BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047080
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=BH0283 PE=3 SV=1
Length = 265
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 25/160 (15%)
Query: 1 MELCGHATLAAAHTLFSTDLVNSNT-VEFATLSGILTAKKVPYVKTMNDSNSQNGEAQEC 59
++LCGHATLA+AH L+ D +++ + F T SGILTA S+ GE
Sbjct: 69 VDLCGHATLASAHILWELDHISAEQPITFYTKSGILTA-------------SKRGE---- 111
Query: 60 YFIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPK 119
+IELDFP+ N LI LG+ + + D + + S + + +L P
Sbjct: 112 -WIELDFPSEQPKQENVYPNELI-DGLGIQP---LYVGRNRFDYLIEIDSEQRLKELNPN 166
Query: 120 FDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
F +++ RGIIV+ + + +DF SR F P GVNE
Sbjct: 167 FSLLEQI-DTRGIIVTSKS-TSTEYDFISRCFFPAVGVNE 204
>sp|Q9DCG6|PBLD1_MOUSE Phenazine biosynthesis-like domain-containing protein 1 OS=Mus
musculus GN=Pbld1 PE=2 SV=2
Length = 288
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 34/170 (20%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHATLA+A LF ++T+ F T+SG L A++ +++G I
Sbjct: 78 LCGHATLASAAVLFHKIQNRNSTLTFVTMSGELKARR-----------AEDG-------I 119
Query: 63 ELDFPAAPTADLNFSEVS-LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ---- 117
LDFP PT +F EV LI A+G + V D++ +T + V L + + L+
Sbjct: 120 VLDFPVYPTFPQDFHEVEDLIKAAIGDTLVQDIRYSTDTRKLLVRLSDSYDRSFLESLKV 179
Query: 118 -----PKFDEMKKCPGRRGIIVSGLAPP---ESGFDFYSRFFCPKFGVNE 159
P ++ K RG+I++ P + +DFYSR+F P G+ E
Sbjct: 180 NTEPLPAIEKTGKV---RGLILTVKGEPGGQTAPYDFYSRYFAPWVGIAE 226
>sp|Q9CXN7|PBLD2_MOUSE Phenazine biosynthesis-like domain-containing protein 2 OS=Mus
musculus GN=Pbld2 PE=2 SV=1
Length = 288
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 34/170 (20%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHATLA+A LF ++T+ F T+SG L A++ ++G I
Sbjct: 78 LCGHATLASAAVLFQKRKNTNSTLTFVTMSGELKARR-----------EEDG-------I 119
Query: 63 ELDFPAAPTADLNFSEVS-LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ---- 117
LDFP PT +F EV LI A+G + V D++ + +++ V L + + L+
Sbjct: 120 VLDFPVYPTFPQDFHEVEDLIKAAIGDTLVQDIRYSPDTKNLLVRLSDSYDRSFLESLKV 179
Query: 118 -----PKFDEMKKCPGRRGIIVSGLAPPESG---FDFYSRFFCPKFGVNE 159
P ++ K RG+I++ P +DFYSR F P GV E
Sbjct: 180 NTEPLPAIEKTGKV---RGLILTVKGEPGGQTALYDFYSRCFAPWVGVAE 226
>sp|Q68G31|PBLD_RAT Phenazine biosynthesis-like domain-containing protein OS=Rattus
norvegicus GN=Pbld PE=2 SV=1
Length = 288
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 32/169 (18%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHAT+A+A LF ++T+ F TLSG L A++ +++G I
Sbjct: 78 LCGHATMASAAVLFHKIKNVNSTLTFVTLSGELKARR-----------AEDG-------I 119
Query: 63 ELDFPAAPTADLNFSEVS-LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFD 121
LDFP PT +F EV LI A+G ++V D++ + + V L + + L+
Sbjct: 120 VLDFPLYPTFPQDFHEVKDLIKAAIGDTTVQDIQYSPDTRKLLVRLSDSYDRSFLESLKV 179
Query: 122 EMKKCPG------RRGIIVSGLAPPESG-----FDFYSRFFCPKFGVNE 159
+ PG +G+I++ ESG +DFYSR+F P GV E
Sbjct: 180 NTEPLPGIEKTGKVKGLILT--VKGESGGQTTPYDFYSRYFAPWVGVPE 226
>sp|Q9HY42|Y3578_PSEAE Uncharacterized isomerase PA3578 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3578
