9.3 136 13-157 22-160 (168)
18 1ozn_A Reticulon 4 receptor; N 99.6 1.4E-15 4.7E-20 117.5 10.9 146 11-158 52-215 (285)
19 3rfs_A Internalin B, repeat mo 99.6 2.2E-15 7.4E-20 115.9 11.8 140 7-160 55-197 (272)
20 3vq2_A TLR4, TOLL-like recepto 99.6 1.5E-15 5E-20 128.5 11.7 133 15-158 32-167 (606)
21 2o6s_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 112.7 9.7 112 11-124 48-162 (208)
22 2je0_A Acidic leucine-rich nuc 99.6 5.5E-16 1.9E-20 108.7 7.2 131 13-152 15-148 (149)
23 2z62_A TOLL-like receptor 4, v 99.6 3.5E-15 1.2E-19 114.7 11.9 133 15-158 28-163 (276)
24 4ezg_A Putative uncharacterize 99.6 6.5E-15 2.2E-19 108.0 12.5 134 7-157 58-194 (197)
25 1p9a_G Platelet glycoprotein I 99.6 5.7E-15 1.9E-19 114.7 12.7 135 11-159 73-210 (290)
26 1w8a_A SLIT protein; signaling 99.6 2.3E-15 7.8E-20 110.1 9.9 107 16-124 30-140 (192)
27 1ogq_A PGIP-2, polygalacturona 99.6 4.2E-16 1.4E-20 122.3 6.2 111 11-123 72-187 (313)
28 3rgz_A Protein brassinosteroid 99.6 3.2E-15 1.1E-19 130.1 12.2 110 12-123 439-551 (768)
29 3e6j_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 111.3 11.2 112 11-124 60-173 (229)
30 4b8c_D Glucose-repressible alc 99.6 8.6E-16 2.9E-20 133.0 7.3 111 11-124 220-330 (727)
31 1h6u_A Internalin H; cell adhe 99.6 1.4E-14 4.7E-19 113.4 13.4 109 9-124 57-165 (308)
32 1ogq_A PGIP-2, polygalacturona 99.6 2.1E-15 7.3E-20 118.2 8.8 112 10-124 96-211 (313)
33 3v47_A TOLL-like receptor 5B a 99.6 1.5E-14 5.3E-19 118.2 13.6 136 13-160 273-411 (455)
34 1dce_A Protein (RAB geranylger 99.6 7.4E-15 2.5E-19 123.9 11.8 104 16-124 442-547 (567)
35 1xeu_A Internalin C; cellular 99.6 8.3E-15 2.8E-19 112.2 11.0 124 12-155 60-183 (263)
36 2xot_A Amphoterin-induced prot 99.6 1E-14 3.5E-19 116.5 11.9 109 13-123 62-176 (361)
37 2v70_A SLIT-2, SLIT homolog 2 99.6 8.9E-15 3E-19 109.2 10.8 112 11-124 53-167 (220)
38 1h6t_A Internalin B; cell adhe 99.6 2E-14 6.9E-19 111.6 13.0 130 9-157 62-191 (291)
39 1xeu_A Internalin C; cellular 99.6 1.2E-14 4E-19 111.4 11.4 132 8-159 34-165 (263)
40 2z62_A TOLL-like receptor 4, v 99.6 1.4E-14 4.8E-19 111.3 11.8 113 10-124 47-163 (276)
41 2z80_A TOLL-like receptor 2, v 99.6 2.5E-15 8.6E-20 119.4 7.6 105 15-121 52-160 (353)
42 2v9t_B SLIT homolog 2 protein 99.6 1.3E-14 4.4E-19 108.3 11.0 113 10-124 51-166 (220)
43 3zyi_A Leucine-rich repeat-con 99.6 8.6E-15 2.9E-19 120.1 10.9 110 12-123 96-209 (452)
44 2z63_A TOLL-like receptor 4, v 99.6 1.3E-14 4.6E-19 121.5 12.2 133 15-158 28-163 (570)
45 2xot_A Amphoterin-induced prot 99.6 2.3E-14 7.7E-19 114.5 12.9 137 15-160 39-179 (361)
46 3zyj_A Leucine-rich repeat-con 99.6 8.3E-15 2.8E-19 119.8 10.4 111 11-123 84-198 (440)
47 3rgz_A Protein brassinosteroid 99.6 7E-15 2.4E-19 128.0 10.5 139 11-161 414-555 (768)
48 1h6u_A Internalin H; cell adhe 99.6 4E-14 1.4E-18 110.7 13.6 128 11-157 81-208 (308)
49 1w8a_A SLIT protein; signaling 99.6 2E-14 6.8E-19 105.1 11.0 129 18-161 11-143 (192)
50 2z66_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 114.5 9.1 137 11-159 122-263 (306)
51 2wfh_A SLIT homolog 2 protein 99.6 2E-14 6.7E-19 105.3 10.8 125 19-158 14-140 (193)
52 2ell_A Acidic leucine-rich nuc 99.6 6.1E-15 2.1E-19 105.3 7.8 109 12-124 46-161 (168)
53 3o6n_A APL1; leucine-rich repe 99.6 1.2E-14 4E-19 116.9 10.4 132 13-156 43-177 (390)
54 2xwt_C Thyrotropin receptor; s 99.6 9.7E-15 3.3E-19 110.0 9.3 110 11-123 51-169 (239)
55 2z81_A CD282 antigen, TOLL-lik 99.6 2.9E-14 1E-18 119.1 12.7 135 12-159 358-512 (549)
56 4b8c_D Glucose-repressible alc 99.6 4.3E-15 1.5E-19 128.6 7.8 119 32-161 215-333 (727)
57 2z7x_B TOLL-like receptor 1, v 99.6 2.3E-14 7.9E-19 119.2 11.8 125 15-156 21-150 (520)
58 1h6t_A Internalin B; cell adhe 99.6 1.8E-14 6E-19 112.0 10.2 132 10-160 41-172 (291)
59 3zyi_A Leucine-rich repeat-con 99.6 1.8E-14 6.1E-19 118.2 10.8 106 15-122 75-183 (452)
60 3vq2_A TLR4, TOLL-like recepto 99.6 2E-14 6.7E-19 121.6 11.4 113 10-124 51-167 (606)
61 2id5_A Lingo-1, leucine rich r 99.6 1.3E-14 4.5E-19 119.5 9.9 106 16-123 33-141 (477)
62 2o6r_A Variable lymphocyte rec 99.6 4.4E-14 1.5E-18 101.7 11.4 83 41-123 28-113 (177)
63 2z80_A TOLL-like receptor 2, v 99.6 8.4E-15 2.9E-19 116.4 8.3 112 11-124 72-188 (353)
64 2id5_A Lingo-1, leucine rich r 99.6 2.2E-14 7.5E-19 118.2 10.8 134 10-155 51-187 (477)
65 4eco_A Uncharacterized protein 99.5 2.9E-14 9.8E-19 121.8 11.6 132 13-156 431-578 (636)
66 3zyj_A Leucine-rich repeat-con 99.5 2.5E-14 8.6E-19 116.9 10.8 109 11-122 108-219 (440)
67 2z66_A Variable lymphocyte rec 99.5 2E-14 6.9E-19 111.9 9.7 135 12-158 98-237 (306)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.1E-14 1.4E-18 118.9 12.2 125 15-156 52-181 (562)
69 2wfh_A SLIT homolog 2 protein 99.5 5.5E-14 1.9E-18 102.9 11.4 107 15-124 31-140 (193)
70 2z81_A CD282 antigen, TOLL-lik 99.5 9.4E-15 3.2E-19 122.1 8.1 131 15-156 26-160 (549)
71 2xwt_C Thyrotropin receptor; s 99.5 2.7E-14 9.3E-19 107.5 9.6 129 15-156 31-168 (239)
72 3o53_A Protein LRIM1, AGAP0063 99.5 1.1E-14 3.9E-19 114.1 7.8 132 13-158 118-251 (317)
73 4g8a_A TOLL-like receptor 4; l 99.5 2.3E-14 7.7E-19 121.2 10.1 112 11-124 72-187 (635)
74 1wwl_A Monocyte differentiatio 99.5 4.3E-14 1.5E-18 110.6 10.7 137 13-158 93-242 (312)
75 2z63_A TOLL-like receptor 4, v 99.5 4.9E-14 1.7E-18 118.1 11.8 134 10-155 47-188 (570)
76 2z7x_B TOLL-like receptor 1, v 99.5 5.5E-14 1.9E-18 116.9 11.9 136 11-160 344-484 (520)
77 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 99.2 12.1 109 14-124 27-138 (177)
78 1ziw_A TOLL-like receptor 3; i 99.5 3E-14 1E-18 122.0 10.2 138 11-160 45-187 (680)
79 3o6n_A APL1; leucine-rich repe 99.5 8.5E-14 2.9E-18 111.9 12.2 112 11-124 65-179 (390)
80 1xku_A Decorin; proteoglycan, 99.5 9.5E-14 3.2E-18 109.3 12.1 134 12-158 142-277 (330)
81 3t6q_A CD180 antigen; protein- 99.5 3.5E-14 1.2E-18 120.1 10.3 107 16-124 34-143 (606)
82 3j0a_A TOLL-like receptor 5; m 99.5 6E-14 2.1E-18 123.3 11.7 134 14-158 23-162 (844)
83 4ecn_A Leucine-rich repeat pro 99.5 8.4E-14 2.9E-18 122.4 12.4 131 14-156 672-818 (876)
84 3oja_B Anopheles plasmodium-re 99.5 6.1E-14 2.1E-18 118.9 11.0 132 13-156 49-183 (597)
85 3v47_A TOLL-like receptor 5B a 99.5 9E-14 3.1E-18 113.6 11.2 135 15-160 30-170 (455)
86 1m9s_A Internalin B; cell inva 99.5 1.8E-13 6.3E-18 116.2 13.4 131 8-157 58-188 (605)
87 1ziw_A TOLL-like receptor 3; i 99.5 1.7E-13 5.7E-18 117.4 13.1 133 15-159 25-160 (680)
88 1xku_A Decorin; proteoglycan, 99.5 2.8E-13 9.6E-18 106.5 13.3 129 15-155 52-182 (330)
89 3oja_B Anopheles plasmodium-re 99.5 1.4E-13 4.6E-18 116.7 12.2 112 11-124 71-185 (597)
90 3oja_A Leucine-rich immune mol 99.5 3.9E-14 1.3E-18 117.4 8.4 130 14-157 119-250 (487)
91 4eco_A Uncharacterized protein 99.5 2.3E-14 7.9E-19 122.4 7.0 143 11-157 202-390 (636)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.7E-13 5.8E-18 115.2 12.2 135 12-160 374-513 (562)
93 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 98.6 10.1 103 17-124 11-116 (170)
94 4fmz_A Internalin; leucine ric 99.5 6.2E-13 2.1E-17 105.1 14.6 110 38-160 218-327 (347)
95 3t6q_A CD180 antigen; protein- 99.5 1.7E-13 5.9E-18 115.8 12.1 136 10-157 52-192 (606)
96 3o53_A Protein LRIM1, AGAP0063 99.5 3.5E-14 1.2E-18 111.4 7.3 130 11-152 140-270 (317)
97 2r9u_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 98.7 10.3 103 17-124 14-119 (174)
98 2je0_A Acidic leucine-rich nuc 99.5 2.6E-14 8.9E-19 100.0 5.8 112 39-160 15-129 (149)
99 4fmz_A Internalin; leucine ric 99.5 5.6E-13 1.9E-17 105.3 13.9 128 11-156 62-189 (347)
100 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.8E-19 102.9 5.6 111 9-123 35-153 (176)
101 4ecn_A Leucine-rich repeat pro 99.5 2.7E-14 9.2E-19 125.6 6.4 111 11-123 444-586 (876)
102 2ft3_A Biglycan; proteoglycan, 99.5 3.1E-13 1.1E-17 106.4 11.4 105 15-123 54-160 (332)
103 1m9s_A Internalin B; cell inva 99.5 2.9E-13 9.8E-18 115.0 11.8 131 8-157 80-210 (605)
104 3j0a_A TOLL-like receptor 5; m 99.5 3.7E-13 1.3E-17 118.3 12.1 114 10-124 43-162 (844)
105 4glp_A Monocyte differentiatio 99.5 3.6E-14 1.2E-18 110.9 4.7 132 12-158 142-286 (310)
106 2ft3_A Biglycan; proteoglycan, 99.5 3.2E-13 1.1E-17 106.4 10.2 108 10-122 73-184 (332)
107 1o6v_A Internalin A; bacterial 99.5 8.9E-13 3.1E-17 108.4 13.1 104 12-122 218-321 (466)
108 3oja_A Leucine-rich immune mol 99.4 1.4E-13 4.8E-18 114.1 7.7 129 11-151 140-269 (487)
109 1dce_A Protein (RAB geranylger 99.4 1.8E-13 6.2E-18 115.4 8.4 108 42-160 442-549 (567)
110 1o6v_A Internalin A; bacterial 99.4 9.4E-13 3.2E-17 108.3 12.3 83 12-100 65-147 (466)
111 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4.1E-20 112.0 -4.9 108 11-123 44-153 (198)
112 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4.1E-20 112.0 -4.9 140 7-157 10-153 (198)
113 3bz5_A Internalin-J, INLJ; leu 99.4 6.1E-13 2.1E-17 109.4 10.1 105 10-124 37-141 (457)
114 1wwl_A Monocyte differentiatio 99.4 3.6E-13 1.2E-17 105.3 8.1 133 10-158 168-310 (312)
115 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 93.6 10.2 107 42-160 10-118 (170)
116 3bz5_A Internalin-J, INLJ; leu 99.4 2.7E-12 9.2E-17 105.6 12.3 104 8-122 57-160 (457)
117 4glp_A Monocyte differentiatio 99.4 1.1E-12 3.7E-17 102.5 9.1 106 15-122 91-209 (310)
118 2r9u_A Variable lymphocyte rec 99.4 2.6E-12 8.8E-17 92.5 10.3 106 43-160 14-121 (174)
119 2ast_B S-phase kinase-associat 99.4 1.2E-13 4.1E-18 108.6 2.1 108 11-120 89-205 (336)
120 3cvr_A Invasion plasmid antige 99.4 2.6E-12 8.7E-17 108.4 9.8 131 14-159 99-245 (571)
121 2ca6_A RAN GTPase-activating p 99.3 3.9E-12 1.3E-16 102.1 7.5 141 15-161 159-320 (386)
122 3cvr_A Invasion plasmid antige 99.3 7.8E-12 2.7E-16 105.4 9.4 100 13-124 138-244 (571)
123 2ast_B S-phase kinase-associat 99.3 9.1E-13 3.1E-17 103.6 3.4 108 12-121 115-233 (336)
124 1jl5_A Outer protein YOPM; leu 99.3 2.8E-11 9.5E-16 99.5 12.1 79 41-124 173-251 (454)
125 3g06_A SSPH2 (leucine-rich rep 99.3 4.1E-11 1.4E-15 102.0 12.9 95 15-124 61-155 (622)
126 2ifg_A High affinity nerve gro 99.3 1.9E-11 6.5E-16 96.7 9.9 103 18-124 11-117 (347)
127 3g06_A SSPH2 (leucine-rich rep 99.3 2.8E-11 9.6E-16 103.0 11.5 77 64-157 221-297 (622)
128 1jl5_A Outer protein YOPM; leu 99.3 4E-11 1.4E-15 98.6 11.3 131 15-157 111-250 (454)
129 2ca6_A RAN GTPase-activating p 99.2 6.3E-12 2.2E-16 100.9 5.5 109 12-122 91-228 (386)
130 3goz_A Leucine-rich repeat-con 99.2 1E-11 3.4E-16 99.1 6.4 116 6-123 12-151 (362)
131 4ay9_X Follicle-stimulating ho 99.2 2.1E-10 7.1E-15 91.0 10.7 143 15-159 30-217 (350)
132 2ifg_A High affinity nerve gro 99.1 2.1E-10 7.1E-15 90.7 9.8 104 44-159 11-118 (347)
133 3goz_A Leucine-rich repeat-con 99.1 4E-11 1.4E-15 95.6 5.5 110 12-123 47-180 (362)
134 1z7x_W Ribonuclease inhibitor; 99.0 1.5E-10 5.1E-15 94.6 3.4 69 83-157 337-411 (461)
135 1z7x_W Ribonuclease inhibitor; 99.0 2.1E-10 7.2E-15 93.7 4.0 109 12-122 167-296 (461)
136 4ay9_X Follicle-stimulating ho 99.0 2.3E-09 8E-14 84.9 8.8 111 12-124 101-216 (350)
137 3un9_A NLR family member X1; l 98.9 7.4E-10 2.5E-14 88.8 4.6 135 15-157 101-252 (372)
138 3un9_A NLR family member X1; l 98.8 1E-09 3.4E-14 88.0 2.2 138 13-158 70-225 (372)
139 3sb4_A Hypothetical leucine ri 98.8 9.8E-09 3.4E-13 80.6 6.8 128 14-156 100-309 (329)
140 3ogk_B Coronatine-insensitive 98.8 7.9E-09 2.7E-13 86.9 6.3 137 13-160 376-529 (592)
141 3sb4_A Hypothetical leucine ri 98.7 3.5E-08 1.2E-12 77.4 8.5 123 14-150 201-327 (329)
142 3ogk_B Coronatine-insensitive 98.6 4E-08 1.4E-12 82.6 6.1 67 13-79 162-235 (592)
143 1io0_A Tropomodulin; LRR prote 98.5 6.3E-08 2.2E-12 70.0 4.5 116 36-157 31-164 (185)
144 1io0_A Tropomodulin; LRR prote 98.5 3.6E-08 1.2E-12 71.3 3.1 111 11-123 32-164 (185)
145 2p1m_B Transport inhibitor res 98.5 9E-08 3.1E-12 80.4 4.2 131 14-156 371-518 (594)
146 2p1m_B Transport inhibitor res 98.4 1.2E-07 4.3E-12 79.5 2.4 84 38-121 102-195 (594)
147 2ra8_A Uncharacterized protein 98.4 1.2E-06 4E-11 70.0 7.8 64 86-155 251-318 (362)
148 3rw6_A Nuclear RNA export fact 98.3 4.3E-07 1.5E-11 69.4 4.2 85 62-150 168-257 (267)
149 3rw6_A Nuclear RNA export fact 98.2 2.2E-06 7.5E-11 65.5 5.9 77 39-116 168-257 (267)
150 2ra8_A Uncharacterized protein 98.1 3.1E-06 1.1E-10 67.5 5.0 86 39-124 217-321 (362)
151 4fdw_A Leucine rich hypothetic 97.8 6.1E-05 2.1E-09 60.8 8.4 76 17-96 159-235 (401)
152 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.6E-10 57.2 3.7 81 41-121 61-150 (176)
153 4fdw_A Leucine rich hypothetic 97.6 0.00029 9.9E-09 56.8 9.5 126 12-155 223-356 (401)
154 3e4g_A ATP synthase subunit S, 97.6 4.1E-05 1.4E-09 54.7 3.8 84 15-100 61-153 (176)
155 4gt6_A Cell surface protein; l 97.2 0.0024 8.4E-08 50.9 10.1 103 12-120 262-367 (394)
156 3rfe_A Platelet glycoprotein I 97.0 0.0012 4.1E-08 44.6 5.6 54 68-123 12-68 (130)
157 3rfe_A Platelet glycoprotein I 97.0 0.0014 4.9E-08 44.2 5.6 34 66-99 33-67 (130)
158 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0015 5.1E-08 47.4 5.7 114 38-154 38-167 (197)
159 4fs7_A Uncharacterized protein 96.8 0.0028 9.6E-08 50.6 7.0 101 12-120 273-376 (394)
160 4h09_A Hypothetical leucine ri 96.8 0.0077 2.6E-07 47.6 9.1 102 13-119 215-319 (379)
161 4gt6_A Cell surface protein; l 96.7 0.0051 1.7E-07 49.1 7.5 102 12-120 285-388 (394)
162 4h09_A Hypothetical leucine ri 96.6 0.025 8.7E-07 44.6 10.8 103 12-119 237-342 (379)
163 4fs7_A Uncharacterized protein 96.5 0.0094 3.2E-07 47.5 7.8 125 12-154 250-376 (394)
164 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0026 9E-08 46.1 3.2 108 12-121 38-168 (197)
165 2lz0_A Uncharacterized protein 30.8 44 0.0015 20.7 3.0 44 30-74 9-53 (100)
No 1
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.5e-17 Score=123.77 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=117.0
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcc-cCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L 92 (192)
++|+.|++++|.+ ..+....+..+++|+.|++++|.+..+|.. +..+++|++|++++|+++.+|+. +..+++|+.|
T Consensus 40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 7899999999998 677677788999999999999999988755 68999999999999999977765 6889999999
Q ss_pred EccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCC
Q 047078 93 DLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGP 159 (192)
Q Consensus 93 ~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 159 (192)
++++|.++.+|..+..+++|++|++++|.+... +. ..+..+++|+.+++..|...+.
