Query 047080
Match_columns 165
No_of_seqs 121 out of 1029
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dun_A Putative phenazine bios 100.0 5.1E-31 1.8E-35 212.6 13.1 137 1-165 69-205 (263)
2 3edn_A Phenazine biosynthesis 99.9 1.4E-26 4.7E-31 189.0 14.0 148 1-164 70-230 (299)
3 1ym5_A YHI9, hypothetical 32.6 99.9 6.2E-27 2.1E-31 191.4 9.9 145 1-164 77-228 (300)
4 1s7j_A Phenazine biosynthesis 99.9 4.5E-26 1.5E-30 183.0 11.6 138 1-165 68-205 (262)
5 1xub_A Phenazine biosynthesis 99.9 9.4E-26 3.2E-30 184.3 12.5 141 1-164 89-232 (298)
6 1qya_A ORFB, hypothetical prot 99.9 2.4E-26 8.3E-31 188.2 8.0 146 1-164 79-236 (307)
7 1u0k_A Gene product PA4716; sc 99.9 1.1E-22 3.7E-27 165.3 8.6 139 1-164 72-222 (288)
8 2gke_A DAP epimerase, diaminop 99.9 2.9E-22 9.9E-27 161.5 4.9 142 1-164 70-218 (274)
9 2otn_A Diaminopimelate epimera 99.8 9.8E-20 3.3E-24 149.2 8.8 145 1-164 93-247 (308)
10 2azp_A Hypothetical protein PA 99.8 5.4E-19 1.8E-23 145.2 6.0 131 1-164 87-239 (318)
11 3fve_A DAP epimerase, diaminop 99.3 1.3E-11 4.3E-16 100.5 12.4 138 1-164 85-228 (290)
12 1w61_A B-cell mitogen; racemas 99.3 1.6E-12 5.5E-17 110.5 3.9 141 1-164 127-301 (414)
13 1tm0_A Proline racemase; struc 99.2 3.1E-12 1.1E-16 106.4 4.2 140 1-164 87-256 (350)
14 3ejx_A DAP epimerase, diaminop 98.5 7E-08 2.4E-12 79.2 3.4 142 1-164 96-255 (317)
15 2pw0_A PRPF methylaconitate is 75.4 3.6 0.00012 34.5 4.8 39 2-40 105-153 (397)
16 3ejx_A DAP epimerase, diaminop 68.3 12 0.00043 30.1 6.4 36 4-40 254-289 (317)
17 3fve_A DAP epimerase, diaminop 67.9 10 0.00035 30.2 5.8 37 3-40 226-263 (290)
18 2gke_A DAP epimerase, diaminop 58.8 28 0.00096 26.7 6.7 38 2-40 215-252 (274)
19 2otn_A Diaminopimelate epimera 55.2 19 0.00066 28.3 5.3 39 2-40 244-283 (308)
20 2cu1_A Mitogen-activated prote 39.7 46 0.0016 22.3 4.3 34 80-117 35-68 (103)
21 2jrh_A Mitogen-activated prote 36.3 73 0.0025 20.9 4.8 34 80-117 31-64 (94)
22 2c60_A Human mitogen-activated 34.5 69 0.0024 21.6 4.5 33 80-116 58-90 (111)
23 2npt_B Mitogen-activated prote 34.1 83 0.0028 20.9 4.8 33 80-116 47-79 (100)
24 1xub_A Phenazine biosynthesis 32.8 70 0.0024 24.9 5.2 39 2-40 229-273 (298)
25 1wn2_A Peptidyl-tRNA hydrolase 30.6 17 0.0006 25.0 1.1 14 4-17 28-41 (121)
26 1xty_A PTH, peptidyl-tRNA hydr 30.4 17 0.00058 24.9 1.1 14 4-17 23-36 (120)
27 1u0k_A Gene product PA4716; sc 29.5 88 0.003 24.1 5.3 39 2-40 219-263 (288)
28 4ayb_G DNA-directed RNA polyme 29.3 5 0.00017 28.4 -1.9 8 2-9 70-77 (132)
29 2zv3_A PTH, peptidyl-tRNA hydr 29.3 19 0.00065 24.5 1.1 15 3-17 21-35 (115)
30 1q7s_A BIT1, protein CGI-147; 28.0 18 0.00063 24.7 0.9 13 4-16 24-36 (117)
31 1rlk_A Hypothetical protein TA 27.7 19 0.00066 24.5 0.9 14 4-17 24-37 (117)
