Query 047080
Match_columns 165
No_of_seqs 121 out of 1029
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10281 hypothetical protein; 100.0 4.9E-33 1.1E-37 229.2 14.5 149 1-164 71-230 (299)
2 COG0384 Predicted epimerase, P 100.0 8.2E-33 1.8E-37 226.2 14.8 147 1-164 71-226 (291)
3 KOG3033 Predicted PhzC/PhzF-ty 100.0 1.7E-30 3.6E-35 205.6 13.3 147 1-164 75-227 (286)
4 PF02567 PhzC-PhzF: Phenazine 100.0 2.6E-30 5.6E-35 210.3 4.0 149 1-164 64-217 (281)
5 TIGR00654 PhzF_family phenazin 100.0 2.7E-27 5.9E-32 194.3 15.2 149 1-164 71-231 (297)
6 PRK00450 dapF diaminopimelate 99.9 3.9E-23 8.4E-28 168.0 11.4 144 1-164 70-217 (274)
7 TIGR00652 DapF diaminopimelate 99.7 1E-16 2.2E-21 130.3 10.4 141 1-164 69-215 (268)
8 PRK13577 diaminopimelate epime 99.5 2.8E-13 6.1E-18 110.9 10.8 144 1-164 69-219 (281)
9 PLN02536 diaminopimelate epime 98.7 1.5E-07 3.3E-12 76.7 11.5 140 1-164 55-211 (267)
10 PRK13971 hydroxyproline-2-epim 98.6 1.4E-07 3.1E-12 79.0 7.2 41 1-41 87-130 (333)
11 PRK13970 hydroxyproline-2-epim 98.0 1.5E-06 3.2E-11 72.2 0.7 40 1-40 86-125 (311)
12 COG0253 DapF Diaminopimelate e 98.0 0.00024 5.2E-09 58.1 12.6 141 2-164 71-216 (272)
13 PRK13969 proline racemase; Pro 97.8 3.6E-05 7.7E-10 64.7 6.1 41 1-41 88-132 (334)
14 PF05544 Pro_racemase: Proline 97.8 6.6E-05 1.4E-09 62.9 6.4 89 1-109 80-174 (325)
15 COG3938 Proline racemase [Amin 97.4 0.00046 1E-08 56.8 6.3 41 1-41 88-132 (341)
16 PF01678 DAP_epimerase: Diamin 91.1 1.1 2.3E-05 31.8 6.4 40 2-41 67-106 (121)
17 COG0253 DapF Diaminopimelate e 82.8 4.2 9.1E-05 33.5 6.0 37 4-41 215-251 (272)
18 PRK13577 diaminopimelate epime 75.5 6.2 0.00013 32.2 4.9 37 3-40 217-253 (281)
19 PLN02536 diaminopimelate epime 60.5 18 0.00039 29.4 4.7 36 4-40 210-245 (267)
20 TIGR00654 PhzF_family phenazin 59.9 9.9 0.00021 31.0 3.1 57 98-164 17-75 (297)
21 TIGR00652 DapF diaminopimelate 51.1 34 0.00073 27.6 4.8 37 3-40 211-247 (268)
22 COG0384 Predicted epimerase, P 48.1 27 0.00059 29.0 3.8 56 98-164 18-75 (291)
23 PRK10281 hypothetical protein; 42.3 30 0.00066 28.5 3.3 57 98-164 17-75 (299)
24 PF02567 PhzC-PhzF: Phenazine 39.3 6.2 0.00013 31.8 -1.2 57 98-164 10-68 (281)
25 cd06405 PB1_Mekk2_3 The PB1 do 38.1 1E+02 0.0022 20.5 4.6 34 80-117 27-60 (79)
26 COG3271 Predicted double-glyci 35.6 18 0.00038 28.5 0.9 11 4-14 44-54 (201)
27 PRK00450 dapF diaminopimelate 34.3 87 0.0019 25.1 4.8 38 2-40 214-251 (274)
28 PF14354 Lar_restr_allev: Rest 33.7 13 0.00028 22.8 -0.1 9 2-10 7-15 (61)
29 PF01170 UPF0020: Putative RNA 29.7 40 0.00087 25.5 2.0 19 2-20 35-53 (179)
30 PRK04322 peptidyl-tRNA hydrola 26.5 38 0.00082 24.0 1.3 14 3-16 19-32 (113)
31 TIGR00283 arch_pth2 peptidyl-t 24.8 41 0.00089 23.9 1.2 15 3-17 21-35 (115)
32 PRK14980 DNA-directed RNA poly 24.6 14 0.00031 26.7 -1.2 9 2-10 70-78 (127)
33 KOG3282 Uncharacterized conser 23.1 51 0.0011 25.6 1.5 17 3-19 96-112 (190)
34 cd02407 PTH2_family Peptidyl-t 22.9 47 0.001 23.6 1.2 15 3-17 21-35 (115)
35 PF01981 PTH2: Peptidyl-tRNA h 22.0 45 0.00098 23.4 0.9 14 3-16 22-35 (116)
36 cd02430 PTH2 Peptidyl-tRNA hyd 21.2 57 0.0012 23.2 1.3 15 3-17 21-35 (115)
37 PF10571 UPF0547: Uncharacteri 20.7 42 0.0009 17.4 0.4 6 2-7 18-23 (26)
No 1
>PRK10281 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=229.25 Aligned_cols=149 Identities=22% Similarity=0.289 Sum_probs=120.6
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCC-CCccH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADL-NFSEV 79 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~-~~~~~ 79 (165)
|||||||||||+|+|++.+....++++|+|++|.|+|+++. .+ +.++++|.+|.+.+... ...+.
T Consensus 71 v~fcGHaTlaa~~~L~~~~~~~~~~~~~~t~~G~v~v~~~~----------~~----~~~~~~~~~~~p~~~~~~~~~~~ 136 (299)
T PRK10281 71 VPICGHATVAAHYVRATVLGLGNCTVWQTTLAGILPVDIEK----------EN----DDYRISMTQGTPEFEPPLEGETR 136 (299)
T ss_pred cccCCcHHHHHHHHHHHhCCCCCCcEEEEcCceEEEEEEEe----------cC----CeEEEEEecCCCcccCCCCccCH
Confidence 79999999999999998876666789999999999999963 12 24457788876644332 22235
Q ss_pred HHHHHHhCCCceeeE-------EEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC---cceEEEecCCCCCCccEEee
Q 047080 80 SLILKALGVSSVVDM-------KITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR---RGIIVSGLAPPESGFDFYSR 149 (165)
Q Consensus 80 ~~l~~algl~~~~~i-------~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~---~gv~v~~~~~~~~~~~~~~R 149 (165)
++++++||++. .++ .+++|.++++|+|+|.++|.+++||+++|.+++++ .|+++|+..+.+.+.+|++|
T Consensus 137 ~~l~~~lgl~~-~~i~~~~p~~~~~~G~~~liv~l~~~~~l~~~~pd~~~l~~l~~~~~~~g~~v~~~~~~~~~~~~~~R 215 (299)
T PRK10281 137 AAIINALGLTE-DDILPGLPIQVASTGHSKVMIPLKPEVDLDALSPNLAALTAISKQIGCNGFFPFQIRPGKNEILTDGR 215 (299)
T ss_pred HHHHHHhCCCh-HHcCcCCCcEEEecCCceEEEEeCCHHHHHhCCCCHHHHHHHHHhcCCcEEEEEEecCCCCCceEEEe
Confidence 78999999876 343 26899999999999999999999999999999864 37888888654345679999
Q ss_pred ecCCCCCCCCcccCC
Q 047080 150 FFCPKFGVNEVITRW 164 (165)
Q Consensus 150 ~FaP~~Gi~EDpaTg 164 (165)
||+|++||+||||||
T Consensus 216 ~FaP~~Gi~EDPaTG 230 (299)
T PRK10281 216 MFAPAIGIVEDPVTG 230 (299)
T ss_pred eCCCCCCCccCcccc
Confidence 999999999999999
No 2
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=100.00 E-value=8.2e-33 Score=226.17 Aligned_cols=147 Identities=27% Similarity=0.392 Sum_probs=123.8
Q ss_pred CCCCChHHHHHHHHHHhcCCCCC-CeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNS-NTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEV 79 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~-~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~ 79 (165)
|||||||||||+|+|++.+.... .+++|||++|+|+++++. .+ +. ++|.+|..+.......+.