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~---~~-------~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSI---PH-------GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC---CT-------TTTTTCTTCCEEECTTSCBCTT
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCcc---CH-------HHHhCCCCCCEEEeeCCCccCC
Confidence 999999999999999999999999999988853 21 3457889999999999987764
No 2
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.2e-16 Score=121.47 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=107.5
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCcc-cCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~ 88 (192)
...+++|++|++++|.+ ..+....+..+++|++|++++|.++.+| ..+..+++|++|++++|+++.+|+. +..+++
T Consensus 55 ~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 45678888888888887 6666666677888888888888888666 4467888888888888888876664 577888
Q ss_pred CCEEEccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCcc
Q 047078 89 LEILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPGC 161 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 161 (192)
|+.|++++|.++.+|. .+..+++|++|++++|.+.+. + +..+..+++|+.+++..|...+..|
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-------~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---P-------HGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---C-------TTTTTTCTTCCEEECCSCCBCTTST
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc---C-------HHHHhCCCCCCEEEeeCCceeCCcc
Confidence 8888888888887776 477888888888888887742 2 2345778899999999998877644
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=8.9e-17 Score=120.11 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=116.0
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcc-cCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L 92 (192)
++++.|++.+|.+ ..+....+..+++|+.|++++|.++.+ |..+..+++|++|++++|+++.+|+. |..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 6799999999998 777777788999999999999999955 67899999999999999999988875 6789999999
Q ss_pred EccCCCCccC-ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 93 DLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 93 ~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++++|.++.+ |..+..+++|++|++++|.+... + +..+..+++|+.+++..|...+.-
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-------~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI---A-------KGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---C-------TTTTTTCTTCCEEECCSSCEECSG
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE---C-------HHHHhCCCCCCEEEeCCCCcCCCC
Confidence 9999999966 45688999999999999998853 2 234577899999999999887643
No 4
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=5.5e-17 Score=137.20 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=116.5
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L 92 (192)
++++.|++++|.+ ..++...+.++++|++|++++|.|+.+|+ .|..+++|++|++++|+++.+|+ .|..+++|+.|
T Consensus 52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 3689999999998 78888888999999999999999998765 58999999999999999998886 57999999999
Q ss_pred EccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 93 DLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 93 ~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++++|.++.+|.. ++++++|++|++++|.+... . .|..+..++.|++|++..|......
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-~--------~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-K--------LPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-C--------CCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccC-C--------CchhhccchhhhhhcccCccccccc
Confidence 9999999988764 78999999999999988754 2 3345678899999999888765443
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=9.6e-17 Score=126.77 Aligned_cols=149 Identities=21% Similarity=0.210 Sum_probs=91.9
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCC---------CCCccEEEeecCCCcccC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGN---------LFNLHYLSVKNTNVKKIP 80 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~---------l~~L~~L~l~~n~~~~lp 80 (192)
...+++|++|++++|.+ ..++. .+..+++|++|++++|.+. .+|..++. +++|++|++++|.++.+|
T Consensus 123 ~~~l~~L~~L~Ls~n~l--~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 199 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPL--RALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199 (328)
T ss_dssp GGGGTTCSEEEEESCCC--CCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC
T ss_pred HhccCCCCEEECCCCcc--ccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch
Confidence 35667777777777776 33332 3456677777777775433 56655443 667777777777766666
Q ss_pred cccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChh----------------HHHhhHHHhhccc
Q 047078 81 KSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGE----------------AAAKLHEFIDVFV 144 (192)
Q Consensus 81 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~~~~~~~l~ 144 (192)
..++.+++|+.|++++|.++.+|..++.+++|++|++++|++.+. +|.. ....+|..+..++
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 666667777777777777766666666677777777776655431 1110 0112445566777
Q ss_pred ccceeecCCCCCCCCccchh
Q 047078 145 EFHDFLDPANGKFGPGCLRI 164 (192)
Q Consensus 145 ~L~~l~~~~~~~~~~~~l~~ 164 (192)
+|+.|++..|......+-.+
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGG
T ss_pred CCCEEeCCCCCchhhccHHH
Confidence 77777777766555544444
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=4.1e-17 Score=128.87 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=93.8
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCc-ccCcccCC----
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGN---- 85 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~---- 85 (192)
+..+++|+.|++.+|.+ ..++ ..+..+++|++|++++|.+..+|..++.+++|++|++++|++. .+|..++.
T Consensus 100 l~~l~~L~~L~L~~n~l--~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGL--MELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GGGGTTCSEEEEESSCC--CCCC-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhCCCCCEEECCCCCc--cchh-HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 34577788888888876 3333 3346778888888888888877777888888888888887644 67766554
Q ss_pred -----CCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 86 -----LLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 86 -----l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
+++|+.|++++|.++.+|.+++++++|++|++++|.+.+ ++ ..+..+++|++|++..|.
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~---l~--------~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA---LG--------PAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC---CC--------GGGGGCTTCCEEECTTCT
T ss_pred hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc---Cc--------hhhccCCCCCEEECcCCc
Confidence 788888888888888888888888888888888887764 22 234555556666555544
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=6.7e-16 Score=118.70 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=71.2
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcc-cCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKS-IGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~ 88 (192)
...+++|++|++.+|.+ ..+....+..+++|++|++++|.++.+|+. +..+++|++|++++|.++.+|+. +..+++
T Consensus 81 l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp GTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCCcc--CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 34445555555555554 344444444555555555555555544332 44555555555555555544332 345555
Q ss_pred CCEEEccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 89 LEILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
|+.|++++|.++.+|.. +..+++|++|++++|.+.+. .+..+..+++|+.+++..|...+
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV----------PDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC----------CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc----------CHHHHhCCcCCCEEEccCCCccc
Confidence 55555555555544433 34555555555555555431 12334667778888877776554
No 8
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=5.3e-16 Score=113.80 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=93.9
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCc-ccCcccCCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGLE 90 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~L~ 90 (192)
.++++|+.|++.+|.+ ..++ .+..+++|++|++++|.+..+ +.+..+++|++|++++|.++ ..|..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i--~~l~--~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINV--TDLT--GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCC--SCCT--TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCc--cChH--HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4567788888888876 4444 246778888888888866554 36777888888888888877 4677777888888
Q ss_pred EEEccCCCCc-cCChhhcCCCCCcEEEccccc-cCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 91 ILDLKNSLVR-ELPVEIRNLKKLRYLMVYKYN-YTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 91 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
.|++++|.++ ..|..+..+++|++|++++|. +... + .+..+++|+.|++..+....
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-----------~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-----------M-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-----------G-GGGGCSSCCEEECTTBCCCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-----------H-hhcCCCCCCEEECCCCCCcC
Confidence 8888888877 466677788888888888886 4431 1 34667778888777776554
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=116.54 Aligned_cols=134 Identities=11% Similarity=0.115 Sum_probs=112.7
Q ss_pred CcccEEEEeccCCCCCcc-chhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCc-ccCCCCCCCE
Q 047078 15 SKVRSVFLFNVDKLPDSF-MNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEI 91 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~ 91 (192)
+.++.|++++|.+ ..+ +...+..+++|+.|++++|.++.+++ .+..+++|++|++++|.++.+++ .+..+++|+.
T Consensus 32 ~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 32 QYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp TTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 4578999999998 555 33557889999999999999997664 68999999999999999997666 5889999999
Q ss_pred EEccCCCCccC-ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 92 LDLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 92 L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
|++++|.++.+ |..+..+++|++|++++|.+.+. .|..+..+++|+.+++..|...+..
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV----------APGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB----------CTTTTTTCTTCCEEECCSCCEECSG
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE----------CHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999999966 56788999999999999998853 2355678899999999999887654
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=8.9e-16 Score=113.35 Aligned_cols=133 Identities=19% Similarity=0.265 Sum_probs=113.2
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcc-cCCCCCCCE
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEI 91 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~ 91 (192)
.++++.|++.+|.+ ..+....+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+|+. +..+++|+.
T Consensus 27 ~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 46799999999998 677777778999999999999999987755 68899999999999999977764 689999999
Q ss_pred EEccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 92 LDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 92 L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
|++++|.++.+|.. +.++++|++|++++|.+.+. +. ..+..+++|+.+++..|...+
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~-------~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV---PD-------GVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---CT-------TTTTTCTTCCEEECCSCCBCC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee---CH-------HHhccCCCccEEEecCCCeec
Confidence 99999999987775 67899999999999988752 21 335778999999999987654
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=9.4e-16 Score=117.71 Aligned_cols=110 Identities=23% Similarity=0.360 Sum_probs=60.2
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
..+++|++|++.+|.+ ..++..++.++++|++|++++|.+..+|.. +..+++|++|++++|.++.+++ .+..+++|
T Consensus 58 ~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 4555666666666665 445555555566666666666665544432 4555556666666555554333 34555555
Q ss_pred CEEEccCCCCccCChh-hcCCCCCcEEEccccccC
Q 047078 90 EILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~ 123 (192)
+.|++++|.++.+|.. +..+++|+.|++++|.+.
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 5555555555544443 345555555555555544
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=8.9e-16 Score=116.65 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=114.2
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L 92 (192)
++++.|++.+|.+ ..+....+.++++|++|++++|.++.++ ..+..+++|++|++++|+++.+|+ .+..+++|+.|
T Consensus 35 ~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 5799999999998 7777777889999999999999999665 458899999999999999997765 57899999999
Q ss_pred EccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 93 DLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 93 ~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++++|.++.+|.. +..+++|+.|++++|.+... + +..+..+++|+.|++..|......
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~-------~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI---P-------AGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---C-------TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCcc---C-------HHHcCcCcCCCEEECCCCcCCccC
Confidence 9999999988876 57899999999999988753 2 234678899999999998755443
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.7e-15 Score=117.03 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=68.9
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc-ccCCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLE 90 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~ 90 (192)
.+++|++|++.+|.+ ..+....+..+++|++|++++|.+..+|.. +..+++|++|++++|+++.+|. .+..+++|+
T Consensus 103 ~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCcCCCEEECCCCcC--CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 344444444444443 333333334445555555555554443322 4445555555555555544433 244455555
Q ss_pred EEEccCCCCccC-ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 91 ILDLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 91 ~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
.|++++|.++.+ |..+.++++|+.|++++|.+.+. .+..+..+++|+.+++..|...+..
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL----------PTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC----------CHHHHTTCTTCCEEECCSSCEECSG
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcC----------CHHHcccCcccCEEeccCCCccCCC
Confidence 555555555422 44445555555555555544431 2244677788888888888766543
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.1e-15 Score=115.73 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=117.8
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCcc-cCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L 89 (192)
..+++|++|++.+|.+ ..++...+..+++|++|++++|.++.+|. .+..+++|++|++++|.++.+|.. +..+++|
T Consensus 82 ~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 82 KELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp SSCTTCCEEECCSSCC--CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcC--CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 5689999999999998 77777778899999999999999997764 478999999999999999977765 7899999
Q ss_pred CEEEccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 90 EILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
+.|++++|.++.+|.. +.++++|++|++++|.+... +. ..+..+++|+.+++..|...+.-
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~-------~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV---PE-------GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC---CT-------TTTTTCTTCCEEECCSSCBCCSS
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC---CH-------HHhccccCCCEEEecCCCeeCCC
Confidence 9999999999987765 77899999999999988742 22 33567899999999999877643
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1e-15 Score=118.96 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=84.6
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
...+++|+.|++.+|.+ ..+... ..+++|++|++++|.+..+|..+..+++|++|++++|+++.+|+ .|..+++|
T Consensus 51 ~~~l~~L~~L~L~~n~l--~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAEL--TKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp GTTCTTCCEEECTTSCC--CEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred hhcCCCCCEEECCCCcc--CcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 34556666666666665 333221 45666666666666666666666667777777777777775553 46667777
Q ss_pred CEEEccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 90 EILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
+.|++++|.++.+|.+ +..+++|+.|++++|++.. ++. ..+..+++|+.|++..|...
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~-------~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE---LPA-------GLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC---CCT-------TTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc---cCH-------HHhcCcCCCCEEECCCCcCC
Confidence 7777777777766654 3466777777777776653 221 23456788888888877654
No 16
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=5.7e-16 Score=111.69 Aligned_cols=136 Identities=20% Similarity=0.145 Sum_probs=111.0
Q ss_pred hhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCccc-CCCC
Q 047078 9 LESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSI-GNLL 87 (192)
Q Consensus 9 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~-~~l~ 87 (192)
+....+++|+.|++.+|.+ ..+ ..+....++|++|++++|.++.+ +.+..+++|++|++++|+++.+|+.+ ..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l--~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI--PVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCC--CSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCC--chh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3456788999999999998 444 33333445999999999999977 67899999999999999999888765 8899
Q ss_pred CCCEEEccCCCCccCCh--hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 88 GLEILDLKNSLVRELPV--EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
+|+.|++++|.++.+|. .+..+++|+.|++++|.+.. ++.. ....+..+++|+.++...+.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~---~~~~----~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN---KKHY----RLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG---STTH----HHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC---cHhH----HHHHHHHCCccceeCCCcCC
Confidence 99999999999999887 78899999999999998874 3321 11236788999999876665
No 17
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=9e-16 Score=109.65 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=111.0
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcc-cCcccCCCCCCCE
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKK-IPKSIGNLLGLEI 91 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~-lp~~~~~l~~L~~ 91 (192)
..++|+.|++.+|.+....++ ..+..+++|++|++++|.++.+ ..+..+++|++|++++|+++. +|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 457899999999997111343 3457889999999999999977 778999999999999999995 7777777999999
Q ss_pred EEccCCCCccCC--hhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 92 LDLKNSLVRELP--VEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 92 L~l~~n~l~~lp--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
|++++|.++.+| ..+..+++|++|++++|.+... +.. ....+..+++|+.|++..+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~---~~~----~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL---NDY----RESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS---TTH----HHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch---HHH----HHHHHHhCccCcEecCCCCChh
Confidence 999999999876 6788999999999999988753 210 1135678999999988877644
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=1.4e-15 Score=117.50 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=83.5
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCC-CCcC-CcccCCCCCccEEEeecCCCccc-CcccCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYL-PEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLL 87 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~l-p~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~ 87 (192)
...+++|+.|++.+|.+ ..+....+.++++|++|++++|. +..+ |..+..+++|++|++++|.++.+ |..+..++
T Consensus 52 ~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 34566677777777665 44444555566666666666665 5544 34566666666666666666643 33455666
Q ss_pred CCCEEEccCCCCccCChh-hcCCCCCcEEEccccccCCCcc--CC---h---------hHHHhhHHHhhcccccceeecC
Q 047078 88 GLEILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGAT--LA---G---------EAAAKLHEFIDVFVEFHDFLDP 152 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~--~~---~---------~~~~~~~~~~~~l~~L~~l~~~ 152 (192)
+|+.|++++|.++.+|.. +.++++|+.|++++|.+..... +. . .+....+..+..+++|+.|++.
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 666666666666655543 5566666666666665543110 00 0 0000124455667777777777
Q ss_pred CCCCCC
Q 047078 153 ANGKFG 158 (192)
Q Consensus 153 ~~~~~~ 158 (192)
.|....
T Consensus 210 ~n~l~~ 215 (285)
T 1ozn_A 210 ANNLSA 215 (285)
T ss_dssp SSCCSC
T ss_pred CCcCCc
Confidence 776544
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=2.2e-15 Score=115.86 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=113.7
Q ss_pred hhhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcc-cC
Q 047078 7 GALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKS-IG 84 (192)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~-~~ 84 (192)
+++....+++|+.|++.+|.+ ..+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+|+. +.
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~l--~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNKL--HDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSCC--CCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccccccCCCCcEEECCCCCC--CCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc
Confidence 345577899999999999997 443 2457899999999999999977654 68899999999999999976664 78
Q ss_pred CCCCCCEEEccCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 85 NLLGLEILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 85 ~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
.+++|+.|++++|.++.+|.. +.++++|+.|++++|.+.+. + +..+..+++|+.|++..|......
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-------~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL---P-------EGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---C-------TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc---C-------HHHhcCCccCCEEECCCCcCCccC
Confidence 899999999999999977765 57899999999999988752 2 233578899999999988755443
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=1.5e-15 Score=128.53 Aligned_cols=133 Identities=19% Similarity=0.171 Sum_probs=95.5
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCccc-CcccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~~L 92 (192)
+++++|++++|.+ ..+....+.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..|+.+++|+.|
T Consensus 32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 5677888888876 666666667778888888888877755 45577788888888888877754 6677778888888
Q ss_pred EccCCCCccCC-hhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 93 DLKNSLVRELP-VEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 93 ~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
++++|.++.+| ..++++++|++|++++|.+.+. + +|..+.++++|++|++..+....
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~--------lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-K--------LPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-C--------CCGGGGTCTTCCEEECCSSCCCE
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccce-e--------chHhHhhcCCCCEEEccCCccee
Confidence 88888777555 4577778888888888776642 1 23456677777777777765443
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.2e-15 Score=112.69 Aligned_cols=112 Identities=18% Similarity=0.331 Sum_probs=99.7
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcc-cCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKS-IGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~ 88 (192)
...+++|++|++.+|.+ ..++...+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|+. +..+++
T Consensus 48 ~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 46789999999999998 677777778999999999999999977755 68999999999999999977765 788999
Q ss_pred CCEEEccCCCCccCChh-hcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 99999999999988776 6789999999999998764
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=5.5e-16 Score=108.67 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=104.7
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcc-cCcccCCCCCCCE
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKK-IPKSIGNLLGLEI 91 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~-lp~~~~~l~~L~~ 91 (192)
..++++.|++.+|.+....++ ..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 457899999999997111333 3557889999999999999877 678999999999999999995 7777778999999
Q ss_pred EEccCCCCccCC--hhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecC
Q 047078 92 LDLKNSLVRELP--VEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDP 152 (192)
Q Consensus 92 L~l~~n~l~~lp--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 152 (192)
|++++|.++.+| ..+..+++|++|++++|.+.+. +. .....+..+++|+.+++.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~----~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL---ND----YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS---TT----HHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch---HH----HHHHHHHHCCCcccccCC
Confidence 999999999765 7789999999999999988753 21 011356778888888653
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=3.5e-15 Score=114.68 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=94.0
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccC-cccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIP-KSIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp-~~~~~l~~L~~L 92 (192)
+++++|++++|.+ ..+....+.++++|++|++++|.+..++ ..+..+++|++|++++|+++.++ ..+..+++|+.|
T Consensus 28 ~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 3577888888876 5555556677788888888888777555 35777788888888888877544 467777888888
Q ss_pred EccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 93 DLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 93 ~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
++++|.++.++. .+.++++|++|++++|.+... . +|..+..+++|++|+++.|....
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--------l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-K--------LPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-C--------CCGGGGGCTTCCEEECCSSCCCE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee-c--------CchhhccCCCCCEEECCCCCCCc
Confidence 888887776555 467777888888888777642 1 23445667777777777776544
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=6.5e-15 Score=107.95 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=113.1
Q ss_pred hhhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccC
Q 047078 7 GALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIG 84 (192)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~ 84 (192)
+++....+++|++|++.+|.+ .... .+..+++|++|++++|.++ ..|..+..+++|++|++++|.++ ..|..+.
T Consensus 58 ~l~~l~~l~~L~~L~l~~n~~--~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~ 133 (197)
T 4ezg_A 58 DLTGIEYAHNIKDLTINNIHA--TNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133 (197)
T ss_dssp CCTTGGGCTTCSEEEEESCCC--SCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred ChHHHhcCCCCCEEEccCCCC--Ccch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence 345677899999999999986 3332 4578999999999999999 47788999999999999999999 5778899
Q ss_pred CCCCCCEEEccCCC-CccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 85 NLLGLEILDLKNSL-VRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 85 ~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
.+++|+.|++++|. ++.+| .+..+++|+.|++++|.+... + .+..+++|+.|++..|...
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~---~---------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY---R---------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC---T---------TGGGCSSCCEEEECBC---
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh---H---------HhccCCCCCEEEeeCcccC
Confidence 99999999999998 88887 689999999999999988753 1 3578899999999887643
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=5.7e-15 Score=114.71 Aligned_cols=135 Identities=19% Similarity=0.136 Sum_probs=110.6
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCcc-cCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~ 88 (192)
...+++|++|++++|.+ ..++. .+..+++|++|++++|.++.+| ..+..+++|++|++++|+++.+|+. +..+++
T Consensus 73 ~~~l~~L~~L~Ls~N~l--~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQL--QSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp CSCCTTCCEEECCSSCC--SSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCCcCCEEECCCCcC--CcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 36788999999999997 44443 4568899999999999999776 5588999999999999999977764 678899
Q ss_pred CCEEEccCCCCccCChhh-cCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCC
Q 047078 89 LEILDLKNSLVRELPVEI-RNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGP 159 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 159 (192)
|+.|++++|.++.+|.++ ..+++|+.|++++|++.. +| ..+.....|+.+++..|...+.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---ip--------~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT---IP--------KGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC---CC--------TTTTTTCCCSEEECCSCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc---cC--------hhhcccccCCeEEeCCCCccCc
Confidence 999999999999888764 578999999999998873 33 3445667899999999988775
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.3e-15 Score=110.10 Aligned_cols=107 Identities=14% Similarity=0.242 Sum_probs=54.4
Q ss_pred cccEEEEeccCCCCCccchh-hhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEE
Q 047078 16 KVRSVFLFNVDKLPDSFMNA-SIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEIL 92 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L 92 (192)
++++|++.+|.+ ..+... .+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+++ .+..+++|+.|
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 455555555554 333322 244555555555555555533 3445555555555555555553333 34555555555
Q ss_pred EccCCCCc-cCChhhcCCCCCcEEEccccccCC
Q 047078 93 DLKNSLVR-ELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 93 ~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
++++|.++ ..|..+..+++|++|++++|.+..
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55555555 224445555555555555555543
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=4.2e-16 Score=122.27 Aligned_cols=111 Identities=13% Similarity=0.193 Sum_probs=62.6
Q ss_pred hhCCCcccEEEEec-cCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCC
Q 047078 11 SIKHSKVRSVFLFN-VDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLL 87 (192)
Q Consensus 11 ~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~ 87 (192)
...+++|++|++.+ |.+ .......+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..++
T Consensus 72 l~~l~~L~~L~L~~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGCTTCSEEEEEEETTE--ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HhCCCCCCeeeCCCCCcc--cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 34555566666653 443 2222333345566666666666655 55555556666666666666655 5555555666
Q ss_pred CCCEEEccCCCCc-cCChhhcCCC-CCcEEEccccccC
Q 047078 88 GLEILDLKNSLVR-ELPVEIRNLK-KLRYLMVYKYNYT 123 (192)
Q Consensus 88 ~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~~~ 123 (192)
+|+.|++++|.++ .+|..++.++ +|++|++++|.+.
