Query 047079
Match_columns 296
No_of_seqs 322 out of 1850
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.6E-17 5.4E-22 128.2 8.4 80 71-153 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 8.5E-17 2.9E-21 119.2 3.6 70 81-154 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 2.5E-15 8.4E-20 104.4 4.6 51 102-152 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 8E-15 2.7E-19 108.0 6.0 51 102-153 14-64 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 8.3E-15 2.8E-19 106.5 5.8 52 102-154 13-64 (69)
6 2ect_A Ring finger protein 126 99.5 1.3E-14 4.3E-19 108.0 6.0 52 102-154 14-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 9.2E-15 3.2E-19 110.3 4.6 51 102-152 14-75 (81)
8 2ecm_A Ring finger and CHY zin 99.4 1.1E-13 3.9E-18 95.8 5.1 50 102-152 4-54 (55)
9 3dpl_R Ring-box protein 1; ubi 99.4 4.1E-14 1.4E-18 112.4 3.1 50 102-152 36-100 (106)
10 1v87_A Deltex protein 2; ring- 99.4 1.4E-13 4.7E-18 109.6 5.2 51 103-154 25-95 (114)
11 3ng2_A RNF4, snurf, ring finge 99.4 1.2E-13 4E-18 100.6 3.8 51 102-153 9-63 (71)
12 2ea6_A Ring finger protein 4; 99.4 1.4E-13 4.7E-18 99.4 3.8 50 102-152 14-67 (69)
13 2xeu_A Ring finger protein 4; 99.4 2.3E-13 7.8E-18 96.8 3.8 50 103-153 3-56 (64)
14 2djb_A Polycomb group ring fin 99.3 9.3E-13 3.2E-17 96.6 4.8 50 102-154 14-63 (72)
15 2d8s_A Cellular modulator of i 99.3 1.1E-12 3.7E-17 99.1 5.0 51 102-154 14-71 (80)
16 1chc_A Equine herpes virus-1 r 99.3 1.1E-12 3.9E-17 94.7 4.8 48 102-152 4-51 (68)
17 2ecn_A Ring finger protein 141 99.3 4.4E-13 1.5E-17 97.5 2.3 48 102-154 14-61 (70)
18 4a0k_B E3 ubiquitin-protein li 99.3 9.7E-14 3.3E-18 112.1 -1.6 51 102-152 47-111 (117)
19 2d8t_A Dactylidin, ring finger 99.3 1.3E-12 4.4E-17 95.6 3.4 47 102-152 14-60 (71)
20 2ct2_A Tripartite motif protei 99.3 2.7E-12 9.3E-17 97.0 5.1 52 102-154 14-69 (88)
21 2yur_A Retinoblastoma-binding 99.2 5.3E-12 1.8E-16 93.2 5.1 49 102-153 14-64 (74)
22 2ct0_A Non-SMC element 1 homol 99.2 7.4E-12 2.5E-16 93.1 5.5 50 102-154 14-65 (74)
23 2ysl_A Tripartite motif-contai 99.2 6E-12 2.1E-16 92.0 4.2 49 102-154 19-70 (73)
24 4ayc_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 103.5 3.7 46 103-152 53-98 (138)
25 4ap4_A E3 ubiquitin ligase RNF 99.2 1E-11 3.5E-16 100.2 4.0 51 102-153 6-60 (133)
26 2ecy_A TNF receptor-associated 99.2 1.3E-11 4.4E-16 88.8 4.1 48 102-153 14-62 (66)
27 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.7E-16 92.8 3.3 47 102-152 14-60 (81)
28 1g25_A CDK-activating kinase a 99.2 2.1E-11 7.1E-16 87.5 4.4 51 103-153 3-55 (65)
29 3lrq_A E3 ubiquitin-protein li 99.2 1.2E-11 4.1E-16 96.6 3.2 48 102-152 21-69 (100)
30 2ecw_A Tripartite motif-contai 99.1 2.6E-11 8.9E-16 90.6 4.6 48 102-153 18-71 (85)
31 2y43_A E3 ubiquitin-protein li 99.1 2.3E-11 7.9E-16 94.4 3.4 49 102-153 21-69 (99)
32 2ckl_A Polycomb group ring fin 99.1 2.7E-11 9.3E-16 95.6 3.8 49 102-153 14-62 (108)
33 1t1h_A Gspef-atpub14, armadill 99.1 3.2E-11 1.1E-15 89.4 3.9 48 102-153 7-55 (78)
34 2ckl_B Ubiquitin ligase protei 99.1 3.3E-11 1.1E-15 102.0 4.5 75 75-152 22-101 (165)
35 2ysj_A Tripartite motif-contai 99.1 4.6E-11 1.6E-15 85.0 4.3 42 102-147 19-63 (63)
36 4ap4_A E3 ubiquitin ligase RNF 99.1 4.3E-11 1.5E-15 96.5 4.1 51 102-153 71-125 (133)
37 2ecv_A Tripartite motif-contai 99.1 7.8E-11 2.7E-15 88.0 4.5 48 102-153 18-71 (85)
38 2egp_A Tripartite motif-contai 99.1 2.4E-11 8.2E-16 90.0 0.8 48 102-153 11-65 (79)
39 3fl2_A E3 ubiquitin-protein li 99.0 9.6E-11 3.3E-15 94.6 3.7 48 102-153 51-99 (124)
40 2ecj_A Tripartite motif-contai 99.0 1.2E-10 4.3E-15 81.0 3.2 42 102-147 14-58 (58)
41 1z6u_A NP95-like ring finger p 99.0 2.3E-10 7.9E-15 95.9 3.9 49 102-154 77-126 (150)
42 1jm7_A BRCA1, breast cancer ty 99.0 2.8E-10 9.5E-15 89.7 4.1 47 103-153 21-70 (112)
43 3ztg_A E3 ubiquitin-protein li 99.0 3.2E-10 1.1E-14 86.5 4.1 48 102-152 12-61 (92)
44 3hct_A TNF receptor-associated 98.9 2.7E-10 9.4E-15 91.3 3.0 48 102-153 17-65 (118)
45 3l11_A E3 ubiquitin-protein li 98.9 8.7E-11 3E-15 93.6 -0.3 46 103-152 15-61 (115)
46 1rmd_A RAG1; V(D)J recombinati 98.9 4.5E-10 1.6E-14 89.5 3.4 47 103-153 23-70 (116)
47 2kr4_A Ubiquitin conjugation f 98.9 7.1E-10 2.4E-14 84.2 3.1 47 102-152 13-59 (85)
48 2kre_A Ubiquitin conjugation f 98.9 9.2E-10 3.1E-14 86.2 3.5 48 102-153 28-75 (100)
49 1bor_A Transcription factor PM 98.9 6.2E-10 2.1E-14 77.8 2.1 47 102-155 5-51 (56)
50 3knv_A TNF receptor-associated 98.9 7.5E-10 2.6E-14 91.9 2.9 48 102-153 30-78 (141)
51 1wgm_A Ubiquitin conjugation f 98.9 1.1E-09 3.7E-14 85.5 3.3 48 102-153 21-69 (98)
52 1e4u_A Transcriptional repress 98.8 1.8E-09 6.1E-14 80.9 4.2 52 102-154 10-63 (78)
53 2vje_A E3 ubiquitin-protein li 98.8 2.3E-09 7.7E-14 77.1 4.5 49 102-152 7-56 (64)
54 3k1l_B Fancl; UBC, ring, RWD, 98.8 7.9E-10 2.7E-14 103.7 1.8 53 101-153 306-373 (381)
55 2y1n_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 101.7 5.2 47 103-153 332-379 (389)
56 1jm7_B BARD1, BRCA1-associated 98.8 1.5E-09 5.1E-14 86.8 2.3 46 102-152 21-66 (117)
57 2vje_B MDM4 protein; proto-onc 98.8 3.5E-09 1.2E-13 75.8 3.6 49 102-152 6-55 (63)
58 1wim_A KIAA0161 protein; ring 98.6 1.4E-08 4.9E-13 77.9 3.7 48 102-150 4-61 (94)
59 3hcs_A TNF receptor-associated 98.6 1.2E-08 4.2E-13 86.4 3.0 48 102-153 17-65 (170)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.4E-08 4.8E-13 78.3 2.9 48 102-152 6-62 (94)
61 2c2l_A CHIP, carboxy terminus 98.6 1.7E-08 6E-13 90.9 3.5 47 102-152 207-254 (281)
62 4ic3_A E3 ubiquitin-protein li 98.6 5E-09 1.7E-13 77.2 -0.2 43 102-152 23-66 (74)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.3E-08 8E-13 71.1 3.1 47 102-152 5-58 (60)
64 2f42_A STIP1 homology and U-bo 98.4 6.4E-08 2.2E-12 83.4 2.7 47 102-152 105-152 (179)
65 2ea5_A Cell growth regulator w 98.4 2.1E-07 7E-12 67.6 3.6 44 102-153 14-58 (68)
66 2ecg_A Baculoviral IAP repeat- 98.4 6.8E-08 2.3E-12 71.2 1.0 43 103-153 25-68 (75)
67 2bay_A PRE-mRNA splicing facto 98.4 1.2E-07 4.1E-12 67.5 2.2 47 104-153 4-50 (61)
68 2yho_A E3 ubiquitin-protein li 98.4 6.5E-08 2.2E-12 72.3 0.6 43 103-153 18-61 (79)
69 3htk_C E3 SUMO-protein ligase 98.3 1.4E-07 4.7E-12 85.7 2.6 48 102-152 180-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.1 6.6E-07 2.3E-11 84.5 1.2 43 102-152 294-337 (345)
71 3nw0_A Non-structural maintena 98.0 3.5E-06 1.2E-10 75.6 4.7 49 103-154 180-230 (238)
72 3vk6_A E3 ubiquitin-protein li 98.0 4.5E-06 1.5E-10 64.8 3.9 45 105-152 3-48 (101)
73 2lri_C Autoimmune regulator; Z 95.8 0.0065 2.2E-07 43.6 3.4 47 102-152 11-61 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.01 3.5E-07 45.2 2.7 34 103-137 3-36 (101)
75 2ko5_A Ring finger protein Z; 93.4 0.08 2.7E-06 40.4 4.1 47 102-153 27-73 (99)
76 1we9_A PHD finger family prote 90.2 0.073 2.5E-06 37.3 0.7 48 102-150 5-58 (64)
77 3lqh_A Histone-lysine N-methyl 90.2 0.13 4.4E-06 44.0 2.3 47 104-151 3-64 (183)
78 1wil_A KIAA1045 protein; ring 87.7 0.3 1E-05 36.5 2.5 34 102-137 14-47 (89)
79 2lv9_A Histone-lysine N-methyl 87.4 0.23 7.8E-06 38.0 1.8 45 102-148 27-74 (98)
80 2l5u_A Chromodomain-helicase-D 86.9 0.25 8.4E-06 34.5 1.6 44 102-149 10-57 (61)
81 1f62_A Transcription factor WS 86.7 0.26 8.9E-06 32.8 1.6 44 105-149 2-49 (51)
82 3o36_A Transcription intermedi 86.5 0.22 7.4E-06 42.2 1.4 46 102-151 3-52 (184)
83 3u5n_A E3 ubiquitin-protein li 86.3 0.2 6.9E-06 43.3 1.0 46 102-151 6-55 (207)
84 2k16_A Transcription initiatio 86.1 0.14 4.6E-06 37.1 -0.1 50 102-152 17-70 (75)
85 2ysm_A Myeloid/lymphoid or mix 83.9 0.39 1.4E-05 37.2 1.6 46 102-148 6-55 (111)
86 1mm2_A MI2-beta; PHD, zinc fin 83.8 0.27 9.2E-06 34.2 0.6 46 102-151 8-57 (61)
87 1wep_A PHF8; structural genomi 83.6 0.6 2.1E-05 34.0 2.4 48 102-151 11-64 (79)
88 2yql_A PHD finger protein 21A; 83.0 0.18 6.1E-06 34.5 -0.7 44 102-149 8-55 (56)
89 1wew_A DNA-binding family prot 82.5 0.3 1E-05 35.7 0.3 49 102-151 15-73 (78)
90 1fp0_A KAP-1 corepressor; PHD 82.3 0.88 3E-05 34.3 2.9 45 102-150 24-72 (88)
91 2xb1_A Pygopus homolog 2, B-ce 81.7 0.25 8.5E-06 38.3 -0.3 49 104-152 4-63 (105)
92 1wem_A Death associated transc 81.6 0.32 1.1E-05 35.2 0.3 47 103-151 16-71 (76)
93 3o70_A PHD finger protein 13; 80.6 0.32 1.1E-05 34.7 -0.1 46 102-149 18-66 (68)
94 2kgg_A Histone demethylase jar 80.2 0.84 2.9E-05 30.6 2.0 44 105-148 4-52 (52)
95 3v43_A Histone acetyltransfera 79.4 0.73 2.5E-05 35.9 1.7 45 105-149 63-111 (112)
96 1xwh_A Autoimmune regulator; P 78.4 0.39 1.3E-05 33.9 -0.2 44 102-149 7-54 (66)
97 2puy_A PHD finger protein 21A; 75.9 0.54 1.8E-05 32.4 -0.0 46 102-151 4-53 (60)
98 3shb_A E3 ubiquitin-protein li 75.8 0.64 2.2E-05 34.0 0.4 44 105-149 28-76 (77)
99 2ro1_A Transcription intermedi 75.6 0.73 2.5E-05 39.3 0.7 44 103-150 2-49 (189)
100 3m62_A Ubiquitin conjugation f 73.2 1.7 6E-05 45.7 2.9 47 102-152 890-937 (968)
101 2e6r_A Jumonji/ARID domain-con 73.1 0.51 1.7E-05 35.7 -0.8 48 102-150 15-66 (92)
102 2vpb_A Hpygo1, pygopus homolog 73.0 2.4 8.3E-05 29.8 2.8 35 102-136 7-42 (65)
103 1wen_A Inhibitor of growth fam 72.7 2.1 7.1E-05 30.7 2.4 45 102-151 15-66 (71)
104 2lbm_A Transcriptional regulat 72.6 3.6 0.00012 33.6 4.1 44 102-149 62-116 (142)
105 2cs3_A Protein C14ORF4, MY039 72.5 3.9 0.00013 30.3 3.8 39 102-140 14-52 (93)
106 2klu_A T-cell surface glycopro 72.0 6.5 0.00022 27.9 4.7 28 20-47 7-34 (70)
107 2ri7_A Nucleosome-remodeling f 71.5 0.76 2.6E-05 38.2 -0.2 47 102-150 7-59 (174)
108 1weu_A Inhibitor of growth fam 69.6 3 0.0001 31.4 2.8 45 102-151 35-86 (91)
109 3v43_A Histone acetyltransfera 69.5 5.3 0.00018 30.8 4.3 45 103-148 5-62 (112)
110 2rsd_A E3 SUMO-protein ligase 68.8 0.53 1.8E-05 33.4 -1.5 46 103-149 10-64 (68)
111 2e6s_A E3 ubiquitin-protein li 68.5 1.5 5.2E-05 31.9 0.9 45 104-149 27-76 (77)
112 1wee_A PHD finger family prote 68.4 0.87 3E-05 32.5 -0.4 48 102-151 15-67 (72)
113 4gne_A Histone-lysine N-methyl 67.5 3.7 0.00012 31.9 3.0 46 101-151 13-63 (107)
114 1nla_A Transcriptional repress 67.5 2.6 8.9E-05 29.7 1.9 18 238-255 6-23 (64)
115 1baz_A ARC repressor; transcri 67.5 2 6.8E-05 28.9 1.3 17 239-255 7-23 (53)
116 2yt5_A Metal-response element- 66.7 3.2 0.00011 28.7 2.3 49 102-150 5-61 (66)
117 2l43_A N-teminal domain from h 65.8 1.7 5.9E-05 32.4 0.8 50 102-151 24-76 (88)
118 3asl_A E3 ubiquitin-protein li 65.7 1.9 6.5E-05 30.7 1.0 44 105-149 20-68 (70)
119 1wev_A Riken cDNA 1110020M19; 65.2 1.2 4.1E-05 33.2 -0.2 49 103-151 16-73 (88)
120 3i2d_A E3 SUMO-protein ligase 64.2 4.7 0.00016 38.0 3.6 47 103-153 249-300 (371)
121 3qoq_A Alginate and motility r 63.3 2 6.8E-05 30.8 0.7 19 237-255 17-35 (69)