T Consensus 71 vpf~GHaTlga~~~l~~~~~~~~~~~~~~e~~aG~v~i~~~~----------~~----~~--~~~~~p~~~~~~~~~~~~ 134 (291)
T COG0384 71 VPFAGHATLGAAHVLAELGGLSNDTTLTLETKAGLVPVTVER----------GG----GQ--AEFDLPQLPPPEEIEAEP 134 (291)
T ss_pred cccCCCHHHHHHHHHHHhcCCCccceEEEEeccCeEEEEEEe----------CC----Cc--eEEccCCCCCccccccCH
Confidence 79999999999999998887654 589999999999999974 22 23 889999876544333357
Q ss_pred HHHHHHhCCCceeeE-------EEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC-cceEEEecCCCCCCccEEeeec
Q 047080 80 SLILKALGVSSVVDM-------KITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR-RGIIVSGLAPPESGFDFYSRFF 151 (165)
Q Consensus 80 ~~l~~algl~~~~~i-------~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~-~gv~v~~~~~~~~~~~~~~R~F 151 (165)
++++++|||++ .++ .++||.++++|+|+|.++|++++||++++.+++.+ .++++++..+.+.+.+|++|||
T Consensus 135 ~~la~aLgL~~-~~~~~~~~~~~~stG~~~l~v~l~s~~av~~~~pd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~R~F 213 (291)
T COG0384 135 AELAEALGLEE-DDLLPEHPPQVVSTGLPDLLVPLESLEALDALRPDFSALTELSAGGGGVYVFAREGAGAEADFHARMF 213 (291)
T ss_pred HHHHHHcCCCh-HHcccccCceEeecCCceEEEEeCCHHHHHhcCCCHHHHHhhcccccceEEEEeccCCCCCcEEEEec
Confidence 89999999987 333 36999999999999999999999999999999733 2488999887777889999999
Q ss_pred CCCCCCCCcccCC
Q 047080 152 CPKFGVNEVITRW 164 (165)
Q Consensus 152 aP~~Gi~EDpaTg 164 (165)
+|.+||.||||||
T Consensus 214 aP~~Gi~EDPaTG 226 (291)
T COG0384 214 APGIGVVEDPATG 226 (291)
T ss_pred ccccCCCCCCCcc
Confidence 9999999999999
No 3
>KOG3033 consensus Predicted PhzC/PhzF-type epimerase [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=205.58 Aligned_cols=147 Identities=37% Similarity=0.494 Sum_probs=120.1
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCC--CCcc
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADL--NFSE 78 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~--~~~~ 78 (165)
||||||||||++|+|++..++...++.|+|++|+|+++++. .| . |+|++|.++..++ ..+.
T Consensus 75 vplcGHaTLasahvlf~~~~n~n~~l~f~t~sG~l~akrd~-----------~~----~--ieln~P~y~~~si~~~~~~ 137 (286)
T KOG3033|consen 75 VPLCGHATLASAHVLFNEIGNVNKELKFDTLSGILTAKRDE-----------LG----S--IELNFPEYDTTSINISNEL 137 (286)
T ss_pred CcccCcchhhHHHHHHHhccCCcceEEEEeecceEEEEecc-----------cc----c--eEEccCccccccccccchH
Confidence 79999999999999999988888999999999999999973 22 2 8999999988774 3234
Q ss_pred HHHHHHHhCCCceeeEEE--eCCCceEEEEcCChhhhcccCCChHHHhcC--CCCcceEEEecCCCCCCccEEeeecCCC
Q 047080 79 VSLILKALGVSSVVDMKI--TTTCEDIFVVLPSAKSVADLQPKFDEMKKC--PGRRGIIVSGLAPPESGFDFYSRFFCPK 154 (165)
Q Consensus 79 ~~~l~~algl~~~~~i~~--~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~--~~~~gv~v~~~~~~~~~~~~~~R~FaP~ 154 (165)
...+.+++|..-+.++.. ..+.++++|.|++.+++-.++|+...+..+ +..+++++...+..+..+||.+|+||||
T Consensus 138 ~~~fska~~~~~i~dv~~~~~~~p~~liVvl~~~~t~~elep~~~d~~di~~~p~~~~~v~~~g~~g~~~dy~~RyFAP~ 217 (286)
T KOG3033|consen 138 EGIFSKAEGPAFIFDVIKCVTPTPRKLIVVLDPWETVFELEPNRIDISDISTCPNNGMIVTFAGSSGSPYDYESRYFAPW 217 (286)
T ss_pred HHHHHHhhCCceeccchhccCCCCceEEEEeCCcceeeecChhhhhhhhhhcCCCCceEEEEecCCCCCCceEeeecccc
Confidence 456778888776555532 334689999999999999999987776532 3335788877776677899999999999
Q ss_pred CCCCCcccCC
Q 047080 155 FGVNEVITRW 164 (165)
Q Consensus 155 ~Gi~EDpaTg 164 (165)
+||+||||||
T Consensus 218 ~GVnEDPvtG 227 (286)
T KOG3033|consen 218 VGVNEDPVTG 227 (286)
T ss_pred ccccCCCCCC
Confidence 9999999999
No 4
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 1U0K_A 1QYA_B 1QY9_D 1SDJ_A 1U1X_A 1U1W_B 1T6K_A 1XUA_A 1XUB_A 1U1V_A ....
Probab=99.96 E-value=2.6e-30 Score=210.25 Aligned_cols=149 Identities=30% Similarity=0.457 Sum_probs=108.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS 80 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~ 80 (165)
||||||||||++|+|++.+....+++.|+|++|.|+|+.... ... ...++++|.+|.....+. +..