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 6666666666655 5555565555 5666666665554
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=3.2e-15 Score=130.12 Aligned_cols=110 Identities=26% Similarity=0.392 Sum_probs=71.0
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~L 89 (192)
..+++|+.|++.+|.+ .......+..+++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|..++.+++|
T Consensus 439 ~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hcCCCCCEEECCCCcc--cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 4455666666666655 3233334455666666777666666 55666666677777777777766 666666667777
Q ss_pred CEEEccCCCCc-cCChhhcCCCCCcEEEccccccC
Q 047078 90 EILDLKNSLVR-ELPVEIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 90 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~ 123 (192)
+.|++++|.++ .+|..++++++|+.|++++|++.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 77777777666 66666667777777777766654
No 29
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=4.7e-15 Score=111.32 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=102.1
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcccCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKSIGNLLGL 89 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L 89 (192)
...+++|+.|++.+|.+ ..++...+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+|..+..+++|
T Consensus 60 ~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137 (229)
T ss_dssp TTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTC
T ss_pred hhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCC
Confidence 46789999999999998 777777888999999999999999987755 688999999999999999999999999999
Q ss_pred CEEEccCCCCccCChh-hcCCCCCcEEEccccccCC
Q 047078 90 EILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~ 124 (192)
+.|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999999988764 7789999999999998875
No 30
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=8.6e-16 Score=133.00 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=95.9
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLE 90 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~ 90 (192)
...+++|+.|++++|.+ ..++..++ .+++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++.+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 45678899999999987 56665554 7889999999999999888889999999999999999998898999999999
Q ss_pred EEEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 91 ILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
.|+|++|.++.+|.+++++++|+.|++++|.+.+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 9999999999999889999999999999998875
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=1.4e-14 Score=113.39 Aligned_cols=109 Identities=15% Similarity=0.266 Sum_probs=64.1
Q ss_pred hhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCC
Q 047078 9 LESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLG 88 (192)
Q Consensus 9 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~ 88 (192)
+....+++|+.|++++|.+ ..+.. +..+++|++|++++|.+..++ .+..+++|++|++++|+++.++. +..+++
T Consensus 57 ~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 130 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSN 130 (308)
T ss_dssp TTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTT
T ss_pred hhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCC
Confidence 3445566666666666665 33333 456666666666666666543 45566666666666666665443 555666
Q ss_pred CCEEEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++.++. +..+++|++|++++|.+..
T Consensus 131 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC
Confidence 6666666666655543 5555666666666665543
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=2.1e-15 Score=118.23 Aligned_cols=112 Identities=15% Similarity=0.301 Sum_probs=93.0
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~ 87 (192)
....+++|++|++.+|.+ .......+..+++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|..++.++
T Consensus 96 ~l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp GGGGCTTCSEEEEEEECC--EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred hHhcCCCCCEEECcCCee--CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 356789999999999997 4345556678899999999999988 78888899999999999999998 8888888887
Q ss_pred -CCCEEEccCCCCc-cCChhhcCCCCCcEEEccccccCC
Q 047078 88 -GLEILDLKNSLVR-ELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 88 -~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
.|+.|++++|.++ .+|..+..++ |+.|++++|.+.+
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 8999999998887 7777777776 8888888877654
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=1.5e-14 Score=118.20 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=116.0
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCccc-CcccCCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLE 90 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~ 90 (192)
..++|+.|++.+|.+ .......+..+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+ |..+..+++|+
T Consensus 273 ~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 273 EASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp TTSCCCEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cccCceEEEecCccc--cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 347899999999998 666677778999999999999999955 56789999999999999999955 56789999999
Q ss_pred EEEccCCCCccC-ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 91 ILDLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 91 ~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
.|++++|.++.+ |..+..+++|++|++++|++.+. +. ..+..+++|+.+++..|...+..
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~-------~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV---PD-------GIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC---CT-------TTTTTCTTCCEEECCSSCBCCCT
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccC---CH-------hHhccCCcccEEEccCCCcccCC
Confidence 999999999955 77889999999999999998852 22 33578899999999999887654
No 34
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=7.4e-15 Score=123.87 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEcc
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLK 95 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~ 95 (192)
.|+.|++++|.+ ..++. +..+++|+.|++++|.++.+|..++.+++|++|++++|+++.+| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l--~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCC--CCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 477777877776 44443 56777788888888877777777777888888888888777766 77777788888888
Q ss_pred CCCCccC--ChhhcCCCCCcEEEccccccCC
Q 047078 96 NSLVREL--PVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 96 ~n~l~~l--p~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+|.++.+ |..++.+++|+.|++++|++.+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 8777765 6777777888888888877764
No 35
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=8.3e-15 Score=112.24 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=58.9
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCE
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEI 91 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~ 91 (192)
..+++|+.|++++|.+ ..+.. +..+++|+.|++++|.++.+|.... .+|++|++++|+++.++ .+..+++|+.
T Consensus 60 ~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEI 132 (263)
T ss_dssp GGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCE
T ss_pred hhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccE
Confidence 3444444444444444 22222 3444444444444444444432211 44445555555444432 3445555555
Q ss_pred EEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 92 LDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 92 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
|++++|.++.+| .+..+++|+.|++++|.+.+. ..+..+++|+.+++..|.
T Consensus 133 L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~------------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 133 LSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT------------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC------------TTSTTCCCCCEEEEEEEE
T ss_pred EECCCCcCCCCh-HHccCCCCCEEECCCCcCcch------------HHhccCCCCCEEeCCCCc
Confidence 555555555443 345555555555555555432 223455566666555544
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=1e-14 Score=116.51 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=50.3
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCccc-CcccCCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLE 90 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~ 90 (192)
.+++|+.|++++|.+ ..+....+.++++|+.|++++|.++.+|. .+..+.+|++|++++|+++.+ |..|..+++|+
T Consensus 62 ~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 62 RLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 344445555554444 33333344444555555555555443332 244445555555555554432 23444455555
Q ss_pred EEEccCCCCccCChhh----cCCCCCcEEEccccccC
Q 047078 91 ILDLKNSLVRELPVEI----RNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l----~~l~~L~~L~l~~n~~~ 123 (192)
.|++++|.++.+|..+ ..+++|+.|++++|.+.
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp EEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred EEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5555555555444433 23445555555555444
No 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=8.9e-15 Score=109.20 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=100.7
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCccc-CcccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKI-PKSIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~ 88 (192)
...+++|+.|++.+|.+ ..+....+.++++|++|++++|.++.+|.. +..+++|++|++++|+++.+ |..+..+++
T Consensus 53 ~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCcC--CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 46789999999999998 777777888999999999999999977654 88999999999999999955 668899999
Q ss_pred CCEEEccCCCCccC-ChhhcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++.+ |..+..+++|+.|++++|.+..
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99999999999966 6678899999999999999875
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=2e-14 Score=111.61 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=74.3
Q ss_pred hhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCC
Q 047078 9 LESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLG 88 (192)
Q Consensus 9 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~ 88 (192)
+....+++|++|++++|.+ ..+.. +..+++|++|++++|.++.+|. +..+++|++|++++|+++.+ +.+..+++
T Consensus 62 ~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~ 135 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQ 135 (291)
T ss_dssp TTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTT
T ss_pred hhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCC
Confidence 3345566666666666665 33333 4556666666666666655432 56666666666666666554 34555666
Q ss_pred CCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 89 LEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
|+.|++++|.++.+ ..+..+++|+.|++++|.+.+.. . +..+++|+.|+++.|...
T Consensus 136 L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~-----------~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 136 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-----------P-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-----------G-GTTCTTCCEEECCSSCCC
T ss_pred CCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch-----------h-hcCCCccCEEECCCCcCC
Confidence 66666666666655 34556666666666666555321 1 355566666666655443
No 39
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.2e-14 Score=111.40 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=112.3
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLL 87 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~ 87 (192)
++....+++|+.|++.+|.+ ..+. .+..+++|+.|++++|.++.+|. +..+++|++|++++|+++.+|.... +
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i--~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~ 106 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNI--QSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--A 106 (263)
T ss_dssp EECHHHHTTCSEEECTTSCC--CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred ccchhhcCcCcEEECcCCCc--ccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--C
Confidence 33467789999999999998 5554 45789999999999999998877 8999999999999999998876443 9
Q ss_pred CCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCC
Q 047078 88 GLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGP 159 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 159 (192)
+|+.|++++|.++.+| .+..+++|+.|++++|++.+. ..+..+++|+.|++..|.....
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~------------~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI------------VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC------------GGGGGCTTCCEEECTTSCCCBC
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC------------hHHccCCCCCEEECCCCcCcch
Confidence 9999999999999886 588999999999999998753 1357889999999999876544
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=1.4e-14 Score=111.31 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=100.2
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~ 87 (192)
....+++|++|++.+|.+ ..+....+.++++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..++
T Consensus 47 ~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence 456789999999999998 6777777889999999999999999665 668999999999999999996665 688999
Q ss_pred CCCEEEccCCCCcc--CChhhcCCCCCcEEEccccccCC
Q 047078 88 GLEILDLKNSLVRE--LPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 88 ~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+|+.|++++|.++. +|..+.++++|++|++++|.+.+
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 99999999999985 78899999999999999998875
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=119.43 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=80.9
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCcc-cCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L 92 (192)
++|++|++++|.+ ..++...+.++++|+.|++++|.++.++ ..+..+++|++|++++|+++.+|.. +..+++|+.|
T Consensus 52 ~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 4688888888887 6666666677888888888888887553 5577888888888888888877765 7778888888
Q ss_pred EccCCCCccCCh--hhcCCCCCcEEEccccc
Q 047078 93 DLKNSLVRELPV--EIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 93 ~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~ 121 (192)
++++|.++.+|. .+.++++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 888888887776 56678888888888774
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.3e-14 Score=108.35 Aligned_cols=113 Identities=15% Similarity=0.265 Sum_probs=100.4
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCccc-CcccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKI-PKSIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~l-p~~~~~l~ 87 (192)
....+++|+.|++++|.+ ..+....+.++++|++|++++|.++.+|.. +..+++|++|++++|+++.+ |..|..++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128 (220)
T ss_dssp SSTTCTTCCEEECCSSCC--CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhhCCCCCCEEECCCCcC--CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence 346789999999999998 777777788999999999999999988866 68899999999999999965 55789999
Q ss_pred CCCEEEccCCCCccCChh-hcCCCCCcEEEccccccCC
Q 047078 88 GLEILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~ 124 (192)
+|+.|++++|.++.+|.. +..+++|+.|++++|++..
T Consensus 129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999999999977765 7789999999999998864
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=8.6e-15 Score=120.08 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=59.4
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
..+++|+.|++++|.+ ..+....+.++++|++|++++|.++.+|.. +..+++|++|++++|.++.+|. .+..+++|
T Consensus 96 ~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 4566666666666665 455545555666666666666666655533 5556666666666666664443 34444444
Q ss_pred CEEEccCC-CCccCCh-hhcCCCCCcEEEccccccC
Q 047078 90 EILDLKNS-LVRELPV-EIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 90 ~~L~l~~n-~l~~lp~-~l~~l~~L~~L~l~~n~~~ 123 (192)
+.|++++| .++.+|. .+.++++|++|++++|.+.
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 44444442 2333333 2334455555555555444
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=121.54 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=93.4
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccC-cccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIP-KSIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp-~~~~~l~~L~~L 92 (192)
++++.|++++|.+ ..+....+.++++|++|++++|.+..++ ..+..+++|++|++++|+++.+| ..|..+++|+.|
T Consensus 28 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 4577788888876 5566666677788888888888777554 44777788888888888777554 467777788888
Q ss_pred EccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 93 DLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 93 ~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
++++|.++.+|. .++++++|++|++++|.+..+ + +|..+.++++|++|++..+....
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~--------lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-K--------LPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-C--------CCGGGGGCTTCCEEECTTSCCCE
T ss_pred cccccccccCCCccccccccccEEecCCCcccee-c--------ChhhhcccCCCCEEeCcCCccce
Confidence 888777776665 467777888888877776642 1 23445667777777777665443
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=2.3e-14 Score=114.48 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=110.7
Q ss_pred CcccEEEEeccCCCCCccchhhhc-CCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCCCE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIA-NFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEI 91 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~ 91 (192)
+.++.|++++|.+ ..+....+. ++++|+.|++++|.++.++ ..+..+++|++|++++|+++.+++ .|..+++|+.
T Consensus 39 ~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 4589999999998 777777776 8999999999999999776 558999999999999999997766 5889999999
Q ss_pred EEccCCCCccC-ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 92 LDLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 92 L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
|++++|.++.+ |..+..+++|+.|++++|.+.. ++... -..+..+++|+.|+++.|......
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~----~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR---FPVEL----IKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS---CCGGG----TC----CTTCCEEECCSSCCCCCC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCe---eCHHH----hcCcccCCcCCEEECCCCCCCccC
Confidence 99999999965 5578899999999999999885 33211 011256788888888888766543
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.58 E-value=8.3e-15 Score=119.78 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=63.8
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCc-ccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPK-SIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~ 88 (192)
...+++|++|++++|.+ ..+....+.++++|++|++++|.++.+|. .+..+++|++|++++|.++.+|. .+..+++
T Consensus 84 ~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred hhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 45667777777777776 55555566667777777777777776654 36667777777777776665443 3444455
Q ss_pred CCEEEccCC-CCccCCh-hhcCCCCCcEEEccccccC
Q 047078 89 LEILDLKNS-LVRELPV-EIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 89 L~~L~l~~n-~l~~lp~-~l~~l~~L~~L~l~~n~~~ 123 (192)
|+.|++++| .++.++. .+.++++|++|++++|.+.
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 555555442 2333333 2334444444444444433
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=7e-15 Score=127.99 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=101.0
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCc-ccCcccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVK-KIPKSIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~lp~~~~~l~~ 88 (192)
...+++|+.|++++|.+ .......+..+++|+.|++++|.+. .+|..+..+++|++|++++|+++ .+|..+..+++
T Consensus 414 l~~l~~L~~L~Ls~N~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYL--SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGCTTCCEEECCSSEE--ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HhcCCCCCEEECcCCcc--cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 45667777777777765 3334444566777777777777777 66777777777888888877777 67777777778
Q ss_pred CCEEEccCCCCc-cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCcc
Q 047078 89 LEILDLKNSLVR-ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPGC 161 (192)
Q Consensus 89 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 161 (192)
|+.|++++|.++ .+|.+++.+++|++|++++|++.+ ..|..+..+++|+.+++..|...+..+
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----------~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG----------NIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE----------ECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC----------cCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 888888887777 777777777888888888777764 244667888899999998887654443
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=4e-14 Score=110.75 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=91.2
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLE 90 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~ 90 (192)
...+++|+.|++++|.+ ..+. .+..+++|+.|++++|.++.+|. +..+++|++|++++|.++.+++ +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l--~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPL--KNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCC--SCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCC
T ss_pred HccCCCCCEEEccCCcC--CCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCcc
Confidence 66788888888888887 4432 35677888888888888876654 7778888888888888776654 67777888
Q ss_pred EEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 91 ILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
.|++++|.++.++. +..+++|+.|++++|.+... +. +..+++|+.|++..|...
T Consensus 155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~---~~---------l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI---SP---------LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GG---------GGGCTTCCEEECTTSCCC
T ss_pred EEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC---hh---------hcCCCCCCEEEccCCccC
Confidence 88888887777665 77777888888887777643 11 345566666666655543
No 49
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=2e-14 Score=105.08 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=108.6
Q ss_pred cEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc--cCCCCCccEEEeecCCCccc-CcccCCCCCCCEEEc
Q 047078 18 RSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG--VGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLEILDL 94 (192)
Q Consensus 18 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~--~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~~L~l 94 (192)
++++++++.+ ..++..++ .++++|++++|.+..++.. +..+++|++|++++|+++.+ |..|..+++|+.|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 6889999987 66655443 3899999999999977753 88999999999999999955 678999999999999
Q ss_pred cCCCCccCChh-hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCcc
Q 047078 95 KNSLVRELPVE-IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPGC 161 (192)
Q Consensus 95 ~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 161 (192)
++|.++.++.. +.++++|++|++++|++.+. .|..+..+++|+.+++..|...+...
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCV----------MPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEE----------CTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCee----------CHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999966654 78999999999999998852 23456788999999999999887543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=7.1e-15 Score=114.48 Aligned_cols=137 Identities=14% Similarity=0.185 Sum_probs=74.7
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCc--CCcccCCCCCccEEEeecCCCccc-CcccCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY--LPEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLL 87 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~ 87 (192)
...+++|+.|++.+|.+ .......+..+++|++|++++|.+.. +|..+..+++|++|++++|.++.+ |..+..++
T Consensus 122 ~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTTCTTCCEEECTTSCC--EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhccCCCEEECCCCcC--CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 34455555555555554 33333444455566666666665542 455555566666666666665533 34555556
Q ss_pred CCCEEEccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcc-cccceeecCCCCCCCC
Q 047078 88 GLEILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVF-VEFHDFLDPANGKFGP 159 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l-~~L~~l~~~~~~~~~~ 159 (192)
+|+.|++++|.++.++. .+..+++|+.|++++|.+.+. .+..+..+ ++|+.+++..|...+.
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS----------KKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC----------SSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc----------CHHHHHhhhccCCEEEccCCCeecc
Confidence 66666666666554443 345556666666666655431 12233444 3677777777766553
No 51
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=105.29 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=63.9
Q ss_pred EEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEEEccCC
Q 047078 19 SVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEILDLKNS 97 (192)
Q Consensus 19 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L~l~~n 97 (192)
.+++.++.+ ..++..+ .++|+.|++++|.++.+|..+..+++|++|++++|.++.+++ .|..+++|+.|++++|
T Consensus 14 ~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 455555554 3333222 234555555555555555555555555555555555554433 3555555555555555
Q ss_pred CCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 98 LVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 98 ~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
.++.+|+ .+..+++|++|++++|.+... +. ..+..+++|+.+++..|...+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~---~~-------~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV---PE-------GAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBC---CT-------TTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCee---Ch-------hhhhcCccccEEEeCCCCeec
Confidence 5554443 345555555555555555431 11 123445555555555555444
No 52
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=6.1e-15 Score=105.30 Aligned_cols=109 Identities=25% Similarity=0.258 Sum_probs=96.7
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCc-CCcccCCCCCccEEEeecCCCcccC--cccCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY-LPEGVGNLFNLHYLSVKNTNVKKIP--KSIGNLLG 88 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L~l~~n~~~~lp--~~~~~l~~ 88 (192)
..+++|+.|++.+|.+ ..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++++|.++.+| ..+..+++
T Consensus 46 ~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 46 AEFVNLEFLSLINVGL--ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGGGGCCEEEEESSCC--CCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred HhCCCCCEEeCcCCCC--CCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 6789999999999998 444 556789999999999999996 7766777999999999999999766 68899999
Q ss_pred CCEEEccCCCCccCCh----hhcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVRELPV----EIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~----~l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++.+|. .+..+++|++|++++|....
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999999998887 68899999999999997763
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.57 E-value=1.2e-14 Score=116.94 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=80.5
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLE 90 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~ 90 (192)
.+++++.|++.++.+ ..++..++..+++|++|++++|.++.++ ..+..+++|++|++++|.++.+|+ .++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 456666666666665 5566665666666777777766666544 356666667777776666664433 456666677
Q ss_pred EEEccCCCCccCChhh-cCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 91 ILDLKNSLVRELPVEI-RNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
.|++++|.++.+|..+ .++++|++|++++|.+... .+..+..+++|++|++..+..
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI----------EDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC----------CTTTTSSCTTCCEEECCSSCC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc----------ChhhccCCCCCCEEECCCCcC
Confidence 7777666666666553 5666666776666665532 112234555666666655543
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=9.7e-15 Score=109.99 Aligned_cols=110 Identities=16% Similarity=0.351 Sum_probs=86.4
Q ss_pred hhCCCcccEEEEeccC-CCCCccchhhhcCCCccCEEEccC-CCCCcCC-cccCCCCCccEEEeecCCCcccCcccCCCC
Q 047078 11 SIKHSKVRSVFLFNVD-KLPDSFMNASIANFKLMKVLDLED-APVDYLP-EGVGNLFNLHYLSVKNTNVKKIPKSIGNLL 87 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~ 87 (192)
...+++|++|++.+|. + ..+....+.++++|++|++++ |.++.+| ..+..+++|++|++++|.++.+|. +..++
T Consensus 51 ~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~ 127 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVY 127 (239)
T ss_dssp TTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCC
T ss_pred ccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccc
Confidence 4568888888888886 6 666666777888888888887 8888666 457788888888888888887776 77777
Q ss_pred CCC---EEEccCC-CCccCChh-hcCCCCCc-EEEccccccC
Q 047078 88 GLE---ILDLKNS-LVRELPVE-IRNLKKLR-YLMVYKYNYT 123 (192)
Q Consensus 88 ~L~---~L~l~~n-~l~~lp~~-l~~l~~L~-~L~l~~n~~~ 123 (192)
+|+ .+++++| .++.+|.. +.++++|+ .|++++|.+.