122 4fo9_A E3 SUMO-protein ligase 62.7 5.4 0.00018 37.4 3.7 47 103-153 215-266 (360)
123 2cu8_A Cysteine-rich protein 2 61.1 6.9 0.00024 27.4 3.3 39 103-152 9-47 (76)
124 3ask_A E3 ubiquitin-protein li 60.8 2.2 7.6E-05 37.5 0.6 45 104-149 175-224 (226)
125 3ql9_A Transcriptional regulat 60.7 7.5 0.00026 31.1 3.7 44 102-149 56-110 (129)
126 2dj7_A Actin-binding LIM prote 59.9 8.3 0.00028 27.5 3.6 39 103-152 15-53 (80)
127 1x4k_A Skeletal muscle LIM-pro 59.8 10 0.00036 25.9 4.0 38 104-152 6-44 (72)
128 1iml_A CRIP, cysteine rich int 59.1 7.4 0.00025 27.2 3.1 37 105-152 2-38 (76)
129 3o7a_A PHD finger protein 13 v 56.3 1.9 6.5E-05 28.7 -0.4 41 108-149 8-51 (52)
130 2ysm_A Myeloid/lymphoid or mix 55.7 2.5 8.7E-05 32.4 0.1 46 105-151 56-105 (111)
131 2kwj_A Zinc finger protein DPF 55.6 10 0.00036 29.2 3.7 33 104-137 2-41 (114)
132 3t7l_A Zinc finger FYVE domain 55.4 8.8 0.0003 28.5 3.1 35 103-137 20-54 (90)
133 1x61_A Thyroid receptor intera 55.1 12 0.0004 25.7 3.6 39 103-152 5-44 (72)
134 1g47_A Pinch protein; LIM doma 54.7 13 0.00046 25.7 3.9 41 103-153 11-51 (77)
135 1z60_A TFIIH basal transcripti 54.1 4.5 0.00015 28.0 1.2 42 104-147 16-58 (59)
136 3c6w_A P28ING5, inhibitor of g 53.6 3.1 0.00011 28.6 0.3 42 103-149 9-57 (59)
137 2vnf_A ING 4, P29ING4, inhibit 53.6 2.9 0.0001 28.8 0.1 42 103-149 10-58 (60)
138 1joc_A EEA1, early endosomal a 53.5 9.2 0.00031 30.2 3.1 34 103-136 69-102 (125)
139 2jo1_A Phospholemman; FXYD1, N 53.4 16 0.00054 26.1 3.9 34 15-48 8-41 (72)
140 1y02_A CARP2, FYVE-ring finger 53.1 2.4 8.2E-05 33.6 -0.4 47 104-150 20-66 (120)
141 2ku3_A Bromodomain-containing 52.7 12 0.00041 26.6 3.3 48 102-149 15-65 (71)
142 2yw8_A RUN and FYVE domain-con 52.7 11 0.00037 27.4 3.1 35 102-136 18-52 (82)
143 1wyh_A SLIM 2, skeletal muscle 52.7 12 0.0004 25.6 3.3 40 103-153 5-45 (72)
144 1z2q_A LM5-1; membrane protein 52.6 11 0.00037 27.5 3.2 36 102-137 20-55 (84)
145 1vfy_A Phosphatidylinositol-3- 52.1 11 0.00039 26.6 3.2 32 104-135 12-43 (73)
146 1x63_A Skeletal muscle LIM-pro 51.7 16 0.00055 25.7 4.0 41 103-153 15-55 (82)
147 3f6q_B LIM and senescent cell 51.6 17 0.00057 24.6 3.9 41 103-153 11-51 (72)
148 1zbd_B Rabphilin-3A; G protein 51.5 9.1 0.00031 30.7 2.8 34 102-135 54-88 (134)
149 2g6q_A Inhibitor of growth pro 51.5 3.5 0.00012 28.6 0.3 45 102-149 10-59 (62)
150 2co8_A NEDD9 interacting prote 51.1 12 0.00042 26.6 3.3 40 103-153 15-54 (82)
151 2l8s_A Integrin alpha-1; trans 50.4 39 0.0013 22.9 5.3 15 20-34 7-21 (54)
152 1wfk_A Zinc finger, FYVE domai 50.0 12 0.00041 27.7 3.1 36 102-137 8-43 (88)
153 1x4l_A Skeletal muscle LIM-pro 49.2 17 0.00059 24.9 3.7 39 103-152 5-46 (72)
154 1x4u_A Zinc finger, FYVE domai 48.4 13 0.00045 27.0 3.1 32 102-133 13-44 (84)
155 1weo_A Cellulose synthase, cat 48.3 25 0.00086 26.4 4.5 51 102-152 15-69 (93)
156 2d8y_A Eplin protein; LIM doma 48.1 20 0.00067 25.9 4.0 40 103-153 15-54 (91)
157 1dvp_A HRS, hepatocyte growth 47.1 11 0.00037 32.4 2.8 34 103-136 161-194 (220)
158 1a7i_A QCRP2 (LIM1); LIM domai 47.1 8.9 0.00031 27.1 1.9 40 103-153 7-46 (81)
159 2l4z_A DNA endonuclease RBBP8, 46.9 12 0.0004 29.2 2.7 39 103-152 61-99 (123)
160 1x68_A FHL5 protein; four-and- 46.9 21 0.00071 24.8 3.9 39 103-152 5-46 (76)
161 2kwj_A Zinc finger protein DPF 46.9 3 0.0001 32.4 -0.8 44 105-149 60-107 (114)
162 3zyq_A Hepatocyte growth facto 46.4 12 0.00039 32.5 2.9 35 103-137 164-198 (226)
163 2knc_A Integrin alpha-IIB; tra 45.9 47 0.0016 22.4 5.2 13 20-32 10-22 (54)
164 2dar_A PDZ and LIM domain prot 45.0 20 0.00069 25.8 3.6 38 103-152 25-62 (90)
165 1v6g_A Actin binding LIM prote 44.3 24 0.00082 24.8 3.9 38 104-153 16-53 (81)
166 1x62_A C-terminal LIM domain p 44.1 18 0.00061 25.4 3.2 38 103-152 15-52 (79)
167 2d8x_A Protein pinch; LIM doma 44.1 24 0.00083 23.9 3.8 39 103-153 5-43 (70)
168 2cor_A Pinch protein; LIM doma 43.8 16 0.00056 25.8 2.9 40 102-153 14-53 (79)
169 3kv5_D JMJC domain-containing 43.6 3.5 0.00012 40.2 -1.0 46 103-150 37-88 (488)
170 1x64_A Alpha-actinin-2 associa 43.1 22 0.00076 25.5 3.6 39 103-153 25-63 (89)
171 1zfo_A LAsp-1; LIM domain, zin 42.7 13 0.00043 21.9 1.8 28 104-134 4-31 (31)
172 2knc_B Integrin beta-3; transm 42.6 26 0.00087 25.5 3.8 23 23-46 11-33 (79)
173 1nyp_A Pinch protein; LIM doma 42.3 13 0.00045 25.0 2.1 38 103-152 5-42 (66)
174 2cur_A Skeletal muscle LIM-pro 41.9 26 0.00087 23.7 3.6 38 103-152 5-42 (69)
175 3mjh_B Early endosome antigen 41.8 3.5 0.00012 25.4 -0.9 17 103-119 5-21 (34)
176 2d8v_A Zinc finger FYVE domain 41.6 15 0.0005 26.1 2.2 30 102-136 7-37 (67)
177 3mpx_A FYVE, rhogef and PH dom 40.9 5.7 0.0002 37.3 0.0 36 103-138 375-410 (434)
178 2k9j_B Integrin beta-3; transm 39.9 49 0.0017 21.1 4.4 25 23-48 10-34 (43)
179 2k1a_A Integrin alpha-IIB; sin 39.7 63 0.0022 20.6 4.9 14 20-33 8-21 (42)
180 2d8z_A Four and A half LIM dom 39.6 28 0.00096 23.5 3.5 38 103-152 5-42 (70)
181 2l3k_A Rhombotin-2, linker, LI 39.1 15 0.0005 28.4 2.2 37 105-151 10-46 (123)
182 2jp3_A FXYD domain-containing 38.6 16 0.00056 25.8 2.1 33 15-47 9-41 (67)
183 2egq_A FHL1 protein; LIM domai 38.3 27 0.00094 24.1 3.4 39 103-152 15-57 (77)
184 2o35_A Hypothetical protein DU 38.1 11 0.00038 28.9 1.2 12 128-139 42-53 (105)
185 3fyb_A Protein of unknown func 37.6 11 0.00039 28.7 1.2 12 128-139 41-52 (104)
186 1u9p_A PARC; unknown function; 37.2 13 0.00044 29.4 1.5 18 238-255 17-34 (120)
187 2cup_A Skeletal muscle LIM-pro 37.1 44 0.0015 24.2 4.5 38 104-152 6-44 (101)
188 3a1b_A DNA (cytosine-5)-methyl 36.9 19 0.00066 29.8 2.6 43 102-148 78-132 (159)
189 1x6a_A LIMK-2, LIM domain kina 36.9 22 0.00076 24.9 2.7 37 104-152 16-52 (81)
190 3kqi_A GRC5, PHD finger protei 36.3 6.1 0.00021 28.2 -0.5 45 104-150 11-61 (75)
191 2pv0_B DNA (cytosine-5)-methyl 35.6 21 0.00073 33.7 3.0 45 102-149 92-147 (386)
192 3arc_H Photosystem II reaction 34.5 66 0.0022 22.5 4.6 23 13-35 19-41 (65)
193 2zxe_G FXYD10, phospholemman-l 33.9 15 0.00052 26.5 1.3 33 15-47 11-43 (74)
194 1mnt_A MNT repressor; transcri 33.8 15 0.00052 26.5 1.3 17 239-255 4-20 (76)
195 2jmo_A Parkin; IBR, E3 ligase, 33.1 4.9 0.00017 29.2 -1.5 19 124-144 55-73 (80)
196 1j2o_A FLIN2, fusion of rhombo 33.0 44 0.0015 25.2 4.0 38 104-152 4-41 (114)
197 1wig_A KIAA1808 protein; LIM d 32.5 43 0.0015 23.1 3.6 38 103-152 5-42 (73)
198 2k21_A Potassium voltage-gated 32.0 67 0.0023 25.6 4.9 26 22-47 53-78 (138)
199 2dlo_A Thyroid receptor-intera 31.9 47 0.0016 23.1 3.8 38 103-152 15-52 (81)
200 2ehe_A Four and A half LIM dom 31.8 30 0.001 24.2 2.7 38 104-152 16-54 (82)
201 1x3h_A Leupaxin; paxillin fami 31.0 56 0.0019 22.6 4.1 38 104-153 16-53 (80)
202 2xjy_A Rhombotin-2; oncoprotei 30.6 37 0.0013 26.0 3.3 37 105-151 68-104 (131)
203 1rut_X Flinc4, fusion protein 30.6 38 0.0013 28.0 3.5 38 105-152 71-108 (188)
204 2rgt_A Fusion of LIM/homeobox 30.5 39 0.0014 27.3 3.6 39 104-152 66-104 (169)
205 2zet_C Melanophilin; complex, 29.4 27 0.00093 28.5 2.3 32 102-134 67-100 (153)
206 1m3v_A FLIN4, fusion of the LI 29.4 39 0.0013 25.8 3.1 39 102-151 4-42 (122)
207 2jne_A Hypothetical protein YF 28.5 23 0.00078 27.0 1.5 40 104-152 33-72 (101)
208 2ct7_A Ring finger protein 31; 28.1 7 0.00024 28.6 -1.4 17 121-137 45-61 (86)
209 2gmg_A Hypothetical protein PF 27.9 13 0.00045 28.7 0.1 23 124-151 72-94 (105)
210 2kog_A Vesicle-associated memb 26.6 64 0.0022 25.1 3.9 14 1-14 4-17 (119)
211 2pk7_A Uncharacterized protein 26.3 16 0.00056 25.9 0.4 21 134-154 1-21 (69)
212 2fiy_A Protein FDHE homolog; F 25.9 9.6 0.00033 34.9 -1.2 47 103-150 182-231 (309)
213 2iyb_E Testin, TESS, TES; LIM 25.7 52 0.0018 21.9 3.0 38 104-152 3-43 (65)
214 2l2t_A Receptor tyrosine-prote 25.7 1.3E+02 0.0045 19.3 4.6 6 25-30 12-17 (44)
215 2xqn_T Testin, TESS; metal-bin 25.7 56 0.0019 24.8 3.5 45 103-152 30-74 (126)
216 1zza_A Stannin, AG8_1; helix, 25.6 1.1E+02 0.0037 22.0 4.6 7 42-48 31-37 (90)
217 2cuq_A Four and A half LIM dom 25.3 48 0.0016 22.9 2.8 37 104-152 16-52 (80)
218 2ay0_A Bifunctional PUTA prote 25.1 17 0.00058 24.7 0.3 26 240-265 4-32 (58)
219 2jtn_A LIM domain-binding prot 25.0 47 0.0016 27.2 3.1 48 101-154 85-132 (182)
220 3arc_T Photosystem II reaction 24.7 59 0.002 19.6 2.6 19 26-44 5-23 (32)
221 2lcq_A Putative toxin VAPC6; P 23.7 25 0.00087 28.5 1.1 22 124-151 137-158 (165)
222 2cpg_A REPA protein, transcrip 23.5 27 0.00093 21.6 1.0 15 240-254 3-17 (45)
223 1b8t_A Protein (CRP1); LIM dom 22.8 58 0.002 26.9 3.2 39 103-152 115-153 (192)
224 2kwv_A RAD30 homolog B, DNA po 22.7 44 0.0015 21.9 1.9 24 238-262 17-40 (48)
225 2jrp_A Putative cytoplasmic pr 22.7 45 0.0015 24.4 2.2 40 104-152 3-42 (81)
226 2rgt_A Fusion of LIM/homeobox 22.4 69 0.0023 25.8 3.6 45 102-152 32-76 (169)
227 1b8t_A Protein (CRP1); LIM dom 21.9 62 0.0021 26.7 3.2 39 104-153 8-46 (192)
228 2jny_A Uncharacterized BCR; st 21.6 18 0.00062 25.5 -0.1 20 134-153 3-22 (67)
229 2kdx_A HYPA, hydrogenase/ureas 21.5 37 0.0013 26.1 1.6 26 118-150 73-99 (119)
230 1wd2_A Ariadne-1 protein homol 21.5 12 0.00043 25.6 -1.0 35 104-138 7-45 (60)
231 2jvx_A NF-kappa-B essential mo 21.4 18 0.00062 21.2 -0.2 12 141-152 3-14 (28)
232 2jtn_A LIM domain-binding prot 20.5 79 0.0027 25.8 3.6 40 103-153 60-99 (182)
233 2gpe_A Bifunctional protein PU 20.3 30 0.001 22.3 0.8 26 240-265 4-32 (52)
234 1jb0_I Photosystem 1 reaction 20.1 1.3E+02 0.0045 18.8 3.6 27 19-45 9-35 (38)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=128.18 Aligned_cols=80 Identities=30% Similarity=0.650 Sum_probs=68.7
Q ss_pred CCCCCCCCCHHHHhhCCcccccchhhhhcccCCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcC
Q 047079 71 DSPANPGLHPSLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD 150 (296)
Q Consensus 71 ~~~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~ 150 (296)
......|++++.|++||.+.+..... ....+..|+||++.|..++.++.++ |+|.||..||+.|+..+.+||+||+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 44567799999999999998875432 2335678999999999999899998 99999999999999999999999998
Q ss_pred CCC
Q 047079 151 LDL 153 (296)
Q Consensus 151 ~~~ 153 (296)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.5e-17 Score=119.24 Aligned_cols=70 Identities=33% Similarity=0.878 Sum_probs=58.7
Q ss_pred HHHhhCCcccccchhhhhcccCCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079 81 SLIQAFPAFAYSTVKDFRRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP 154 (296)
Q Consensus 81 ~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~ 154 (296)
+.+++||.+.|...+ .......|+||++.|..++.++.++ |+|+||..||..|++.+.+||+||+.+.+.