32 1qya_A ORFB, hypothetical prot 26.8 88 0.003 24.3 4.9 39 2-40 233-280 (307)
33 3g7k_A 3-methylitaconate isome 23.7 1.1E+02 0.0037 25.4 4.9 39 2-40 94-138 (391)
34 1ym5_A YHI9, hypothetical 32.6 20.0 97 0.0033 24.0 3.8 39 2-40 225-269 (300)
No 1
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=99.97 E-value=5.1e-31 Score=212.59 Aligned_cols=137 Identities=29% Similarity=0.484 Sum_probs=117.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS 80 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~ 80 (165)
+|||||||+|++++|++.+....++++|+|++|.|+|++.. +. ++|++|.+.+.+.. ..+
T Consensus 69 v~~CGHatl~~a~~l~~~~~~~~~~~~~et~aG~l~v~~~~----------------~~--i~m~~p~~~~~~~~--~~~ 128 (263)
T 4dun_A 69 IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNG----------------NL--YEMIFPEIMPIEIE--LSP 128 (263)
T ss_dssp ESCCHHHHHHHHHHHHHHTSTTCSEEEEEETTEEEEEEEET----------------TE--EEEEEECCCCEECC--CCH
T ss_pred eccCCcHHHHHHHHHHHhcCCCCCeEEEEeCCeEEEEEEeC----------------CE--EEEeCCCCCccCCC--CHH
Confidence 58999999999999999876556789999999999999873 34 78888887776654 346
Q ss_pred HHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCCCCCCCc
Q 047080 81 LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEV 160 (165)
Q Consensus 81 ~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~~Gi~ED 160 (165)
+++++||+.+ .++. +| ++++|+|+|.++|++++||++++.+++...|+++|+.. .+.+|++|+|+|+.| +||
T Consensus 129 ~l~~aLg~~~-~~v~--~g-~~~~v~l~~~~~l~~l~pd~~~l~~l~~~~gv~v~~~~---~~~d~~~R~FaP~~G-~ED 200 (263)
T 4dun_A 129 QQANLIGCVP-SDVY--SS-RDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELD-SED 200 (263)
T ss_dssp HHHHHSSSCC-SEEE--ES-SSEEEECSCHHHHHHCCCCHHHHTTCTTCSCEEEEEEC---SSSSEEEEEEETTTT-EEE
T ss_pred HHHHHcCCCH-HHeE--cC-CcEEEEECCHHHHHhCCCCHHHHHHhcCCceEEEEecC---CCceEEEEeecCCCC-CCC
Confidence 8999999987 6663 35 47999999999999999999999999766799999874 358999999999999 999
Q ss_pred ccCCC
Q 047080 161 ITRWF 165 (165)
Q Consensus 161 paTg~ 165 (165)
||||-
T Consensus 201 PvTGS 205 (263)
T 4dun_A 201 PVTGS 205 (263)
T ss_dssp SCCST
T ss_pred cccch
Confidence 99993
No 2
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=99.94 E-value=1.4e-26 Score=189.04 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=116.5
Q ss_pred CCCCChHHHHHHHHHHhcCCC-CCCeEEEEeccceEEEEEc-ccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCcc
Q 047080 1 MELCGHATLAAAHTLFSTDLV-NSNTVEFATLSGILTAKKV-PYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSE 78 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~-~~~~i~~et~~G~l~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~ 78 (165)
+|||||||+|+|++|++.+.. ..++++|+|++|.+++++. . .++ .++++|+++.+.+.+... .