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 777 8888888 78776664 66788888 8888888765
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=2.9e-14 Score=119.12 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=90.5
Q ss_pred hCCCcccEEEEeccCCCCCccc--hhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCccc------
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFM--NASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSI------ 83 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~--~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~------ 83 (192)
..+++|+.|++++|.+ ..+. +..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+|..+
T Consensus 358 ~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~ 435 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHL--RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435 (549)
T ss_dssp TSSTTCCEEECTTSCC--CCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSE
T ss_pred hccccCcEEEccCCcc--cccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceE
Confidence 4566677777777765 3332 24456777788888888777777777777777777777777766554432
Q ss_pred ------------CCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeec
Q 047078 84 ------------GNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLD 151 (192)
Q Consensus 84 ------------~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 151 (192)
..+++|+.|++++|.++.+|. ...+++|++|++++|++.+. .+..+..+++|+.+++
T Consensus 436 L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 436 LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV----------PDGIFDRLTSLQKIWL 504 (549)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC----------CTTGGGGCTTCCEEEC
T ss_pred EECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc----------CHHHHhcCcccCEEEe
Confidence 145666666666666666665 34566677777777766542 2344678889999999
Q ss_pred CCCCCCCC
Q 047078 152 PANGKFGP 159 (192)
Q Consensus 152 ~~~~~~~~ 159 (192)
..|...+.
T Consensus 505 ~~N~~~~~ 512 (549)
T 2z81_A 505 HTNPWDCS 512 (549)
T ss_dssp CSSCBCCC
T ss_pred cCCCccCC
Confidence 98887654
No 56
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=4.3e-15 Score=128.64 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=102.3
Q ss_pred cchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCC
Q 047078 32 FMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKK 111 (192)
Q Consensus 32 ~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~ 111 (192)
++...+..+++|+.|++++|.+..+|..++.+++|++|++++|.++.+|..++.+++|+.|+|++|.++.+|..++++++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 34555678999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCcc
Q 047078 112 LRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPGC 161 (192)
Q Consensus 112 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 161 (192)
|++|++++|.+.. +| ..+..+++|+.|++..|......+
T Consensus 295 L~~L~L~~N~l~~---lp--------~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 295 LKYFYFFDNMVTT---LP--------WEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CSEEECCSSCCCC---CC--------SSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCEEECCCCCCCc---cC--------hhhhcCCCccEEeCCCCccCCCCh
Confidence 9999999998863 33 446889999999999998775443
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=119.17 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=108.0
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILD 93 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~ 93 (192)
++|+.|++++|.+ ..+....+.++++|++|++++|.++.+ |..++.+++|++|++++|+++.+|.. .+++|+.|+
T Consensus 21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 7899999999998 677767788999999999999999965 67899999999999999999988877 899999999
Q ss_pred ccCCCCcc--CChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhccccc--ceeecCCCCC
Q 047078 94 LKNSLVRE--LPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEF--HDFLDPANGK 156 (192)
Q Consensus 94 l~~n~l~~--lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L--~~l~~~~~~~ 156 (192)
+++|.++. +|..++++++|++|++++|.+.. ..+..+++| +.+++..+..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-------------~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-------------SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-------------GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch-------------hhccccccceeeEEEeecccc
Confidence 99999984 67899999999999999998764 224556666 8888877665
No 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.8e-14 Score=111.96 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=112.9
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGL 89 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L 89 (192)
....+++|+.|++.+|.+ ..+.+ +..+++|+.|++++|.++.+++ +..+++|++|++++|.++.+|. +..+++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp CHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred chhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 345788899999999997 45532 5789999999999999998776 8999999999999999998654 8999999
Q ss_pred CEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 90 EILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
+.|++++|.++.++ .+..+++|+.|++++|.+... ..+..+++|+.|+++.|......
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~------------~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI------------TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC------------GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc------------hhhccCCCCCEEEccCCccccch
Confidence 99999999999874 688999999999999988753 34678899999999998765543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=1.8e-14 Score=118.18 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=93.7
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCcc-cCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L 92 (192)
++++.|++++|.+ ..+....+.++++|+.|++++|.+..++ ..+..+++|++|++++|+++.+|+. +..+++|+.|
T Consensus 75 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 5799999999998 7777778889999999999999999665 6789999999999999999977764 7889999999
Q ss_pred EccCCCCccCCh-hhcCCCCCcEEEcccccc
Q 047078 93 DLKNSLVRELPV-EIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 93 ~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~ 122 (192)
++++|.++.+|. .+.++++|+.|++++|+.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCC
Confidence 999999997776 577999999999998543
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=2e-14 Score=121.60 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=102.5
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccC-cccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIP-KSIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp-~~~~~l~ 87 (192)
...++++|++|++++|.+ ..+....+.++++|++|++++|.+..+ |..++.+++|++|++++|.++.++ ..++.++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 457899999999999998 777777788999999999999999966 778999999999999999999666 5799999
Q ss_pred CCCEEEccCCCCc--cCChhhcCCCCCcEEEccccccCC
Q 047078 88 GLEILDLKNSLVR--ELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 88 ~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+|+.|++++|.++ .+|..++++++|++|++++|.+.+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9999999999987 579999999999999999998875
No 61
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=119.51 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=56.1
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcc-cCCCCCCCEEE
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEILD 93 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L~ 93 (192)
+++.|++++|.+ ..+....+.++++|++|++++|.+..+ |..+..+++|++|++++|+++.+|.. |..+++|+.|+
T Consensus 33 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 455555555555 444444445555555555555555533 44455555555555555555544442 45555555555
Q ss_pred ccCCCCcc-CChhhcCCCCCcEEEccccccC
Q 047078 94 LKNSLVRE-LPVEIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 94 l~~n~l~~-lp~~l~~l~~L~~L~l~~n~~~ 123 (192)
+++|.++. .|..+.++++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccc
Confidence 55555552 2334455555555555555443
No 62
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.4e-14 Score=101.70 Aligned_cols=83 Identities=25% Similarity=0.410 Sum_probs=38.6
Q ss_pred CccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcc-cCCCCCCCEEEccCCCCccCChh-hcCCCCCcEEEc
Q 047078 41 KLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEILDLKNSLVRELPVE-IRNLKKLRYLMV 117 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l 117 (192)
++|+.|++++|.++.+|.. +..+++|++|++++|+++.+|+. +..+++|+.|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3445555555554443322 34445555555555554443332 34445555555555555444433 334445555555
Q ss_pred cccccC
Q 047078 118 YKYNYT 123 (192)
Q Consensus 118 ~~n~~~ 123 (192)
++|.+.
T Consensus 108 ~~N~l~ 113 (177)
T 2o6r_A 108 DTNQLK 113 (177)
T ss_dssp CSSCCS
T ss_pred cCCcce
Confidence 555444
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=8.4e-15 Score=116.38 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=72.6
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc--ccCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK--SIGNLL 87 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~--~~~~l~ 87 (192)
...+++|++|++.+|.+ ..+....+.++++|++|++++|.++.+|.. +..+++|++|++++|+++.+|. .+..++
T Consensus 72 ~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred hccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 45667777777777766 455555556667777777777777766644 6667777777777777666655 466667
Q ss_pred CCCEEEccCC-CCccC-ChhhcCCCCCcEEEccccccCC
Q 047078 88 GLEILDLKNS-LVREL-PVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 88 ~L~~L~l~~n-~l~~l-p~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+|+.|++++| .++.+ |..+.++++|+.|++++|.+.+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 7777777766 35544 3346666667777776666543
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=118.18 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=105.3
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcc-cCcccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKK-IPKSIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~-lp~~~~~l~ 87 (192)
....+++|++|++.+|.+ ..+....+.++++|++|++++|.+..+|.. +..+++|++|++++|.++. .|..+..++
T Consensus 51 ~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 356788999999999987 666667778899999999999999987754 6889999999999999884 455788899
Q ss_pred CCCEEEccCCCCccC-ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 88 GLEILDLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 88 ~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
+|+.|++++|.++.+ |..+..+++|+.|++++|.+... + +..+..+++|+.|.+..+.
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-------~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI---P-------TEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC---C-------HHHHTTCTTCCEEEEESCC
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc---C-------hhHhcccCCCcEEeCCCCc
Confidence 999999999988844 45678889999999999887642 2 2335566666666666554
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=2.9e-14 Score=121.77 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=93.7
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCC--------CccEEEeecCCCcccCcccC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLF--------NLHYLSVKNTNVKKIPKSIG 84 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~--------~L~~L~l~~n~~~~lp~~~~ 84 (192)
.+++|+.|++++|.+ ..++...+..+++|+.|++++|.++.+|....... +|++|++++|+++.+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l--~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQI--SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCC--CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred cCCCCCEEECcCCcc--CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 455777788888777 56666666677888888888888777775543322 78888888888777777776
Q ss_pred --CCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccc------cCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 85 --NLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYN------YTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 85 --~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~------~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
.+++|+.|++++|.++.+|..++++++|+.|++++|+ +.+ ..|..+..+++|+.|+++.|..
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~----------~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR----------EWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC----------CCCTTGGGCSSCCEEECCSSCC
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc----------cChHHHhcCCCCCEEECCCCcC
Confidence 7788888888888877777777788888888885443 332 2334556677777777777665
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=116.91 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=60.2
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCC-CcccCc-ccCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTN-VKKIPK-SIGNLL 87 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~-~~~lp~-~~~~l~ 87 (192)
...+++|++|++++|.+ ..++...+..+++|+.|++++|.+..+|. .+..+++|++|++++|+ +..++. .|..++
T Consensus 108 ~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GTTCSSCCEEECCSSCC--SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred ccCCccCCEEECCCCcC--CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 45677777777777776 56666566677777777777777765543 35555555555555532 333333 344444
Q ss_pred CCCEEEccCCCCccCChhhcCCCCCcEEEcccccc
Q 047078 88 GLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
+|+.|++++|.++.+| .+..+++|+.|++++|.+
T Consensus 186 ~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp SCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred ccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence 4444444444444443 233444444444444433
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.55 E-value=2e-14 Score=111.90 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=83.6
Q ss_pred hCCCcccEEEEeccCCCCCccch-hhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecCCCcc--cCcccCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMN-ASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTNVKK--IPKSIGNLL 87 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~--lp~~~~~l~ 87 (192)
..+++|+.|++.+|.+ ..+.. ..+..+++|++|++++|.+. ..|..+..+++|++|++++|.++. +|..+..++
T Consensus 98 ~~l~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp ETCTTCCEEECTTSEE--ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CCCCCCCEEECCCCcc--cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 3455555555555554 22222 33455666666666666666 334446666777777777776653 566667777
Q ss_pred CCCEEEccCCCCccC-ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 88 GLEILDLKNSLVREL-PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 88 ~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
+|+.|++++|.++.+ |..+..+++|+.|++++|.+.+. + +..+..+++|+.|+++.|....
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-------~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL---D-------TFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC---C-------SGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc---C-------hhhccCcccCCEeECCCCCCcc
Confidence 777777777777644 45566777777777777766542 1 1235677888888888876443
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=4.1e-14 Score=118.94 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=99.5
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILD 93 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~ 93 (192)
++++.|++++|.+ ..+....+.++++|++|++++|.++.+ |..+..+++|++|++++|+++.+|.. .+++|+.|+
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 7789999999987 667767778889999999999998865 56688899999999999998888877 788999999
Q ss_pred ccCCCCccC--ChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhccccc--ceeecCCCCC
Q 047078 94 LKNSLVREL--PVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEF--HDFLDPANGK 156 (192)
Q Consensus 94 l~~n~l~~l--p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L--~~l~~~~~~~ 156 (192)
+++|.++.+ |..++++++|++|++++|.+... .+..++.| +.+++..+..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-------------~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------------DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-------------TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC-------------chhhhhhceeeEEEeecccc
Confidence 999988865 46788999999999999887641 12334444 7777777654
No 69
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.5e-14 Score=102.87 Aligned_cols=107 Identities=19% Similarity=0.303 Sum_probs=95.2
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L 92 (192)
+++++|++.+|.+ ..++ ..+.++++|+.|++++|.++.++ ..+..+++|++|++++|+++.+++ .|..+++|+.|
T Consensus 31 ~~l~~L~L~~n~i--~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQF--TLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCC--CSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcC--chhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 5799999999998 5555 56789999999999999999776 558999999999999999997665 68999999999
Q ss_pred EccCCCCccCChh-hcCCCCCcEEEccccccCC
Q 047078 93 DLKNSLVRELPVE-IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 93 ~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~ 124 (192)
++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999999988875 7789999999999998864
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=9.4e-15 Score=122.12 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=97.5
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCcc-cCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L 92 (192)
++|++|++++|.+ .......+.++++|++|++++|.+..++ ..++.+++|++|++++|.++.+|+. ++.+++|+.|
T Consensus 26 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 6788888888887 5665566678888899999888888554 5688888889999988888866664 8888888898
Q ss_pred EccCCCCc--cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 93 DLKNSLVR--ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 93 ~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
++++|.++ ..|..++++++|++|++++|.+.+ .++. ..+..+++|++|++..+..
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~-------~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRR-------IDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECT-------TTTTTCCEEEEEEEEETTC
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCcccc--ccCH-------hhhhcccccCeeeccCCcc
Confidence 88888887 446678888888888888886432 2221 2345566666666665543
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=2.7e-14 Score=107.53 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=107.6
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCC-CCcCCc-ccCCCCCccEEEeec-CCCcccCc-ccCCCCCCC
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYLPE-GVGNLFNLHYLSVKN-TNVKKIPK-SIGNLLGLE 90 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~lp~-~~~~l~~L~~L~l~~-n~~~~lp~-~~~~l~~L~ 90 (192)
++++.|++.+|.+ ..++...+.++++|+.|++++|. ++.+|+ .+..+++|++|++++ |+++.+|+ .|..+++|+
T Consensus 31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 4799999999998 77777788899999999999997 987775 688999999999998 99997775 688999999
Q ss_pred EEEccCCCCccCChhhcCCCCCc---EEEcccc-ccCCCccCChhHHHhhHHHhhcccccc-eeecCCCCC
Q 047078 91 ILDLKNSLVRELPVEIRNLKKLR---YLMVYKY-NYTAGATLAGEAAAKLHEFIDVFVEFH-DFLDPANGK 156 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~~~~~~~l~~L~-~l~~~~~~~ 156 (192)
.|++++|.++.+|. +..+++|+ +|++++| .+.. ++. ..+..+++|+ .+++..+..
T Consensus 109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~---i~~-------~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS---IPV-------NAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE---ECT-------TTTTTTBSSEEEEECCSCCC
T ss_pred EEeCCCCCCccccc-cccccccccccEEECCCCcchhh---cCc-------ccccchhcceeEEEcCCCCC
Confidence 99999999999987 88888888 9999999 7764 221 2345677777 777766653
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=1.1e-14 Score=114.15 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=98.1
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-Cccc-CCCCCccEEEeecCCCcccCcccCCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGV-GNLFNLHYLSVKNTNVKKIPKSIGNLLGLE 90 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~-~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~ 90 (192)
.+++|+.|++.+|.+ ..+....+..+++|++|++++|.+..+ |..+ ..+++|++|++++|.++.+|.. ..+++|+
T Consensus 118 ~~~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~ 194 (317)
T 3o53_A 118 RGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLK 194 (317)
T ss_dssp CCSSCEEEECCSSCC--CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCC
T ss_pred ccCCCCEEECCCCCC--CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCC
Confidence 356677777777776 555555566778888888888888844 3444 3678888888888888866433 3578888
Q ss_pred EEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 91 ILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
.|++++|.++.+|..+..+++|+.|++++|.+.. +|..+..+++|+.+++..|...+
T Consensus 195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-----------l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-----------IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-----------ECTTCCCCTTCCEEECTTCCCBH
T ss_pred EEECCCCcCCcchhhhcccCcccEEECcCCcccc-----------hhhHhhcCCCCCEEEccCCCccC
Confidence 8888888888888888888888888888887763 23345677888888888887763
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=2.3e-14 Score=121.16 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=101.7
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCc-ccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPK-SIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~ 88 (192)
...+++|++|++++|.+ ..+....+.++++|++|++++|+++.+|. .+..+.+|++|++++|+++.+|+ .|+.+++
T Consensus 72 f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 46899999999999998 77888888999999999999999998875 58999999999999999998776 5899999
Q ss_pred CCEEEccCCCCc--cCChhhcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVR--ELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++ .+|..++.+++|++|++++|++.+
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 999999999987 567788999999999999998875
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=4.3e-14 Score=110.62 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=100.8
Q ss_pred CCCcccEEEEeccCCCCC-ccchhhh-cCCCccCEEEccCCCCCcCCcccCCC-----CCccEEEeecCCCcccC-cccC
Q 047078 13 KHSKVRSVFLFNVDKLPD-SFMNASI-ANFKLMKVLDLEDAPVDYLPEGVGNL-----FNLHYLSVKNTNVKKIP-KSIG 84 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~-~~~~~~~-~~l~~L~~L~l~~n~i~~lp~~~~~l-----~~L~~L~l~~n~~~~lp-~~~~ 84 (192)
.+++|++|++++|.+ . ..+..++ ..+++|++|++++|.++.+|..++.+ ++|++|++++|+++.++ ..++
T Consensus 93 ~l~~L~~L~L~~n~l--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEV--TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBC--BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcc--cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 588899999999987 3 2333332 67889999999999888667667666 88999999999988555 6788
Q ss_pred CCCCCCEEEccCCCCc-c--CChhh--cCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 85 NLLGLEILDLKNSLVR-E--LPVEI--RNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 85 ~l~~L~~L~l~~n~l~-~--lp~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
.+++|+.|++++|.+. . +|..+ .++++|++|++++|.+.... ......+..+++|+.|+++.|....
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-------GVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH-------HHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH-------HHHHHHHhcCCCCCEEECCCCcCCc
Confidence 8899999999998865 2 35555 78888999999988776421 1112233466788888887776554
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.53 E-value=4.9e-14 Score=118.11 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=111.7
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~ 87 (192)
....+++|++|++++|.+ ..+....+.++++|++|++++|.+..+| ..+..+++|++|++++|+++.++. .++.++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 457899999999999998 7777777889999999999999999665 679999999999999999997776 689999
Q ss_pred CCCEEEccCCCCcc--CChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhccccc----ceeecCCCC
Q 047078 88 GLEILDLKNSLVRE--LPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEF----HDFLDPANG 155 (192)
Q Consensus 88 ~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L----~~l~~~~~~ 155 (192)
+|+.|++++|.++. +|..++++++|++|++++|.+... + +..+..+++| ..+++..+.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~---~-------~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---Y-------CTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE---C-------GGGGHHHHTCTTCCCEEECTTCC
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee---c-------HHHccchhccchhhhhcccCCCC
Confidence 99999999999884 799999999999999999988742 1 2334445555 556665554
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.53 E-value=5.5e-14 Score=116.89 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=99.5
Q ss_pred hhCCCcccEEEEeccCCCCCccch--hhhcCCCccCEEEccCCCCCc-CCcc-cCCCCCccEEEeecCCCc-ccCcccCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMN--ASIANFKLMKVLDLEDAPVDY-LPEG-VGNLFNLHYLSVKNTNVK-KIPKSIGN 85 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~--~~~~~l~~L~~L~l~~n~i~~-lp~~-~~~l~~L~~L~l~~n~~~-~lp~~~~~ 85 (192)
...+++|++|++++|.+ ..+.. ..+..+++|++|++++|.+.. +|.. +..+++|++|++++|+++ ..|..+.
T Consensus 344 ~~~l~~L~~L~L~~N~l--~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 344 CGHLTELETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp CCCCSSCCEEECCSSCC--CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred hccCCCCCEEEccCCcc--CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence 35667777777777776 33222 344677777777777777774 6654 666777777777777775 5555443
Q ss_pred CCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 86 LLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 86 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++|+.|++++|.++.+|.++..+++|++|++++|++.. +|.. .+..+++|+++++..|...+..
T Consensus 421 -~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~---l~~~-------~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS---VPDG-------IFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp -TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC---CCTT-------TTTTCTTCCEEECCSSCBCCCH
T ss_pred -ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc---cCHH-------HhccCCcccEEECcCCCCcccC
Confidence 68899999999999999888899999999999998874 3321 3577899999999999887654
No 77
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.3e-13 Score=99.18 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=97.1
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCcc-cCCCCCCCE
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEI 91 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~ 91 (192)
.++|+.|++.+|.+ ..++...+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|+. +..+++|+.
T Consensus 27 ~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 47899999999998 677777778899999999999999987755 68999999999999999977764 688999999
Q ss_pred EEccCCCCccCChhh-cCCCCCcEEEccccccCC
Q 047078 92 LDLKNSLVRELPVEI-RNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 92 L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~~~~ 124 (192)
|++++|.++.+|..+ ..+++|++|++++|++..
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999999999888874 679999999999998875
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.53 E-value=3e-14 Score=122.05 Aligned_cols=138 Identities=16% Similarity=0.084 Sum_probs=83.0
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccC-cccCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIP-KSIGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp-~~~~~l~~ 88 (192)
...+++|++|++++|.+ .......+.++++|++|++++|.+..+|+ .++.+++|++|++++|+++.+| ..|+.+++
T Consensus 45 ~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 34556666666666665 44444555566666666666666666554 3666666666666666666444 35666666
Q ss_pred CCEEEccCCCCc-cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHh--hcccccceeecCCCCCCCCc
Q 047078 89 LEILDLKNSLVR-ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFI--DVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 89 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~--~~l~~L~~l~~~~~~~~~~~ 160 (192)
|+.|++++|.++ ..|..++++++|++|++++|.+.+. + +..+ ..+++|+.|++..+......
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-------~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL---K-------SEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB---C-------HHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCccccc---C-------HHHhhccccccccEEECCCCcccccC
Confidence 666666666665 3334455666666666666665531 1 1222 24477888888877655443
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=8.5e-14 Score=111.93 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=98.9
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCcc-cCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~ 88 (192)
...+++|++|++.+|.+ ..+....+..+++|++|++++|.+..+| ..++.+++|++|++++|.++.+|.. +..+++
T Consensus 65 ~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 46789999999999998 7777777889999999999999999665 5589999999999999999988886 588999
Q ss_pred CCEEEccCCCCccCCh-hhcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++.+++ .+.++++|+.|++++|.+..