T Consensus 4 ~~i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345678888886533 2235678999999999999999998 999999999999999999999999998653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.55 E-value=2.5e-15 Score=104.43 Aligned_cols=51 Identities=55% Similarity=1.140 Sum_probs=46.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457899999999998888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8e-15 Score=108.04 Aligned_cols=51 Identities=35% Similarity=0.851 Sum_probs=47.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
....|+||++.|..+..+..++ |+|+||..||..|++.+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4678999999999999888888 99999999999999999999999999864
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=8.3e-15 Score=106.50 Aligned_cols=52 Identities=42% Similarity=1.011 Sum_probs=47.2
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~ 154 (296)
....|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 5678999999999888888888 999999999999999999999999998643
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1.3e-14 Score=108.01 Aligned_cols=52 Identities=44% Similarity=1.022 Sum_probs=47.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~ 154 (296)
...+|+||++.|..++.+..++ |+|+||..||..|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 4678999999999998888888 999999999999999999999999998753
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.2e-15 Score=110.31 Aligned_cols=51 Identities=31% Similarity=0.806 Sum_probs=42.7
Q ss_pred CCcccccccccccc-----------CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFED-----------DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~-----------~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.+..|+||++.|.+ ++.++.++.|+|.||..||++||+.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 34678888888864 4456667679999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.43 E-value=1.1e-13 Score=95.82 Aligned_cols=50 Identities=26% Similarity=0.697 Sum_probs=42.8
Q ss_pred CCccccccccccccCc-eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|+||++.|.+++ .+..++ |+|+||..||..|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999999997644 456666 9999999999999999999999998874
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.43 E-value=4.1e-14 Score=112.44 Aligned_cols=50 Identities=30% Similarity=0.664 Sum_probs=42.9
Q ss_pred CCccccccccccccCc---------------eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDN---------------ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~---------------~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.+..|+||++.|.... .+..++ |+|.||..||+.||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999998651 355566 9999999999999999999999999864
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.41 E-value=1.4e-13 Score=109.59 Aligned_cols=51 Identities=25% Similarity=0.622 Sum_probs=41.5
Q ss_pred CccccccccccccCc---------------eeEEecccCceechhhhHHHH-----hcCCCCCCcCcCCCCC
Q 047079 103 GLECAICLAEFEDDN---------------ILRLLTVCYHVFHQECIDLWL-----ESHKTCPVCRSDLDLP 154 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~---------------~~r~lp~C~H~Fh~~CI~~Wl-----~~~~tCP~CR~~~~~~ 154 (296)
+..|+||++.|..+. .+++++ |+|+||..||..|| ..+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997654 334565 99999999999999 4577899999988643
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.40 E-value=1.2e-13 Score=100.61 Aligned_cols=51 Identities=27% Similarity=0.714 Sum_probs=43.9
Q ss_pred CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
....|+||++.|.++ ..+..++ |||.||..||..|++.+.+||+||..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 467899999999875 4445666 99999999999999999999999999864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=99.42 Aligned_cols=50 Identities=28% Similarity=0.741 Sum_probs=42.9
Q ss_pred CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|+||++.|.++ ..+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 457899999999875 2345666 9999999999999999999999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=96.81 Aligned_cols=50 Identities=28% Similarity=0.739 Sum_probs=43.1
Q ss_pred CccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
..+|+||++.|.++ ..+..++ |||.||..||..|++.+.+||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 46899999999865 3445666 99999999999999999999999998864
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.3e-13 Score=96.61 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=42.2
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~ 154 (296)
....|+||++.|.++. .+++ |+|.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~--~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDAT--TITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCE--ECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcC--EECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4578999999998753 3335 999999999999999999999999998643
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=99.09 Aligned_cols=51 Identities=29% Similarity=0.760 Sum_probs=43.1
Q ss_pred CCccccccccccccCceeEEecccC-----ceechhhhHHHHhcC--CCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCY-----HVFHQECIDLWLESH--KTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~-----H~Fh~~CI~~Wl~~~--~tCP~CR~~~~~~ 154 (296)
.+..|.||+++|.+++.+ ++| |. |.||..||++||..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 456899999999877766 577 96 999999999999865 4899999998653
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.32 E-value=1.1e-12 Score=94.71 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=41.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.+..|+||++.+.++ ...++ |+|.||..||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 356899999998764 35666 9999999999999999999999999885
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-13 Score=97.54 Aligned_cols=48 Identities=40% Similarity=0.932 Sum_probs=42.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~ 154 (296)
....|+||++.+.+ ..++ |+|.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 45789999999877 4566 999999999999999999999999998643
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.31 E-value=9.7e-14 Score=112.14 Aligned_cols=51 Identities=31% Similarity=0.654 Sum_probs=1.1
Q ss_pred CCccccccccccccCc--------------eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDN--------------ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~--------------~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.+..|+||++.|.+.. ...++++|+|.||..||++||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 5578999999997632 12232349999999999999999999999999865
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=95.56 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=41.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|+||++.|.++ ..++ |+|+||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 457899999998765 3456 9999999999999999999999999885
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.7e-12 Score=97.00 Aligned_cols=52 Identities=31% Similarity=0.760 Sum_probs=44.0
Q ss_pred CCccccccccccccCce-eEEecccCceechhhhHHHHhcC---CCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNI-LRLLTVCYHVFHQECIDLWLESH---KTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~-~r~lp~C~H~Fh~~CI~~Wl~~~---~tCP~CR~~~~~~ 154 (296)
....|+||++.|.+.+. ...++ |||.||..||..|+..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45789999999988664 55666 99999999999999876 7899999988643
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=93.17 Aligned_cols=49 Identities=29% Similarity=0.567 Sum_probs=40.7
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~CR~~~~~ 153 (296)
....|+||++.|.++.. ++.|+|.||..||..|+..+ .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45789999999987633 44599999999999999865 689999997653
No 22
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=7.4e-12 Score=93.11 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=42.2
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~CR~~~~~~ 154 (296)
...+|+||++.|..++.. . .|+|.||..||.+||+++ .+||+||.++...
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--S-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCcc--C-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 446899999999876543 3 599999999999999987 8899999988643
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6e-12 Score=92.00 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=40.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~CR~~~~~~ 154 (296)
....|+||++.|.++. .++ |||.||..||..|+. ...+||+||..+...
T Consensus 19 ~~~~C~IC~~~~~~~~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSEE---ECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCeE---EcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4578999999998643 345 999999999999997 456899999998643
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=6.8e-12 Score=103.49 Aligned_cols=46 Identities=37% Similarity=0.938 Sum_probs=40.7
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
+..|+||++.|.++ ..+| |||.||..||..|+..+.+||+||.++.
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46799999999765 3466 9999999999999999999999999885
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=1e-11 Score=100.22 Aligned_cols=51 Identities=27% Similarity=0.714 Sum_probs=44.0
Q ss_pred CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
+...|+||++.|.++ ..+..++ |||+||..||..|++.+.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 457899999999875 3445666 99999999999999999999999998864
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=88.81 Aligned_cols=48 Identities=21% Similarity=0.482 Sum_probs=40.9
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~ 153 (296)
....|+||++.+.++.. ++ |||+||..||..|+. ...+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45789999999987754 45 999999999999994 56789999998864
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=92.79 Aligned_cols=47 Identities=21% Similarity=0.566 Sum_probs=41.2
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|+||++.|.++. +++ |+|+||..||..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPV---VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEE---ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCee---Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4578999999997753 356 9999999999999999999999999885
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=2.1e-11 Score=87.46 Aligned_cols=51 Identities=24% Similarity=0.657 Sum_probs=40.9
Q ss_pred Ccccccccc-ccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079 103 GLECAICLA-EFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~-~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~ 153 (296)
+..|+||++ .|.++....++.+|||+||..||..|+.. ..+||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 78877654333349999999999999764 4679999999864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=96.61 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=40.7
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~ 152 (296)
....|+||++.|.++ +.+++ |||.||..||..|+... .+||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 457899999999865 33255 99999999999999987 68999999985
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.15 E-value=2.6e-11 Score=90.59 Aligned_cols=48 Identities=35% Similarity=0.755 Sum_probs=41.4
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc------CCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES------HKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~------~~tCP~CR~~~~~ 153 (296)
....|+||++.|.++. .++ |+|.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4578999999998764 456 9999999999999987 6789999998864
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=94.41 Aligned_cols=49 Identities=29% Similarity=0.618 Sum_probs=41.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
....|+||++.|.++.. +++ |||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~--~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMI--IPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEE--CTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCE--ECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34689999999987532 234 99999999999999999999999998863
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.12 E-value=2.7e-11 Score=95.57 Aligned_cols=49 Identities=33% Similarity=0.756 Sum_probs=41.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
....|+||++.|.++ +.+++ |||.||..||..|+....+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 457899999999865 33335 99999999999999999999999998864
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=3.2e-11 Score=89.38 Aligned_cols=48 Identities=29% Similarity=0.573 Sum_probs=41.4
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~ 153 (296)
....|+||++.|.++.. ++ |||.||..||..|+.. +.+||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~Pv~---~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVI---VS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEE---ET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEE---cC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 46789999999987643 45 9999999999999987 7889999998864
No 34
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.12 E-value=3.3e-11 Score=102.01 Aligned_cols=75 Identities=31% Similarity=0.507 Sum_probs=51.8
Q ss_pred CCCCCHHHHhhCCcccccchhhh----hcccCCccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCc
Q 047079 75 NPGLHPSLIQAFPAFAYSTVKDF----RRQKYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRS 149 (296)
Q Consensus 75 ~~gl~~~~i~~lp~~~~~~~~~~----~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~ 149 (296)
..++....+...+.....+..+. ........|+||++.|.++ +.+++ |||.||..||..|+.. +.+||+||.
T Consensus 22 ~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 98 (165)
T 2ckl_B 22 TWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRK 98 (165)
T ss_dssp CCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred cccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCC
Confidence 34666666666554433322111 1112346899999999874 33345 9999999999999997 778999999
Q ss_pred CCC
Q 047079 150 DLD 152 (296)
Q Consensus 150 ~~~ 152 (296)
.+.
T Consensus 99 ~~~ 101 (165)
T 2ckl_B 99 KLV 101 (165)
T ss_dssp BCC
T ss_pred cCC
Confidence 885
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.6e-11 Score=85.03 Aligned_cols=42 Identities=31% Similarity=0.668 Sum_probs=35.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVC 147 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~C 147 (296)
....|+||++.|.++. .++ |||+||..||..|++ ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCE---ECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeE---EeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4678999999998763 345 999999999999998 45689998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=4.3e-11 Score=96.51 Aligned_cols=51 Identities=27% Similarity=0.714 Sum_probs=43.1
Q ss_pred CCccccccccccccC----ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDD----NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
....|+||++.|.+. .....++ |||+||..||++|++.+.+||+||..+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 567899999999864 2334555 99999999999999999999999998863
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.8e-11 Score=87.97 Aligned_cols=48 Identities=31% Similarity=0.666 Sum_probs=41.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc------CCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES------HKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~------~~tCP~CR~~~~~ 153 (296)
....|+||++.|.++.. ++ |+|.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLS---LD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBC---CS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCcee---CC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45789999999987643 45 9999999999999987 7889999999874
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.05 E-value=2.4e-11 Score=90.01 Aligned_cols=48 Identities=27% Similarity=0.648 Sum_probs=41.2
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc-------CCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-------HKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-------~~tCP~CR~~~~~ 153 (296)
....|+||++.|.++.. ++ |||.||..||..|+.. ..+||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 46789999999987643 45 9999999999999986 6689999999864
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.03 E-value=9.6e-11 Score=94.62 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=40.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~ 153 (296)
....|+||++.|.++.. ++ |||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPIT---TV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEE---ee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34689999999987633 45 999999999999998554 89999999864
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=81.01 Aligned_cols=42 Identities=36% Similarity=0.914 Sum_probs=35.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHH---hcCCCCCCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL---ESHKTCPVC 147 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl---~~~~tCP~C 147 (296)
....|+||++.|.++.. ++ |+|+||..||..|+ ....+||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI---IE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCC---CS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEe---CC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45789999999988743 55 99999999999995 456789998
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=95.95 Aligned_cols=49 Identities=22% Similarity=0.610 Sum_probs=41.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~~ 154 (296)
....|+||++.|.++.. ++ |||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34789999999987643 55 999999999999998765 899999998753
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.8e-10 Score=89.71 Aligned_cols=47 Identities=34% Similarity=0.774 Sum_probs=40.0
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCC---CCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK---TCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~---tCP~CR~~~~~ 153 (296)
...|+||++.|.++.. ++ |||.||..||..|+..+. +||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999999987644 45 999999999999998654 89999998864
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=86.53 Aligned_cols=48 Identities=29% Similarity=0.584 Sum_probs=39.9
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~CR~~~~ 152 (296)
....|+||++.|.++. .++.|||.||..||..|+... .+||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4678999999998764 344499999999999999754 58999998874
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.94 E-value=2.7e-10 Score=91.29 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=40.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~ 153 (296)
....|+||++.|.++. .++ |||.||..||..|+.... +||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeE---ECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4578999999998763 345 999999999999998765 89999998863
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.93 E-value=8.7e-11 Score=93.56 Aligned_cols=46 Identities=26% Similarity=0.695 Sum_probs=39.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~ 152 (296)
+..|+||++.|.++.. ++ |||.||..||..|+.. ..+||+||..+.