T Consensus 70 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~~eT~aG~l~v~~~~~----------~~~----~~~v~v~~~~p~~~~~~~-~ 134 (299)
T 3edn_A 70 MDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVN----------ENG----ETFIKMRQTAPQFKDFAG-S 134 (299)
T ss_dssp ESCCHHHHHHHHHHHHHTTCSCSCSEEEEEETTEEEEEEEEEC----------TTS----CEEEEEECCCCEEEECCS-C
T ss_pred cccCccHHHHHHHHHHHcCCCCCCCEEEEEcCceEEEEEEEEc----------CCC----cEEEEEEcCCccccCCCC-C
Confidence 589999999999999998765 3578999999999999986 2 122 224677776665544322 3
Q ss_pred HHHHHHHhCCCceee-------EEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC---cceEEEecCCCCCCccEEe
Q 047080 79 VSLILKALGVSSVVD-------MKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR---RGIIVSGLAPPESGFDFYS 148 (165)
Q Consensus 79 ~~~l~~algl~~~~~-------i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~---~gv~v~~~~~~~~~~~~~~ 148 (165)
.++++++||+.. .+ ..+++|++|++++|+|.++|.++.||++++.++.++ .++++++..+.+.+.++++
T Consensus 135 ~~~~~~~l~~~~-~~~~~~~~~~~vs~G~ph~vv~v~~~~~l~~~~p~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~ 213 (299)
T 3edn_A 135 KEELAHSIGLEV-NDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHG 213 (299)
T ss_dssp HHHHHHHTTCCG-GGBCTTSCCEEEESSSEEEEEEBSCHHHHHHCCCCGGGHHHHCSSSTTCEEEEEESCCSSTTCSEEE
T ss_pred HHHHHHHhCCCh-hHcccCCCeEEEEcCCCeEEEEeCCHHHHhhCCCCHHHHHHHHhhcCccEEEEEEecCCCCCccEEE
Confidence 567888999875 22 136899999999999999999999999999887654 3678887765445689999
Q ss_pred eecCCCC-CCCCcccCC
Q 047080 149 RFFCPKF-GVNEVITRW 164 (165)
Q Consensus 149 R~FaP~~-Gi~EDpaTg 164 (165)
|+|+|.. |+.||||||
T Consensus 214 R~f~p~~~Gv~EdpatG 230 (299)
T 3edn_A 214 RHFSSAYAGTIEDPVTG 230 (299)
T ss_dssp CEECCTTSSCSEESSCH
T ss_pred eccccccCCCcCCCccc
Confidence 9999764 999999998
No 3
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.2e-27 Score=191.37 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=115.6
Q ss_pred CCCCChHHHHHHHHHHhcCCCC-CCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccH
Q 047080 1 MELCGHATLAAAHTLFSTDLVN-SNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEV 79 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~-~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~ 79 (165)
+|||||||+|+|++|++.+... .++++|+|++|+++|++.. +. ++|.+|.....+++....
T Consensus 77 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~~et~aG~l~v~~~~----------------~~--v~m~~p~~~~~~i~~~~~ 138 (300)
T 1ym5_A 77 LPFAGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITINE----------------GL--ISFKAPMADYESISSEMI 138 (300)
T ss_dssp ESCCHHHHHHHHHHHHHHTTCSCCSEEEEEETTEEEEEEEET----------------TE--EEEECSCCEEEECCHHHH
T ss_pred cCcCCCcHHHHHHHHHHhCCCCCCceEEEEeCCeEEEEEEcC----------------CE--EEEecCCCCccccCcccH
Confidence 5899999999999999887654 4679999999999999862 23 789999876555542223
Q ss_pred HHHHHHhCCCce--eeEEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC---cceEEEecCCCC-CCccEEeeecCC
Q 047080 80 SLILKALGVSSV--VDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR---RGIIVSGLAPPE-SGFDFYSRFFCP 153 (165)
Q Consensus 80 ~~l~~algl~~~--~~i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~---~gv~v~~~~~~~-~~~~~~~R~FaP 153 (165)