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 9999999999996654 58899999999999998875
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=9.5e-14 Score=109.25 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=67.8
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCccc-CcccCCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLE 90 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~ 90 (192)
..+++|+.|++.+|.+.........+.++++|+.|++++|.++.+|..+. ++|++|++++|.++.+ |..+..+++|+
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 44555555555555541111223333455555555555555555443332 4555555555555532 34455555566
Q ss_pred EEEccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 91 ILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 91 ~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
.|++++|.++.++. .+..+++|+.|++++|.+.. +|..+..+++|+++++..|....
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-----------VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-----------CCTTTTTCSSCCEEECCSSCCCC
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-----------CChhhccCCCcCEEECCCCcCCc
Confidence 66666555553333 45555556666666555542 22334555666666666555433
No 81
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=3.5e-14 Score=120.09 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=73.5
Q ss_pred cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcc-cCcccCCCCCCCEEE
Q 047078 16 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKK-IPKSIGNLLGLEILD 93 (192)
Q Consensus 16 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~-lp~~~~~l~~L~~L~ 93 (192)
+++.|++++|.+ ..+....+.++++|++|++++|.+..+ |..+..+++|++|++++|+++. .|..++.+++|+.|+
T Consensus 34 ~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCcc--CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 567777777776 555555666777777777777777643 5557777777777777777763 355677777777777
Q ss_pred ccCCCCccC-ChhhcCCCCCcEEEccccccCC
Q 047078 94 LKNSLVREL-PVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 94 l~~n~l~~l-p~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+++|.++.+ |..++++++|++|++++|.+.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccc
Confidence 777777755 4456677777777777776654
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=6e-14 Score=123.26 Aligned_cols=134 Identities=19% Similarity=0.158 Sum_probs=87.5
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cC-CcccCCCCCccEEEeecCCCcc-cCcccCCCCCCC
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YL-PEGVGNLFNLHYLSVKNTNVKK-IPKSIGNLLGLE 90 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~l-p~~~~~l~~L~~L~l~~n~~~~-lp~~~~~l~~L~ 90 (192)
.+++++|++++|.+ ..+....+.++++|++|++++|... .+ |..+..+++|++|++++|+++. .|..|+.+++|+
T Consensus 23 p~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 46677777777776 5555556667777777777777433 55 4557777777777777777773 356677777777
Q ss_pred EEEccCCCCc-cCChh--hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 91 ILDLKNSLVR-ELPVE--IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 91 ~L~l~~n~l~-~lp~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
.|++++|.++ .+|.. +.++++|++|++++|.+.+.. .+..+.++++|++|+++.|....
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~---------~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY---------LHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC---------CCGGGGTCSSCCEEEEESSCCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc---------cchhHhhCCCCCEEECCCCcCCe
Confidence 7777777776 34544 667777777777777665421 11234566666666666655433
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=8.4e-14 Score=122.44 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=99.1
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCC--------CccEEEeecCCCcccCcccC-
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLF--------NLHYLSVKNTNVKKIPKSIG- 84 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~--------~L~~L~l~~n~~~~lp~~~~- 84 (192)
.++|+.|++++|.+ ..++...+..+++|+.|++++|.+..+|..+.... +|+.|++++|+++.+|..+.
T Consensus 672 ~~~L~~L~Ls~N~L--~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 672 GINASTVTLSYNEI--QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCEEEEECCSSCC--CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred CCCcCEEEccCCcC--CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 34788888888887 56666666678888888888888887776654432 78888888888888888776
Q ss_pred -CCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccc------cCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 85 -NLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYN------YTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 85 -~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~------~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
.+++|+.|++++|.++.+|..++++++|+.|++++|+ +.+ .+|..+..+++|+.|+++.|..
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~----------~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR----------QWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC----------CCCTTGGGCSSCCEEECCSSCC
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc----------cChHHHhcCCCCCEEECCCCCC
Confidence 7888888888888888888888888888888887643 332 2345567778888888877765
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=6.1e-14 Score=118.85 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=76.2
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLE 90 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~ 90 (192)
.+++++.+.+.+|.+ ..++..++..+++|++|++++|.+..+| ..++.+++|++|++++|.++.+|+ .|+.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 345566666666665 5555555556666666666666666443 355666666666666666664443 345666666
Q ss_pred EEEccCCCCccCChhh-cCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 91 ILDLKNSLVRELPVEI-RNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
.|++++|.++.+|..+ +++++|++|++++|.+.+. .+..+..+++|+.|++..|..
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI----------EDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC----------CTTTTTTCTTCCEEECTTSCC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC----------ChhhhhcCCcCcEEECcCCCC
Confidence 6666666666555543 5666666666666655531 122344555566665555543
No 85
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=9e-14 Score=113.65 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=102.5
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCC-cccCCCCCccEEEeecCCCcc-cCcccCCCCCCCE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLP-EGVGNLFNLHYLSVKNTNVKK-IPKSIGNLLGLEI 91 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp-~~~~~l~~L~~L~l~~n~~~~-lp~~~~~l~~L~~ 91 (192)
++|++|++++|.+ ..+....+.++++|++|++++|.+. .++ ..+..+++|++|++++|.++. .|..++.+++|+.
T Consensus 30 ~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 6788899998887 6666667788888999999988876 554 557888889999999888884 4667888888999
Q ss_pred EEccCCCCc-cCChh--hcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 92 LDLKNSLVR-ELPVE--IRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 92 L~l~~n~l~-~lp~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
|++++|.++ ..|.. +.++++|++|++++|.+.+. .+. ..+..+++|++|++..+......
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~-------~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI--QPA-------SFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC--CCC-------GGGGGCTTCCEEECTTCCBSCCC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCcc--Ccc-------cccCCCCcccEEeCCCCcccccC
Confidence 999888887 34544 77888899999988887752 111 12567788888888877655443
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=1.8e-13 Score=116.16 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=87.6
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLL 87 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~ 87 (192)
++.+..+++|+.|++++|.+ ..+.. +..+++|+.|++++|.+..+| .+..+++|+.|++++|+++.+ +.+..++
T Consensus 58 l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~ 131 (605)
T 1m9s_A 58 VQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLP 131 (605)
T ss_dssp CTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCT
T ss_pred ChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCC
Confidence 34566777888888888876 44433 567777888888777777654 567777777777777777755 3466777
Q ss_pred CCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 88 GLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
+|+.|++++|.++.+ ..+..+++|+.|++++|.+.+.. + +..+++|+.|+++.|...
T Consensus 132 ~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~----------~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV----------P--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG----------G--GTTCTTCCEEECCSSCCC
T ss_pred ccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch----------h--hccCCCCCEEECcCCCCC
Confidence 777777777777766 45667777777777777666421 1 345555666665555433
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.51 E-value=1.7e-13 Score=117.43 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=112.3
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEIL 92 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L 92 (192)
++++.|++++|.+ ..++...+.++++|++|++++|.+..+ |..++.+++|++|++++|.++.+|+ .|+.+++|+.|
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 6799999999998 777777788999999999999999855 5668899999999999999998887 58999999999
Q ss_pred EccCCCCccCC-hhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCC
Q 047078 93 DLKNSLVRELP-VEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGP 159 (192)
Q Consensus 93 ~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 159 (192)
++++|.++.+| ..++++++|++|++++|.+.+. .+..+.++++|++|++..+.....
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST----------KLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC----------CCCSSSCCTTCCEEECCSSCCCCB
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCccccc----------CchhhcccccCCEEEccCCccccc
Confidence 99999999776 4688999999999999988752 123356889999999988875543
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.51 E-value=2.8e-13 Score=106.55 Aligned_cols=129 Identities=12% Similarity=0.149 Sum_probs=92.0
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILD 93 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~ 93 (192)
++++.|++++|.+ ..+....+.++++|++|++++|.++.+ |..+..+++|++|++++|+++.+|..+. ++|+.|+
T Consensus 52 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence 5678888888887 666666677888888888888888855 6678888888888888888887776654 6788888
Q ss_pred ccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 94 LKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 94 l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
+++|.++.++. .+.++++|+.|++++|.+..... .+..+..+++|+.+.+..+.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI--------ENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB--------CTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCc--------ChhhccCCCCcCEEECCCCc
Confidence 88888776555 36677888888888877653111 12334556666666665554
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=1.4e-13 Score=116.72 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=98.8
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCcc-cCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPKS-IGNLLG 88 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~ 88 (192)
...+++|++|++.+|.+ ..++...+..+++|++|++++|.+..+|+ .++.+++|++|++++|.++.+|+. |+.+++
T Consensus 71 ~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp HHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 45789999999999998 67777778899999999999999997664 478999999999999999988876 589999
Q ss_pred CCEEEccCCCCccCCh-hhcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.|++++|.++.+++ .++++++|++|++++|.+.+
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 9999999999996655 68899999999999998875
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=3.9e-14 Score=117.42 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCc-CCcccC-CCCCccEEEeecCCCcccCcccCCCCCCCE
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY-LPEGVG-NLFNLHYLSVKNTNVKKIPKSIGNLLGLEI 91 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-lp~~~~-~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~ 91 (192)
+++|+.|++.+|.+ ....+..+..+++|+.|++++|.+.. .|..+. .+++|++|++++|.++.+|. ...+++|+.
T Consensus 119 l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 195 (487)
T 3oja_A 119 GQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKT 195 (487)
T ss_dssp CSSCEEEECCSSCC--CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCE
T ss_pred cCCCCEEECCCCCC--CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCE
Confidence 45666666666665 44444455566777777777777763 444444 56777777777777765533 334677777
Q ss_pred EEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 92 LDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 92 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
|++++|.++.+|+.+..+++|+.|++++|.+.+ +|..+..+++|+.+++..|...
T Consensus 196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-----------lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-----------IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-----------ECTTCCCCTTCCEEECTTCCBC
T ss_pred EECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-----------cchhhccCCCCCEEEcCCCCCc
Confidence 777777777776667777777777777776653 2233456667777777766655
No 91
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.50 E-value=2.3e-14 Score=122.35 Aligned_cols=143 Identities=15% Similarity=0.213 Sum_probs=111.9
Q ss_pred hhCCCcccEEEEeccCCCCCcc-----------------chhhhc--CCCccCEEEccCCCCC-cCCcccCCCCCccEEE
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSF-----------------MNASIA--NFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLS 70 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~ 70 (192)
+..+++|++|++++|.+ ... .+..+. ++++|++|++++|.+. .+|..++.+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPF--VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCcc--ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 57899999999999997 331 233335 7899999999999877 8898999999999999
Q ss_pred eecCC-Cc--ccCcccCCC------CCCCEEEccCCCCccCCh--hhcCCCCCcEEEccccccCCCccCCh---------
Q 047078 71 VKNTN-VK--KIPKSIGNL------LGLEILDLKNSLVRELPV--EIRNLKKLRYLMVYKYNYTAGATLAG--------- 130 (192)
Q Consensus 71 l~~n~-~~--~lp~~~~~l------~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~~~~~~~~~~--------- 130 (192)
+++|+ ++ .+|..++.+ ++|+.|++++|.++.+|. .++++++|++|++++|.+.+ .+|.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g--~ip~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE--ECCCCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc--chhhhCCCCCCCE
Confidence 99998 87 588888776 899999999999999998 89999999999999998873 2221
Q ss_pred -----hHHHhhHHHhhcccc-cceeecCCCCCC
Q 047078 131 -----EAAAKLHEFIDVFVE-FHDFLDPANGKF 157 (192)
Q Consensus 131 -----~~~~~~~~~~~~l~~-L~~l~~~~~~~~ 157 (192)
..-..+|..+..+++ |+.|++..|...
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence 000024555677777 777777776644
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.50 E-value=1.7e-13 Score=115.17 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=94.1
Q ss_pred hCCCcccEEEEeccCCCCCccc--hhhhcCCCccCEEEccCCCCCc-CCcc-cCCCCCccEEEeecCCCc-ccCcccCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFM--NASIANFKLMKVLDLEDAPVDY-LPEG-VGNLFNLHYLSVKNTNVK-KIPKSIGNL 86 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~--~~~~~~l~~L~~L~l~~n~i~~-lp~~-~~~l~~L~~L~l~~n~~~-~lp~~~~~l 86 (192)
..+++|+.|++.+|.+ ..+. ...+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|+++ ..|..+.
T Consensus 374 ~~l~~L~~L~L~~N~l--~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 374 STLKRLQTLILQRNGL--KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp CSCSSCCEEECCSSCC--CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred cccCCCCEEECCCCCc--CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 4566666666666665 3222 2234566667777777776664 5543 556667777777777665 4444433
Q ss_pred CCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 87 LGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 87 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++|+.|++++|.++.+|.+++.+++|+.|++++|++.. +|.. .+..+++|+.+++..|...+.-
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~---l~~~-------~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS---VPDG-------VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC---CCTT-------STTTCTTCCCEECCSCCBCCCH
T ss_pred CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC---CCHH-------HHhcCCCCCEEEecCCCcCCCc
Confidence 68899999999999999888899999999999998874 3321 2578899999999999887643
No 93
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.5e-13 Score=98.57 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=89.4
Q ss_pred ccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcc-cCCCCCCCEEEc
Q 047078 17 VRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEILDL 94 (192)
Q Consensus 17 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L~l 94 (192)
.+.+++++|.+ ..++..+ .++|+.|++++|.++.+ |..+..+++|++|++++|+++.+|+. |..+++|+.|++
T Consensus 11 ~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 57899999997 5565544 37899999999999977 56689999999999999999988775 589999999999
Q ss_pred cCCCCccCChh-hcCCCCCcEEEccccccCC
Q 047078 95 KNSLVRELPVE-IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 95 ~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~ 124 (192)
++|.++.+|.. +..+++|++|++++|++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999988875 7899999999999998874
No 94
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.50 E-value=6.2e-13 Score=105.08 Aligned_cols=110 Identities=17% Similarity=0.306 Sum_probs=60.4
Q ss_pred cCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEc
Q 047078 38 ANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMV 117 (192)
Q Consensus 38 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l 117 (192)
..+++|+.|++++|.+..++. +..+++|++|++++|.++.+ +.+..+++|+.|++++|.++.+| .+..+++|+.|++
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L 294 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFL 294 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred hcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEEC
Confidence 344555555555555554433 44555555555555555443 23445555555555555555443 3445555555555
Q ss_pred cccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 118 YKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 118 ~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++|.+.. ..+..+..+++|+.+++..|......
T Consensus 295 ~~n~l~~----------~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 295 NNNQLGN----------EDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CSSCCCG----------GGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred cCCcCCC----------cChhHhhccccCCEEEccCCcccccc
Confidence 5554442 23455677888888888887765543
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.50 E-value=1.7e-13 Score=115.80 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=113.2
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCc-CCcccCCCCCccEEEeecCCCccc-CcccCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY-LPEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLL 87 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~ 87 (192)
....+++|++|++++|.+ ..+....+.++++|++|++++|.+.. .|..++.+++|++|++++|.++.+ |..++.++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred HhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 457899999999999998 67777778899999999999999995 467899999999999999999966 56789999
Q ss_pred CCCEEEccCCCCccCC-hhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccc--eeecCCCCCC
Q 047078 88 GLEILDLKNSLVRELP-VEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFH--DFLDPANGKF 157 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~ 157 (192)
+|+.|++++|.++.++ +.+..+++|++|++++|.+... .+..+..+++|+ .+++..+...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL----------SKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE----------CHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCccccc----------ChhhhhhhcccceeEEecCCCccC
Confidence 9999999999998653 3455699999999999988742 235567778887 6777776643
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=3.5e-14 Score=111.36 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=108.7
Q ss_pred hhCCCcccEEEEeccCCCCCccchhh-hcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNAS-IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGL 89 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L 89 (192)
...+++|+.|++++|.+ ....... ...+++|++|++++|.++.+|. ...+++|++|++++|+++.+|+.+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 216 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (317)
T ss_dssp TGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred hhccCCCCEEECCCCCC--CcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcc
Confidence 45689999999999998 5554443 3578999999999999997754 345999999999999999999999999999
Q ss_pred CEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecC
Q 047078 90 EILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDP 152 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 152 (192)
+.|++++|.++.+|..+..+++|+.|++++|.+.. ...+..+..++.|+.+...
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~---------~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC---------GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH---------HHHHHHHHTCHHHHHHHHH
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCccC---------cCHHHHHhccccceEEECC
Confidence 99999999999999999999999999999998862 1345666677777776655
No 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.7e-13 Score=98.67 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=89.4
Q ss_pred ccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcc-cCCCCCCCEEEc
Q 047078 17 VRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKS-IGNLLGLEILDL 94 (192)
Q Consensus 17 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~-~~~l~~L~~L~l 94 (192)
-+.+++.+|.+ ..++..+ .++|++|++++|.++.+ |..+..+++|++|++++|+++.+|+. |..+++|+.|++
T Consensus 14 ~~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 36889999987 6665544 37899999999999976 56689999999999999999988876 588999999999
Q ss_pred cCCCCccCChh-hcCCCCCcEEEccccccCC
Q 047078 95 KNSLVRELPVE-IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 95 ~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~~ 124 (192)
++|.++.+|.. +..+++|++|++++|.+..
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99999988886 7899999999999998874
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=2.6e-14 Score=100.03 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=97.0
Q ss_pred CCCccCEEEccCCCCC--cCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCcc-CChhhcCCCCCcEE
Q 047078 39 NFKLMKVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRE-LPVEIRNLKKLRYL 115 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L 115 (192)
..++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|+.|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4588999999999998 8888889999999999999999977 788999999999999999996 77777789999999
Q ss_pred EccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 116 MVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 116 ~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++++|.+.+. ..+..+..+++|+++++..|......
T Consensus 94 ~ls~N~i~~~---------~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDL---------STIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSCCCSH---------HHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ECCCCcCCCh---------HHHHHHhhCCCCCEEeCcCCcccchH
Confidence 9999988752 12356788999999999998765443
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.49 E-value=5.6e-13 Score=105.34 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=61.5
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLE 90 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~ 90 (192)
...+++|++|++.+|.+ ..+.. +..+++|++|++++|.++.+| .+..+++|++|++++|.++.++. +..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQI--TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hhhcCCccEEEccCCcc--ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence 34455555555555554 22222 344555555555555554442 34555555555555555554433 44455555
Q ss_pred EEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 91 ILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
.+++++|.....+..+..+++|++|++++|.+.... .+..+++|+.+++..+..
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~------------~~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT------------PIANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG------------GGGGCTTCSEEECTTSCC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCch------------hhccCCCCCEEEccCCcc
Confidence 555555533322223445555555555555443210 134555566665555543
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.6e-14 Score=102.94 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=96.2
Q ss_pred hhhhCCC-cccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCccc-CCCCCccEEEeecCCCcccCc--ccC
Q 047078 9 LESIKHS-KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTNVKKIPK--SIG 84 (192)
Q Consensus 9 ~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~-~~l~~L~~L~l~~n~~~~lp~--~~~ 84 (192)
+....+. +|+.|++++|.+ ..+ ..+..+++|++|++++|.++.+|+.+ ..+++|++|++++|+++.+|. .+.
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l--~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~ 110 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEI--RKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCC--CEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGG
T ss_pred HHhhhcCCCCCEEECCCCCC--Ccc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhh
Confidence 3344444 999999999998 444 45678999999999999999888664 889999999999999998887 788
Q ss_pred CCCCCCEEEccCCCCccCChh----hcCCCCCcEEEccccccC
Q 047078 85 NLLGLEILDLKNSLVRELPVE----IRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 85 ~l~~L~~L~l~~n~l~~lp~~----l~~l~~L~~L~l~~n~~~ 123 (192)
.+++|+.+++++|.++.+|.. +..+++|+.|++++|...
T Consensus 111 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999999999988885 889999999999988654
No 101
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=2.7e-14 Score=125.57 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=87.6
Q ss_pred hhCCCcccEEEEeccCCCCCc------------------cchhh-hcCCCccCEEEccCCCCC-cCCcccCCCCCccEEE
Q 047078 11 SIKHSKVRSVFLFNVDKLPDS------------------FMNAS-IANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLS 70 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~------------------~~~~~-~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~ 70 (192)
+..+++|++|++++|.+ .. ++..+ +.++++|++|++++|.+. .+|..++.+++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N~L--sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPF--TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcC--CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 56788899999999987 33 33332 237888999999988766 7888888899999999
Q ss_pred eecCC-Cc--ccCcccCCCC-------CCCEEEccCCCCccCCh--hhcCCCCCcEEEccccccC
Q 047078 71 VKNTN-VK--KIPKSIGNLL-------GLEILDLKNSLVRELPV--EIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 71 l~~n~-~~--~lp~~~~~l~-------~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~~~ 123 (192)
+++|+ ++ .+|..++.++ +|+.|++++|.++.+|. .++++++|+.|++++|.+.
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence 99887 76 4776655444 88888888888888888 7888888888888888776
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=3.1e-13 Score=106.44 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=78.7
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEE
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILD 93 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~ 93 (192)
++++.|++.+|.+ ..+....+.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..+. ++|+.|+
T Consensus 54 ~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 5677888888876 555555667788888888888887754 5667778888888888888777776654 6788888
Q ss_pred ccCCCCccCChh-hcCCCCCcEEEccccccC
Q 047078 94 LKNSLVRELPVE-IRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 94 l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~ 123 (192)
+++|.++.+|.. +.++++|+.|++++|.+.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 888887766654 667888888888887764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=2.9e-13 Score=114.97 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=109.2
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLL 87 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~ 87 (192)
++....+++|+.|++.+|.+ ..++ .+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.++.+ +.+..++
T Consensus 80 ~~~l~~l~~L~~L~Ls~N~l--~~l~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~ 153 (605)
T 1m9s_A 80 IKPLTNLKNLGWLFLDENKI--KDLS--SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLT 153 (605)
T ss_dssp CGGGGGCTTCCEEECCSSCC--CCCT--TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCT
T ss_pred ChhhccCCCCCEEECcCCCC--CCCh--hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccC
Confidence 33477899999999999997 4433 457899999999999999876 4588899999999999999977 6788999
Q ss_pred CCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 88 GLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
+|+.|+|++|.++.+++ +..+++|+.|++++|.+... ..+..+++|+.|.+..|...