T Consensus 15 ~~~C~iC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEPVT---LP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSCEE---CT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCceeE---cC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4689999999987643 45 9999999999999976 668999999885
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.92 E-value=4.5e-10 Score=89.49 Aligned_cols=47 Identities=30% Similarity=0.565 Sum_probs=40.3
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~~ 153 (296)
...|+||++.|.++.. ++ |||.||..||..|+.. ..+||+||..+..
T Consensus 23 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4689999999987643 45 9999999999999987 7789999998863
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.88 E-value=7.1e-10 Score=84.18 Aligned_cols=47 Identities=19% Similarity=0.058 Sum_probs=41.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..+.|+||++.|.++.. ++ |||+|+..||..||..+.+||+||..+.
T Consensus 13 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVR---LP-SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchhcCCeE---CC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 46789999999998854 45 9999999999999999999999998875
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.87 E-value=9.2e-10 Score=86.23 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=42.5
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
..+.|+||++.|.++.. ++ |||+|+..||..||..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVR---LP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEE---ET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeE---CC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 46789999999998854 45 99999999999999999999999998863
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=6.2e-10 Score=77.80 Aligned_cols=47 Identities=30% Similarity=0.655 Sum_probs=39.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLPQ 155 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~~ 155 (296)
....|+||++.|.++ ..++ |+|.||..||..| ...||+||+.+..+.
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 467899999999876 3456 9999999999885 678999999987543
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=7.5e-10 Score=91.90 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=40.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCC-CCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~~~~ 153 (296)
....|+||++.|.++.. ++ |||.||..||..|+.... +||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~pv~---~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQ---AQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCcEE---CC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45789999999988733 45 999999999999998665 89999998754
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.85 E-value=1.1e-09 Score=85.50 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=42.1
Q ss_pred CCccccccccccccCceeEEecccC-ceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCY-HVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~-H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
..+.|+||++.|.++.. ++ || |+|+..||..||..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~dPV~---~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVV---LP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeE---CC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45789999999998854 44 99 999999999999999999999998863
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=1.8e-09 Score=80.89 Aligned_cols=52 Identities=25% Similarity=0.444 Sum_probs=40.2
Q ss_pred CCccccccccccccCcee-EEecccCceechhhhHHHHh-cCCCCCCcCcCCCCC
Q 047079 102 YGLECAICLAEFEDDNIL-RLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDLP 154 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~-r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~~ 154 (296)
++..|+||++.+...+.. .-++ |||.||..||..|+. ....||+||+.+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 567899999998654322 2233 999999999999985 456799999998743
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.84 E-value=2.3e-09 Score=77.07 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=39.4
Q ss_pred CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.+.+|.||++.+.+.. +..+| |||. |+..|+..|+..+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3458999999876542 11237 9999 899999999998999999999874
No 54
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.82 E-value=7.9e-10 Score=103.67 Aligned_cols=53 Identities=26% Similarity=0.606 Sum_probs=41.2
Q ss_pred cCCccccccccccccCcee----EEecccCceechhhhHHHHhcC-----------CCCCCcCcCCCC
Q 047079 101 KYGLECAICLAEFEDDNIL----RLLTVCYHVFHQECIDLWLESH-----------KTCPVCRSDLDL 153 (296)
Q Consensus 101 ~~~~~C~ICl~~~~~~~~~----r~lp~C~H~Fh~~CI~~Wl~~~-----------~tCP~CR~~~~~ 153 (296)
....+|+||++.+.++..+ -..++|+|.||..||.+||++. .+||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3667999999999873322 2234699999999999999752 469999998853
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.80 E-value=3e-09 Score=101.74 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=40.2
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~~ 153 (296)
...|+||++.+.++ ..+| |||.||..||..|+. ...+||+||..+..
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46899999998653 4566 999999999999998 68889999998863
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.5e-09 Score=86.80 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=39.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|+||++.|.++..+ .+ |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~--~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCL--GG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCC--CS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEe--CC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 457899999999877433 24 999999999999998 78999999874
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=3.5e-09 Score=75.82 Aligned_cols=49 Identities=18% Similarity=0.437 Sum_probs=39.4
Q ss_pred CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|.||++.+.+.. +..+| |||. ||..|+..|.+....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3468999999865542 22236 9998 999999999988889999999874
No 58
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=1.4e-08 Score=77.93 Aligned_cols=48 Identities=23% Similarity=0.668 Sum_probs=40.5
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc--------CCCCCC--cCcC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES--------HKTCPV--CRSD 150 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~--------~~tCP~--CR~~ 150 (296)
....|+||++.|..++.+.+.+ |+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999999888777666 9999999999999863 236999 9877
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.62 E-value=1.2e-08 Score=86.41 Aligned_cols=48 Identities=29% Similarity=0.506 Sum_probs=40.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~~ 153 (296)
..+.|+||++.|.++. .++ |||+||..||..|+... .+||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~pv---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcE---ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4578999999998873 255 99999999999999864 489999998853
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=78.31 Aligned_cols=48 Identities=27% Similarity=0.571 Sum_probs=39.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC------CCCCC--cCcC-CC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH------KTCPV--CRSD-LD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~------~tCP~--CR~~-~~ 152 (296)
..+.|+||++.|.++.. ++.|||+|+..||..||..+ .+||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~dPV~---~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVK---NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSSEEE---ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcCCEE---cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 45789999999998754 32499999999999999864 48999 9866 53
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=1.7e-08 Score=90.86 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=40.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc-CCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-HKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-~~tCP~CR~~~~ 152 (296)
....|+||++.|.++.. ++ |||+||..||..|+.. ..+||+||.++.
T Consensus 207 ~~~~c~i~~~~~~dPv~---~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSSEEE---CS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcCCeE---CC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 46889999999998854 45 9999999999999986 445999998885
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.59 E-value=5e-09 Score=77.24 Aligned_cols=43 Identities=21% Similarity=0.544 Sum_probs=36.2
Q ss_pred CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+.
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 346899999987654 3566 9999 999999999 88999999875
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.58 E-value=2.3e-08 Score=71.09 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=36.3
Q ss_pred CCccccccccccccCceeEEecccC--c---eechhhhHHHHhc--CCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCY--H---VFHQECIDLWLES--HKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~--H---~Fh~~CI~~Wl~~--~~tCP~CR~~~~ 152 (296)
....|.||+++.. +.+ ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999999843 333 466 65 4 9999999999974 678999998764
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.44 E-value=6.4e-08 Score=83.41 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC-CCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH-KTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~-~tCP~CR~~~~ 152 (296)
..+.|+||++.|.++..+ + |||+|+..||..||..+ .+||+|+.++.
T Consensus 105 ~~f~CPI~~elm~DPV~~---~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMREPCIT---P-SGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCSSEEEC---T-TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccCCCCeEC---C-CCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 568999999999987543 5 99999999999999864 47999998875
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.1e-07 Score=67.63 Aligned_cols=44 Identities=25% Similarity=0.698 Sum_probs=35.9
Q ss_pred CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
....|.||++.+.+ +.++| |+|. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 45789999998643 55677 9999 99999984 5789999998863
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=6.8e-08 Score=71.15 Aligned_cols=43 Identities=21% Similarity=0.583 Sum_probs=34.9
Q ss_pred CccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+||++.+.+.. .+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~~~---~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIV---FVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBC---CSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEE---Eec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 457999999986643 456 9999 99999964 4789999998853
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.37 E-value=1.2e-07 Score=67.55 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=40.5
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
..|+||++.+.++. +++.|||+|...||.+||..+.+||+++.+|..
T Consensus 4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 57999999999773 342499999999999999988899999998863
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.35 E-value=6.5e-08 Score=72.33 Aligned_cols=43 Identities=28% Similarity=0.694 Sum_probs=35.4
Q ss_pred CccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|.||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4589999998654 45667 9999 999999987 389999998853
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.4e-07 Score=85.66 Aligned_cols=48 Identities=29% Similarity=0.613 Sum_probs=40.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC--CCCCC--cCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH--KTCPV--CRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~--~tCP~--CR~~~~ 152 (296)
....|+||++.|.++.. .+ .|||+|+..||..|+..+ .+||+ |+..+.
T Consensus 180 ~el~CPIcl~~f~DPVt--s~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLI--SR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEE--ES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCee--eC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 56789999999988854 23 399999999999999864 46999 998774
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.08 E-value=6.6e-07 Score=84.51 Aligned_cols=43 Identities=26% Similarity=0.675 Sum_probs=36.6
Q ss_pred CCccccccccccccCceeEEecccCce-echhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHV-FHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.+..|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 567899999998654 4456 9999 999999998 78999999875
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.02 E-value=3.5e-06 Score=75.60 Aligned_cols=49 Identities=20% Similarity=0.434 Sum_probs=40.4
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCC--CCCCcCcCCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHK--TCPVCRSDLDLP 154 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~--tCP~CR~~~~~~ 154 (296)
..+|+||.+.+..+ .++- .|+|.||..|+..|++.+. .||.|+..+...
T Consensus 180 i~~C~iC~~iv~~g--~~C~-~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCE-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--EECS-SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC--cccC-ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 57899999999976 3333 4999999999999998765 899999887543
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.98 E-value=4.5e-06 Score=64.83 Aligned_cols=45 Identities=29% Similarity=0.614 Sum_probs=37.0
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHh-cCCCCCCcCcCCC
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-SHKTCPVCRSDLD 152 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-~~~tCP~CR~~~~ 152 (296)
-|.+|--.|. ...|++| |.|+||.+|+..|.+ ..++||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4788865554 4678888 999999999999985 5678999998875
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.83 E-value=0.0065 Score=43.56 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=35.0
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC----CCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH----KTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~~~ 152 (296)
....|.||.+. ++.+..- .|...||..|++..|... -.||.|.....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 45679999753 5555544 499999999999888653 36999976554
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.15 E-value=0.01 Score=45.25 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=27.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHH
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW 137 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W 137 (296)
+..|.||++.+..+.....+. |+|.||..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998765555566676 9999999999984
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.41 E-value=0.08 Score=40.45 Aligned_cols=47 Identities=23% Similarity=0.503 Sum_probs=37.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
+-..|-.|...+ ...|+. ..|++|..|+..-|.....||+|..+|..
T Consensus 27 G~~nCKsCWf~~--k~LV~C---~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFEN--KGLVEC---NNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCC--SSEEEC---SSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhcccc--CCeeee---cchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 456899997664 444551 47999999999999999999999998854
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.20 E-value=0.073 Score=37.30 Aligned_cols=48 Identities=19% Similarity=0.515 Sum_probs=34.7
Q ss_pred CCcccccccccccc-CceeEEecccCceechhhhHHHHh-----cCCCCCCcCcC
Q 047079 102 YGLECAICLAEFED-DNILRLLTVCYHVFHQECIDLWLE-----SHKTCPVCRSD 150 (296)
Q Consensus 102 ~~~~C~ICl~~~~~-~~~~r~lp~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~ 150 (296)
+...|+||...+.+ +..|..- .|...||..|+..-.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999998864 4456655 4999999999875432 35579999653
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=90.19 E-value=0.13 Score=44.03 Aligned_cols=47 Identities=26% Similarity=0.539 Sum_probs=34.8
Q ss_pred ccccccccccccCc----eeEEecccCceechhhhHHH------Hh-----cCCCCCCcCcCC
Q 047079 104 LECAICLAEFEDDN----ILRLLTVCYHVFHQECIDLW------LE-----SHKTCPVCRSDL 151 (296)
Q Consensus 104 ~~C~ICl~~~~~~~----~~r~lp~C~H~Fh~~CI~~W------l~-----~~~tCP~CR~~~ 151 (296)
..|+||...|.+++ .+.+- .|...||..|+.-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999999998876 55555 49999999997531 11 157899997643
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.66 E-value=0.3 Score=36.50 Aligned_cols=34 Identities=21% Similarity=0.584 Sum_probs=24.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHH
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW 137 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W 137 (296)
.+..|.||- .|...+.+..-- |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence 467899994 445555444433 9999999999985
No 79
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.44 E-value=0.23 Score=38.01 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCcC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVCR 148 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~CR 148 (296)
....| ||......+..|..-. |.-.||..|+..=+. ....||.|+
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 34568 8988777777776654 999999999875332 234699996
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=86.90 E-value=0.25 Score=34.45 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=31.7
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
.+..|.||... ++.+..- .|...||..|+..-+.. .-.||.|..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45689999873 4555544 59999999999986543 335999964
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.65 E-value=0.26 Score=32.77 Aligned_cols=44 Identities=30% Similarity=0.657 Sum_probs=30.1
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
.|.||...-..++.+..- .|...||..|+++=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764444455544 59999999999764432 224999964
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.54 E-value=0.22 Score=42.16 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=33.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~ 151 (296)
.+..|.||... ++.+.. -.|.-.||..|+++-|.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~C-d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCC-EKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEEC-SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ceeeec-CCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34679999854 554444 459999999999887654 23599998654
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=86.26 E-value=0.2 Score=43.26 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=33.0
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcC----CCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESH----KTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~----~tCP~CR~~~ 151 (296)
.+..|.+|... ++ +.+-..|...||..|+++.|... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999754 44 44444599999999998877542 3599997543
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.15 E-value=0.14 Score=37.07 Aligned_cols=50 Identities=16% Similarity=0.386 Sum_probs=34.9
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~~ 152 (296)
....|.||.........+..- .|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699998876433455544 49999999999865532 446999976553
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.92 E-value=0.39 Score=37.17 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=31.5
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCR 148 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR 148 (296)
.+..|.||.+.=...+.+..- .|...||..|++.++.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 567899998763333335544 59999999999987642 23477664
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.81 E-value=0.27 Score=34.24 Aligned_cols=46 Identities=22% Similarity=0.449 Sum_probs=31.9
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~ 151 (296)
.+..|.||... ++.+..- .|...||..|+..-|.. .-.||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45679999753 4444444 48999999999865543 23599997543
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.59 E-value=0.6 Score=34.02 Aligned_cols=48 Identities=21% Similarity=0.565 Sum_probs=33.8
Q ss_pred CCccccccccccc-cCceeEEecccCceechhhhHHHHh-----cCCCCCCcCcCC
Q 047079 102 YGLECAICLAEFE-DDNILRLLTVCYHVFHQECIDLWLE-----SHKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~-~~~~~r~lp~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~~ 151 (296)
....| ||...+. .+..|..-. |...||..|+.--.. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGL-CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTT-TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCC-CCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 9998875 455666654 999999999863321 355799998654
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.02 E-value=0.18 Score=34.47 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=30.3
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
.+..|.||... ++.+..- .|...||..|+++-|.. .-.||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45679999874 4555444 59999999999865543 224887753
No 89
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.46 E-value=0.3 Score=35.71 Aligned_cols=49 Identities=22% Similarity=0.448 Sum_probs=34.3
Q ss_pred CCccccccccccccCceeEEec-ccCceechhhhHHHH---------hcCCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLT-VCYHVFHQECIDLWL---------ESHKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp-~C~H~Fh~~CI~~Wl---------~~~~tCP~CR~~~ 151 (296)
....| ||......+.+|..-. .|...||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45678 8998866676776651 399999999986422 1355799997644
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.34 E-value=0.88 Score=34.25 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=32.2
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSD 150 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~ 150 (296)
.+..|.||... ++.+.. ..|.-.||..|+++=|.. .-.||.|...