PE=3 SV=1
Length = 261
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 27/157 (17%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHATLAAAH LF +EF + SG L + E +
Sbjct: 70 LCGHATLAAAHVLFEVYDEPGERLEFISRSGALRVNR------------------EDERL 111
Query: 63 ELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDE 122
LDFPA +++ S V L +ALG+ V + + + + V+L S ++V +P F
Sbjct: 112 VLDFPAQYPSEVG-STVEL-EQALGLPPV---DVLGSTDKLLVLLESEEAVRACRPDFAA 166
Query: 123 MKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
+ + P RG+IV+ + DF SRFF P GV+E
Sbjct: 167 LARLPW-RGVIVTARGLQK---DFVSRFFAPAMGVDE 199
>sp|Q9I073|Y2770_PSEAE Uncharacterized isomerase PA2770 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA2770
PE=3 SV=1
Length = 259
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 34/162 (20%)
Query: 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
++LCGHATLA A L S + FAT SG L+ V+ DS
Sbjct: 68 VDLCGHATLATAWVLIHKLDDASPVLRFATRSGELS------VRREGDS----------- 110
Query: 61 FIELDFPAA---PTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ 117
+ +DFPA P A + +L+ALG++ +K +D VV+ K++A L
Sbjct: 111 -LAMDFPAKRPEPCATPDG-----LLEALGIAEAEVLKT----DDYLVVVDDEKTIAALA 160
Query: 118 PKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
P F +K P RG+ V+ + FDF SR+F P GVNE
Sbjct: 161 PDFARLKGLPC-RGVAVTARS---QRFDFVSRWFGPNVGVNE 198
>sp|Q9A3I3|YX21_CAUCR Uncharacterized isomerase CC_3221 OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=CC_3221 PE=3 SV=1
Length = 275
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHATLAAAH LF V+ + F TLSG+LT ++ ++ Q +
Sbjct: 71 LCGHATLAAAHVLFEELGVDVAMLSFETLSGVLTVRR---------ADDQ---------L 112
Query: 63 ELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDE 122
E+DFPA P E + +ALGV + + V+ +V L+P
Sbjct: 113 EMDFPADPPRRTEIPEG--LAEALGVRP----REVWAGAYLVAVVDDETTVRQLRPDLGA 166
Query: 123 MK----KCPGRRGIIVSGLAPPESGFDF--YSRFFCPKFGVNE 159
+K + G G V +A ++G D+ SRFF P FG+ E
Sbjct: 167 LKVIGGEATGGAGQTVV-VAQADAGADYAVVSRFFAPGFGIPE 208
>sp|P30039|PBLD_HUMAN Phenazine biosynthesis-like domain-containing protein OS=Homo
sapiens GN=PBLD PE=1 SV=2
Length = 288
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHATLA+A LF ++T+ F TLSG L A++ +++G I
Sbjct: 78 LCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARR-----------AEDG-------I 119
Query: 63 ELDFPAAPTADLNFSEVS-LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ---- 117
LD P P +F EV LI A+G + V D+ + + + V L + + L+
Sbjct: 120 VLDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKV 179
Query: 118 --PKFDEMKKCPGRRGIIVSGLAPP---ESGFDFYSRFFCPKFGVNE 159
+++ +G+I++ P FDFYSR+F P GV E
Sbjct: 180 NTENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAE 226
>sp|Q2HJF4|PBLD_BOVIN Phenazine biosynthesis-like domain-containing protein OS=Bos taurus
GN=PBLD PE=2 SV=1
Length = 288
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHATLA+A LF +T+ F T+SG L A+K ++G I
Sbjct: 78 LCGHATLASAAVLFHKIKNVHSTLTFVTMSGELKARK-----------EEDG-------I 119
Query: 63 ELDFPAAPTADLNFSEVS-LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ---- 117
LD P P EV LI A+G + V D++ + + + V L + + L+