T Consensus 154 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l------------~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL------------RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC------------GGGTTCTTCSEEECCSEEEE
T ss_pred CCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC------------hHHccCCCCCEEEccCCcCc
Confidence 99999999999997766 88999999999999988753 22577889999988877643
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.46 E-value=3.7e-13 Score=118.26 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=98.3
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcC-CcccCCCCCccEEEeecCCCc-ccCcc--cCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTNVK-KIPKS--IGN 85 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~-~lp~~--~~~ 85 (192)
....+++|++|++++|.. ...+....+.++++|++|++++|.+..+ |..+..+++|++|++++|.++ .+|.. +..
T Consensus 43 ~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 457899999999999954 2455567778999999999999999954 788999999999999999998 46665 899
Q ss_pred CCCCCEEEccCCCCccC--ChhhcCCCCCcEEEccccccCC
Q 047078 86 LLGLEILDLKNSLVREL--PVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 86 l~~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+++|+.|++++|.++.+ +..++++++|++|++++|.+.+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99999999999999854 3568999999999999998875
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=3.6e-14 Score=110.92 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=101.4
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCc---CC--cccCCCCCccEEEeecCCCcccCcc----
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY---LP--EGVGNLFNLHYLSVKNTNVKKIPKS---- 82 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---lp--~~~~~l~~L~~L~l~~n~~~~lp~~---- 82 (192)
..+++|+.|++++|.+ .......+..+++|++|++++|.+.. ++ ..+..+++|++|++++|+++.++..
T Consensus 142 ~~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp TBCSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hhccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 4688999999999998 66777777889999999999998752 32 2346788999999999998755542
Q ss_pred cCCCCCCCEEEccCCCCccC-ChhhcCC---CCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 83 IGNLLGLEILDLKNSLVREL-PVEIRNL---KKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~l-p~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
+..+++|+.|++++|.++.. |..+..+ ++|++|++++|.+.. +|. .+ .++|+.|+++.|....
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~---lp~--------~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ---VPK--------GL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS---CCS--------CC--CSCCSCEECCSCCCCS
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc---hhh--------hh--cCCCCEEECCCCcCCC
Confidence 46778999999999998854 7777766 689999999998873 332 11 2678888888777654
No 106
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=3.2e-13 Score=106.35 Aligned_cols=108 Identities=15% Similarity=0.270 Sum_probs=79.1
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCc-ccCCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLG 88 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~ 88 (192)
....+++|++|++.+|.+ ..+....+.++++|++|++++|.+..+|..+. ++|++|++++|.++.+|. .+..+++
T Consensus 73 ~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN 148 (332)
T ss_dssp TTTTCTTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred HhhCCCCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCcc
Confidence 356788999999999987 66666677888999999999998888886655 788888888888886665 4777888
Q ss_pred CCEEEccCCCCc---cCChhhcCCCCCcEEEcccccc
Q 047078 89 LEILDLKNSLVR---ELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 89 L~~L~l~~n~l~---~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
|+.|++++|.++ ..|..+..+ +|++|++++|.+
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888888888775 233334444 444444444443
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.45 E-value=8.9e-13 Score=108.45 Aligned_cols=104 Identities=22% Similarity=0.342 Sum_probs=44.6
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCE
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEI 91 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~ 91 (192)
..+++|+.|++.+|.+ ..+ ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.+++ +..+++|+.
T Consensus 218 ~~l~~L~~L~l~~n~l--~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 218 GILTNLDELSLNGNQL--KDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp GGCTTCCEEECCSSCC--CCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred cccCCCCEEECCCCCc--ccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 3445555555555544 221 122344445555554444443322 4444444444444444443332 334444444
Q ss_pred EEccCCCCccCChhhcCCCCCcEEEcccccc
Q 047078 92 LDLKNSLVRELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 92 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
|++++|.++.++. +..+++|+.|++++|.+
T Consensus 292 L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 292 LELNENQLEDISP-ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp EECCSSCCSCCGG-GGGCTTCSEEECCSSCC
T ss_pred EEcCCCcccCchh-hcCCCCCCEEECcCCcC
Confidence 4444444443332 33444444444444433
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.4e-13 Score=114.09 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=107.3
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhh-cCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASI-ANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGL 89 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L 89 (192)
...+++|+.|++++|.+ .......+ ..+++|+.|++++|.++.+|. ...+++|++|++++|.++.+|+.+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l--~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (487)
T ss_dssp GGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred hcCCCCCCEEECCCCCC--CCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCc
Confidence 46789999999999998 54444333 478999999999999997754 446999999999999999999999999999
Q ss_pred CEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeec
Q 047078 90 EILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLD 151 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 151 (192)
+.|++++|.++.+|..+..+++|+.|++++|.+... ..|..+..++.|+.+..
T Consensus 217 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~---------~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG---------TLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH---------HHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc---------chHHHHHhCCCCcEEec
Confidence 999999999999999999999999999999987621 34455566666666655
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=1.8e-13 Score=115.40 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=97.4
Q ss_pred ccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccc
Q 047078 42 LMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 42 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~ 121 (192)
.|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++++++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58999999999999987 99999999999999999999999999999999999999999998 89999999999999999
Q ss_pred cCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 122 YTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
+.+.. .|..+..+++|+.|+++.|......
T Consensus 520 l~~~~---------~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 520 LQQSA---------AIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CCSSS---------TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCC---------CcHHHhcCCCCCEEEecCCcCCCCc
Confidence 88630 1566789999999999999865543
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.44 E-value=9.4e-13 Score=108.32 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=35.8
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCE
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEI 91 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~ 91 (192)
..+++|++|++++|.+ ..++. +..+++|++|++++|.+..+++ +..+++|++|++++|.++.+++ +..+++|+.
T Consensus 65 ~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp GGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 3444444444444444 22222 3344444444444444443333 4444444444444444443332 344444444
Q ss_pred EEccCCCCc
Q 047078 92 LDLKNSLVR 100 (192)
Q Consensus 92 L~l~~n~l~ 100 (192)
|++++|.++
T Consensus 139 L~l~~n~l~ 147 (466)
T 1o6v_A 139 LELSSNTIS 147 (466)
T ss_dssp EEEEEEEEC
T ss_pred EECCCCccC
Confidence 444444333
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.2e-15 Score=111.99 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=69.3
Q ss_pred hhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLE 90 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~ 90 (192)
...+++|++|++++|.+ ..++ .+..+++|+.|++++|.++.+|..+..+++|++|++++|+++.+| .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l--~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI--EKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEE--SCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCC--cccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 45566677777777665 3333 345566677777777766666655555666777777777666554 456666677
Q ss_pred EEEccCCCCccCCh--hhcCCCCCcEEEccccccC
Q 047078 91 ILDLKNSLVRELPV--EIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 91 ~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~~~ 123 (192)
.|++++|.++.+|. .+..+++|++|++++|.+.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 77777776665543 4666677777777776654
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.2e-15 Score=112.00 Aligned_cols=140 Identities=20% Similarity=0.161 Sum_probs=109.2
Q ss_pred hhhhhhCCCcccEEEEeccCCCC----CccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcc
Q 047078 7 GALESIKHSKVRSVFLFNVDKLP----DSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKS 82 (192)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~ 82 (192)
.+........++.+.+.++.+.. ....+..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..
T Consensus 10 ~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~ 88 (198)
T 1ds9_A 10 AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENL 88 (198)
T ss_dssp HHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSH
T ss_pred HHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccch
Confidence 34445555666666666655410 1111225678999999999999999888 888999999999999999999988
Q ss_pred cCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 83 IGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
+..+++|+.|++++|.++.+| .+..+++|++|++++|.+... + ....+..+++|+++++..|...
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~---~------~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNW---G------EIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCH---H------HHHHHTTTTTCSEEEECSCHHH
T ss_pred hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCch---h------HHHHHhcCCCCCEEEecCCccc
Confidence 888899999999999999887 688999999999999988752 1 1135678889999988887643
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.42 E-value=6.1e-13 Score=109.45 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=80.8
Q ss_pred hhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCC
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGL 89 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L 89 (192)
....+++|++|++++|.+ ..++ .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l--~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSI--TDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCC--CCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCc--ccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 345678888888888887 4443 3567888888888888888765 777888888888888887664 7778888
Q ss_pred CEEEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 90 EILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+.|++++|.++.+| ++++++|++|++++|.+.+
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCccce
Confidence 88888888887765 6778888888888887765
No 114
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=3.6e-13 Score=105.34 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=107.1
Q ss_pred hhhCCCcccEEEEeccCCCCCcc---chh-hhcCCCccCEEEccCCCCCcC---Ccc-cCCCCCccEEEeecCCCcccC-
Q 047078 10 ESIKHSKVRSVFLFNVDKLPDSF---MNA-SIANFKLMKVLDLEDAPVDYL---PEG-VGNLFNLHYLSVKNTNVKKIP- 80 (192)
Q Consensus 10 ~~~~~~~L~~L~l~~n~~~~~~~---~~~-~~~~l~~L~~L~l~~n~i~~l---p~~-~~~l~~L~~L~l~~n~~~~lp- 80 (192)
....+++|+.|++++|.+ ... +.. .+..+++|++|++++|.++.+ +.. +..+++|++|++++|.++..+
T Consensus 168 ~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPE--LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TCCCCSSCCEEECCSCTT--CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HhccCCCCCEEECCCCCc--CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 456899999999999986 221 112 236899999999999999844 333 457899999999999998544
Q ss_pred -cccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCC
Q 047078 81 -KSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFG 158 (192)
Q Consensus 81 -~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 158 (192)
+.+..+++|+.|++++|.++.+|..+. ++|++|++++|++.+. | . +..+++|+++++..|....
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~---p--------~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN---P--------S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC---C--------C-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC---h--------h-HhhCCCCCEEeccCCCCCC
Confidence 456678999999999999999998876 8999999999999853 2 2 4788999999999987654
No 115
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.3e-12 Score=93.55 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=91.6
Q ss_pred ccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCccc-CcccCCCCCCCEEEccCCCCccCChh-hcCCCCCcEEEccc
Q 047078 42 LMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLEILDLKNSLVRELPVE-IRNLKKLRYLMVYK 119 (192)
Q Consensus 42 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~ 119 (192)
..+.+++++|.++.+|..+. .+|++|++++|+++.+ |..|..+++|+.|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46789999999999997764 8899999999999966 55789999999999999999988886 47999999999999
Q ss_pred cccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 120 YNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 120 n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
|++.+. + +..+..+++|+.|++..|...+..
T Consensus 88 N~l~~~---~-------~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSI---P-------RGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCC---C-------TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEe---C-------HHHhcCCCCCCEEEeCCCCCCCCc
Confidence 998853 2 234678899999999999887643
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.40 E-value=2.7e-12 Score=105.63 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=84.3
Q ss_pred hhhhhCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCC
Q 047078 8 ALESIKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLL 87 (192)
Q Consensus 8 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~ 87 (192)
++....+++|+.|++++|.+ ..++ +..+++|++|++++|.++.+| ++.+++|++|++++|+++.+| ++.++
T Consensus 57 ~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 57 MTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp CTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred ChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 34667889999999999987 4432 578899999999999988775 788999999999999988775 78889
Q ss_pred CCCEEEccCCCCccCChhhcCCCCCcEEEcccccc
Q 047078 88 GLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 88 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
+|+.|++++|.++.++ ++++++|++|++++|..
T Consensus 128 ~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK 160 (457)
T ss_dssp TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSC
T ss_pred cCCEEECCCCccceec--cccCCcCCEEECCCCCc
Confidence 9999999999888764 66777777777777743
No 117
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=102.50 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=45.4
Q ss_pred CcccEEEEeccCCCCCccchhhh--cCCCccCEEEccCCCCCc-CC----cccCCCCCccEEEeecCCCcccC-cccCCC
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASI--ANFKLMKVLDLEDAPVDY-LP----EGVGNLFNLHYLSVKNTNVKKIP-KSIGNL 86 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~-lp----~~~~~l~~L~~L~l~~n~~~~lp-~~~~~l 86 (192)
++|++|++.+|.+ .......+ ..+++|++|++++|.+.. .+ ..+..+++|++|++++|++..++ ..++.+
T Consensus 91 ~~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKI--TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCC--BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEe--ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3455555555554 22222222 344455555555554442 11 11233445555555555544222 344445
Q ss_pred CCCCEEEccCCCCcc---CChh--hcCCCCCcEEEcccccc
Q 047078 87 LGLEILDLKNSLVRE---LPVE--IRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 87 ~~L~~L~l~~n~l~~---lp~~--l~~l~~L~~L~l~~n~~ 122 (192)
++|+.|++++|.+.. ++.. +.++++|++|++++|.+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 555555555554321 2111 23444455555555444
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2.6e-12 Score=92.46 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=90.9
Q ss_pred cCEEEccCCCCCcCCcccCCCCCccEEEeecCCCccc-CcccCCCCCCCEEEccCCCCccCChhh-cCCCCCcEEEcccc
Q 047078 43 MKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKI-PKSIGNLLGLEILDLKNSLVRELPVEI-RNLKKLRYLMVYKY 120 (192)
Q Consensus 43 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~l-p~~~~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n 120 (192)
-+.+++++|.+..+|..+. .+|++|++++|+++.+ |..|..+++|+.|++++|.++.+|..+ .++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998765 8899999999999966 557899999999999999999998874 79999999999999
Q ss_pred ccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCCc
Q 047078 121 NYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGPG 160 (192)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 160 (192)
++... +. ..+..+++|+.|++..|...+..
T Consensus 92 ~l~~l---~~-------~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSI---PR-------GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCC---CT-------TTTTTCTTCSEEECCSSCBCTTB
T ss_pred cccee---CH-------HHhccccCCCEEEeCCCCccccc
Confidence 98852 22 33678999999999999877643
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=1.2e-13 Score=108.64 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=64.7
Q ss_pred hhCCCcccEEEEeccCCCCCcc-chhhhcCCCccCEEEccCCCCC-cCCcccCCCCCccEEEeecC-CCc--ccCcccCC
Q 047078 11 SIKHSKVRSVFLFNVDKLPDSF-MNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNT-NVK--KIPKSIGN 85 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n-~~~--~lp~~~~~ 85 (192)
...+++|+.|++++|.+ ... ....+..+++|+.|++++|.+. ..|..++.+++|++|++++| .++ .++..+..
T Consensus 89 ~~~~~~L~~L~L~~~~l--~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVI--EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CCCCBCCCEEECTTCEE--CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hccCCCCCEEEccCCCc--CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 34456666666666664 221 3334456666666676666665 44555666666666666666 455 24445556
Q ss_pred CCCCCEEEccCC-CCc--cCChhhcCCC-CCcEEEcccc
Q 047078 86 LLGLEILDLKNS-LVR--ELPVEIRNLK-KLRYLMVYKY 120 (192)
Q Consensus 86 l~~L~~L~l~~n-~l~--~lp~~l~~l~-~L~~L~l~~n 120 (192)
+++|+.|++++| .++ .++..+..++ +|++|++++|
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 666666666666 565 2455556666 6666666666
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=2.6e-12 Score=108.37 Aligned_cols=131 Identities=17% Similarity=0.184 Sum_probs=63.6
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEE
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILD 93 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~ 93 (192)
+++|+.|++++|.+ ..++. +.. +|+.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+.|+
T Consensus 99 l~~L~~L~Ls~N~l--~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRL--STLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCC--SCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred cCCCCEEEccCCCC--CCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEE
Confidence 45566666666654 22322 111 55555555555555444 34555555555555554443 234455555
Q ss_pred ccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhH----------------HHhhHHHhhcccccceeecCCCCCC
Q 047078 94 LKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEA----------------AAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 94 l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~----------------~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
+++|.++.+|. +. ++|+.|++++|.+..+..++... -..+|..+..+++|+.|++..|...
T Consensus 167 Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 167 VRNNQLTFLPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCCCCCCcch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 55555544444 32 44555555554444221111100 0013455566777788877777765
Q ss_pred CC
Q 047078 158 GP 159 (192)
Q Consensus 158 ~~ 159 (192)
..
T Consensus 244 ~~ 245 (571)
T 3cvr_A 244 SR 245 (571)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=3.9e-12 Score=102.09 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=96.6
Q ss_pred CcccEEEEeccCCCCCccch--hhhcCCCccCEEEccCCCCC------cCCcccCCCCCccEEEeecCCC-----cccCc
Q 047078 15 SKVRSVFLFNVDKLPDSFMN--ASIANFKLMKVLDLEDAPVD------YLPEGVGNLFNLHYLSVKNTNV-----KKIPK 81 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~--~~~~~l~~L~~L~l~~n~i~------~lp~~~~~l~~L~~L~l~~n~~-----~~lp~ 81 (192)
++|++|++++|.+....+.. ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67777888777761111111 23446778888888888877 2333677788888888888887 35677
Q ss_pred ccCCCCCCCEEEccCCCCcc-----CChhh--cCCCCCcEEEccccccCCCccCChhHHHhhHHHh-hcccccceeecCC
Q 047078 82 SIGNLLGLEILDLKNSLVRE-----LPVEI--RNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFI-DVFVEFHDFLDPA 153 (192)
Q Consensus 82 ~~~~l~~L~~L~l~~n~l~~-----lp~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~-~~l~~L~~l~~~~ 153 (192)
.+..+++|+.|++++|.++. +|..+ +++++|+.|++++|.+.. .....++..+ .++++|+.|++..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~------~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL------DAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH------HHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH------HHHHHHHHHHHhcCCCceEEEccC
Confidence 77788888888888888763 45555 347888888888887653 1122355555 5678999999988
Q ss_pred CCCCCCcc
Q 047078 154 NGKFGPGC 161 (192)
Q Consensus 154 ~~~~~~~~ 161 (192)
|......+
T Consensus 313 N~l~~~~~ 320 (386)
T 2ca6_A 313 NRFSEEDD 320 (386)
T ss_dssp SBSCTTSH
T ss_pred CcCCcchh
Confidence 88776553
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=7.8e-12 Score=105.44 Aligned_cols=100 Identities=13% Similarity=0.175 Sum_probs=81.4
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCC---
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGL--- 89 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L--- 89 (192)
.+++|+.|++++|.+ ..++ ..+++|+.|++++|.++.+|. +. ++|++|++++|+++.+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l--~~lp----~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~ 205 (571)
T 3cvr_A 138 LPALLEYINADNNQL--TMLP----ELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHS 205 (571)
T ss_dssp CCTTCCEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC--------
T ss_pred cCccccEEeCCCCcc--CcCC----CcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcc
Confidence 567788888888886 3333 257889999999998888887 55 889999999999998887 654 67
Q ss_pred ----CEEEccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 90 ----EILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 90 ----~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
+.|++++|.++.+|.+++.+++|+.|++++|.+++
T Consensus 206 ~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred cccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999999999999999999999999998875
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=9.1e-13 Score=103.59 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=59.3
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCC-CCC--cCCcccCCCCCccEEEeecC-CCc--ccCcccCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDA-PVD--YLPEGVGNLFNLHYLSVKNT-NVK--KIPKSIGN 85 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~--~lp~~~~~l~~L~~L~l~~n-~~~--~lp~~~~~ 85 (192)
..+++|++|++.+|.+ .......+..+++|++|++++| .++ .++..+..+++|++|++++| .++ .++..+..
T Consensus 115 ~~~~~L~~L~L~~~~l--~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp TTBCCCSEEECTTCBC--CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred hhCCCCCEEeCcCccc--CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 4556666666666654 3233333445666666666666 455 24444555666666666666 555 24444555
Q ss_pred CC-CCCEEEccCCC--Cc--cCChhhcCCCCCcEEEccccc
Q 047078 86 LL-GLEILDLKNSL--VR--ELPVEIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 86 l~-~L~~L~l~~n~--l~--~lp~~l~~l~~L~~L~l~~n~ 121 (192)
++ +|+.|++++|. ++ .+|..+.++++|+.|++++|.