T Consensus 24 n~~~C~vC~~~---g~LL~C-D~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMC-NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS---SCCEEC-TTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC---CCEEEC-CCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45689999864 444444 358999999999876643 2259999754
No 91
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=81.70 E-value=0.25 Score=38.33 Aligned_cols=49 Identities=24% Similarity=0.567 Sum_probs=33.9
Q ss_pred ccccccccccccCc-eeEEecccCceechhhhHHHH----------hcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWL----------ESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl----------~~~~tCP~CR~~~~ 152 (296)
..|.||...+.++. .+..-..|.-.||..|+.--- .....||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 57999999986543 444432488999999986321 03457999976543
No 92
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.57 E-value=0.32 Score=35.18 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=34.1
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHH---------hcCCCCCCcCcCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL---------ESHKTCPVCRSDL 151 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl---------~~~~tCP~CR~~~ 151 (296)
...| ||...+..+..|..-. |...||..|+..-. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 8998877666777664 99999999985321 2467899997543
No 93
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=80.59 E-value=0.32 Score=34.75 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=32.5
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHh---cCCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---SHKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~~~tCP~CR~ 149 (296)
....| ||...+.....|..-. |...||..|+..--. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence 45678 9988776555777665 999999999874321 3456888854
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=80.21 E-value=0.84 Score=30.55 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=29.3
Q ss_pred cccccccccccCc-eeEEecccCceechhhhHHHH----hcCCCCCCcC
Q 047079 105 ECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWL----ESHKTCPVCR 148 (296)
Q Consensus 105 ~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl----~~~~tCP~CR 148 (296)
.|.||...+.++. .+..-..|.--||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988886544 444331388899999976432 2566799985
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.37 E-value=0.73 Score=35.86 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=29.8
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
.|.||...-.+++.+..--.|...||..|+++-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888643233333333459999999999876543 235999974
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.37 E-value=0.39 Score=33.88 Aligned_cols=44 Identities=25% Similarity=0.510 Sum_probs=31.2
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
.+..|.||... ++.+..- .|.-.||..|+.+-|.. .-.||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccC
Confidence 56789999864 4555444 59999999999865543 235999954
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.89 E-value=0.54 Score=32.42 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=31.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~ 151 (296)
.+..|.||... ++.+..- .|.-.||..|+.+-|.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 35679999874 4555544 59999999999865543 22488886543
No 98
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.83 E-value=0.64 Score=34.03 Aligned_cols=44 Identities=34% Similarity=0.657 Sum_probs=28.9
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhc----C-CCCCCcCc
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----H-KTCPVCRS 149 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~-~tCP~CR~ 149 (296)
.|.||...-..+..+.. -.|...||..|+++-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~C-D~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMC-DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEEC-TTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEe-CCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 57777665444444443 358999999999976543 2 35998875
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=75.63 E-value=0.73 Score=39.26 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=31.1
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSD 150 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~ 150 (296)
+..|.+|... ++.+.+- .|...||..|+++=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd-~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCT-TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECC-CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3579999854 4555444 49999999999765532 2259999765
No 100
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=73.22 E-value=1.7 Score=45.74 Aligned_cols=47 Identities=21% Similarity=0.155 Sum_probs=40.5
Q ss_pred CCccccccccccccCceeEEecccC-ceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCY-HVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~-H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
....|+|-++.+.++.. +| -| +.|-+.+|.+||.++.+||+=|.++.
T Consensus 890 ~~F~cPIs~~lM~DPVi---lp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVI---LP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp GGGBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred HHhCCcchhhHHhCCeE---cC-CCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 45789999999998854 44 66 68999999999999999999998886
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.08 E-value=0.51 Score=35.66 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=32.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSD 150 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~ 150 (296)
....|.||...-..+..+..- .|...||..|+.+=|.. .-.||.|...
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD-~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCD-GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECT-TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcC-CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 445799998775444444444 59999999999854432 2249999653
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=73.05 E-value=2.4 Score=29.79 Aligned_cols=35 Identities=31% Similarity=0.582 Sum_probs=24.8
Q ss_pred CCccccccccccccCceeEEec-ccCceechhhhHH
Q 047079 102 YGLECAICLAEFEDDNILRLLT-VCYHVFHQECIDL 136 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp-~C~H~Fh~~CI~~ 136 (296)
....|.+|...+.+++....-- .|.-.||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 3467999999987665443333 5899999999753
No 103
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=72.73 E-value=2.1 Score=30.66 Aligned_cols=45 Identities=22% Similarity=0.531 Sum_probs=28.5
Q ss_pred CCccccccccccccCceeEEecc--cC-ceechhhhHHHHhc----CCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTV--CY-HVFHQECIDLWLES----HKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~~~ 151 (296)
...-| ||..... +..|.. -. |. ..||..|+. |.. .-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~C-D~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGC-DNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECC-SCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEe-eCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44567 8987643 444432 23 44 689999998 432 34699997543
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=72.59 E-value=3.6 Score=33.58 Aligned_cols=44 Identities=23% Similarity=0.551 Sum_probs=31.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHh-----------cCCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE-----------SHKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~-----------~~~tCP~CR~ 149 (296)
.+..|.||.+. ++.+ .--.|..+||..||++=|. ..-.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 56789999865 5444 4445999999999997552 1235999963
No 105
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.52 E-value=3.9 Score=30.29 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=31.4
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES 140 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~ 140 (296)
..+.|.+|.+.+++.--+..-..=.|.||..|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 457899999999988777633333899999999999875
No 106
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=72.02 E-value=6.5 Score=27.90 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=16.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047079 20 SPPITIILTVTLLVFFFVGFFSVYFCRC 47 (296)
Q Consensus 20 ~~~~~Ivl~vli~v~~~l~~~~i~~~~~ 47 (296)
.|.++|++..++.+++|+++.+++..+|
T Consensus 7 ~p~~LivlGg~~~lll~~glcI~ccvkc 34 (70)
T 2klu_A 7 GSMALIVLGGVAGLLLFIGLGIFFSVRS 34 (70)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 3444467777777777666666544334
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.52 E-value=0.76 Score=38.23 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=32.5
Q ss_pred CCcccccccccccc-CceeEEecccCceechhhhHHHH-----hcCCCCCCcCcC
Q 047079 102 YGLECAICLAEFED-DNILRLLTVCYHVFHQECIDLWL-----ESHKTCPVCRSD 150 (296)
Q Consensus 102 ~~~~C~ICl~~~~~-~~~~r~lp~C~H~Fh~~CI~~Wl-----~~~~tCP~CR~~ 150 (296)
....| ||.....+ +..+.+- .|...||..|+..-. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45679 99988753 3455555 499999999986322 235579999753
No 108
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.60 E-value=3 Score=31.42 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=28.9
Q ss_pred CCccccccccccccCceeEEecc--cC-ceechhhhHHHHhc----CCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTV--CY-HVFHQECIDLWLES----HKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~~~ 151 (296)
...-| ||..... ++++..- . |. ..||..|+. |.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD-~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCD-NPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCS-CSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEec-CCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9988653 4444422 3 44 689999998 332 44699997654
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.48 E-value=5.3 Score=30.82 Aligned_cols=45 Identities=18% Similarity=0.450 Sum_probs=28.5
Q ss_pred Ccccccccccc------ccCceeEEecccCceechhhhHHH------H-hcCCCCCCcC
Q 047079 103 GLECAICLAEF------EDDNILRLLTVCYHVFHQECIDLW------L-ESHKTCPVCR 148 (296)
Q Consensus 103 ~~~C~ICl~~~------~~~~~~r~lp~C~H~Fh~~CI~~W------l-~~~~tCP~CR 148 (296)
...|.+|+..= ..++.+... .|+..||..||..+ + ...-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~-~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCA-DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECT-TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhh-hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35799998752 223445444 49999999999632 2 2233577774
No 110
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=68.85 E-value=0.53 Score=33.37 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=30.7
Q ss_pred CccccccccccccCceeEEe-cccCceechhhhHHHH--------hcCCCCCCcCc
Q 047079 103 GLECAICLAEFEDDNILRLL-TVCYHVFHQECIDLWL--------ESHKTCPVCRS 149 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~l-p~C~H~Fh~~CI~~Wl--------~~~~tCP~CR~ 149 (296)
...| ||......+.+|..- +.|...||..|+.--- ..+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 898777777777653 2488899999984211 11456999963
No 111
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.47 E-value=1.5 Score=31.94 Aligned_cols=45 Identities=24% Similarity=0.576 Sum_probs=30.0
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhc-----CCCCCCcCc
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-----HKTCPVCRS 149 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~ 149 (296)
-.|.||...-..++.+.. -.|...||..|+++=|.. .-.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~C-D~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLC-DECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEEC-SSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEc-CCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368899865444444444 359999999999854432 235888864
No 112
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=68.43 E-value=0.87 Score=32.53 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=33.3
Q ss_pred CCccccccccccccCc-eeEEecccCceechhhhHHHH----hcCCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWL----ESHKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl----~~~~tCP~CR~~~ 151 (296)
....| ||.....++. .|..-. |...||..|+..-- .....||.|+...
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~-C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDG-CGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSS-SCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCC-CCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34568 7988776654 666554 99999999987532 2345699996543
No 113
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=67.54 E-value=3.7 Score=31.87 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=29.9
Q ss_pred cCCccccccccccccCceeEEec-ccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079 101 KYGLECAICLAEFEDDNILRLLT-VCYHVFHQECIDLWLES----HKTCPVCRSDL 151 (296)
Q Consensus 101 ~~~~~C~ICl~~~~~~~~~r~lp-~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~ 151 (296)
..+..|.+|.+ .++.+..-. .|...||..|+. |.. .-.||.|...+
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 35678999983 244444321 388999999998 543 22488776544
No 114
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=67.54 E-value=2.6 Score=29.73 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=14.6
Q ss_pred ccccccccccHHHHHHHh
Q 047079 238 LEDRHTLRLPENVKLKIL 255 (296)
Q Consensus 238 ~~er~tlrLpe~v~~~~~ 255 (296)
...+|+||||++++.+|.
T Consensus 6 ~~~~f~lRlp~eLh~~l~ 23 (64)
T 1nla_A 6 KMPQFLNRWPREVLDLVR 23 (64)
T ss_dssp CCCGGGGSSCHHHHHHHH
T ss_pred cCCceEeeCCHHHHHHHH
Confidence 356999999999986654
No 115
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=67.45 E-value=2 Score=28.92 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=13.8
Q ss_pred cccccccccHHHHHHHh
Q 047079 239 EDRHTLRLPENVKLKIL 255 (296)
Q Consensus 239 ~er~tlrLpe~v~~~~~ 255 (296)
..+||||||++++.+|.
T Consensus 7 ~~~~~lRlp~eL~~~l~ 23 (53)
T 1baz_A 7 MPQVNLRWPREVLDLVR 23 (53)
T ss_dssp SCEEEEECCHHHHHHHH
T ss_pred CCeeEEECCHHHHHHHH
Confidence 45899999999986554
No 116
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=66.70 E-value=3.2 Score=28.74 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=32.4
Q ss_pred CCcccccccccccc-CceeEEecccCceechhhhHHHHh-------cCCCCCCcCcC
Q 047079 102 YGLECAICLAEFED-DNILRLLTVCYHVFHQECIDLWLE-------SHKTCPVCRSD 150 (296)
Q Consensus 102 ~~~~C~ICl~~~~~-~~~~r~lp~C~H~Fh~~CI~~Wl~-------~~~tCP~CR~~ 150 (296)
.+..|.||...... +..+.+-..|.-.||..|+..=+. ..-.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45689999987533 233334445999999999886432 23358888543
No 117
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.80 E-value=1.7 Score=32.39 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=32.4
Q ss_pred CCcccccccccc-ccCceeEEecccCceechhhhHHHHh--cCCCCCCcCcCC
Q 047079 102 YGLECAICLAEF-EDDNILRLLTVCYHVFHQECIDLWLE--SHKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~-~~~~~~r~lp~C~H~Fh~~CI~~Wl~--~~~tCP~CR~~~ 151 (296)
.+..|.||...- .+++.+..-..|.-.||..|+..-+. ..-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 457899998763 22334444445889999999986432 233599996544
No 118
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.73 E-value=1.9 Score=30.74 Aligned_cols=44 Identities=34% Similarity=0.657 Sum_probs=28.4
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhc-----CCCCCCcCc
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-----HKTCPVCRS 149 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~ 149 (296)
.|.||...-..++.+. --.|...||..|+++=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~-CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEE-CTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEE-cCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4677775533344444 3458999999999854432 235888864
No 119
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.23 E-value=1.2 Score=33.24 Aligned_cols=49 Identities=24% Similarity=0.537 Sum_probs=33.5
Q ss_pred Ccccccccccccc-CceeEEecccCceechhhhHHHHhc--------CCCCCCcCcCC
Q 047079 103 GLECAICLAEFED-DNILRLLTVCYHVFHQECIDLWLES--------HKTCPVCRSDL 151 (296)
Q Consensus 103 ~~~C~ICl~~~~~-~~~~r~lp~C~H~Fh~~CI~~Wl~~--------~~tCP~CR~~~ 151 (296)
+..|.||...-.. +..+.+--.|...||..|+++=|.. .-.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4679999876432 2334444459999999999876531 23599996654
No 120
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=64.16 E-value=4.7 Score=37.95 Aligned_cols=47 Identities=26% Similarity=0.577 Sum_probs=31.6
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHh---c--CCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---S--HKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~--~~tCP~CR~~~~~ 153 (296)
.+.|+|-+..|..+ +|... |.|.-|.+ +..||. + .-.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~P--vRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccccc--CcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCH
Confidence 36799888887766 66665 99984433 344553 2 3359999887754
No 121
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=63.34 E-value=2 Score=30.80 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.4
Q ss_pred cccccccccccHHHHHHHh
Q 047079 237 ELEDRHTLRLPENVKLKIL 255 (296)
Q Consensus 237 e~~er~tlrLpe~v~~~~~ 255 (296)
....+|+||||++.+++|.