T Consensus 64 v~fcGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~l~v~~~~~---------~~~--~~~~~~~~~~P~~~~~~~---~~~ 129 (281)
T PF02567_consen 64 VPFCGHATLAAAHALFERGGLDPGEIVFETKAGILPVEVIVE---------GDG--GDEVFIEQEQPEFEPVPI---DRE 129 (281)
T ss_dssp ESSSHHHHHHHHHHHHHHTTTSSSEEEEEETTEEEEEEEEEE---------ECE--EEEEEEEEEEEEEEEEEC---HHH
T ss_pred CCCCCcHHHHHHHHHHHhccccCceEEEEcCeEEEEEEEeec---------ccc--ccccceeccCCCCccccc---hhh
Confidence 699999999999999999887788999999999999962210 011 135568888877654333 233
Q ss_pred HHHHHhCC---C--ceeeEEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCCC
Q 047080 81 LILKALGV---S--SVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKF 155 (165)
Q Consensus 81 ~l~~algl---~--~~~~i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~~ 155 (165)
.++.++++ . .+.++ +++|.+|++|+|++.++|.+++||++.+.+.+..++++.+......++.+|++|||+|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~-~~tg~~~llv~l~~~~~l~~l~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~FaP~~ 208 (281)
T PF02567_consen 130 ELAAALGLLGEDGVLPPQV-VSTGNPWLLVPLKSAEALAALKPDFAALLALCDRNGVHVFTFFTDDEDSDFHSRMFAPGI 208 (281)
T ss_dssp HHHHHHHCHTSGTSS-SEE-EESSSEEEEEEBSCHHHHHH---SHHHHHHHHTTCEEEEEEEEEESSTTEEEEEEEEGGG
T ss_pred hhHHHHhhhcccccCceEE-EECCCCcEEEEEecccccccceechhhhcccccccccccccccccCCCceEEEeeeeccc
Confidence 44444433 2 11333 789999999999999999999999977766666657766555444567899999999999
Q ss_pred CCCCcccCC
Q 047080 156 GVNEVITRW 164 (165)
Q Consensus 156 Gi~EDpaTg 164 (165)
||+||||||
T Consensus 209 Gi~EDpaTG 217 (281)
T PF02567_consen 209 GIPEDPATG 217 (281)
T ss_dssp TEEEESS-H
T ss_pred CCCCCCCch
Confidence 999999998
No 5
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear.
Probab=99.95 E-value=2.7e-27 Score=194.32 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=117.8
Q ss_pred CCCCChHHHHHHHHHHhcCCCC-CCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccH
Q 047080 1 MELCGHATLAAAHTLFSTDLVN-SNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEV 79 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~-~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~ 79 (165)
++||||||+|++++|.+.+... .+.++|+|++|++++++.. .++ ...++|++|.+.+.+...+..
T Consensus 71 ~~~CGh~tl~aa~~l~~~~~~~~~~~~~~et~aG~v~v~~~~----------~~~----~~~i~v~~~~p~~~~~~~~~~ 136 (297)
T TIGR00654 71 LPFAGHPTIGSCYALLEFTKLTTATTLVQECKAGAVPVTINE----------KNG----DLRISLEQPMPDFEPISGEMR 136 (297)
T ss_pred cCcCCchHHHHHHHHHHcCCCCCCccEEEEcCceEEEEEEEe----------cCC----cEEEEEECCCCcccCCCchhH
Confidence 6899999999999999876543 4679999999999999963 122 234677787776665433234
Q ss_pred HHHHHHhCCCceee-------EEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC---cceEEEecCCC-CCCccEEe
Q 047080 80 SLILKALGVSSVVD-------MKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR---RGIIVSGLAPP-ESGFDFYS 148 (165)
Q Consensus 80 ~~l~~algl~~~~~-------i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~---~gv~v~~~~~~-~~~~~~~~ 148 (165)
.+++++||++. .+ ..+++|+++++|++++.++|.+++||++++++++++ .++++|+.... ....++++
T Consensus 137 ~~~~~~lg~~~-~~~~~~~~~~~v~~G~ph~vv~v~~~~~l~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (297)
T TIGR00654 137 ADLAKALGLTE-DDFIKGLPIQLLSTGPEWIVIPLKDEEACFNASPNFAMLAHQLKQNDHVGVIPFGPKKEAAGKNDYHG 215 (297)
T ss_pred HHHHHHhCCCh-HHhcccCCcEEEecCCCeEEEEeCCHHHHHhCCCCHHHHHHHHhhcCccEEEEEecCCCCCCCceEEE
Confidence 56778899874 21 237899999999999999999999999999988653 47889988652 23467999
Q ss_pred eecCCCCCCCCcccCC
Q 047080 149 RFFCPKFGVNEVITRW 164 (165)
Q Consensus 149 R~FaP~~Gi~EDpaTg 164 (165)
|+|+|..|+.||||||
T Consensus 216 R~f~p~~g~~EDpatG 231 (297)
T TIGR00654 216 RMFAPVIGIYEDPVTG 231 (297)
T ss_pred EeCCCCCCCcCCCccc
Confidence 9999999999999999
No 6
>PRK00450 dapF diaminopimelate epimerase; Provisional
Probab=99.89 E-value=3.9e-23 Score=167.96 Aligned_cols=144 Identities=18% Similarity=0.283 Sum_probs=99.6
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS 80 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~ 80 (165)
+|||||||+|++++|++.+....+++.|+|++|.++|++.. + +.+++.|..|.....+.+..+.+
T Consensus 70 v~~CGHat~~~a~~L~~~g~~~~~~~~~~t~~G~l~v~~~~-----------~----~~i~~~~~~P~~~~~~~~~~~~~ 134 (274)
T PRK00450 70 AEMCGNGARCFARFLYEKGLTNKTEIRVETLAGIIEAEVED-----------D----GLVTVDMGEPRFEPAEIPLAEED 134 (274)
T ss_pred HHcCcchHHHHHHHHHHcCCCCCCeEEEEeCCceEEEEEec-----------C----CEEEEECCCCccCcccCcccccc
Confidence 58999999999999999877666789999999999999962 1 23344554455433332211112
Q ss_pred HHHHHhCCCce--eeEEEeCCCceEEEEcCC--hhhhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCCCC
Q 047080 81 LILKALGVSSV--VDMKITTTCEDIFVVLPS--AKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFG 156 (165)
Q Consensus 81 ~l~~algl~~~--~~i~~~tg~~~lvv~l~~--~~~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~~G 156 (165)
.++.++++... .-..+++|.+|++|+++| .++|.+++||++++..+.+..++...... ...++++|+|+| |
T Consensus 135 ~l~~~l~~~~~~~~~~~v~~G~~~lvv~v~~~~~~~l~~l~pd~~~~~~~~~~~nv~~~~~~---~~~~~~~R~F~~--g 209 (274)
T PRK00450 135 VIEKEYILGGQTVEVTAVSMGNPHAVIFVDDVDAADVEELGPLLENHPRFPEGVNVNFVQVV---DRDHIRLRVYER--G 209 (274)
T ss_pred ccceeeeeCCcEEEEEEEECCCCcEEEEeCCCCcCchhHhchhcccCCCCCCCeEEEEEEEc---cCCEEEEEEecC--C
Confidence 34445554210 112378999999999999 89999999999987766544333322221 245799999988 6
Q ss_pred CCCcccCC
Q 047080 157 VNEVITRW 164 (165)
Q Consensus 157 i~EDpaTg 164 (165)
+.|||+||
T Consensus 210 v~Ed~a~G 217 (274)
T PRK00450 210 VGETLACG 217 (274)
T ss_pred CCcccccc
Confidence 79999998
No 7
>TIGR00652 DapF diaminopimelate epimerase.