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 55 66666666652 32 444445555666666666655
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.29 E-value=2.8e-11 Score=99.50 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=42.3
Q ss_pred CccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEcccc
Q 047078 41 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKY 120 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n 120 (192)
.+|++|++++|.++.+| .++.+++|++|++++|+++.+|... ++|+.|++++|.++.+| .++.+++|++|++++|
T Consensus 173 ~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence 34444444444444443 3455555555555555554443322 34555555555555555 3566666677777666
Q ss_pred ccCC
Q 047078 121 NYTA 124 (192)
Q Consensus 121 ~~~~ 124 (192)
.+.+
T Consensus 248 ~l~~ 251 (454)
T 1jl5_A 248 LLKT 251 (454)
T ss_dssp CCSS
T ss_pred cCCc
Confidence 6654
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=4.1e-11 Score=102.02 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=68.1
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEc
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDL 94 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l 94 (192)
++|+.|++.+|.+ ..++ ..+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l--~~lp----~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLP----ALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCC--SCCC----CCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCC--CCCC----CcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 6788888888876 3333 256788888888888877776 56778888888888777766 4566777777
Q ss_pred cCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 95 KNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 95 ~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
++|.++.+|.. +++|++|++++|.+.+
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSC
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCCC
Confidence 77777776653 3667777777776664
No 126
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.9e-11 Score=96.67 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=86.4
Q ss_pred cEEEEecc-CCCCCccchhhhcCCCccCEEEccC-CCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEEE
Q 047078 18 RSVFLFNV-DKLPDSFMNASIANFKLMKVLDLED-APVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEILD 93 (192)
Q Consensus 18 ~~L~l~~n-~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L~ 93 (192)
..+++.++ .+ ..++. +..+++|+.|++++ |.++.+| ..+..+.+|+.|++++|+++.+|+ .|..+++|+.|+
T Consensus 11 ~~v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 35677777 66 56665 67889999999996 9999777 568999999999999999996655 679999999999
Q ss_pred ccCCCCccCChhhcCCCCCcEEEccccccCC
Q 047078 94 LKNSLVRELPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 94 l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
|++|.++.+|..+.....|+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999999998876655559999999998864
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=2.8e-11 Score=103.03 Aligned_cols=77 Identities=21% Similarity=0.116 Sum_probs=44.8
Q ss_pred CCccEEEeecCCCcccCcccCCCCCCCEEEccCCCCccCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcc
Q 047078 64 FNLHYLSVKNTNVKKIPKSIGNLLGLEILDLKNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVF 143 (192)
Q Consensus 64 ~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l 143 (192)
++|++|++++|.++.+| ..+++|+.|++++|.++.+|. .+++|+.|++++|.+.. +|..+.++
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~-----------lp~~l~~l 283 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTR-----------LPESLIHL 283 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCS-----------CCGGGGGS
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCc-----------CCHHHhhc
Confidence 44555555555555554 233556666666666665554 44556666666665552 23445677
Q ss_pred cccceeecCCCCCC
Q 047078 144 VEFHDFLDPANGKF 157 (192)
Q Consensus 144 ~~L~~l~~~~~~~~ 157 (192)
++|+.|++..|...
T Consensus 284 ~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 284 SSETTVNLEGNPLS 297 (622)
T ss_dssp CTTCEEECCSCCCC
T ss_pred cccCEEEecCCCCC
Confidence 77777777777644
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=4e-11 Score=98.57 Aligned_cols=131 Identities=20% Similarity=0.226 Sum_probs=82.0
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCcccCCCCCCCEEEc
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPKSIGNLLGLEILDL 94 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~~L~~L~l 94 (192)
++|+.|++++|.+ ..++ ...++|++|++++|.++.+| .++.+++|++|++++|+++.+|..+ .+|+.|++
T Consensus 111 ~~L~~L~l~~n~l--~~l~----~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNL--KALS----DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCC--SCCC----SCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCcc--Cccc----CCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEEC
Confidence 4566666666655 2221 12257778888888777776 4777777888888887777666543 46777777
Q ss_pred cCCCCccCChhhcCCCCCcEEEccccccCCCccCCh---------hHHHhhHHHhhcccccceeecCCCCCC
Q 047078 95 KNSLVRELPVEIRNLKKLRYLMVYKYNYTAGATLAG---------EAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 95 ~~n~l~~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~---------~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
++|.++.+| +++++++|++|++++|.+.+....+. ..-..+| .+..+++|+++++..|...
T Consensus 181 ~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 181 GNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred cCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC
Confidence 777777766 56777777777777776654322211 0000123 2566777777777776544
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.24 E-value=6.3e-12 Score=100.88 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=51.4
Q ss_pred hCCCcccEEEEeccCCCCCc----cchhhhcCCCccCEEEccCCCCCc-----CCcccCCC---------CCccEEEeec
Q 047078 12 IKHSKVRSVFLFNVDKLPDS----FMNASIANFKLMKVLDLEDAPVDY-----LPEGVGNL---------FNLHYLSVKN 73 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~----~~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l---------~~L~~L~l~~ 73 (192)
..+++|++|++++|.+ .. .....+..+++|++|++++|.+.. ++..+..+ ++|++|++++
T Consensus 91 ~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAF--GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TTCTTCCEEECCSCCC--CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred hhCCcccEEECCCCcC--CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 3566667777766665 22 122233455666666666665541 11112222 4555555555
Q ss_pred CCCc--ccC---cccCCCCCCCEEEccCCCCc------cCChhhcCCCCCcEEEcccccc
Q 047078 74 TNVK--KIP---KSIGNLLGLEILDLKNSLVR------ELPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 74 n~~~--~lp---~~~~~l~~L~~L~l~~n~l~------~lp~~l~~l~~L~~L~l~~n~~ 122 (192)
|+++ .+| ..+..+++|+.|++++|.++ ..|..+.++++|+.|++++|.+
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 5553 222 23334445555555555444 1121344445555555555443
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=1e-11 Score=99.05 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=62.9
Q ss_pred chhhhhhCCCc-ccEEEEeccCCCCCccch----hhhcCCC-ccCEEEccCCCCCcC-CcccCCC-----CCccEEEeec
Q 047078 6 DGALESIKHSK-VRSVFLFNVDKLPDSFMN----ASIANFK-LMKVLDLEDAPVDYL-PEGVGNL-----FNLHYLSVKN 73 (192)
Q Consensus 6 ~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~l-p~~~~~l-----~~L~~L~l~~ 73 (192)
+.++.....+. |+.|++++|.+ ..... ..+..++ +|+.|++++|.+... +..+..+ ++|++|++++
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 34444444444 77777777765 33333 3444555 677777777766633 3334443 6666777776
Q ss_pred CCCcccCc-c----cCCC-CCCCEEEccCCCCccCCh-h----hcC-CCCCcEEEccccccC
Q 047078 74 TNVKKIPK-S----IGNL-LGLEILDLKNSLVRELPV-E----IRN-LKKLRYLMVYKYNYT 123 (192)
Q Consensus 74 n~~~~lp~-~----~~~l-~~L~~L~l~~n~l~~lp~-~----l~~-l~~L~~L~l~~n~~~ 123 (192)
|.++..+. . +..+ ++|+.|++++|.++..+. . +.. .++|++|++++|.+.
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 66663322 2 3333 566666666666664433 2 222 246666666666554
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.16 E-value=2.1e-10 Score=91.03 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=93.1
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCC-cCCc-ccCCCCCccE-EEeecCCCcccCc-ccCCCCCCC
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPE-GVGNLFNLHY-LSVKNTNVKKIPK-SIGNLLGLE 90 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~lp~-~~~~l~~L~~-L~l~~n~~~~lp~-~~~~l~~L~ 90 (192)
+++++|++++|.+ ..++...+.++++|++|++++|.+. .+|. .+..++++.. +.+..|+++.+++ .|..+++|+
T Consensus 30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 5788899999987 7777777888899999999998875 5654 4677777664 5566677876644 567788888
Q ss_pred EEEccCCCCccCChh-h-------------------------cCC-CCCcEEEccccccCCCccCC-------------h
Q 047078 91 ILDLKNSLVRELPVE-I-------------------------RNL-KKLRYLMVYKYNYTAGATLA-------------G 130 (192)
Q Consensus 91 ~L~l~~n~l~~lp~~-l-------------------------~~l-~~L~~L~l~~n~~~~~~~~~-------------~ 130 (192)
.+++++|.++.+|.. + ..+ ..++.|++++|.+..+..-. .
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 888888777655432 1 112 24556667666655321100 0
Q ss_pred hHHHhhH-HHhhcccccceeecCCCCCCCC
Q 047078 131 EAAAKLH-EFIDVFVEFHDFLDPANGKFGP 159 (192)
Q Consensus 131 ~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~ 159 (192)
..-..+| ..+..+++|+.|+++.|.....
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 0000123 3457888889998888875443
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=2.1e-10 Score=90.69 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=86.4
Q ss_pred CEEEccCC-CCCcCCcccCCCCCccEEEeec-CCCcccCc-ccCCCCCCCEEEccCCCCccCCh-hhcCCCCCcEEEccc
Q 047078 44 KVLDLEDA-PVDYLPEGVGNLFNLHYLSVKN-TNVKKIPK-SIGNLLGLEILDLKNSLVRELPV-EIRNLKKLRYLMVYK 119 (192)
Q Consensus 44 ~~L~l~~n-~i~~lp~~~~~l~~L~~L~l~~-n~~~~lp~-~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~ 119 (192)
..++.+++ .++.+|. +..+.+|+.|++++ |.++.+|+ .|..+++|+.|+|++|.++.+|+ .+.++++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 8999999 99999999999996 99997774 78999999999999999996665 578999999999999
Q ss_pred cccCCCccCChhHHHhhHHHhhcccccceeecCCCCCCCC
Q 047078 120 YNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKFGP 159 (192)
Q Consensus 120 n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 159 (192)
|++.. +|. ..+..+. |+.|.+..|...+.
T Consensus 90 N~l~~---~~~-------~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALES---LSW-------KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSC---CCS-------TTTCSCC-CCEEECCSSCCCCC
T ss_pred Cccce---eCH-------HHcccCC-ceEEEeeCCCccCC
Confidence 99985 332 2223344 99999999987765
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=4e-11 Score=95.56 Aligned_cols=110 Identities=14% Similarity=0.165 Sum_probs=57.6
Q ss_pred hCCC-cccEEEEeccCCCCCccchhhhcCC-----CccCEEEccCCCCCcCC-cc----cCCC-CCccEEEeecCCCccc
Q 047078 12 IKHS-KVRSVFLFNVDKLPDSFMNASIANF-----KLMKVLDLEDAPVDYLP-EG----VGNL-FNLHYLSVKNTNVKKI 79 (192)
Q Consensus 12 ~~~~-~L~~L~l~~n~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~lp-~~----~~~l-~~L~~L~l~~n~~~~l 79 (192)
..++ +|++|++++|.+ .......+..+ ++|++|++++|.++..+ .. +... ++|++|++++|+++..
T Consensus 47 ~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 4555 677777777765 33323333322 66777777777666333 22 2233 5666666666666533
Q ss_pred Cc-c----cCC-CCCCCEEEccCCCCc-----cCChhhcCCC-CCcEEEccccccC
Q 047078 80 PK-S----IGN-LLGLEILDLKNSLVR-----ELPVEIRNLK-KLRYLMVYKYNYT 123 (192)
Q Consensus 80 p~-~----~~~-l~~L~~L~l~~n~l~-----~lp~~l~~l~-~L~~L~l~~n~~~ 123 (192)
+. . +.. ..+|+.|++++|.++ .++..+..++ +|++|++++|.+.
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 32 1 222 245666666666655 2233334443 5666666665554
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.00 E-value=1.5e-10 Score=94.55 Aligned_cols=69 Identities=13% Similarity=0.001 Sum_probs=36.6
Q ss_pred cCCCCCCCEEEccCCCCc-cCChhhcC-----CCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 83 IGNLLGLEILDLKNSLVR-ELPVEIRN-----LKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~-~lp~~l~~-----l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
+..++.|+.|++++|.++ ..+..+.. .++|+.|++++|.+.. .....++..+..+++|+++++..|..
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~------~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD------SSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH------HHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh------hhHHHHHHHHHhCCCccEEECCCCCC
Confidence 334455555555555544 21222221 3455555555554431 12223566677788888888887764
Q ss_pred C
Q 047078 157 F 157 (192)
Q Consensus 157 ~ 157 (192)
.
T Consensus 411 ~ 411 (461)
T 1z7x_W 411 G 411 (461)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.99 E-value=2.1e-10 Score=93.70 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=55.5
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhc-----CCCccCEEEccCCCCCc-----CCcccCCCCCccEEEeecCCCccc--
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIA-----NFKLMKVLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTNVKKI-- 79 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~~l-- 79 (192)
..+++|++|++++|.+ .......+. ..++|+.|++++|.++. ++..+..+++|+.|++++|.++..
T Consensus 167 ~~~~~L~~L~L~~n~i--~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDI--NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHCTTCCEEECCSSBC--HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred hhCCCCCEEECcCCCc--chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 3456666666666664 221111111 24466666666666553 344445556666666666655421
Q ss_pred ---Ccc-cCCCCCCCEEEccCCCCcc-----CChhhcCCCCCcEEEcccccc
Q 047078 80 ---PKS-IGNLLGLEILDLKNSLVRE-----LPVEIRNLKKLRYLMVYKYNY 122 (192)
Q Consensus 80 ---p~~-~~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~~ 122 (192)
.+. +..+++|+.|++++|.++. ++..+.++++|++|++++|.+
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 111 2235556666666665553 444455555555555555544
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.95 E-value=2.3e-09 Score=84.93 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=67.7
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccC-CCCCcCCc-ccCCC-CCccEEEeecCCCcccCcccCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED-APVDYLPE-GVGNL-FNLHYLSVKNTNVKKIPKSIGNLLG 88 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~lp~-~~~~l-~~L~~L~l~~n~~~~lp~~~~~l~~ 88 (192)
..+++|+.|++.+|.+ ..++...+....++..+++.. +.+..+|. .+..+ ..++.|++++|+++.+|.......+
T Consensus 101 ~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp CCCTTCCEEEEEEECC--SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhcccccccccccccc--ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 3455566666666655 333333333334444444433 34444442 23333 3467777888888777777666677
Q ss_pred CCEEEccC-CCCccCChh-hcCCCCCcEEEccccccCC
Q 047078 89 LEILDLKN-SLVRELPVE-IRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 89 L~~L~l~~-n~l~~lp~~-l~~l~~L~~L~l~~n~~~~ 124 (192)
|+.+++.+ |.++.+|.+ +..+++|+.|++++|+++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 88888764 567778765 4678888888888888764
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=7.4e-10 Score=88.78 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=88.6
Q ss_pred CcccEEEEeccCCCCCcc-chhhhcCCCccCEEEccCCCCCcCC-ccc-----CCCCCccEEEeecCCCcc-----cCcc
Q 047078 15 SKVRSVFLFNVDKLPDSF-MNASIANFKLMKVLDLEDAPVDYLP-EGV-----GNLFNLHYLSVKNTNVKK-----IPKS 82 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~~lp-~~~-----~~l~~L~~L~l~~n~~~~-----lp~~ 82 (192)
++|++|++++|.+ ... ...+...+++|+.|++++|.++..+ ..+ ...+.|++|++++|.++. ++..
T Consensus 101 ~~L~~L~Ls~n~l--~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQL--DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCC--CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEecCCCC--CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 5778888888876 222 1222234567888888888776221 222 245678888888888762 4444
Q ss_pred cCCCCCCCEEEccCCCCcc-----CChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 83 IGNLLGLEILDLKNSLVRE-----LPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
+..++.|+.|++++|.++. ++..+...++|+.|++++|.+.. .....+...+...+.|++|+++.|...
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~------~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD------TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH------HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH------HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 5667788888888888762 24456667788888888886653 222234555667788888888888744
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=88.03 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=100.5
Q ss_pred CCCcccEEEEeccCCCCCccchhhhc-----CCCccCEEEccCCCCCc-CCcc-cCCCCCccEEEeecCCCccc-Cccc-
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIA-----NFKLMKVLDLEDAPVDY-LPEG-VGNLFNLHYLSVKNTNVKKI-PKSI- 83 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~-lp~~-~~~l~~L~~L~l~~n~~~~l-p~~~- 83 (192)
-.++|+.|++++|.+ .......+. ..++|+.|++++|.+.. .... ...+.+|+.|++++|.++.. ...+
T Consensus 70 ~~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGVRM--TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTSCC--CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHhhCCEEEecCCCC--CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 356799999999997 433333332 33799999999999973 2222 33467899999999998732 2222
Q ss_pred ----CCCCCCCEEEccCCCCcc-----CChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCC
Q 047078 84 ----GNLLGLEILDLKNSLVRE-----LPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPAN 154 (192)
Q Consensus 84 ----~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 154 (192)
...+.|+.|++++|.++. ++..+..+++|++|++++|.+.. .....+...+...+.|++|+++.|
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~------~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD------EGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH------HHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc------HHHHHHHHHHhcCCCcCeEECCCC
Confidence 356889999999999863 45556788999999999997753 222335667778889999999998
Q ss_pred CCCC
Q 047078 155 GKFG 158 (192)
Q Consensus 155 ~~~~ 158 (192)
....
T Consensus 222 ~i~~ 225 (372)
T 3un9_A 222 GAGD 225 (372)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 7543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=9.8e-09 Score=80.61 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=80.3
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCC------------------------------
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGN------------------------------ 62 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~------------------------------ 62 (192)
+++|+++.+.+ .+ ..+....|.++++|+.++++.|.+..+++. |..
T Consensus 100 ~~~L~~l~L~~-~i--~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KI--KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TC--CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-cc--cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 78888888888 65 677888888888899888888876433321 222
Q ss_pred ------------------------------------------------CCCccEEEeecCCCcccCc-ccCCCCCCCEEE
Q 047078 63 ------------------------------------------------LFNLHYLSVKNTNVKKIPK-SIGNLLGLEILD 93 (192)
Q Consensus 63 ------------------------------------------------l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L~ 93 (192)
+.+|+.+++++|+++.+|. .|..+.+|+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 4556666666666666655 456666677777
Q ss_pred ccCCCCccCChh-hcCCCCCc-EEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 94 LKNSLVRELPVE-IRNLKKLR-YLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 94 l~~n~l~~lp~~-l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
+.+| ++.++.. +.++++|+ .+++.+ .+.. ++ +..+.++++|+.+.+..+..
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~---I~-------~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA---IE-------FGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE---EC-------TTTTTTCTTEEEEEECSSCC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceE---Ec-------hhhhhCCccCCEEEeCCCcc
Confidence 7665 5555443 45666676 666655 3332 11 13356677777777655543
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=7.9e-09 Score=86.88 Aligned_cols=137 Identities=10% Similarity=-0.001 Sum_probs=85.9
Q ss_pred CCCcccEEEEeccCCCCCcc-chhhhcCCCccCEEEcc----CCCCCcCC------cccCCCCCccEEEeecCC--Cc-c
Q 047078 13 KHSKVRSVFLFNVDKLPDSF-MNASIANFKLMKVLDLE----DAPVDYLP------EGVGNLFNLHYLSVKNTN--VK-K 78 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~----~n~i~~lp------~~~~~l~~L~~L~l~~n~--~~-~ 78 (192)
.+++|+.|.+..+.+ ... ...+...+++|+.|+++ .|.++..| ..+..+++|++|+++.|. ++ .
T Consensus 376 ~~~~L~~L~l~~~~l--~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 376 GCQELEYMAVYVSDI--TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HCTTCSEEEEEESCC--CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred hCccCeEEEeecCCc--cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 466667776655554 111 11121236677777775 44555432 124457778888876533 44 3
Q ss_pred cCcccC-CCCCCCEEEccCCCCc--cCChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 79 IPKSIG-NLLGLEILDLKNSLVR--ELPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 79 lp~~~~-~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
.+..+. .+++|+.|++++|.++ .++..+..+++|+.|++++|.+... ..+.....+++|+.|++..+.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~---------~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER---------AIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH---------HHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH---------HHHHHHHhcCccCeeECcCCc
Confidence 333333 4788999999988887 4555567889999999999876421 233445678899999998888
Q ss_pred CCCCc
Q 047078 156 KFGPG 160 (192)
Q Consensus 156 ~~~~~ 160 (192)
....+
T Consensus 525 it~~~ 529 (592)
T 3ogk_B 525 ASMTG 529 (592)
T ss_dssp CCTTC
T ss_pred CCHHH
Confidence 55543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=3.5e-08 Score=77.45 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=75.6
Q ss_pred CCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc-ccCCCCCCC-
Q 047078 14 HSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLE- 90 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~- 90 (192)
..++..+.+.++-. ..-...+...+++|+.+++++|.++.+|+. |..+.+|+.+++..| ++.+++ .|..+.+|+
T Consensus 201 ~~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 45556666655432 111122223467777777777777777644 667777777777776 665555 567777777
Q ss_pred EEEccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceee
Q 047078 91 ILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFL 150 (192)
Q Consensus 91 ~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~ 150 (192)
.+.+.+ .++.++. .+.++++|+.+++.+|.+..+ +. ..+.++++|+.++
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I---~~-------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL---GD-------ELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE---CT-------TTTCTTCCCCEEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc---ch-------hhhcCCcchhhhc
Confidence 777766 6665543 466777777777777666532 21 2345666666665
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.62 E-value=4e-08 Score=82.59 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=33.3
Q ss_pred CCCcccEEEEeccCCCC--CccchhhhcCCCccCEEEccCCCCC-----cCCcccCCCCCccEEEeecCCCccc
Q 047078 13 KHSKVRSVFLFNVDKLP--DSFMNASIANFKLMKVLDLEDAPVD-----YLPEGVGNLFNLHYLSVKNTNVKKI 79 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~--~~~~~~~~~~l~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~l 79 (192)
.+++|++|++.+|.+.. ..+....+..+++|+.|++++|.++ .++..+..+++|++|++++|.+..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 56667777776665410 0112233445566666666666554 1222233455555665555544433
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=6.3e-08 Score=70.00 Aligned_cols=116 Identities=9% Similarity=0.074 Sum_probs=76.3
Q ss_pred hhcCCCccCEEEccCC-CCCc-----CCcccCCCCCccEEEeecCCCcc-----cCcccCCCCCCCEEEccCCCCcc---
Q 047078 36 SIANFKLMKVLDLEDA-PVDY-----LPEGVGNLFNLHYLSVKNTNVKK-----IPKSIGNLLGLEILDLKNSLVRE--- 101 (192)
Q Consensus 36 ~~~~l~~L~~L~l~~n-~i~~-----lp~~~~~l~~L~~L~l~~n~~~~-----lp~~~~~l~~L~~L~l~~n~l~~--- 101 (192)
.....++|+.|++++| .+.. +...+...+.|++|++++|.+.. +...+...+.|+.|++++|.++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3446677888888877 7762 33445566778888888887762 33344556778888888888762
Q ss_pred --CChhhcCCCCCcEEEc--cccccCCCccCChhHHHhhHHHhhcccccceeecCCCCCC
Q 047078 102 --LPVEIRNLKKLRYLMV--YKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGKF 157 (192)
Q Consensus 102 --lp~~l~~l~~L~~L~l--~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 157 (192)
+...+...++|+.|++ ++|.+.. .....+.+.+...+.|++|++..+...