++++++||+... .. .+++|+++++|+|+|.+.|.+++||++++.++.++ .|+++|+..... .+.++++|+|+|
T Consensus 139 ~~~~~~lg~~~~~~~~-~v~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~R~f~p 217 (300)
T 1ym5_A 139 ADYEKAIGLKFIKPPA-LLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAP 217 (300)
T ss_dssp HHHHHHHTSCCSSCCE-EEESSSEEEEEECSCHHHHHHCCCCHHHHHHHHHHHTCCEEEEEEECTTCSSTTEEEEEEEEG
T ss_pred HHHHHhcCCCccCCcE-EEEcCCCEEEEEECCHHHHHhCCCCHHHHHHHHhhcCCcEEEEEEecCCCCCCceEEEEeccc
Confidence 467788998531 22 37899999999999999999999999999887532 378887765422 357899999999
Q ss_pred CCCCCCcccCC
Q 047080 154 KFGVNEVITRW 164 (165)
Q Consensus 154 ~~Gi~EDpaTg 164 (165)
+.|+.||||||
T Consensus 218 ~~Gv~EdpatG 228 (300)
T 1ym5_A 218 VINVYEDPVCG 228 (300)
T ss_dssp GGTEEEESSCH
T ss_pred ccCCCCCCcch
Confidence 99999999998
No 4
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2
Probab=99.93 E-value=4.5e-26 Score=183.04 Aligned_cols=138 Identities=34% Similarity=0.474 Sum_probs=115.0
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS 80 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~ 80 (165)
+|||||||+|+|++|++.+....+++.|+|++|.++++++. +. ++|.+|.....+++ ..+
T Consensus 68 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~et~~G~l~v~~~~----------------~~--v~m~~p~~~~~~~~--~~~ 127 (262)
T 1s7j_A 68 IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKE----------------EY--YYLDFPYILPERIP--ILP 127 (262)
T ss_dssp ESCCHHHHHHHHHHHHHHSCCCSSEEEEEETTEEEEEEEET----------------TE--EEEEEECCCCEECC--CCH
T ss_pred cCcCchHHHHHHHHHHHhcCCCCCeEEEEeCceEEEEEEEC----------------CE--EEEecCCCCccCCC--ChH
Confidence 58999999999999998876666789999999999999862 23 77999887665554 235
Q ss_pred HHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCCCCCCCc
Q 047080 81 LILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGVNEV 160 (165)
Q Consensus 81 ~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~~Gi~ED 160 (165)
+++++||+.. .++ +++ ++++|++++.+.|.++.||++++.++..+.|+++|+.. .+.++++|+|+|+.|+.||
T Consensus 128 ~~~~~l~~~~-~~~-~~~--ph~vv~v~~~~~l~~~~p~~~~~~~~~~~~gv~vf~~~---~~~~~~~R~f~p~~Gv~Ed 200 (262)
T 1s7j_A 128 EYEAALGTKI-YEA-YLG--RDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTASG---DSVDFVSRTFFPKLRINED 200 (262)
T ss_dssp HHHHHHTSCC-SEE-EES--SSEEEECSCHHHHHHCCCCHHHHHHCSSCSSEEEEEEC---SSSSEEEEEEEGGGTEEEE
T ss_pred HHHHHcCCCh-HHe-Eec--CeEEEEECCHHHHHhCCCCHHHHHhhcccCcEEEEEec---CCCeEEEEeccccCCCCCc
Confidence 6778899876 555 454 89999999999999999999999998763588888864 3578999999999999999
Q ss_pred ccCCC
Q 047080 161 ITRWF 165 (165)
Q Consensus 161 paTg~ 165 (165)
||||-
T Consensus 201 ~acGS 205 (262)
T 1s7j_A 201 PVCGS 205 (262)
T ss_dssp SCCST
T ss_pred CcchH
Confidence 99993
No 5
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=99.93 E-value=9.4e-26 Score=184.29 Aligned_cols=141 Identities=24% Similarity=0.302 Sum_probs=113.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS 80 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~ 80 (165)
+|||||||+|+|++|++. . ..+++.|+|++|+++|++.. .++ ....++|++|.+...+.. ...
