BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047080
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DUN|A Chain A, 1.76a X-Ray Crystal Structure Of A Putative Phenazine
Biosynthesis PhzcPHZF PROTEIN FROM CLOSTRIDIUM DIFFICILE
(STRAIN 630)
Length = 263
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 27/162 (16%)
Query: 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
++LCGHATLAAA+ + + VN ++F T SG L ++NG E
Sbjct: 69 IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEV-------------TRNGNLYEMI 115
Query: 61 FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKF 120
F E+ P E+ L + + V + ++ D+ ++L S + V + +P +
Sbjct: 116 FPEI-MPI---------EIELSPQQANLIGCVPSDVYSS-RDLILLLNSEQEVINYKPNY 164
Query: 121 DEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEVIT 162
+++K GII++ S DF SR+FCP+ + +T
Sbjct: 165 AQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELDSEDPVT 203
>pdb|1S7J|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
pdb|1S7J|B Chain B, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
Length = 262
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
++LCGHATLA A LF+ V T+ F + SG L K +E Y
Sbjct: 68 IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTK----------------KEEYY 111
Query: 61 FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKF 120
+ LDFP E IL + + D+F VL ++VA + P F
Sbjct: 112 Y--LDFPYI------LPERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDF 163
Query: 121 DEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
+K G+IV+ DF SR F PK +NE
Sbjct: 164 SALKALDLGVGVIVTASG---DSVDFVSRTFFPKLRINE 199
>pdb|4DU6|A Chain A, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|B Chain B, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|C Chain C, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|D Chain D, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|E Chain E, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
Length = 223
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 75 NFSEVSLILKALGVSSVV---DMKITTTCEDIFVVLPSAKSVA 114
NF +++LI + V +V D+ +T+TCE FV + +VA
Sbjct: 84 NFPKITLIQNKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVA 126
>pdb|1GTP|A Chain A, Gtp Cyclohydrolase I
pdb|1GTP|B Chain B, Gtp Cyclohydrolase I
pdb|1GTP|C Chain C, Gtp Cyclohydrolase I
pdb|1GTP|D Chain D, Gtp Cyclohydrolase I
pdb|1GTP|E Chain E, Gtp Cyclohydrolase I
pdb|1GTP|F Chain F, Gtp Cyclohydrolase I
pdb|1GTP|G Chain G, Gtp Cyclohydrolase I
pdb|1GTP|H Chain H, Gtp Cyclohydrolase I
pdb|1GTP|I Chain I, Gtp Cyclohydrolase I
pdb|1GTP|J Chain J, Gtp Cyclohydrolase I
pdb|1GTP|K Chain K, Gtp Cyclohydrolase I
pdb|1GTP|L Chain L, Gtp Cyclohydrolase I
pdb|1GTP|M Chain M, Gtp Cyclohydrolase I
pdb|1GTP|N Chain N, Gtp Cyclohydrolase I
pdb|1GTP|O Chain O, Gtp Cyclohydrolase I
pdb|1GTP|P Chain P, Gtp Cyclohydrolase I
pdb|1GTP|Q Chain Q, Gtp Cyclohydrolase I
pdb|1GTP|R Chain R, Gtp Cyclohydrolase I
pdb|1GTP|S Chain S, Gtp Cyclohydrolase I
pdb|1GTP|T Chain T, Gtp Cyclohydrolase I
pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|B Chain B, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|C Chain C, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|D Chain D, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|E Chain E, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|F Chain F, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|G Chain G, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|H Chain H, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|I Chain I, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|J Chain J, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|K Chain K, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|L Chain L, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|M Chain M, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|N Chain N, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|O Chain O, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
Length = 221
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 75 NFSEVSLILKALGVSSVV---DMKITTTCEDIFVVLPSAKSVA 114
NF +++LI + V +V D+ +T+TCE FV + +VA
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVA 124
>pdb|1N3T|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 75 NFSEVSLILKALGVSSVV---DMKITTTCEDIFVVLPSAKSVA 114
NF +++LI + V +V D+ +T+TCE FV + +VA
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVA 124
>pdb|1N3S|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 75 NFSEVSLILKALGVSSVV---DMKITTTCEDIFVVLPSAKSVA 114
NF +++LI + V +V D+ +T+TCE FV + +VA
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCEHSFVTIDGKATVA 124
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|B Chain B, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|C Chain C, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|D Chain D, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|E Chain E, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|F Chain F, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|G Chain G, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|H Chain H, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|I Chain I, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|J Chain J, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|K Chain K, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|L Chain L, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|M Chain M, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|N Chain N, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|O Chain O, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1N3R|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 75 NFSEVSLILKALGVSSVV---DMKITTTCEDIFVVLPSAKSVA 114
NF +++LI + V +V D+ +T+TCE FV + +VA
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCESHFVTIDGKATVA 124
>pdb|1YY3|A Chain A, Structure Of S-Adenosylmethionine:trna Ribosyltransferase-
Isomerase (Quea)
pdb|1YY3|B Chain B, Structure Of S-Adenosylmethionine:trna Ribosyltransferase-
Isomerase (Quea)
Length = 346
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 41 PYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSL-ILKALGVS 89
PY+K D + Q Y E+ AAPTA L+F+E L LK GV
Sbjct: 156 PYIKEQLDDKER---YQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQ 202
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 5 GH--ATLAAAHTLFSTDLVNSNTVEFATLSGILTAKK-----VPYVKTMNDSNSQNGEAQ 57
GH ATL A T + T+L+N G T KK Y+ M D N + GEA
Sbjct: 243 GHPAATLKNARTYY-TNLINH------VKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 58 ECYFIELDFPAAPTADLNFS 77
E +F + P LNF+
Sbjct: 296 EKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 5 GH--ATLAAAHTLFSTDLVNSNTVEFATLSGILTAKK-----VPYVKTMNDSNSQNGEAQ 57
GH ATL A T + T+L+N G T KK Y+ M D N + GEA
Sbjct: 243 GHPAATLKNARTYY-TNLINH------VKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 58 ECYFIELDFPAAPTADLNFS 77
E +F + P LNF+
Sbjct: 296 EKHFGLFNPDQRPKYQLNFN 315
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 26.9 bits (58), Expect = 4.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 17/56 (30%)
Query: 101 EDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFG 156
E++ V+LP K V D++PK G +P E+ +FY CPK G
Sbjct: 450 EELPVLLPDLKDVEDIRPK----------------GKSPLEAHPEFYET-TCPKCG 488
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 26.9 bits (58), Expect = 4.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 17/56 (30%)
Query: 101 EDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFG 156
E++ V+LP K V D++PK G +P E+ +FY CPK G
Sbjct: 450 EELPVLLPDLKDVEDIRPK----------------GKSPLEAHPEFYET-TCPKCG 488
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 26.2 bits (56), Expect = 8.7, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 62 IELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCE 101
+ + F TA E S +++ALG + +V +++ CE
Sbjct: 385 VPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,576,127
Number of Sequences: 62578
Number of extensions: 163697
Number of successful extensions: 326
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 18
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)