Probab=99.70 E-value=1e-16 Score=130.28 Aligned_cols=141 Identities=15% Similarity=0.232 Sum_probs=91.9
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS 80 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~ 80 (165)
+|||||||++++++|.+.+....++++++|++|.+++++.. + +. ++++++.+.+.....+ .
T Consensus 69 ~~~CGh~t~~~a~~l~~~~~~~~~~~~~et~~G~v~v~~~~-----------~----~~--i~v~m~~p~~~~~~~~-~- 129 (268)
T TIGR00652 69 AEMCGNGIRCFAKFVYEHGLVNKKDISVETLAGLIVLEVKS-----------E----NK--VKVDMGEPNFKPAEIP-L- 129 (268)
T ss_pred HHhCcCcHHHHHHHHHHcCCCCCCeEEEEeCCCcEEEEEec-----------C----CE--EEEECCCCccccccCc-c-
Confidence 48999999999999998876555689999999999999853 1 24 4555544333222111 1
Q ss_pred HHHHHhCCCce---ee-EEEeCCCceEEEEcCChhhhc--ccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCC
Q 047080 81 LILKALGVSSV---VD-MKITTTCEDIFVVLPSAKSVA--DLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPK 154 (165)
Q Consensus 81 ~l~~algl~~~---~~-i~~~tg~~~lvv~l~~~~~L~--~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~ 154 (165)
.++++++..+ .. ..+++|++++++++++.+++. .+.++.+...... .++.|++.... ...++++|+|.|.
T Consensus 130 -~~~~~~l~~~~~~~~~~~vstG~ph~vv~v~~~~~l~~~~~~~~~~~~~~fp--~~~nV~~~~~~-~~~~i~~R~ferg 205 (268)
T TIGR00652 130 -TVWKFEEPEVGLFGEILAVDTGNPHLVVFVDDVEGLNLLILGPLLEYHERFP--EGVNVNFVQVK-NDDTIKLRTYERG 205 (268)
T ss_pred -ccccccccccccEeeEEEEecCCCcEEEEeCCcCcccHHHhccccccCCCCC--CCeEEEEEEEC-cCCEEEEEEecCC
Confidence 1234555321 01 137999999999999877654 2224433222221 26777665432 3578999999999
Q ss_pred CCCCCcccCC
Q 047080 155 FGVNEVITRW 164 (165)
Q Consensus 155 ~Gi~EDpaTg 164 (165)
.|..|++.||
T Consensus 206 ~get~acGTG 215 (268)
T TIGR00652 206 AGETLACGTG 215 (268)
T ss_pred CCcccccHHH
Confidence 8777777776
No 8
>PRK13577 diaminopimelate epimerase; Provisional
Probab=99.48 E-value=2.8e-13 Score=110.85 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=92.1
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCc--c
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFS--E 78 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~--~ 78 (165)
.+||||||.+.++.|.+.+....++++++|.+|.+++++.. ++ ..+.+.|..|......++.. .
T Consensus 69 aemCGNg~Rc~a~~l~~~~~~~~~~~~ieT~aG~~~~~v~~-----------~~---~~v~v~mg~p~~~~~~~~~~~~~ 134 (281)
T PRK13577 69 AEKSGNGLRIFSRYLWDQGLVDDEPFTIETKGGIVECQVLD-----------AG---RTIQVEMGKVSFGSTDIPVAGED 134 (281)
T ss_pred HHhccccHHHHHHHHHHcCCCCCCcEEEEECCceEEEEEEC-----------CC---cEEEEECCCceeccccCCccccc
Confidence 37999999888887877766556689999999999999852 11 23344554444332332211 1
Q ss_pred HHHHHHHhCCCce-ee-EEEeCCCceEEEEcCChhhhc--ccCCChHHHhcCCCCcce-EEEecCCCCCCccEEeeecCC
Q 047080 79 VSLILKALGVSSV-VD-MKITTTCEDIFVVLPSAKSVA--DLQPKFDEMKKCPGRRGI-IVSGLAPPESGFDFYSRFFCP 153 (165)
Q Consensus 79 ~~~l~~algl~~~-~~-i~~~tg~~~lvv~l~~~~~L~--~l~pd~~~l~~~~~~~gv-~v~~~~~~~~~~~~~~R~FaP 153 (165)
.+.++..|++... .. ..+++|++|+|+++++.+.+. .+-|+.+....+.+.-.+ +++..+ ...+.+|+|.+
T Consensus 135 ~~~i~~~l~i~~~~~~~~~vs~G~PH~Vv~V~~~~~~~~~~~g~~~~~~~~fp~~~Nv~f~~~~~----~~~i~~R~~Er 210 (281)
T PRK13577 135 REVLNEKLDVDGRRLTYCAATIGNPHCVVLLDEISEELARELGPLIETHPRFPNRTNVQFLKVLD----RNTIQIEIWER 210 (281)
T ss_pred ccccceEeeeCCcEEeEEEEECCCCcEEEEeCCcchhhHHhhCccccccCCCCCCceEEEEEEcc----CCeEEEEEECC
Confidence 1235566776531 11 237899999999999876544 444777655444332122 233332 35899999998
Q ss_pred CCCCCCcccCC
Q 047080 154 KFGVNEVITRW 164 (165)
Q Consensus 154 ~~Gi~EDpaTg 164 (165)
..| ||+|||
T Consensus 211 G~g--~T~AcG 219 (281)
T PRK13577 211 GAG--YTLASG 219 (281)
T ss_pred CCC--CCccCH
Confidence 875 699998
No 9
>PLN02536 diaminopimelate epimerase
Probab=98.74 E-value=1.5e-07 Score=76.72 Aligned_cols=140 Identities=9% Similarity=0.055 Sum_probs=81.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCC-CCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccH
Q 047080 1 MELCGHATLAAAHTLFSTDLVN-SNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEV 79 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~-~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~ 79 (165)
.+||||++.+.++.|.+.+... .+++.|+|++|.+.+++.. + +.+++.|..|......++..
T Consensus 55 a~mCGNg~Rc~a~~l~~~~~~~~~~~~~ieT~aG~i~~~v~~-----------~----~~v~V~mg~p~~~~~~ip~~-- 117 (267)
T PLN02536 55 PEMCGNGIRCFARFIAELENLQGKNSYKIHTGAGLIIPEMQA-----------D----GQVKVDMGEPILKGPEVPTK-- 117 (267)
T ss_pred hhhCccHHHHHHHHHHHcCCCCCCceEEEEeCCccEEEEEeC-----------C----CEEEEeccCcccccccCccc--
Confidence 3699999999999999987653 3589999999999998752 2 24456666555543433310
Q ss_pred HHHHHHhCCC----c------eee-EEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC-----cceEEEecCCCCCC
Q 047080 80 SLILKALGVS----S------VVD-MKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR-----RGIIVSGLAPPESG 143 (165)
Q Consensus 80 ~~l~~algl~----~------~~~-i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~-----~gv~v~~~~~~~~~ 143 (165)
++...+.. + ... ..+++|+|++++.+++...+.. .|...+-..-+. .|+.|-...- .+.