T Consensus 89 ~~~CGhat~~~a~~l~~~-~-~~~~~~~eT~aG~l~v~~~~----------~~~---~~~~v~m~~p~~~~~~~~--~~~ 151 (298)
T 1xub_A 89 LPFAGAPLLGTAIALGAH-T-DNHRLYLETQMGTIAFELER----------QNG---SVIAASMDQPIPTWTALG--RDA 151 (298)
T ss_dssp ESCCHHHHHHHHHHHHTT-C-CCSEEEEEETTEEEEEEEEE----------ETT---EEEEEEEECCCCEEEECS--CHH
T ss_pred cCcCchHHHHHHHHHHHh-C-CCCeEEEEeCCEEEEEEEEc----------CCC---ceEEEEEECCCCcccCCC--ChH
Confidence 589999999999999976 3 55789999999999999863 110 112478999987665554 345
Q ss_pred HHHHHhCCCceee---EEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCCCCC
Q 047080 81 LILKALGVSSVVD---MKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPKFGV 157 (165)
Q Consensus 81 ~l~~algl~~~~~---i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~~Gi 157 (165)
+++++||+.. .+ ..+++|+++++|++++.++|.++.||++++.++.. .++++++..+ .++++|+|+|+.|+
T Consensus 152 ~~~~~lg~~~-~~~~~~~v~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~-~~v~~~~~~~----~~~~~R~f~p~~Gv 225 (298)
T 1xub_A 152 ELLKALGISD-STFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHD-MAINCFAGAG----RRWRSRMFSPAYGV 225 (298)
T ss_dssp HHHHHHTCSC-CSSCCEEEESSSEEEEEECSSHHHHHHCCCCHHHHTTSCS-CEEEEEEEET----TEEEEEEEBGGGTB
T ss_pred HHHHhcCCCC-cCCCeEEEECCCCEEEEEECCHHHHHhCCCCHHHHHhhhc-cEEEEEEcCC----CCEEEEeCccccCC
Confidence 7788899864 21 23689999999999999999999999999998876 5788887642 24999999999999
Q ss_pred CCcccCC
Q 047080 158 NEVITRW 164 (165)
Q Consensus 158 ~EDpaTg 164 (165)
.||||||
T Consensus 226 ~EdpatG 232 (298)
T 1xub_A 226 VEDAATG 232 (298)
T ss_dssp SSCSCCH
T ss_pred CCcchhh
Confidence 9999998
No 6
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=99.93 E-value=2.4e-26 Score=188.21 Aligned_cols=146 Identities=22% Similarity=0.270 Sum_probs=110.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCC-eEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCC-CCCCcc
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSN-TVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTA-DLNFSE 78 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~-~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~-~~~~~~ 78 (165)
+|||||||+|+|+ |++.+....+ ++.|+|++|+++|++.. .++ ...++|++|.+... +++...
T Consensus 79 ~~~CGh~t~~~a~-l~~~g~~~~~~~~~~et~aG~l~v~~~~----------~~~----~~~v~~~~p~~~~~~~i~~~~ 143 (307)
T 1qya_A 79 VPICGHATVAAHY-VRAKVLGLGNCTIWQTSLAGKHRVTIEK----------HND----DYRISLEQGTPGFEPPLEGET 143 (307)
T ss_dssp ECC--CHHHHHHH-HHHHHHTCCSEEEEEECC--CEEEEEEE----------ETT----EEEEEEECCCCEECCCBCTHH
T ss_pred eCCCchHHHHHHH-HHHhCCCCCCceEEEEcCCeEEEEEEEc----------cCC----cceEEEecCCCcccCcCCccC
Confidence 5899999999999 9887654444 79999999999999862 111 12478999987665 444212
Q ss_pred HHHHHHHhCCCceee-------EEEeCCCceEEEEcCChhhhcccCCChHHHhcCCCC---cceEEEecCCCCCCccEEe
Q 047080 79 VSLILKALGVSSVVD-------MKITTTCEDIFVVLPSAKSVADLQPKFDEMKKCPGR---RGIIVSGLAPPESGFDFYS 148 (165)
Q Consensus 79 ~~~l~~algl~~~~~-------i~~~tg~~~lvv~l~~~~~L~~l~pd~~~l~~~~~~---~gv~v~~~~~~~~~~~~~~ 148 (165)
..+++++||+.. .+ ..+++|++|++|++++.++|.++.||++++.++.++ .++++|+.. .++.++++
T Consensus 144 ~~~~~~~lg~~~-~~~~~~~~~~~v~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~~~ 220 (307)
T 1qya_A 144 RAAIINALHLTE-DDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIR--PGKNETDG 220 (307)
T ss_dssp HHHHHHHTTCCG-GGBCTTCCBEEEESSSCEEEEEBCTTSCGGGCCCCHHHHHHHHHHHTCCCEEEEEEC--TTSSEEEE
T ss_pred hHHHHHHcCCCH-HHhcccCCcEEEeCCCCEEEEEECCHHHHhhCCCCHHHHHHHHhhcCCcEEEEEEEc--CCCCeEEE
Confidence 456778999875 22 136899999999999999999999999999877532 378888874 23578999
Q ss_pred eecCCCCCCCCcccCC
Q 047080 149 RFFCPKFGVNEVITRW 164 (165)
Q Consensus 149 R~FaP~~Gi~EDpaTg 164 (165)
|+|+|+.|+.||||||
T Consensus 221 R~f~p~~Gv~EdpacG 236 (307)
T 1qya_A 221 RMFSPAIGIVEDPVTG 236 (307)
T ss_dssp CEEEGGGTEEEESSCH
T ss_pred EecCCcCCCCCCCCcc
Confidence 9999999999999998
No 7
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=99.87 E-value=1.1e-22 Score=165.27 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=103.9
Q ss_pred CCCCChHHHHHHHHHH-hcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcce-eEEEEeCCCCCCC-CCCCc
Q 047080 1 MELCGHATLAAAHTLF-STDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQEC-YFIELDFPAAPTA-DLNFS 77 (165)
Q Consensus 1 vplcGHaTlAaa~~L~-~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~P~~~~~-~~~~~ 77 (165)
+|||||||+|+|++|+ +.+....++++|+|++|++++++.. .+ +. +.++| +|.+.+. +++..