Sbjct: 120 VLDLPLYPAHPQKLHEVEDLIKTAIGDTLVQDVRYSPDTKKLLVRLSDTYNRSFLESLTV 179
Query: 118 --PKFDEMKKCPGRRGIIVSGLAPP---ESGFDFYSRFFCPKFGVNE 159
+++ +G+I++ P FDFYSR+F P +GV E
Sbjct: 180 NTENLLQVETTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWYGVAE 226
>sp|Q5RDZ1|PBLD_PONAB Phenazine biosynthesis-like domain-containing protein OS=Pongo
abelii GN=PBLD PE=2 SV=1
Length = 288
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFI 62
LCGHATLA+A LF ++ + F TLSG L A++ +++G I
Sbjct: 78 LCGHATLASAAVLFHKIKNMTSMLTFVTLSGELRARR-----------AEDG-------I 119
Query: 63 ELDFPAAPTADLNFSEVS-LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ---- 117
LDFP P +F EV LI A+G + V D+ + + + L + L+
Sbjct: 120 ILDFPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTRKLLIRLSDVYDRSFLENLKV 179
Query: 118 --PKFDEMKKCPGRRGIIVSGLAPP---ESGFDFYSRFFCPKFGVNE 159
+++ +G+I++ P FDFYSR+F P V E
Sbjct: 180 NTENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVAVAE 226
>sp|Q9KMG3|Y3195_VIBCH Uncharacterized isomerase VC_A0395 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=VC_A0395
PE=3 SV=1
Length = 279
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 99 TCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVN 158
+ D+ +VLPS ++V + QP D +++ +IV+ A SG+ R+F PK G++
Sbjct: 163 STRDLVLVLPSVEAVMNFQPDDDRLREINEYHALIVTA-ANGNSGYVL--RYFAPKIGIS 219
Query: 159 E 159
E
Sbjct: 220 E 220
>sp|P58293|Y3446_CLOAB Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=CA_C3446 PE=3 SV=1
Length = 302
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 14/162 (8%)
Query: 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSN--SQNGEAQECY 60
+CGHAT+AA + + + ++ V T +GIL V +K +D G+ +
Sbjct: 75 ICGHATIAAHYARAIENNLETSRVYHKTGAGILP---VDVIKENDDYKIIMTQGKIEFGS 131
Query: 61 FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKF 120
I+ + LN E S +L+ + V +T + + + S K++ LQP +
Sbjct: 132 VIDGEKKEKLLRALNI-EKSDLLENYKIQIV-----STGHSKVMIGIKSLKTLNKLQPNY 185
Query: 121 D---EMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
D ++ K G V + +S + R F P G+NE
Sbjct: 186 DVLSKLSKIIKCNGYYVFAVTSEDSDILIHGRMFAPAIGINE 227
>sp|Q9RUQ2|Y1330_DEIRA Uncharacterized isomerase DR_1330 OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1330
PE=3 SV=1
Length = 308
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 18/165 (10%)
Query: 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY 60
++ CGHAT+A L +E TL+G ++P ++ EC
Sbjct: 82 VDFCGHATVALGRVLAQAGRWRGEALELETLAG-----RIPLRLVLDAGGG------ECR 130
Query: 61 FIELDFPAAPTADLNFSEVSLILKALGVSSVVDMK------ITTTCEDIFVVLPSAKSVA 114
+ + PA T + + +ALG+S + + +T +F+ L A +
Sbjct: 131 -VWMHQPAFGTRAVGRGWHRELAEALGLSDRLLHRGLPLAAASTGLWSVFLPLLDASLLE 189
Query: 115 DLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNE 159
L+P + + G++ P F +R F P G+ E
Sbjct: 190 GLEPDLPRIAELSRELGVVSVYAYAPVGVNRFAARDFAPLVGIPE 234
>sp|A6Q160|DAPF_NITSB Diaminopimelate epimerase OS=Nitratiruptor sp. (strain SB155-2)
GN=dapF PE=1 SV=1
Length = 250
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 2 ELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTA 37