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~------~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGN------NVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCH------HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCH------HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445667778888888 6676543 223334556666778888887766543
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=3.6e-08 Score=71.32 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=85.5
Q ss_pred hhCCCcccEEEEecc-CCCCCcc----chhhhcCCCccCEEEccCCCCCc-----CCcccCCCCCccEEEeecCCCcc--
Q 047078 11 SIKHSKVRSVFLFNV-DKLPDSF----MNASIANFKLMKVLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTNVKK-- 78 (192)
Q Consensus 11 ~~~~~~L~~L~l~~n-~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~~-- 78 (192)
....++|++|++.+| .+ .+. ....+...++|++|++++|.+.. +...+...+.|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i--~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNI--PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTC--CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCC--CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 356789999999999 87 332 22233467899999999999972 33445566889999999999883
Q ss_pred ---cCcccCCCCCCCEEEc--cCCCCc-c----CChhhcCCCCCcEEEccccccC
Q 047078 79 ---IPKSIGNLLGLEILDL--KNSLVR-E----LPVEIRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 79 ---lp~~~~~l~~L~~L~l--~~n~l~-~----lp~~l~~l~~L~~L~l~~n~~~ 123 (192)
+...+...+.|+.|++ ++|.++ . +...+...++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566777889999999 889987 2 3445667789999999998764
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.47 E-value=9e-08 Score=80.40 Aligned_cols=131 Identities=16% Similarity=0.084 Sum_probs=64.9
Q ss_pred CCcccEEEEeccCCCCCccc-hhhhcCCCccCEEEcc--C----CCCCcCCc------ccCCCCCccEEEeecCCCc-cc
Q 047078 14 HSKVRSVFLFNVDKLPDSFM-NASIANFKLMKVLDLE--D----APVDYLPE------GVGNLFNLHYLSVKNTNVK-KI 79 (192)
Q Consensus 14 ~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~L~~L~l~--~----n~i~~lp~------~~~~l~~L~~L~l~~n~~~-~l 79 (192)
+++|+.|.+..+.+ .... ..+...+++|+.|+++ + +.++..|. .+..+++|+.|++++ .++ ..
T Consensus 371 ~~~L~~L~~~~~~l--~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 371 CPKLESVLYFCRQM--TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp CTTCCEEEEEESCC--CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred chhHHHHHHhcCCc--CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 45555555544443 1111 1111245666666665 2 33432221 133445566666644 333 22
Q ss_pred CcccCC-CCCCCEEEccCCCCc-cCChhh-cCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCCC
Q 047078 80 PKSIGN-LLGLEILDLKNSLVR-ELPVEI-RNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANGK 156 (192)
Q Consensus 80 p~~~~~-l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 156 (192)
+..+.. +++|+.|++++|.++ ..+..+ ..+++|+.|++++|.+... .....+..+++|+.|++..+..
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~---------~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK---------ALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH---------HHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH---------HHHHHHHhCCCCCEEeeeCCCC
Confidence 233333 566777777777665 222233 4567777777777765320 1112334567777777766654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.35 E-value=1.2e-07 Score=79.53 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=39.0
Q ss_pred cCCCccCEEEccCCCCC-cCCcccC-CCCCccEEEeecC-CCcc--cCcccCCCCCCCEEEccCCCCcc-CChhh----c
Q 047078 38 ANFKLMKVLDLEDAPVD-YLPEGVG-NLFNLHYLSVKNT-NVKK--IPKSIGNLLGLEILDLKNSLVRE-LPVEI----R 107 (192)
Q Consensus 38 ~~l~~L~~L~l~~n~i~-~lp~~~~-~l~~L~~L~l~~n-~~~~--lp~~~~~l~~L~~L~l~~n~l~~-lp~~l----~ 107 (192)
..+++|+.|++++|.+. ..+..+. .+++|+.|++.+| .++. ++.....+++|+.|++++|.++. .+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 34555666666655554 2222332 3555666666555 2331 33333345555555555555431 11111 2
Q ss_pred CCCCCcEEEccccc
Q 047078 108 NLKKLRYLMVYKYN 121 (192)
Q Consensus 108 ~l~~L~~L~l~~n~ 121 (192)
.+++|+.|++++|.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 34455555555543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=1.2e-06 Score=69.96 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=29.0
Q ss_pred CCCCCEEEccCCCCc-cCChhhc---CCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 86 LLGLEILDLKNSLVR-ELPVEIR---NLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 86 l~~L~~L~l~~n~l~-~lp~~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
+++|+.|.+++|.+. ..+..+. .+++|+.|+++.|.+.. .....++..+.++++|+.|++..|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d------~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD------EGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH------HHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh------HHHHHHHhhcccCCcceEEECCCCc
Confidence 455555555555544 2222222 34455555555544332 1111233344556666666665443
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=4.3e-07 Score=69.41 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCCCccEEEeecCCCcc---cCcccCCCCCCCEEEccCCCCccCChhhcCCC--CCcEEEccccccCCCccCChhHHHhh
Q 047078 62 NLFNLHYLSVKNTNVKK---IPKSIGNLLGLEILDLKNSLVRELPVEIRNLK--KLRYLMVYKYNYTAGATLAGEAAAKL 136 (192)
Q Consensus 62 ~l~~L~~L~l~~n~~~~---lp~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~ 136 (192)
.+++|++|++++|+++. +|..+..+++|+.|+|++|.++.+ ..+..+. +|+.|++.+|.+.+ .++.. ..-.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~--~~~~~-~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD--TFRDQ-STYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGG--GCSSH-HHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcc--ccCcc-hhHH
Confidence 35556666666666553 233445666677777777766654 2333333 67777777776654 22211 0112
Q ss_pred HHHhhcccccceee
Q 047078 137 HEFIDVFVEFHDFL 150 (192)
Q Consensus 137 ~~~~~~l~~L~~l~ 150 (192)
...+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 23455666666664
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=2.2e-06 Score=65.47 Aligned_cols=77 Identities=21% Similarity=0.167 Sum_probs=47.0
Q ss_pred CCCccCEEEccCCCCCcCC---cccCCCCCccEEEeecCCCcccCcccCCCC--CCCEEEccCCCCc-cCCh-------h
Q 047078 39 NFKLMKVLDLEDAPVDYLP---EGVGNLFNLHYLSVKNTNVKKIPKSIGNLL--GLEILDLKNSLVR-ELPV-------E 105 (192)
Q Consensus 39 ~l~~L~~L~l~~n~i~~lp---~~~~~l~~L~~L~l~~n~~~~lp~~~~~l~--~L~~L~l~~n~l~-~lp~-------~ 105 (192)
.+++|+.|++++|.+..++ ..+..+++|+.|++++|+++.+ ..+..+. +|+.|++.+|.++ .+|. -
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5667777777777766432 3345677777777777777644 2222222 6777777777766 4442 1
Q ss_pred hcCCCCCcEEE
Q 047078 106 IRNLKKLRYLM 116 (192)
Q Consensus 106 l~~l~~L~~L~ 116 (192)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45667777665
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=3.1e-06 Score=67.45 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=60.5
Q ss_pred CCCccCEEEccCC--C------CCcCCccc--CCCCCccEEEeecCCCc-ccCccc---CCCCCCCEEEccCCCCcc---
Q 047078 39 NFKLMKVLDLEDA--P------VDYLPEGV--GNLFNLHYLSVKNTNVK-KIPKSI---GNLLGLEILDLKNSLVRE--- 101 (192)
Q Consensus 39 ~l~~L~~L~l~~n--~------i~~lp~~~--~~l~~L~~L~l~~n~~~-~lp~~~---~~l~~L~~L~l~~n~l~~--- 101 (192)
.+++|+.|+++.+ . +..+...+ ..+++|++|++.+|.+. ..+..+ ..++.|+.|+++.|.++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 6788999887531 1 11221222 34789999999999887 333222 357899999999999873
Q ss_pred --CChhhcCCCCCcEEEccccccCC
Q 047078 102 --LPVEIRNLKKLRYLMVYKYNYTA 124 (192)
Q Consensus 102 --lp~~l~~l~~L~~L~l~~n~~~~ 124 (192)
++..+.++++|+.|++++|.+..
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhhcccCCcceEEECCCCcCCH
Confidence 44455678999999999997653
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.84 E-value=6.1e-05 Score=60.77 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=38.5
Q ss_pred ccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCc-ccCCCCCCCEEEcc
Q 047078 17 VRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLEILDLK 95 (192)
Q Consensus 17 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~~L~l~ 95 (192)
|+++.+.+ .+ ..+....|.++++|+.++++.|.++.+|........|+.+.+..+ ++.++. .|..+++|+.+.+.
T Consensus 159 L~~i~lp~-~l--~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 159 VQEIVFPS-TL--EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECCT-TC--CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred ceEEEeCC-Cc--cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 55555543 22 444555555666666666666665555544333455555555432 443333 34455555555554
Q ss_pred C
Q 047078 96 N 96 (192)
Q Consensus 96 ~ 96 (192)
.
T Consensus 235 ~ 235 (401)
T 4fdw_A 235 E 235 (401)
T ss_dssp T
T ss_pred C
Confidence 3
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=1.3e-05 Score=57.24 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=52.1
Q ss_pred CccCEEEccCCCCCcC-CcccCCCCCccEEEeecCC-Cc-ccCcccCCC----CCCCEEEccCCC-Cc-cCChhhcCCCC
Q 047078 41 KLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTN-VK-KIPKSIGNL----LGLEILDLKNSL-VR-ELPVEIRNLKK 111 (192)
Q Consensus 41 ~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~-~~-~lp~~~~~l----~~L~~L~l~~n~-l~-~lp~~l~~l~~ 111 (192)
..|+.|+++++.++.. -..+..+++|+.|++++|. ++ .--..+..+ ++|+.|++++|. ++ .--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3577788887777632 2446677788888888875 66 222334443 468888888774 66 22234667788
Q ss_pred CcEEEccccc
Q 047078 112 LRYLMVYKYN 121 (192)
Q Consensus 112 L~~L~l~~n~ 121 (192)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888774
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.64 E-value=0.00029 Score=56.78 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=83.0
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCc-----ccCc-ccC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVK-----KIPK-SIG 84 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~-----~lp~-~~~ 84 (192)
..+++|+.+.+.++- ..+....|.+ .+|+.+.+. +.+..++ ..|..+.+|+.+.+.++.+. .++. .|.
T Consensus 223 ~~~~~L~~l~l~~~l---~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 223 LKTSQLKTIEIPENV---STIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTCTTCCCEECCTTC---CEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred hCCCCCCEEecCCCc---cCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 467788888887653 5666667766 678888884 4466665 44777888888888877654 3443 577
Q ss_pred CCCCCCEEEccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCCC
Q 047078 85 NLLGLEILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPANG 155 (192)
Q Consensus 85 ~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 155 (192)
.+++|+.+.+. +.++.++. .+.++++|+.+.+..+ +.. +.. ..+.++ +|+.+.+..+.
T Consensus 298 ~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~---I~~-------~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 298 GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ---INF-------SAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE---ECT-------TSSSSS-CCCEEEECCSS
T ss_pred CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE---EcH-------HhCCCC-CCCEEEEcCCC
Confidence 78888888887 44666655 3557788888887544 322 211 224555 67777776654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=4.1e-05 Score=54.70 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=63.3
Q ss_pred CcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCC-CCcC-CcccCCC----CCccEEEeecCC-Cc-ccCcccCCC
Q 047078 15 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYL-PEGVGNL----FNLHYLSVKNTN-VK-KIPKSIGNL 86 (192)
Q Consensus 15 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~l-p~~~~~l----~~L~~L~l~~n~-~~-~lp~~~~~l 86 (192)
-+|+.|+++++.+ .+..-..+.++++|+.|++++|. ++.- -..+..+ ++|+.|++++|. ++ .--..+..+
T Consensus 61 ~~L~~LDLs~~~I--td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCI--MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCC--CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCc--cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4699999999997 44443445789999999999994 7731 1345554 479999999986 87 222456789
Q ss_pred CCCCEEEccCCC-Cc
Q 047078 87 LGLEILDLKNSL-VR 100 (192)
Q Consensus 87 ~~L~~L~l~~n~-l~ 100 (192)
++|+.|+++++. ++
T Consensus 139 ~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCCEEEEESCTTCC
T ss_pred CCCCEEECCCCCCCC
Confidence 999999999985 55
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.23 E-value=0.0024 Score=50.92 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=59.5
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcc-cCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
..++.|+++.+.++- ..+....+.++.+|+.+.+. +.+..+++. |..+.+|+.+.+..+ ++.+.. .|..+.+|
T Consensus 262 ~~c~~L~~i~lp~~~---~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV---VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTCSSCCEEECCTTC---CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eecccccEEeccccc---ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 345566666665444 34555555666667766664 344555533 556667777776543 444443 46666777
Q ss_pred CEEEccCCCCccCCh-hhcCCCCCcEEEcccc
Q 047078 90 EILDLKNSLVRELPV-EIRNLKKLRYLMVYKY 120 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n 120 (192)
+.+.+..+ ++.+.. .+.++.+|+.+++.++
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 77776543 555544 3556677777766654
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.0012 Score=44.59 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred EEEeecCCCc--ccCcccCCCCCCCEEEccCCCCccCChh-hcCCCCCcEEEccccccC
Q 047078 68 YLSVKNTNVK--KIPKSIGNLLGLEILDLKNSLVRELPVE-IRNLKKLRYLMVYKYNYT 123 (192)
Q Consensus 68 ~L~l~~n~~~--~lp~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~~~ 123 (192)
..+-+++.++ .+|..+. .+++.|+|++|.++.+|.+ +..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444455554 4554321 2466666666666666654 345666777777776653
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.0014 Score=44.21 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=15.8
Q ss_pred ccEEEeecCCCcccCcc-cCCCCCCCEEEccCCCC
Q 047078 66 LHYLSVKNTNVKKIPKS-IGNLLGLEILDLKNSLV 99 (192)
Q Consensus 66 L~~L~l~~n~~~~lp~~-~~~l~~L~~L~l~~n~l 99 (192)
|+.|++++|+++.+|.. |..+++|+.|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444432 33444555555555543
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.95 E-value=0.0015 Score=47.44 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=72.3
Q ss_pred cCCCccCEEEccCC-CCCc-----CCcccCCCCCccEEEeecCCCc-----ccCcccCCCCCCCEEEccCCCCc-c----
Q 047078 38 ANFKLMKVLDLEDA-PVDY-----LPEGVGNLFNLHYLSVKNTNVK-----KIPKSIGNLLGLEILDLKNSLVR-E---- 101 (192)
Q Consensus 38 ~~l~~L~~L~l~~n-~i~~-----lp~~~~~l~~L~~L~l~~n~~~-----~lp~~~~~l~~L~~L~l~~n~l~-~---- 101 (192)
..-+.|+.|++++| .|.. +-+.+..-..|+.|++++|++. .+-..+..-..|+.|+|+.|.++ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 35577888888875 6651 3344555677888888888877 22233445577899999999887 2
Q ss_pred CChhhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCC
Q 047078 102 LPVEIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPAN 154 (192)
Q Consensus 102 lp~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 154 (192)
+-..+..-+.|+.|++++|... .+.......+.+.+..-+.|..+.+..+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~---~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQS---VLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSC---CCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCc---CcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2223455567999999865321 1223333345556666678888876543
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.83 E-value=0.0028 Score=50.58 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=74.6
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
..+..++.+...... +....+.++.+|+.+.+..+ ++.+++ .+..+.+|+.+++.. .++.++. .|..+.+|
T Consensus 273 ~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTC
T ss_pred ccccccceeccCcee-----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCC
Confidence 355666666655443 45666778899999998765 666654 477889999999875 4666654 68889999
Q ss_pred CEEEccCCCCccCCh-hhcCCCCCcEEEcccc
Q 047078 90 EILDLKNSLVRELPV-EIRNLKKLRYLMVYKY 120 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n 120 (192)
+.+.+..+ ++.++. .+.++.+|+.+++..+
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 99999776 666655 4678899999988654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.77 E-value=0.0077 Score=47.58 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=58.9
Q ss_pred CCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCCC
Q 047078 13 KHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLE 90 (192)
Q Consensus 13 ~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~ 90 (192)
.+.+++.+.+..+- ..+....+.++..|+.+.+..+ ++.++ ..+.....|+.+.+.. .++.++. .|..+.+|+
T Consensus 215 ~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccceeeeccce---eEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 44556666654443 3455555566677777776554 44444 2355566666666644 2444443 456667777
Q ss_pred EEEccCCCCccCCh-hhcCCCCCcEEEccc
Q 047078 91 ILDLKNSLVRELPV-EIRNLKKLRYLMVYK 119 (192)
Q Consensus 91 ~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~ 119 (192)
.+.+.++.++.++. .+.++.+|+.+.+..
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc
Confidence 77776666665544 345666777776643
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.69 E-value=0.0051 Score=49.07 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=72.6
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
..++.|+.+.+... + ..+....|.++.+|+.+.+..+ ++.++ ..|..+.+|+.+.+..+ ++.+.. .|..+.+|
T Consensus 285 ~~c~~L~~i~l~~~-i--~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFSSR-I--TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccCCCc-c--cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 46788999988643 3 6788888999999999999864 66666 44788999999999754 666665 68899999
Q ss_pred CEEEccCCCCccCChhhcCCCCCcEEEcccc
Q 047078 90 EILDLKNSLVRELPVEIRNLKKLRYLMVYKY 120 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n 120 (192)
+.+++.++... . ..+.....|+.+.+..+
T Consensus 360 ~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 360 NNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred CEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence 99999886432 1 34566777887776654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.56 E-value=0.025 Score=44.56 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=75.7
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCc-ccCCCCCccEEEeecCCCcccCc-ccCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGL 89 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L 89 (192)
..+..|+.+.+.++- ..+....+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++. .|..+.+|
T Consensus 237 ~~~~~L~~i~lp~~v---~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 237 YGMKALDEIAIPKNV---TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTCSSCCEEEECTTC---CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cCCccceEEEcCCCc---cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 456778888887653 5677777788888888888644 555653 46778889999988888886665 67788889
Q ss_pred CEEEccCCCCccCCh-hhcCCCCCcEEEccc
Q 047078 90 EILDLKNSLVRELPV-EIRNLKKLRYLMVYK 119 (192)
Q Consensus 90 ~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~ 119 (192)
+.+.+..+ ++.+.. .+.++.+|+.+.+..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 99988653 665554 466788888877654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.47 E-value=0.0094 Score=47.48 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=90.9
Q ss_pred hCCCcccEEEEeccCCCCCccchhhhcCCCccCEEEccCCCCCcCCcccCCCCCccEEEeecCCCcccCc-ccCCCCCCC
Q 047078 12 IKHSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTNVKKIPK-SIGNLLGLE 90 (192)
Q Consensus 12 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~lp~-~~~~l~~L~ 90 (192)
..+..++.+.+..+. ..+....+..+..++.+....+.+.. ..+.....|+.+.+..+ ++.++. .|..+.+|+
T Consensus 250 ~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 250 YGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccceeEEcCCCc---ceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCC
Confidence 567889999988776 46777778888999998877654321 34678889999998764 666655 688899999
Q ss_pred EEEccCCCCccCCh-hhcCCCCCcEEEccccccCCCccCChhHHHhhHHHhhcccccceeecCCC
Q 047078 91 ILDLKNSLVRELPV-EIRNLKKLRYLMVYKYNYTAGATLAGEAAAKLHEFIDVFVEFHDFLDPAN 154 (192)
Q Consensus 91 ~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 154 (192)
.+++.. .++.++. .+.++.+|+.+.+..+ +.. +.. ..+.++.+|+.+.+..+
T Consensus 324 ~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~---I~~-------~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 324 SIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRK---IGA-------NAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCE---ECT-------TTBTTCTTCCEEEEEGG
T ss_pred EEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccE---ehH-------HHhhCCCCCCEEEECCC
Confidence 999975 4776655 5778999999998765 332 222 23567788888877554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.29 E-value=0.0026 Score=46.10 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=74.7
Q ss_pred hCCCcccEEEEecc-CCCCCccc----hhhhcCCCccCEEEccCCCCCc-----CCcccCCCCCccEEEeecCCCc----
Q 047078 12 IKHSKVRSVFLFNV-DKLPDSFM----NASIANFKLMKVLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTNVK---- 77 (192)
Q Consensus 12 ~~~~~L~~L~l~~n-~~~~~~~~----~~~~~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~---- 77 (192)
..-+.|++|++.++ .+ .+.. ......=+.|+.|++++|.+.. +-+.+..=..|++|++++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~i--gd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRV--SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSS--CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred hcCCCccEEECCCCCCC--CHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 34578999999986 66 3222 2233455789999999999982 2233445578999999999988
Q ss_pred -ccCcccCCCCCCCEEEccCC---CCc-----cCChhhcCCCCCcEEEccccc
Q 047078 78 -KIPKSIGNLLGLEILDLKNS---LVR-----ELPVEIRNLKKLRYLMVYKYN 121 (192)
Q Consensus 78 -~lp~~~~~l~~L~~L~l~~n---~l~-----~lp~~l~~l~~L~~L~l~~n~ 121 (192)
.+-..+..-..|+.|++++| .+. .+...+..-++|+.|++..|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23344556677999999865 344 233345566889999987653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.84 E-value=44 Score=20.68 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=27.1
Q ss_pred CccchhhhcCCCccCEEEccCCCCCcCC-cccCCCCCccEEEeecC
Q 047078 30 DSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNT 74 (192)
Q Consensus 30 ~~~~~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n 74 (192)
..+....|.++.+|+.+.+..+ ++.+. ..|..+.+|+.+.+...
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4555666667777777777654 34443 33666777777776554
Done!