T Consensus 118 --~~~~~~~~~~~~~~~i~~~~~~~~~Vs~GnPH~VifV~~~~~~~~--~~~~~~g~~i~~~~~FP~~~NV~f~~v-~~~ 192 (267)
T PLN02536 118 --LAATKDGAVVQAELDVDGKTWLVTCVSMGNPHCVTFGEKELKVDD--LPLEKIGPKFEHHEMFPARTNTEFVQV-VSR 192 (267)
T ss_pred --ccccccccceeeEEeeCCcEEEEEEEECCCCCEEEEECCccccCc--CChHHhChhccccCCCCCCcEEEEEEE-cCC
Confidence 11111110 0 011 1378999999999987322332 233333222121 2444321110 124
Q ss_pred ccEEeeecCCCCCCCCcccCC
Q 047080 144 FDFYSRFFCPKFGVNEVITRW 164 (165)
Q Consensus 144 ~~~~~R~FaP~~Gi~EDpaTg 164 (165)
..+..|.|== |+.|=-+||
T Consensus 193 ~~i~~rt~ER--Gvg~TlACG 211 (267)
T PLN02536 193 SHLKMRVWER--GAGATLACG 211 (267)
T ss_pred CEEEEEEecc--CCchhhccC
Confidence 6689999843 456777776
No 10
>PRK13971 hydroxyproline-2-epimerase; Provisional
Probab=98.59 E-value=1.4e-07 Score=79.01 Aligned_cols=41 Identities=20% Similarity=0.472 Sum_probs=35.7
Q ss_pred CCCCChHHHHHHHHHHhcCCCC---CCeEEEEeccceEEEEEcc
Q 047080 1 MELCGHATLAAAHTLFSTDLVN---SNTVEFATLSGILTAKKVP 41 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~---~~~i~~et~~G~l~v~~~~ 41 (165)
+|||||+|||++++|.+.+.+. ...+++||++|.++|++..
T Consensus 87 ~~mcGH~TIg~a~~L~e~G~i~~~~~~~~~letpaG~V~V~v~~ 130 (333)
T PRK13971 87 LPMCGHGTIGTVTAAIEEGLVTPKTPGKLRLDTPAGLVDIEYEQ 130 (333)
T ss_pred cCcCccHHHHHHHHHHHcCCCCCCCCCeEEEECCcEEEEEEEEE
Confidence 6899999999999999987543 3579999999999999974
No 11
>PRK13970 hydroxyproline-2-epimerase; Provisional
Probab=98.02 E-value=1.5e-06 Score=72.17 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=36.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEc
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~ 40 (165)
+++|||+|||++.+|.+.+.+..+++++||.+|.++|+++
T Consensus 86 ~~mCGH~TIa~~t~l~e~G~v~~~~~~ieTpaG~v~v~~~ 125 (311)
T PRK13970 86 LGMCGHGTIGVVRTLHHMGRIGPGVHRIETPVGTVEATLH 125 (311)
T ss_pred ccccccchheeeeeeeecceecCCcEEEEcCCceEEEEEE
Confidence 5899999999999999988776677799999999999997
No 12
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00024 Score=58.12 Aligned_cols=141 Identities=18% Similarity=0.310 Sum_probs=87.4
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHHH
Q 047080 2 ELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVSL 81 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~~ 81 (165)
.+||-++=+.|+.|.+.+.....++.++|.+|++.+++.. + ..+.+.|..|......++.. ...
T Consensus 71 e~CGNG~Rc~a~~l~~~~~~~~~~~~v~T~~G~~~~~~~~-----------~----~~v~VdMg~p~~~~~~ip~~-~~~ 134 (272)
T COG0253 71 EMCGNGARCFARFLAERGLVKKKEISVETLAGILKVKVHD-----------D----NTVSVDMGLPSFKPAEIPLL-EEK 134 (272)
T ss_pred hhcccHHHHHHHHHHHhcCCcCccEEEEeccceEEEEEec-----------C----CEEEEEcCCCccccccCCch-hhh
Confidence 4899999999999999987766789999999999999984 2 25667777777665554421 111
Q ss_pred HHHHhCCC-ceee-EEEeCCCceEEEEcCChhh--hcccCCChHHHhcCCCCcceEE-EecCCCCCCccEEeeecCCCCC
Q 047080 82 ILKALGVS-SVVD-MKITTTCEDIFVVLPSAKS--VADLQPKFDEMKKCPGRRGIIV-SGLAPPESGFDFYSRFFCPKFG 156 (165)
Q Consensus 82 l~~algl~-~~~~-i~~~tg~~~lvv~l~~~~~--L~~l~pd~~~l~~~~~~~gv~v-~~~~~~~~~~~~~~R~FaP~~G 156 (165)
+..-.++. .... ..+++|+|++++.+++.+. +..+-|-++.=.+.. .++.+ |.... +...++.|.|= -|
T Consensus 135 ~~~~~~~~~~~~~~~~vs~GnPH~V~~Vddv~~~~~~~~g~~l~~h~~Fp--~~vNV~F~~v~--~~~~i~vrv~E--RG 208 (272)
T COG0253 135 VEEQYGLGEETVTFYAVSMGNPHLVIFVDDVETANLEELGPLLESHELFP--EGVNVGFVQVL--SRDAIRLRVYE--RG 208 (272)
T ss_pred ccccccccccceeEEEEecCCCeEEEEeCCcccchhhhhhhhhhcCccCC--CceEEEEEEeC--CCCcEEEEEee--cC
Confidence 11111111 1011 2479999999999997665 333333222211111 24444 33221 24668888873 35
Q ss_pred CCCcccCC
Q 047080 157 VNEVITRW 164 (165)
Q Consensus 157 i~EDpaTg 164 (165)
..|--|||
T Consensus 209 ~G~T~ACG 216 (272)
T COG0253 209 AGETLACG 216 (272)
T ss_pred Ccccccch
Confidence 67777777
No 13
>PRK13969 proline racemase; Provisional
Probab=97.84 E-value=3.6e-05 Score=64.74 Aligned_cols=41 Identities=22% Similarity=0.539 Sum_probs=35.2
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCC----eEEEEeccceEEEEEcc
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSN----TVEFATLSGILTAKKVP 41 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~----~i~~et~~G~l~v~~~~ 41 (165)
.++|||+|+|.+.+|.+.+..... ++++||.+|.+.++...
T Consensus 88 ~~MCGhgtI~vat~l~e~G~v~~~~~~~~v~ieTPaGlV~a~~~~ 132 (334)
T PRK13969 88 LNMCGHGSIGAATCAVETGIVKVEEPYTHIKLEAPAGMINARVKV 132 (334)
T ss_pred cccccChHHHHHHHHHHcCCcCCCCCceeEEEECCceEEEEEEEE
Confidence 379999999999999999865432 69999999999999863
No 14
>PF05544 Pro_racemase: Proline racemase; InterPro: IPR008794 This family consists of proline racemase (5.1.1.4 from EC) proteins which catalyse the interconversion of L- and D-proline in bacteria []. This family also contains several similar eukaryotic proteins including Q9NCP4 from SWISSPROT a sequence with B-cell mitogenic properties which has been characterised as a co-factor-independent proline racemase [].; GO: 0018112 proline racemase activity; PDB: 1TM0_A 2AZP_A 1W61_B 1W62_A.