T Consensus 17 r~~~kf~LRlP~eL~~~L~ 35 (69)
T 3qoq_A 17 RTADKFVVRLPEGMREQIA 35 (69)
T ss_dssp TTSEEEEEECCTTHHHHHH
T ss_pred ccCCceEEECCHHHHHHHH
Confidence 3467999999999986664
No 122
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=62.66 E-value=5.4 Score=37.44 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=31.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHh---c--CCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLE---S--HKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~---~--~~tCP~CR~~~~~ 153 (296)
.+.|+|-+..|..+ +|... |.|.-|.+ +..||. . .-.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~-C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVT-CTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETT-CCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC--CcCCC-CCCCccCC-HHHHHHHHhhCCCeECCCCCcccCH
Confidence 36799888888766 66665 99983333 344543 2 3359999988754
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.14 E-value=6.9 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=31.2
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-+.+..++.+.. -+..||.+| .+|-.|...|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccC
Confidence 3579999999987776653 578999888 56999988886
No 124
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=60.76 E-value=2.2 Score=37.53 Aligned_cols=45 Identities=33% Similarity=0.631 Sum_probs=26.7
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhc-----CCCCCCcCc
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES-----HKTCPVCRS 149 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~-----~~tCP~CR~ 149 (296)
..|.+|...=..+..+.+ -.|...||..|+++=|.. .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~C-D~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMC-DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEEC-SSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEc-CCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 358888765333444444 359999999999954432 235999964
No 125
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.66 E-value=7.5 Score=31.14 Aligned_cols=44 Identities=25% Similarity=0.526 Sum_probs=30.4
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHH------h-----cCCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL------E-----SHKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl------~-----~~~tCP~CR~ 149 (296)
.+..|.||.+. ++ +..--.|-..||.+||++=+ + ..-.|++|+.
T Consensus 56 ~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45679999864 44 43444699999999999742 1 1236999953
No 126
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.95 E-value=8.3 Score=27.54 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=31.0
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+-|-+.+..++.+.. -+..||.+| .+|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 4579999999987776654 478999888 56999988875
No 127
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.84 E-value=10 Score=25.94 Aligned_cols=38 Identities=16% Similarity=0.433 Sum_probs=29.1
Q ss_pred ccccccccccccCc-eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+.|-+.+...+ .+.. -+..||.+| .+|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY---KGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE---TTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE---CcCeecccC--------CcccccCCccC
Confidence 57999999998764 3332 478999887 56999988875
No 128
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=59.13 E-value=7.4 Score=27.22 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=25.8
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.|+.|-+.+..++.+.. -+..||..| .+|-.|+..|.
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCC
Confidence 47888888776665543 477888777 45888877775
No 129
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=56.32 E-value=1.9 Score=28.70 Aligned_cols=41 Identities=20% Similarity=0.524 Sum_probs=28.2
Q ss_pred ccccccccCceeEEecccCceechhhhHHHH---hcCCCCCCcCc
Q 047079 108 ICLAEFEDDNILRLLTVCYHVFHQECIDLWL---ESHKTCPVCRS 149 (296)
Q Consensus 108 ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl---~~~~tCP~CR~ 149 (296)
||......+..+..-. |..-||..|+..-- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~-C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTT-TCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCC-CCccccccccCCCcccCCCcEECcCCCC
Confidence 6877665446666554 99999999987432 23456888864
No 130
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.69 E-value=2.5 Score=32.45 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=30.2
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCcCC
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRSDL 151 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~~~ 151 (296)
.|.||...-.+...+..- .|...||..|+++=|.. .-.||.|+...
T Consensus 56 ~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCD-TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECS-SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECC-CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 577787664444445444 59999999999865543 33588885543
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.59 E-value=10 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=23.0
Q ss_pred cccccccccccc-------CceeEEecccCceechhhhHHH
Q 047079 104 LECAICLAEFED-------DNILRLLTVCYHVFHQECIDLW 137 (296)
Q Consensus 104 ~~C~ICl~~~~~-------~~~~r~lp~C~H~Fh~~CI~~W 137 (296)
..|.||+..-.. ++.+... .|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~-~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA-DCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS-SSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeC-CCCCccchhhCCCh
Confidence 369999875421 2344444 49999999999865
No 132
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.43 E-value=8.8 Score=28.48 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=24.6
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHH
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW 137 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W 137 (296)
...|.+|...|..-..-.--..||++||..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 35799999999754322222359999999996654
No 133
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.11 E-value=12 Score=25.70 Aligned_cols=39 Identities=28% Similarity=0.554 Sum_probs=28.7
Q ss_pred CccccccccccccCc-eeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-+.+...+ .+.. -+..||..| .+|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA---LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC---SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE---CCCeEcccC--------CcccccCCcCC
Confidence 357999998887643 3332 478999888 56999988884
No 134
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.73 E-value=13 Score=25.73 Aligned_cols=41 Identities=17% Similarity=0.449 Sum_probs=29.9
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+-|-..+...+.+... -+..||..| .+|-.|...|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 46799999998864443221 578999888 568899888753
No 135
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=54.12 E-value=4.5 Score=28.02 Aligned_cols=42 Identities=33% Similarity=0.850 Sum_probs=29.3
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHH-hcCCCCCCc
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL-ESHKTCPVC 147 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl-~~~~tCP~C 147 (296)
..|-.|...|.+.... .-+.|++.||.+| |.++ +.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y-~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVY-VCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEE-CCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccE-ECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4699999999654333 3456999999999 3332 344569988
No 136
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=53.61 E-value=3.1 Score=28.59 Aligned_cols=42 Identities=26% Similarity=0.597 Sum_probs=26.6
Q ss_pred CccccccccccccCceeEEecc--cC-ceechhhhHHHHhc----CCCCCCcCc
Q 047079 103 GLECAICLAEFEDDNILRLLTV--CY-HVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
..-| ||.... .++.+.. -. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~C-D~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGC-DNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEEC-SCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEe-eCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4557 998764 3444432 23 55 699999998 332 335998854
No 137
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.58 E-value=2.9 Score=28.75 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=26.0
Q ss_pred CccccccccccccCceeEEecc--cC-ceechhhhHHHHhc----CCCCCCcCc
Q 047079 103 GLECAICLAEFEDDNILRLLTV--CY-HVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~--C~-H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
..-| ||.... .+..+.. -. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi~C-D~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGC-DNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEEC-SCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEe-CCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4557 898764 3444432 23 44 689999998 432 335888854
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.52 E-value=9.2 Score=30.20 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=23.4
Q ss_pred CccccccccccccCceeEEecccCceechhhhHH
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDL 136 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~ 136 (296)
...|.+|...|..-..-.--..||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3579999999975432112225999999999543
No 139
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=53.40 E-value=16 Score=26.15 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=23.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047079 15 AENYASPPITIILTVTLLVFFFVGFFSVYFCRCF 48 (296)
Q Consensus 15 ~~~~~~~~~~Ivl~vli~v~~~l~~~~i~~~~~~ 48 (296)
+..|+...+-|.-+++..++|++++++++..+|.
T Consensus 8 PF~YDY~tLRiGGLifA~vLfi~GI~iilS~Kck 41 (72)
T 2jo1_A 8 PFTYDYQSLQIGGLVIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp GGGCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHhhccchHHHHHHHHHHHHHHHcCccc
Confidence 4456666677777777777777888877765553
No 140
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=53.15 E-value=2.4 Score=33.62 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=30.5
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSD 150 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~ 150 (296)
..|..|-..|..-..-.--..||.+||..|..........|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 57999999997543222222599999999987766556668777543
No 141
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=52.73 E-value=12 Score=26.60 Aligned_cols=48 Identities=23% Similarity=0.520 Sum_probs=31.0
Q ss_pred CCcccccccccc-ccCceeEEecccCceechhhhHHHHh--cCCCCCCcCc
Q 047079 102 YGLECAICLAEF-EDDNILRLLTVCYHVFHQECIDLWLE--SHKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~-~~~~~~r~lp~C~H~Fh~~CI~~Wl~--~~~tCP~CR~ 149 (296)
.+..|.||...- .+++.+..--.|.-.||..|+..-.. ..-.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 457899998763 23334444446999999999875322 1224888854
No 142
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.69 E-value=11 Score=27.41 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHH
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDL 136 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~ 136 (296)
....|.+|...|..-..-.--..||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999999975432112225999999999654
No 143
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.69 E-value=12 Score=25.64 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=29.5
Q ss_pred CccccccccccccCc-eeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDN-ILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~-~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-..+...+ .+. .-+..||..| .+|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE---YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC---STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE---ECccccCccc--------CeECCCCCcCCC
Confidence 357999999988753 333 2578999887 568899888753
No 144
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=52.63 E-value=11 Score=27.50 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=24.7
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHH
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW 137 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W 137 (296)
....|.+|...|..-..-.--..||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345799999999764321122259999999996543
No 145
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=52.12 E-value=11 Score=26.62 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=22.3
Q ss_pred ccccccccccccCceeEEecccCceechhhhH
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECID 135 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~ 135 (296)
..|.+|...|..-..-.--..||++||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999987543211122599999999954
No 146
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.68 E-value=16 Score=25.66 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=30.1
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-..+...+.+.. .-+..||..| .+|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 3579999999987654322 2578999888 569999888853
No 147
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=51.64 E-value=17 Score=24.61 Aligned_cols=41 Identities=17% Similarity=0.484 Sum_probs=30.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-..+...+.+... -+..||..|. +|-.|...|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 45799999999877654322 4788998884 68899888753
No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=51.54 E-value=9.1 Score=30.75 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=24.1
Q ss_pred CCccccccccccc-cCceeEEecccCceechhhhH
Q 047079 102 YGLECAICLAEFE-DDNILRLLTVCYHVFHQECID 135 (296)
Q Consensus 102 ~~~~C~ICl~~~~-~~~~~r~lp~C~H~Fh~~CI~ 135 (296)
....|++|...|. ....-+.-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5678999999993 333333444599999998844
No 149
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=51.52 E-value=3.5 Score=28.63 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=26.9
Q ss_pred CCccccccccccccCceeEEecc--cC-ceechhhhHHHH--hcCCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLLTV--CY-HVFHQECIDLWL--ESHKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~Fh~~CI~~Wl--~~~~tCP~CR~ 149 (296)
...-| ||.... .++.+..- . |. ..||..|+..-- ...-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD-~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCD-NEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECS-CTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCeeeee-CCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34567 998763 35444422 3 33 799999998211 12346999854
No 150
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.11 E-value=12 Score=26.63 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=30.9
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-..+...+.+.. -+..||..| .+|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 4579999999877766552 578999888 568899888754
No 151
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=50.45 E-value=39 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.3
Q ss_pred CchHHHHHHHHHHHH
Q 047079 20 SPPITIILTVTLLVF 34 (296)
Q Consensus 20 ~~~~~Ivl~vli~v~ 34 (296)
.|..+|++.++..++
T Consensus 7 vp~WiIi~svl~GLL 21 (54)
T 2l8s_A 7 VPLWVILLSAFAGLL 21 (54)
T ss_dssp CCTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 344444444444333
No 152
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.97 E-value=12 Score=27.68 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=24.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHH
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW 137 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W 137 (296)
....|.+|...|..-..-.--..||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 345799999999754321112259999999996543
No 153
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.16 E-value=17 Score=24.88 Aligned_cols=39 Identities=21% Similarity=0.476 Sum_probs=29.1
Q ss_pred Ccccccccccccc--C-ceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFED--D-NILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~--~-~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+-|-+.+.. + ..+. .-+..||.+| .+|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~---a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS---FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE---CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE---ECCcccCccc--------CEeccCCCcCC
Confidence 3579999999885 2 3333 2588999888 56999988885
No 154
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.42 E-value=13 Score=26.99 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=21.8
Q ss_pred CCccccccccccccCceeEEecccCceechhh
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQEC 133 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~C 133 (296)
....|.+|...|..-..----..||.+||..|
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 34579999999965431111124999999988
No 155
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=48.26 E-value=25 Score=26.35 Aligned_cols=51 Identities=20% Similarity=0.450 Sum_probs=35.1
Q ss_pred CCcccccccccccc---CceeEEecccCceechhhhHHHH-hcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFED---DNILRLLTVCYHVFHQECIDLWL-ESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~---~~~~r~lp~C~H~Fh~~CI~~Wl-~~~~tCP~CR~~~~ 152 (296)
....|.||-+++-. ++....-..|+--.|..|.+-=. ..++.||.|...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34689999988653 32222222478888999987543 46788999987775
No 156
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.08 E-value=20 Score=25.94 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=30.9
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+-|-..+...+.+. .-+..||..| .+|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCC--------CeeCCCCCCCCC
Confidence 357999999998776654 2678999888 458889887754
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.12 E-value=11 Score=32.41 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=23.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHH
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDL 136 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~ 136 (296)
+..|.+|...|..-..-.--..||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999975431111225999999999544
No 158
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=47.09 E-value=8.9 Score=27.12 Aligned_cols=40 Identities=30% Similarity=0.570 Sum_probs=30.4
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-+.+..++.+.. -+..||.+| .+|-.|...|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 3579999999987776543 578999888 458899888753
No 159
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=46.94 E-value=12 Score=29.23 Aligned_cols=39 Identities=26% Similarity=0.542 Sum_probs=30.7
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+-|-..+.....+.. -+..||..| .+|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999999886654543 688999888 56999998885
No 160
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.90 E-value=21 Score=24.81 Aligned_cols=39 Identities=21% Similarity=0.492 Sum_probs=29.0
Q ss_pred Ccccccccccccc---CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFED---DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~---~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-..+.. ...+.. -+..||.+| .+|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a---~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF---QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE---TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE---CCcccCccc--------CChhhCCCcCC
Confidence 3579999999885 233332 578999888 56999988875
No 161
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.90 E-value=3 Score=32.40 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=29.6
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhc----CCCCCCcCc
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLES----HKTCPVCRS 149 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~----~~tCP~CR~ 149 (296)
.|.||...-..++.+..- .|...||..|+++=|.. .-.||.|+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCceEEcC-CCCccccccccCCCccCCCCCCeECccccc
Confidence 588887765555555554 49999999999864432 224877754
No 162
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.36 E-value=12 Score=32.55 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=24.4
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHH
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLW 137 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~W 137 (296)
+..|.+|...|..-..-.--..||++||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999999854322222359999999996543
No 163
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.87 E-value=47 Score=22.43 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=5.4
Q ss_pred CchHHHHHHHHHH
Q 047079 20 SPPITIILTVTLL 32 (296)
Q Consensus 20 ~~~~~Ivl~vli~ 32 (296)
.|..+|++.++..
T Consensus 10 vp~wiIi~svl~G 22 (54)
T 2knc_A 10 IPIWWVLVGVLGG 22 (54)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 3444444444433
No 164
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.02 E-value=20 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=29.1
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-..+. ++.+. .-+..||.+| ..|-.|+..|.