E+CG+ + AAAH +S L S + F TL+G++ A
Sbjct: 67 EMCGNGSRAAAHYAYSYGLA-SKQMRFLTLAGVIEA 101
>sp|B8CX90|DAPF_HALOH Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 /
OCM 544 / DSM 9562) GN=dapF PE=1 SV=1
Length = 284
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 2 ELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPY 42
E+CG+ AH L +L + ++ TL+GI+T + V Y
Sbjct: 73 EMCGNGIRCFAHYLRENNLTTRDVLKIETLAGIITPEIVSY 113
>sp|Q8NIL3|AES1_SCHPO Antisense-enhancing sequence 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aes1 PE=3 SV=1
Length = 296
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 53 NGEAQECYFIELDFPAAPTADLNFSEVSLILKALGV----SSVVD--MKITTTCEDIFVV 106
+GE E +I P + + +S + ALG+ SS V + I + + +
Sbjct: 113 DGEKDEDTWISFKLPYYKILQTSETAISEVENALGIPLNYSSQVSPPVLIDDGPKWLVIQ 172
Query: 107 LPSAKSVADLQPKFDEMKK-CPGRRGIIVSGLAPPESGFD-FYSRFFCPKFGVNE 159
LP+A V +L PKF + + C I V+ E G D F SR F P VNE
Sbjct: 173 LPNATDVLNLVPKFQSLSQVCKNNDWIGVTVFG--ELGKDSFESRSFAPLIHVNE 225
>sp|Q55850|QUEA_SYNY3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=queA
PE=3 SV=1
Length = 366
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 39 KVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSE 78
++P+ + D + N + Q Y +L AAPTA L+F+E
Sbjct: 157 EIPFPPYIGDRQATNDQYQTIYAEKLGAVAAPTAGLHFTE 196
>sp|A1S2C7|GCH1_SHEAM GTP cyclohydrolase 1 OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=folE PE=3 SV=1
Length = 216
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 75 NFSEVSLILKALGVSSVV---DMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRG 131
NF ++++I +GV +V D+ +T+TCE V + +VA L R+
Sbjct: 80 NFPKITVIDNKMGVDEMVRVQDISLTSTCEHHLVTIDGTATVAYL-----------PRKK 128
Query: 132 IIVSGLAPPESGFDFYSRFFCPKFGVNEVITRW 164
II GL S + RFF + V E +T+
Sbjct: 129 II--GL----SKINRIVRFFAQRPQVQERLTQQ 155
>sp|O31570|YFHB_BACSU Uncharacterized isomerase YfhB OS=Bacillus subtilis (strain 168)
GN=yfhB PE=3 SV=1
Length = 293
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 MELCGHATLAAAHTLFSTDLVNSN-TVEFATLSGILTAK 38
M LCGHAT+A+ + L ++ S T T +GIL K
Sbjct: 70 MNLCGHATVASLYALCEKGMLESGKTYSIQTKAGILPVK 108
>sp|Q80XH2|IMPG2_MOUSE Interphotoreceptor matrix proteoglycan 2 OS=Mus musculus GN=Impg2
PE=1 SV=1
Length = 1243
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 TLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGE 55
+L + LFS DL N N++E+ L VPY+++ N S QN E
Sbjct: 907 SLRVTNMLFSEDLFNKNSLEYKALEQRFLELLVPYLQS-NLSGFQNLE 953
>sp|P70628|IMPG2_RAT Interphotoreceptor matrix proteoglycan 2 OS=Rattus norvegicus
GN=Impg2 PE=2 SV=2
Length = 1241
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 TLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGE 55
+L + LFS DL N N++E+ L VPY+++ N S QN E
Sbjct: 907 SLRVTNMLFSEDLFNKNSLEYKALEQRFLELLVPYLQS-NLSGFQNLE 953
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,853,448
Number of Sequences: 539616
Number of extensions: 2192046
Number of successful extensions: 5305
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5272
Number of HSP's gapped (non-prelim): 29
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)