Probab=97.76 E-value=6.6e-05 Score=62.90 Aligned_cols=89 Identities=27% Similarity=0.370 Sum_probs=54.8
Q ss_pred CCCCChHHHHHHHHHHhcCCCC----CCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEE-eCCCCCCCC-C
Q 047080 1 MELCGHATLAAAHTLFSTDLVN----SNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIEL-DFPAAPTAD-L 74 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~----~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~P~~~~~~-~ 74 (165)
.++|||+|||.+.+|.+.+... ..+++++|.+|+++++... ++|+ ...+++ +.|++.... .
T Consensus 80 ~~McGh~tI~~~t~lve~G~v~~~~~~t~v~letPaGlV~a~~~~----------~~g~---v~~Vsf~nVPsf~~~~d~ 146 (325)
T PF05544_consen 80 SPMCGHGTIAVATALVETGLVPMKEPETEVRLETPAGLVEATVEV----------EGGK---VESVSFENVPSFVYALDV 146 (325)
T ss_dssp -SSTHHHHHHHHHHHHHTTSS-SECCECEEEEEETTEEEEEEEEE----------TSTS---EEEEEEE-S-BEEEEEEE
T ss_pred CCCcccHHHHHHHHHHHCCcccCCCCCEEEEEECCCcEEEEEEEE----------eCCE---EEEEEEeeEEeeeEecCC
Confidence 3799999999999999998764 2479999999999999985 4442 233555 455543321 1
Q ss_pred CCccHHHHHHHhCCCceeeEEEeCCCceEEEEcCC
Q 047080 75 NFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPS 109 (165)
Q Consensus 75 ~~~~~~~l~~algl~~~~~i~~~tg~~~lvv~l~~ 109 (165)
.. +. .-+| +...|+.+ .|..|.+|..+.
T Consensus 147 ~v-~v----pg~G-~v~vDiay-GG~fyaivda~~ 174 (325)
T PF05544_consen 147 PV-EV----PGLG-TVTVDIAY-GGAFYAIVDAAQ 174 (325)
T ss_dssp EE-EE----TTTC-EEEEEEEE-SSSEEEEEEGGG
T ss_pred EE-EC----CCcc-cEEEEEEe-CCEEEEEEEHHH
Confidence 11 11 1134 11255533 467777887653
No 15
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00046 Score=56.84 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHHhcCCCC---C-CeEEEEeccceEEEEEcc
Q 047080 1 MELCGHATLAAAHTLFSTDLVN---S-NTVEFATLSGILTAKKVP 41 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~---~-~~i~~et~~G~l~v~~~~ 41 (165)
.|+|||.||++..+|.+.+.+. + +.+.+||.+|++.++.+.
T Consensus 88 ~pMsGsntIc~~T~lle~G~v~m~eP~t~l~letP~GlV~~~a~c 132 (341)
T COG3938 88 LPMSGSNTICVVTVLLESGLVPMQEPETVLRLETPAGLVEATAEC 132 (341)
T ss_pred CCcCCCCchhhhhHHHHcCCccCCCCceEEEEecCCcEEEEEEEe
Confidence 4899999999999999998764 3 789999999999999985
No 16
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Two lysine biosynthesis pathways evolved separately in organisms, the diaminopimelic acid (DAP) and aminoadipic acid (AAA) pathways. The DAP pathway synthesizes L-lysine from aspartate and pyruvate, and diaminopimelic acid is an intermediate. This pathway is utilised by most bacteria, some archaea, some fungi, some algae, and plants. The AAA pathway synthesizes L-lysine from alpha-ketoglutarate and acetyl coenzyme A (acetyl-CoA), and alpha-aminoadipic acid is an intermediate. This pathway is utilised by most fungi, some algae, the bacterium Thermus thermophilus, and probably some archaea, such as Sulfolobus, Thermoproteus, and Pyrococcus. No organism is known to possess both pathways []. There four known variations of the DAP pathway in bacteria: the succinylase, acetylase, aminotransferase, and dehydrogenase pathways. These pathways share the steps converting L-aspartate to L-2,3,4,5- tetrahydrodipicolinate (THDPA), but the subsequent steps leading to the production of meso-diaminopimelate, the immediate precursor of L-lysine, are different []. The succinylase pathway acylates THDPA with succinyl-CoA to generate N-succinyl-LL-2-amino-6-ketopimelate and forms meso-DAP by subsequent transamination, desuccinylation, and epimerization. This pathway is utilised by proteobacteria and many firmicutes and actinobacteria. The acetylase pathway is analogous to the succinylase pathway but uses N-acetyl intermediates. This pathway is limited to certain Bacillus species, in which the corresponding genes have not been identified. The aminotransferase pathway converts THDPA directly to LL-DAP by diaminopimelate aminotransferase (DapL) without acylation. This pathway is shared by cyanobacteria, Chlamydia, the archaeon Methanothermobacter thermautotrophicus, and the plant Arabidopsis thaliana. The dehydrogenase pathway forms meso-DAP directly from THDPA, NADPH, and NH4 _ by using diaminopimelate dehydrogenase (Ddh). This pathway is utilised by some Bacillus and Brevibacterium species and Corynebacterium glutamicum. Most bacteria use only one of the four variants, although certain bacteria, such as C. glutamicum and Bacillus macerans, possess both the succinylase and dehydrogenase pathways. This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity []. Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction []. Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate; PDB: 2OTN_A 3FVE_A 2Q9J_A 2GKJ_A 1GQZ_A 2Q9H_A 1BWZ_A 2GKE_A 3EKM_C 3EJX_D ....
Probab=91.05 E-value=1.1 Score=31.76 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcc
Q 047080 2 ELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVP 41 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~ 41 (165)
..||-++=++++++.+.+......+.++|.+|.+.+++..
T Consensus 67 ~aCGnG~~~~a~~~~~~~~~~~~~v~v~t~gG~l~v~~~~ 106 (121)
T PF01678_consen 67 LACGNGCRCAAAYLLEGGIVGKDEVTVETPGGILRVEVDE 106 (121)
T ss_dssp STTHHHHHHHHHHHHHTTSSSSSEEEEEETTEEEEEEEET
T ss_pred eecCcHHHHHHHHHHHCCCCcceEEEEEeCCcEEEEEEEc
Confidence 3699994444444555443346889999999999999984
No 17
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=82.79 E-value=4.2 Score=33.45 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcc
Q 047080 4 CGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVP 41 (165)
Q Consensus 4 cGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~ 41 (165)
||-++.|++.+....++... .+..++..|.|.++...