T Consensus 25 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV---ALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE---ETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCccCCCEec-ceEEE---ECCccccccC--------CccCCCCCCCC
Confidence 457999999985 44443 2689999888 56999998886
No 165
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.33 E-value=24 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.558 Sum_probs=28.8
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
..|+.|-..+. +..+.. -+..||.+| .+|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCCC
Confidence 47999999888 444442 578999888 569999888753
No 166
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.09 E-value=18 Score=25.41 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=28.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-+.+... .+. .-+..||.+| .+|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FVK---LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSS-CEE---CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCc-EEE---ECcceeCcCc--------CeeCCCCCCCC
Confidence 35799999988753 333 2678999888 46999988874
No 167
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.06 E-value=24 Score=23.91 Aligned_cols=39 Identities=21% Similarity=0.489 Sum_probs=28.9
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-+.+.. ..+.. -+..||.+| .+|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCC
Confidence 3579999998874 44432 578999888 469999888763
No 168
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.78 E-value=16 Score=25.76 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
....|+-|-..+. +..+. .-+..||.+| .+|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 3457999999888 44443 2578899887 579999888863
No 169
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.59 E-value=3.5 Score=40.23 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=32.2
Q ss_pred Cccccccccccc-cCceeEEecccCceechhhhHHHHh-----cCCCCCCcCcC
Q 047079 103 GLECAICLAEFE-DDNILRLLTVCYHVFHQECIDLWLE-----SHKTCPVCRSD 150 (296)
Q Consensus 103 ~~~C~ICl~~~~-~~~~~r~lp~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~ 150 (296)
..-| ||...+. .+..+.+-. |.-.||..|+.---. ....||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDI-CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTT-TCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccC-CCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3456 9988775 455676664 999999999864322 24579999754
No 170
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.10 E-value=22 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=29.4
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-+.+.. ..+. .-+..||.+| .+|-.|...|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 3579999999885 3333 3678999888 569999888853
No 171
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.70 E-value=13 Score=21.91 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=21.4
Q ss_pred ccccccccccccCceeEEecccCceechhhh
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECI 134 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI 134 (296)
..|+.|-..+...+.+.. -|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 469999988887766552 5789999884
No 172
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.62 E-value=26 Score=25.50 Aligned_cols=23 Identities=13% Similarity=0.456 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047079 23 ITIILTVTLLVFFFVGFFSVYFCR 46 (296)
Q Consensus 23 ~~Ivl~vli~v~~~l~~~~i~~~~ 46 (296)
+.|++.++.+ +++++++++++.+
T Consensus 11 ~~Iv~gvi~g-illiGllllliwk 33 (79)
T 2knc_B 11 LVVLLSVMGA-ILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHH-HHHHHHHHHHHHH
Confidence 4444443333 3334444444333
No 173
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.33 E-value=13 Score=24.99 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=28.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-..+. ++.+. .-+..||..| .+|-.|...|.
T Consensus 5 ~~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVN---AMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCEEC---CTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEec-ceEEE---ECccccccCc--------CEECCCCCCCC
Confidence 357999999988 44433 2578999887 56999988885
No 174
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.85 E-value=26 Score=23.72 Aligned_cols=38 Identities=18% Similarity=0.482 Sum_probs=28.4
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+-|-+.+.. +.+.. -+..||.+| .+|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 3579999998874 34432 578999888 46999988885
No 175
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.79 E-value=3.5 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.683 Sum_probs=11.9
Q ss_pred CccccccccccccCcee
Q 047079 103 GLECAICLAEFEDDNIL 119 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~ 119 (296)
+..|+||+..|...+.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 46788888887765543
No 176
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.65 E-value=15 Score=26.07 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCccccccccccccCceeEEeccc-CceechhhhHH
Q 047079 102 YGLECAICLAEFEDDNILRLLTVC-YHVFHQECIDL 136 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C-~H~Fh~~CI~~ 136 (296)
+..-|.||.++ ..+|.+. | +-+||..|..+
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 34569999877 5588887 9 88999999555
No 177
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.94 E-value=5.7 Score=37.25 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHH
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWL 138 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl 138 (296)
...|.+|...|..-..-.-...||++||..|...++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 457999999987432111122499999999988764
No 178
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=39.93 E-value=49 Score=21.13 Aligned_cols=25 Identities=8% Similarity=0.443 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047079 23 ITIILTVTLLVFFFVGFFSVYFCRCF 48 (296)
Q Consensus 23 ~~Ivl~vli~v~~~l~~~~i~~~~~~ 48 (296)
..|++. +++.+++++++.+++.+.+
T Consensus 10 ~~Iv~g-vi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 10 LVVLLS-VMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred eehHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344444 4444555666666655544
No 179
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=39.72 E-value=63 Score=20.61 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=5.8
Q ss_pred CchHHHHHHHHHHH
Q 047079 20 SPPITIILTVTLLV 33 (296)
Q Consensus 20 ~~~~~Ivl~vli~v 33 (296)
.|..+|++.++..+
T Consensus 8 vp~wiIi~s~l~GL 21 (42)
T 2k1a_A 8 IPIWWVLVGVLGGL 21 (42)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 34444444444333
No 180
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.58 E-value=28 Score=23.52 Aligned_cols=38 Identities=24% Similarity=0.558 Sum_probs=28.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-..+... .+. .-+..||.+| .+|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GVT---YREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS-EEE---SSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccc-eEE---ECccccCCCC--------CccCCCCCcCC
Confidence 35799999998743 333 2678999888 56999988885
No 181
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=39.06 E-value=15 Score=28.36 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=22.9
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~ 151 (296)
.|+.|-..+...+.+.. .-++.||..| .+|-.|.+.|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 58888777765433211 1467777766 4577777666
No 182
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=38.64 E-value=16 Score=25.79 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=22.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047079 15 AENYASPPITIILTVTLLVFFFVGFFSVYFCRC 47 (296)
Q Consensus 15 ~~~~~~~~~~Ivl~vli~v~~~l~~~~i~~~~~ 47 (296)
+..|+...+-|.-+++..++|+++++++...+|
T Consensus 9 pF~YDY~tLRigGLifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 9 PFYYDWESLQLGGLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CcccchHHheecchhhHHHHHHHHHHHHHcCcc
Confidence 445666666677777777777778777775444
No 183
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=38.31 E-value=27 Score=24.07 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=29.0
Q ss_pred Ccccccccccccc----CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFED----DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~----~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+-|-..+.. ...+.. =+..||..| .+|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY---EGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE---TTEEEETTT--------CBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEE---CcceeCccc--------CEehhcCCCCC
Confidence 3579999999884 233432 478999888 56999988885
No 184
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=38.06 E-value=11 Score=28.85 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=10.7
Q ss_pred eechhhhHHHHh
Q 047079 128 VFHQECIDLWLE 139 (296)
Q Consensus 128 ~Fh~~CI~~Wl~ 139 (296)
-||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 185
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=37.65 E-value=11 Score=28.75 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=10.7
Q ss_pred eechhhhHHHHh
Q 047079 128 VFHQECIDLWLE 139 (296)
Q Consensus 128 ~Fh~~CI~~Wl~ 139 (296)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 186
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=37.19 E-value=13 Score=29.40 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=14.7
Q ss_pred ccccccccccHHHHHHHh
Q 047079 238 LEDRHTLRLPENVKLKIL 255 (296)
Q Consensus 238 ~~er~tlrLpe~v~~~~~ 255 (296)
+..+|+||||++.+.+|.
T Consensus 17 ~~~kf~LRLP~eLh~~La 34 (120)
T 1u9p_A 17 GGPQFNLRWPREVLDLVR 34 (120)
T ss_dssp TCCEEEEECCHHHHHHHH
T ss_pred CCCeeEEeCCHHHHHHHH
Confidence 457999999999986654
No 187
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=37.05 E-value=44 Score=24.25 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=24.7
Q ss_pred cccccccccccc-CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFED-DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~-~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+.|-+.+.. +..+.. =+..||..| .+|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 44 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY---KNRFWHDTC--------FRCAKCLHPLA 44 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE---TTEEEETTT--------CCCSSSCCCTT
T ss_pred CcCcccCCcccCCceEEEE---CccChhhcC--------CcccccCCCCC
Confidence 468888887764 444432 367788766 45777777763
No 188
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=36.91 E-value=19 Score=29.79 Aligned_cols=43 Identities=28% Similarity=0.638 Sum_probs=30.1
Q ss_pred CCccccccccccccCceeEEec--ccCceechhhhHHHHhc----------CCCCCCcC
Q 047079 102 YGLECAICLAEFEDDNILRLLT--VCYHVFHQECIDLWLES----------HKTCPVCR 148 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp--~C~H~Fh~~CI~~Wl~~----------~~tCP~CR 148 (296)
.+..|.||-+. + .+.+-- .|...||.+||+.++.. .-.|=+|.
T Consensus 78 ~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 56789999864 3 343333 48899999999999743 22588884
No 189
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.89 E-value=22 Score=24.89 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=27.9
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+.|-+.+. +..+. .-+..||.+| .+|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEE---ECCceecccc--------CCccCCCCccC
Confidence 47999999888 44443 2578899887 56999988885
No 190
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=36.31 E-value=6.1 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=30.8
Q ss_pred ccccccccccc-cCceeEEecccCceechhhhHHHHh-----cCCCCCCcCcC
Q 047079 104 LECAICLAEFE-DDNILRLLTVCYHVFHQECIDLWLE-----SHKTCPVCRSD 150 (296)
Q Consensus 104 ~~C~ICl~~~~-~~~~~r~lp~C~H~Fh~~CI~~Wl~-----~~~tCP~CR~~ 150 (296)
.-| ||...+. ++..|..-. |.-.||..|+.---. ....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~-C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDA-CKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTT-TCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCC-CCCCEecccccccccccCCCCEEECCCCccc
Confidence 445 8987765 345666554 999999999964321 34579999654
No 191
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=35.56 E-value=21 Score=33.69 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=31.0
Q ss_pred CCccccccccccccCceeEEe-cccCceechhhhHHHHh----------cCCCCCCcCc
Q 047079 102 YGLECAICLAEFEDDNILRLL-TVCYHVFHQECIDLWLE----------SHKTCPVCRS 149 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~l-p~C~H~Fh~~CI~~Wl~----------~~~tCP~CR~ 149 (296)
.+..|.||-+. ++.+-+- +.|...||.+||+.++. ..-.|=+|.-
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 56789999864 3333322 15899999999999982 1336888853
No 192
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=34.52 E-value=66 Score=22.48 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=13.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHH
Q 047079 13 PHAENYASPPITIILTVTLLVFF 35 (296)
Q Consensus 13 p~~~~~~~~~~~Ivl~vli~v~~ 35 (296)
--++.|-+-++..++.+++++|+
T Consensus 19 KvaPGWGTtplMgv~m~Lf~vFl 41 (65)
T 3arc_H 19 KVAPGWGTTPLMAVFMGLFLVFL 41 (65)
T ss_dssp CCBSTTTTHHHHHHHHHHHHHHH
T ss_pred cccCCccChhHHHHHHHHHHHHH
Confidence 33556776666555555555554
No 193
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=33.87 E-value=15 Score=26.47 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047079 15 AENYASPPITIILTVTLLVFFFVGFFSVYFCRC 47 (296)
Q Consensus 15 ~~~~~~~~~~Ivl~vli~v~~~l~~~~i~~~~~ 47 (296)
+..|+...+-|.-+++..++|+++++++...+|
T Consensus 11 pF~YDY~tLRigGLifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 11 RFTYDYYRLRVVGLIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CcccchHHheeccchhHHHHHHHHHHHHHcCcc
Confidence 456666667777777777777778777775544
No 194
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=33.79 E-value=15 Score=26.46 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=13.6
Q ss_pred cccccccccHHHHHHHh
Q 047079 239 EDRHTLRLPENVKLKIL 255 (296)
Q Consensus 239 ~er~tlrLpe~v~~~~~ 255 (296)
...|+||||++++.++.
T Consensus 4 ~~~f~lRi~~eLh~~L~ 20 (76)
T 1mnt_A 4 DPHFNFRMPMEVREKLK 20 (76)
T ss_dssp SCCCEEECCHHHHHHHH
T ss_pred CCeeeeeCCHHHHHHHH
Confidence 45799999999976554
No 195
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.06 E-value=4.9 Score=29.17 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=15.6
Q ss_pred ccCceechhhhHHHHhcCCCC
Q 047079 124 VCYHVFHQECIDLWLESHKTC 144 (296)
Q Consensus 124 ~C~H~Fh~~CI~~Wl~~~~tC 144 (296)
.|+|.||..|...|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 5999999999999854 455
No 196
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.00 E-value=44 Score=25.18 Aligned_cols=38 Identities=26% Similarity=0.700 Sum_probs=27.5
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+-|-..+.....+.. -+..||..| .+|-.|...|.
T Consensus 4 ~~C~~C~~~I~~~~~~~a---~~~~wH~~C--------F~C~~C~~~L~ 41 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKA---IDQYWHEDC--------LSCDLCGCRLG 41 (114)
T ss_dssp BCBSSSCSCBCSSEEEEC---SSSEECTTT--------CCCSSSCSCCC
T ss_pred CCCcCCCCeeCCcEEEEE---CchhHHHhc--------CcccccCCchh
Confidence 468889888876544442 577888777 56888888775
No 197
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.52 E-value=43 Score=23.08 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=28.3
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+-|-..+.. ..+. .-+..||.+| .+|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVLE---AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCBC---CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeEE---eCCCCCCCCc--------CEeCCCCCCCC
Confidence 3579999988875 3333 3678999888 56999988875
No 198
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=32.01 E-value=67 Score=25.64 Aligned_cols=26 Identities=15% Similarity=0.444 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047079 22 PITIILTVTLLVFFFVGFFSVYFCRC 47 (296)
Q Consensus 22 ~~~Ivl~vli~v~~~l~~~~i~~~~~ 47 (296)
.+.|++++.+..||++++++-|++-.
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSK 78 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSK 78 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhh
Confidence 46777878888888888888887654
No 199
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.89 E-value=47 Score=23.14 Aligned_cols=38 Identities=39% Similarity=0.711 Sum_probs=28.7
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-..+.+ ..+.. -+..||..| .+|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHh--------cCcccCCCccC
Confidence 4579999999874 33432 578999888 56999988885
No 200
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.83 E-value=30 Score=24.24 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=27.7
Q ss_pred cccccccccccc-CceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFED-DNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~-~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+.|-..+.. +..+.. -+..||..| ..|-.|...|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY---EDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC---SSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEe---CCccccccC--------CeecCCCCccC
Confidence 479999999884 333332 478899887 56889988875
No 201
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.04 E-value=56 Score=22.56 Aligned_cols=38 Identities=26% Similarity=0.515 Sum_probs=28.8
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
..|+.|-..+.. +.+.. -+..||..| .+|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 579999999886 34432 578999888 569999888853
No 202
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.61 E-value=37 Score=25.96 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=20.0
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~ 151 (296)
.|+.|-..+...+.+.. .-++.||..| .+|-.|...|
T Consensus 68 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 104 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 104 (131)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEEEGGG--------CBCTTTCCBC
T ss_pred ChhhcCCccCccceeEe--eCCceECccC--------cccCCCCCCC
Confidence 56666666654332211 1456666666 4566666655
No 203
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.61 E-value=38 Score=27.97 Aligned_cols=38 Identities=26% Similarity=0.621 Sum_probs=24.3
Q ss_pred cccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 105 ECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 105 ~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.|+.|-..+...+.+.. .-++.||..| .+|-.|...|.