T Consensus 215 CGTGa~Aa~~~a~~~~~~~~-~v~V~~pGG~L~i~~~~ 251 (272)
T COG0253 215 CGTGACAAAVVAARLGLLDR-KVTVHLPGGTLEIEWKD 251 (272)
T ss_pred chhHHHHHHHHHHHhccCCC-cEEEEcCCCeEEEEEEc
Confidence 99999999999988877654 79999999999999873
No 18
>PRK13577 diaminopimelate epimerase; Provisional
Probab=75.54 E-value=6.2 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEc
Q 047080 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 3 lcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~ 40 (165)
=||.+..|++.++...+.. ..++.+++..|.|.|+..
T Consensus 217 AcGTga~A~a~~~~~~g~~-~~~~~V~~pGG~l~v~~~ 253 (281)
T PRK13577 217 ASGSSSCAAAAVAHRLGLC-DSSITVHMPGGQIDIEIK 253 (281)
T ss_pred cCHHHHHHHHHHHHHhCCC-CCeEEEEcCCCEEEEEEE
Confidence 4999999999888877754 347889999999999986
No 19
>PLN02536 diaminopimelate epimerase
Probab=60.45 E-value=18 Score=29.40 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEc
Q 047080 4 CGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 4 cGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~ 40 (165)
||-+..|+|.+....+.. ...+..++..|.|.|+.+
T Consensus 210 CGTGacA~a~~a~~~g~~-~~~v~V~~~GG~L~i~~~ 245 (267)
T PLN02536 210 CGTGACALVVAAVLEGRA-DRNCTVDLPGGPLEIEWR 245 (267)
T ss_pred cCccHHHHHHHHHHhCCC-CCcEEEEcCCcEEEEEEE
Confidence 999999999888877764 456889999999999986
No 20
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear.
Probab=59.91 E-value=9.9 Score=30.99 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=34.6
Q ss_pred CCCceEEEEcCChhhhcccCCChHHHhcCCCCcce--EEEecCCCCCCccEEeeecCCCCCCCCcccCC
Q 047080 98 TTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGI--IVSGLAPPESGFDFYSRFFCPKFGVNEVITRW 164 (165)
Q Consensus 98 tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv--~v~~~~~~~~~~~~~~R~FaP~~Gi~EDpaTg 164 (165)
.|++..||...+ . ++.+.+.+++++.+. .+|.........+|+.|+|.|. .|=+-||
T Consensus 17 ~GN~~~Vv~~~~--~-----l~~~~mq~iA~~~~~~et~Fv~~~~~~~~~~~~R~Fnpg---~E~~~CG 75 (297)
T TIGR00654 17 MGNPAAVVNFAE--I-----LSEEEMQAIANETNYSETTFLLKPSSEKYDYRLRIFTPR---SELPFAG 75 (297)
T ss_pred CCCceEEEcCCC--C-----CCHHHHHHHHHHhCCCceEEEcCCCCCCCceEEEEECCC---CccCcCC
Confidence 578877775432 2 355667777776432 2333221123468999999993 4777776
No 21
>TIGR00652 DapF diaminopimelate epimerase.
Probab=51.11 E-value=34 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEc
Q 047080 3 LCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 3 lcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~ 40 (165)
=||-+..|+|.++...+... ..+.+....|.|.|+++
T Consensus 211 acGTGa~A~a~a~~~~g~~~-~~~~v~~~~G~l~v~~~ 247 (268)
T TIGR00652 211 ACGTGACASAAAALKLGGTP-KKVTVHLPGGELEIEWK 247 (268)
T ss_pred ccHHHHHHHHHHHHHhCCCC-CCEEEEcCCCEEEEEEE
Confidence 39999999998887766543 34888889999988886
No 22
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=48.10 E-value=27 Score=28.99 Aligned_cols=56 Identities=18% Similarity=0.078 Sum_probs=32.8
Q ss_pred CCCceEEEEcCChhhhcccCCChHHHhcCCCCcce--EEEecCCCCCCccEEeeecCCCCCCCCcccCC
Q 047080 98 TTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGI--IVSGLAPPESGFDFYSRFFCPKFGVNEVITRW 164 (165)
Q Consensus 98 tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv--~v~~~~~~~~~~~~~~R~FaP~~Gi~EDpaTg 164 (165)
+|++--||...+ .++-+.|.++.++.+. .+|.....++ .+++.|+|.|.. |=|-||
T Consensus 18 ~GNp~aVv~~a~-------~Lsd~~MQ~IA~e~n~SET~Fv~~~~~~-~~~rlR~FTP~~---Evpf~G 75 (291)
T COG0384 18 GGNPLAVVLDAD-------GLSDEQMQAIAREFNLSETAFVLPPDDP-ADARLRIFTPTT---EVPFAG 75 (291)
T ss_pred CCCceEEEeCCC-------CCCHHHHHHHHHHhCCceeEEEcCCCCc-CceEEEEeCCCc---ccccCC
Confidence 566655555332 3444555555555333 3444443333 799999999985 666666
No 23
>PRK10281 hypothetical protein; Provisional
Probab=42.29 E-value=30 Score=28.54 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=33.5
Q ss_pred CCCceEEEEcCChhhhcccCCChHHHhcCCCCcceE--EEecCCCCCCccEEeeecCCCCCCCCcccCC
Q 047080 98 TTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGII--VSGLAPPESGFDFYSRFFCPKFGVNEVITRW 164 (165)
Q Consensus 98 tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv~--v~~~~~~~~~~~~~~R~FaP~~Gi~EDpaTg 164 (165)
.|++--||...+ .++-+.+.+++++.++- +|.....+...+|+.|+|.|.. |=|-||
T Consensus 17 ~GNpaaVv~~a~-------~L~~~~Mq~IAre~n~SETaFv~~~~~~~~~~~lR~FTP~~---Ev~fcG 75 (299)
T PRK10281 17 RGNSAGVVLNAD-------GLSEAQMQLIARELNHSETAFLLSSDDSSYDVRVRYFTPTV---EVPICG 75 (299)
T ss_pred CCCceEEEcCCC-------CCCHHHHHHHHHHhCCceEEEEccCCCCCCceEEEEECCCc---ccccCC
Confidence 466665664332 23556666666664433 3333222223479999999983 877777
No 24
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 1U0K_A 1QYA_B 1QY9_D 1SDJ_A 1U1X_A 1U1W_B 1T6K_A 1XUA_A 1XUB_A 1U1V_A ....
Probab=39.33 E-value=6.2 Score=31.75 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=34.0
Q ss_pred CCCceEEEEcCChhhhcccCCChHHHhcCCCCcce--EEEecCCCCCCccEEeeecCCCCCCCCcccCC
Q 047080 98 TTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGI--IVSGLAPPESGFDFYSRFFCPKFGVNEVITRW 164 (165)
Q Consensus 98 tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv--~v~~~~~~~~~~~~~~R~FaP~~Gi~EDpaTg 164 (165)
.|++--+|...+ .++.+.+.+++++.+. .+|.....+...+|+.|+|.|. .|=|-||
T Consensus 10 ~GNp~aVv~~~~-------~l~~~~mq~iA~e~n~sET~Fv~~~~~~~~~~~vR~FTp~---~Ev~fcG 68 (281)
T PF02567_consen 10 GGNPAAVVLDAD-------GLSDEQMQAIAREFNLSETAFVLPSTDDEADYRVRIFTPT---GEVPFCG 68 (281)
T ss_dssp SSEEEEEEESST-------TS-HHHHHHHHHHHTSSEEEEEEEESSSTTSEEEEEEESS---SEESSSH
T ss_pred CCCeEEEEEcCC-------CCCHHHHHHHHHHcCCCeeEEEEeccCCCceeEEEEEecc---CCCCCCC
Confidence 356655665554 5566667666655332 2333322234689999999996 4777666
No 25
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=38.11 E-value=1e+02 Score=20.50 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccC
Q 047080 80 SLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ 117 (165)
Q Consensus 80 ~~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~ 117 (165)
..+..++|-. .++.+. +.-++||++++++|.++-
T Consensus 27 ~kv~~afGq~--mdl~yt--n~eL~iPl~~Q~DLDkAi 60 (79)
T cd06405 27 QKVTTAFGQP--MDLHYT--NNELLIPLKNQEDLDRAI 60 (79)
T ss_pred HHHHHHhCCe--eeEEEe--cccEEEeccCHHHHHHHH
Confidence 3556788843 566543 345999999998887653
No 26
>COG3271 Predicted double-glycine peptidase [General function prediction only]
Probab=35.63 E-value=18 Score=28.51 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=9.0
Q ss_pred CChHHHHHHHH
Q 047080 4 CGHATLAAAHT 14 (165)
Q Consensus 4 cGHaTlAaa~~ 14 (165)
|||+||++---
T Consensus 44 cGaaalatll~ 54 (201)
T COG3271 44 CGAAALATLLN 54 (201)
T ss_pred chHHHHHHHHH
Confidence 99999998543
No 27
>PRK00450 dapF diaminopimelate epimerase; Provisional
Probab=34.26 E-value=87 Score=25.07 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~ 40 (165)
|=||-++-|.|.++...+.. ...+++....|.|.|+++
T Consensus 214 ~a~GTg~~a~a~~~~~~g~~-~~~~~v~~r~G~l~v~~~ 251 (274)
T PRK00450 214 LACGTGACAAAVAAIRLGLL-DRKVTVHLPGGDLTIEWK 251 (274)
T ss_pred cccccchHHHHHHHHHhCCC-CCcEEEEcCCCEEEEEEE
Confidence 35888888887777666554 345777788999988885
No 28
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=33.70 E-value=13 Score=22.83 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=6.3
Q ss_pred CCCChHHHH
Q 047080 2 ELCGHATLA 10 (165)
Q Consensus 2 plcGHaTlA 10 (165)
||||++.+.
T Consensus 7 PFCG~~~~~ 15 (61)
T PF14354_consen 7 PFCGSADVL 15 (61)
T ss_pred CCCCCcceE
Confidence 788877654
No 29
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=29.70 E-value=40 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.607 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHHHHhcCC
Q 047080 2 ELCGHATLAAAHTLFSTDL 20 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~ 20 (165)
||||.+|+..-+++.....
T Consensus 35 P~CGsGtiliEaa~~~~~~ 53 (179)
T PF01170_consen 35 PFCGSGTILIEAALMGANI 53 (179)
T ss_dssp TT-TTSHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHhhCc
Confidence 8999999998887765543
No 30
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=26.49 E-value=38 Score=24.00 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=10.7
Q ss_pred CCChHHHHHHHHHH
Q 047080 3 LCGHATLAAAHTLF 16 (165)
Q Consensus 3 lcGHaTlAaa~~L~ 16 (165)
-||||++++...+.
T Consensus 19 Q~~HAa~~~~~~~~ 32 (113)
T PRK04322 19 QVAHAAVSAYEKAD 32 (113)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999875443
No 31
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=24.79 E-value=41 Score=23.94 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=11.2
Q ss_pred CCChHHHHHHHHHHh
Q 047080 3 LCGHATLAAAHTLFS 17 (165)
Q Consensus 3 lcGHaTlAaa~~L~~ 17 (165)
-||||++++...+.+
T Consensus 21 Q~~HAa~~~~~~~~~ 35 (115)
T TIGR00283 21 QVCHAAIIGFLKSKR 35 (115)
T ss_pred HHHHHHHHHHHHHHh
Confidence 499999998755543
No 32
>PRK14980 DNA-directed RNA polymerase subunit G; Provisional
Probab=24.57 E-value=14 Score=26.74 Aligned_cols=9 Identities=22% Similarity=0.896 Sum_probs=6.8
Q ss_pred CCCChHHHH
Q 047080 2 ELCGHATLA 10 (165)
Q Consensus 2 plcGHaTlA 10 (165)
+||||+.+-
T Consensus 70 dFCghGyvV 78 (127)
T PRK14980 70 DFCAHGYIV 78 (127)
T ss_pred eeecCcEEE
Confidence 689998653
No 33
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.13 E-value=51 Score=25.61 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHHHhcC
Q 047080 3 LCGHATLAAAHTLFSTD 19 (165)
Q Consensus 3 lcGHaTlAaa~~L~~~~ 19 (165)
-|+||+++...-|.++.
T Consensus 96 Qc~HAalg~Y~~l~~~~ 112 (190)
T KOG3282|consen 96 QCAHAALGVYKHLMQRD 112 (190)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 49999999988777654
No 34
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=22.90 E-value=47 Score=23.57 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=11.3
Q ss_pred CCChHHHHHHHHHHh
Q 047080 3 LCGHATLAAAHTLFS 17 (165)
Q Consensus 3 lcGHaTlAaa~~L~~ 17 (165)
-||||++++.+.+.+
T Consensus 21 Q~~HAa~~~~~~~~~ 35 (115)
T cd02407 21 QCAHAALAAYKKAMK 35 (115)
T ss_pred HHHHHHHHHHHHHHh
Confidence 489999998765543
No 35
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=22.01 E-value=45 Score=23.40 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.6
Q ss_pred CCChHHHHHHHHHH
Q 047080 3 LCGHATLAAAHTLF 16 (165)
Q Consensus 3 lcGHaTlAaa~~L~ 16 (165)
-||||++++...+.
T Consensus 22 Q~~HAa~~~~~~~~ 35 (116)
T PF01981_consen 22 QCAHAAVAAYAKLH 35 (116)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 38999999997764
No 36
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=21.22 E-value=57 Score=23.18 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=11.4
Q ss_pred CCChHHHHHHHHHHh
Q 047080 3 LCGHATLAAAHTLFS 17 (165)
Q Consensus 3 lcGHaTlAaa~~L~~ 17 (165)
-||||++++...+.+
T Consensus 21 Q~~HAa~~~~~~~~~ 35 (115)
T cd02430 21 QCAHAALGAYKKAMK 35 (115)
T ss_pred HHHHHHHHHHHHHHh
Confidence 499999998765543
No 37
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=20.66 E-value=42 Score=17.41 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=4.2
Q ss_pred CCCChH
Q 047080 2 ELCGHA 7 (165)
Q Consensus 2 plcGHa 7 (165)
|+|||-
T Consensus 18 p~CG~~ 23 (26)
T PF10571_consen 18 PHCGYD 23 (26)
T ss_pred CCCCCC
Confidence 678873
Done!