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCCC
Confidence 58888777765443221 2477888777 46777776664
No 204
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.50 E-value=39 Score=27.30 Aligned_cols=39 Identities=28% Similarity=0.662 Sum_probs=25.2
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|..|-..+...+.+.. .-++.||.+| .+|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~--a~~~~~H~~C--------F~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR--AQDFVYHLHC--------FACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE--ETTEEEEGGG--------CBCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE--cCCceEeeCC--------CcCCCCCCCCC
Confidence 467778777765543322 2467888777 36878877764
No 205
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.43 E-value=27 Score=28.55 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCccccccccccc--cCceeEEecccCceechhhh
Q 047079 102 YGLECAICLAEFE--DDNILRLLTVCYHVFHQECI 134 (296)
Q Consensus 102 ~~~~C~ICl~~~~--~~~~~r~lp~C~H~Fh~~CI 134 (296)
.+..|++|...|. .+-..... .|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhcccc
Confidence 4578999999864 33334444 59999999996
No 206
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.36 E-value=39 Score=25.83 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=0.0
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDL 151 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~ 151 (296)
....|+-|-..+.....+. .-+..||.+| .+|-.|+..|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~---a~~~~wH~~C--------F~C~~C~~~L 42 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQL 42 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEE---ETTEEECHHH--------HCCSSSCCCT
T ss_pred CCCCCcccCCEeCCcEEEE---ECCceeHhhC--------CCcCCCCCcc
No 207
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.49 E-value=23 Score=27.03 Aligned_cols=40 Identities=28% Similarity=0.647 Sum_probs=25.5
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|++|-.+++-. =++.+|..|=.. +.....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHH
Confidence 5799998776532 234445566332 244556999988875
No 208
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.08 E-value=7 Score=28.65 Aligned_cols=17 Identities=24% Similarity=0.639 Sum_probs=13.6
Q ss_pred EecccCceechhhhHHH
Q 047079 121 LLTVCYHVFHQECIDLW 137 (296)
Q Consensus 121 ~lp~C~H~Fh~~CI~~W 137 (296)
.-|.|++.||..|-..|
T Consensus 45 ~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECTTTCCEECSSSCSBC
T ss_pred EeCCCCCccccccCCch
Confidence 34469999999998887
No 209
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.91 E-value=13 Score=28.67 Aligned_cols=23 Identities=30% Similarity=0.692 Sum_probs=14.4
Q ss_pred ccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079 124 VCYHVFHQECIDLWLESHKTCPVCRSDL 151 (296)
Q Consensus 124 ~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~ 151 (296)
.||+.|. .=+.....||.|+..-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3888881 1123345799998754
No 210
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=26.63 E-value=64 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCC
Q 047079 1 MSSTTYPSSSYPPH 14 (296)
Q Consensus 1 mss~~~~~~s~~p~ 14 (296)
||.+..+|++|.|.
T Consensus 4 ~~~~~~~~~~~~~~ 17 (119)
T 2kog_A 4 MSATAATVPPAAPA 17 (119)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
Confidence 55555555555443
No 211
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.27 E-value=16 Score=25.88 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=15.1
Q ss_pred hHHHHhcCCCCCCcCcCCCCC
Q 047079 134 IDLWLESHKTCPVCRSDLDLP 154 (296)
Q Consensus 134 I~~Wl~~~~tCP~CR~~~~~~ 154 (296)
++.||..--.||+|+.+|...
T Consensus 1 md~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEEC
T ss_pred CChHHHhheeCCCCCCcCeEe
Confidence 356777778899999888643
No 212
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.95 E-value=9.6 Score=34.90 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=31.8
Q ss_pred CccccccccccccCceeEE---ecccCceechhhhHHHHhcCCCCCCcCcC
Q 047079 103 GLECAICLAEFEDDNILRL---LTVCYHVFHQECIDLWLESHKTCPVCRSD 150 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~---lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~ 150 (296)
...|+||-..-... .++. ..+=.|.+|.-|-..|-..+..||.|-..
T Consensus 182 ~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 35799998764333 2221 11123678889999998889999999654
No 213
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.73 E-value=52 Score=21.95 Aligned_cols=38 Identities=21% Similarity=0.507 Sum_probs=28.8
Q ss_pred ccccccccccccC-ceeEEecccCceec--hhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDD-NILRLLTVCYHVFH--QECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~-~~~r~lp~C~H~Fh--~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+-|-..+..+ ..+.. -+..|| .+| .+|-.|+.+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a---~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY---NNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE---TTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE---CCCccCCCCCC--------EECCCCCCcCC
Confidence 3699999998864 44442 578999 888 56889988885
No 214
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.72 E-value=1.3e+02 Score=19.30 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047079 25 IILTVT 30 (296)
Q Consensus 25 Ivl~vl 30 (296)
|+..++
T Consensus 12 IA~gVV 17 (44)
T 2l2t_A 12 IAAGVI 17 (44)
T ss_dssp HHHHHH
T ss_pred EEEeeh
Confidence 333333
No 215
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.67 E-value=56 Score=24.79 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=19.8
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
-..|..|...+.... ... .=+..||..|-.+ .....|..|...+.
T Consensus 30 CF~C~~C~~~L~~~~-f~~--~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEI-YVM--VNDKPVCKPCYVK--NHAVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSE-EEE--ETTEEEEHHHHHH--HSCCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCE-EEe--ECCEEechHHhCc--CcCccCcccCCcCC
Confidence 355555555554321 111 1345555555433 12334666655554
No 216
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=25.55 E-value=1.1e+02 Score=22.02 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 047079 42 VYFCRCF 48 (296)
Q Consensus 42 i~~~~~~ 48 (296)
|+.|.|+
T Consensus 31 i~gcwcy 37 (90)
T 1zza_A 31 ILGCWCY 37 (90)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 3345554
No 217
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.30 E-value=48 Score=22.93 Aligned_cols=37 Identities=24% Similarity=0.556 Sum_probs=28.0
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+.|-..+... .+. .-+..||..| .+|-.|...|.
T Consensus 16 ~~C~~C~~~I~~~-~v~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GVT---YRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CEE---SSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc-EEE---ECCchhhhhh--------CCcccCCCcCC
Confidence 5799999988653 333 2578999888 46999988884
No 218
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=25.15 E-value=17 Score=24.66 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=18.7
Q ss_pred ccccccccHHHHHH---HhccCcccccee
Q 047079 240 DRHTLRLPENVKLK---ILRGHNWTGSCI 265 (296)
Q Consensus 240 er~tlrLpe~v~~~---~~~~~~~~~s~~ 265 (296)
..+|+|||++.+++ +.....|++|.+
T Consensus 4 ~~~svrL~~el~~rL~~lA~~~~rs~s~l 32 (58)
T 2ay0_A 4 TTMGVMLDDATRERIKSAATRIDRTPHWL 32 (58)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCCHHHH
T ss_pred cceEeECCHHHHHHHHHHHHHHCcCHHHH
Confidence 35799999999743 445567877764
No 219
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.03 E-value=47 Score=27.19 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=30.3
Q ss_pred cCCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCCC
Q 047079 101 KYGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDLP 154 (296)
Q Consensus 101 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~~ 154 (296)
..-+.|..|...|....- . .=+..||..|-.+ .-...|..|...+...
T Consensus 85 ~~CF~C~~C~~~L~~~~f--~--~~g~~yC~~~y~~--~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCF--S--RGESVYCKDDFFK--RFGTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCE--E--ETTEEECHHHHHH--TTSCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCce--e--ECCEeeecCcccc--ccccccccCCCccCCC
Confidence 356788888888765432 1 1477777777543 2245688888777653
No 220
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.71 E-value=59 Score=19.59 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047079 26 ILTVTLLVFFFVGFFSVYF 44 (296)
Q Consensus 26 vl~vli~v~~~l~~~~i~~ 44 (296)
+.+++++..+.++||.+++
T Consensus 5 vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 5 TYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3334444444444555544
No 221
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.71 E-value=25 Score=28.50 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=14.8
Q ss_pred ccCceechhhhHHHHhcCCCCCCcCcCC
Q 047079 124 VCYHVFHQECIDLWLESHKTCPVCRSDL 151 (296)
Q Consensus 124 ~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~ 151 (296)
.|||.|-.. .....||.|..++
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCcccCC------CCCCcCCCCCCcc
Confidence 488888533 2234799998765
No 222
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=23.55 E-value=27 Score=21.57 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=11.9
Q ss_pred ccccccccHHHHHHH
Q 047079 240 DRHTLRLPENVKLKI 254 (296)
Q Consensus 240 er~tlrLpe~v~~~~ 254 (296)
.|+|++||++..+++
T Consensus 3 ~ritv~l~~~l~~~L 17 (45)
T 2cpg_A 3 KRLTITLSESVLENL 17 (45)
T ss_dssp EEEEEEEEHHHHHHH
T ss_pred ceEEEecCHHHHHHH
Confidence 479999999996443
No 223
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.78 E-value=58 Score=26.86 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=30.5
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
...|+.|-..+...+.+.. -+..||.+| .+|-.|...|.
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCC
Confidence 3569999999887766653 578999887 56889988885
No 224
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.69 E-value=44 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=17.4
Q ss_pred ccccccccccHHHHHHHhccCcccc
Q 047079 238 LEDRHTLRLPENVKLKILRGHNWTG 262 (296)
Q Consensus 238 ~~er~tlrLpe~v~~~~~~~~~~~~ 262 (296)
+.|=|. .||+++.+.|+.+.+|.+
T Consensus 17 D~eVF~-~LP~dIQ~Ells~~~~e~ 40 (48)
T 2kwv_A 17 DQEVFK-QLPADIQEEILSGKSREN 40 (48)
T ss_dssp CGGGTT-TSCHHHHHHHTTCCCSCC
T ss_pred CHHHHH-HCcHHHHHHHHhcchHHh
Confidence 345554 599999999997766653
No 225
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.68 E-value=45 Score=24.43 Aligned_cols=40 Identities=23% Similarity=0.618 Sum_probs=21.6
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
..|+.|-.++..+.. +.+|..|=.. +.....||-|.++|.
T Consensus 3 ~~CP~C~~~l~~~~~--------~~~C~~C~~~-~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--------TAHCETCAKD-FSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS--------EEECTTTCCE-EEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC--------ceECcccccc-CCCcccCcchhhHHH
Confidence 468888777654432 3334444222 122335888877764
No 226
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.35 E-value=69 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCC
Q 047079 102 YGLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLD 152 (296)
Q Consensus 102 ~~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~ 152 (296)
.-+.|..|...+..... . .=+..||..|-..- -...|..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~~f---~-~~g~~yC~~~y~~~--f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF---S-RGESVYCKDDFFKR--FGTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCE---E-SSSCEECHHHHHHH--HSCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCc---c-cCCeeeeccccccc--ccccccccccccC
Confidence 34555666555544321 1 13555555554331 1334666655553
No 227
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.92 E-value=62 Score=26.68 Aligned_cols=39 Identities=26% Similarity=0.559 Sum_probs=24.7
Q ss_pred ccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 104 LECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
..|+.|-+.+..++.+.. -+..||..| .+|-.|+..|..
T Consensus 8 ~~C~~C~~~I~~~~~v~a---~g~~wH~~C--------F~C~~C~~~L~~ 46 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQC---EGSSFHKSC--------FLCMVCKKNLDS 46 (192)
T ss_dssp EECTTTCCEECSSCCEEE---TTEEECTTT--------CBCTTTCCBCCS
T ss_pred CcCccCCCeecceeEEEe---CCceecCCC--------CcCcccCCcCCC
Confidence 467777777765555432 467777666 457777666643
No 228
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.64 E-value=18 Score=25.50 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=15.8
Q ss_pred hHHHHhcCCCCCCcCcCCCC
Q 047079 134 IDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 134 I~~Wl~~~~tCP~CR~~~~~ 153 (296)
++.||..--.||+|+.+|..
T Consensus 3 md~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE
T ss_pred CCHHHHHHhCCCCCCCcCeE
Confidence 45677777889999998764
No 229
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.50 E-value=37 Score=26.15 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=17.6
Q ss_pred eeEEecccCceechhhhHHHHhcCC-CCCCcCcC
Q 047079 118 ILRLLTVCYHVFHQECIDLWLESHK-TCPVCRSD 150 (296)
Q Consensus 118 ~~r~lp~C~H~Fh~~CI~~Wl~~~~-tCP~CR~~ 150 (296)
..++.. |||.|-.+ .... .||.|...
T Consensus 73 ~~~C~~-CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKD-CSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSS-SSCEECSC------CSTTCCCSSSSSC
T ss_pred eEEcCC-CCCEEeCC------CCCCCcCccccCC
Confidence 444544 99998752 3356 79999765
No 230
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.50 E-value=12 Score=25.61 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=19.9
Q ss_pred ccccccccccccCce---eEE-ecccCceechhhhHHHH
Q 047079 104 LECAICLAEFEDDNI---LRL-LTVCYHVFHQECIDLWL 138 (296)
Q Consensus 104 ~~C~ICl~~~~~~~~---~r~-lp~C~H~Fh~~CI~~Wl 138 (296)
..|+-|...++..+- +.. .+.|+|.|+..|...|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 468888877776541 111 01266666666666664
No 231
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.38 E-value=18 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=8.3
Q ss_pred CCCCCCcCcCCC
Q 047079 141 HKTCPVCRSDLD 152 (296)
Q Consensus 141 ~~tCP~CR~~~~ 152 (296)
+.+||+|+..+.
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 346999987653
No 232
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.51 E-value=79 Score=25.76 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=30.6
Q ss_pred CccccccccccccCceeEEecccCceechhhhHHHHhcCCCCCCcCcCCCC
Q 047079 103 GLECAICLAEFEDDNILRLLTVCYHVFHQECIDLWLESHKTCPVCRSDLDL 153 (296)
Q Consensus 103 ~~~C~ICl~~~~~~~~~r~lp~C~H~Fh~~CI~~Wl~~~~tCP~CR~~~~~ 153 (296)
...|+.|-..+.....+.. -+..||..| .+|-.|..+|..
T Consensus 60 ~~~C~~C~~~I~~~~~~~a---~~~~wH~~C--------F~C~~C~~~L~~ 99 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKA---LDRHWHSKC--------LKCSDCHVPLAE 99 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEE---TTEEECSST--------TSCTTTCCCCSS
T ss_pred CCcCccCCCCccCceeEEe---cCCeEcccc--------CccCCCCCccCC
Confidence 4689999999886544442 578999888 569999888864
No 233
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=20.34 E-value=30 Score=22.26 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=17.5
Q ss_pred ccccccccHHHHHH---HhccCcccccee
Q 047079 240 DRHTLRLPENVKLK---ILRGHNWTGSCI 265 (296)
Q Consensus 240 er~tlrLpe~v~~~---~~~~~~~~~s~~ 265 (296)
...|+|||++...+ +.....|++|.+
T Consensus 4 ~~~sirl~~~l~~~l~~lA~~~~rs~s~l 32 (52)
T 2gpe_A 4 TTMGVKLDDATRERIKSAATRIDRTPHWL 32 (52)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCHHHH
T ss_pred ceEEEECCHHHHHHHHHHHHHHCcCHHHH
Confidence 45799999999643 334456666643
No 234
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=20.06 E-value=1.3e+02 Score=18.75 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=19.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 047079 19 ASPPITIILTVTLLVFFFVGFFSVYFC 45 (296)
Q Consensus 19 ~~~~~~Ivl~vli~v~~~l~~~~i~~~ 45 (296)
..|++++=++-+++-.++++++.+|+-
T Consensus 9 ~LPsI~VPlVglvfPai~Mallf~yIe 35 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hCChhhHhHHHHHHHHHHHHHHHHhhc
Confidence 467777777777767777777777763
Done!