T Consensus 72 ~~~CGh~t~~~a~~l~~~~g~~~~~~~~~et~aG~~~v~~~~----------~~----~~~~~v~m-~~~p~~~~~~~~~ 136 (288)
T 1u0k_A 72 LPFAGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVR----------AG----SGFYAEMD-QGRAEFGATPDAG 136 (288)
T ss_dssp CCSCCTHHHHHHHHHHHHHCCSSCEEEEEECSSCEEEEEEEE----------ET----TEEEEEEE-EEECEECCCCCHH
T ss_pred eCcCchHHHHHHHHHHHhcCCCCCceEEEEeCCeEEEEEEEe----------CC----CceeeEEE-cCCCCccccCCcc
Confidence 6899999999999999 8876655789999999999999852 11 22 34677 6655442 23211
Q ss_pred cHHHHHHHhCCCceeeE------EEeCCCceEEEEcCChhhhcccC--CChHHHhcCCCCcceE-EEecCCCCCCccEEe
Q 047080 78 EVSLILKALGVSSVVDM------KITTTCEDIFVVLPSAKSVADLQ--PKFDEMKKCPGRRGII-VSGLAPPESGFDFYS 148 (165)
Q Consensus 78 ~~~~l~~algl~~~~~i------~~~tg~~~lvv~l~~~~~L~~l~--pd~~~l~~~~~~~gv~-v~~~~~~~~~~~~~~ 148 (165)
..++++++||+.. .++ .+++|++|++|+++ .+.|.++. ||++ .++ .+.|+. +|+... + ++++
T Consensus 137 ~~~~~~~~lg~~~-~~~~~~~~~~v~~G~p~~vv~v~-~~~l~~l~~~p~~~--~~~-~~~g~~~~~~~~~---~-~~~~ 207 (288)
T 1u0k_A 137 TCRWFAEAFSLSA-NDLSGHPPRVVSTGLPYLLLPVT-AEALGRARQVNDLQ--EAL-DKLGAAFVYLLDV---D-GREG 207 (288)
T ss_dssp HHHHHHHHTTCCG-GGBCSSCCEEEESSSCEEEEEBC-HHHHHTCCCCSCCH--HHH-HHHTCSEEEEEET---T-TTEE
T ss_pred cHHHHHHHhCCCh-HHhccCCcEEEeCCCCeEEEEec-HHHHhhhhcCCChh--Hhh-cccCceEEEEcCC---C-eEEE
Confidence 1356778899875 332 26899999999999 99999999 9998 555 323554 466531 2 7999
Q ss_pred eecCCCCCCCCcccCC
Q 047080 149 RFFCPKFGVNEVITRW 164 (165)
Q Consensus 149 R~FaP~~Gi~EDpaTg 164 (165)
|+|. +.|+.||||||
T Consensus 208 R~f~-~~Gv~Ed~acG 222 (288)
T 1u0k_A 208 RTWD-NLGLVEDVATG 222 (288)
T ss_dssp ECBC-TTSCSBCSCCH
T ss_pred Eecc-CCCCcCcccch
Confidence 9999 99999999998
No 8
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=99.85 E-value=2.9e-22 Score=161.48 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=100.0
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCcc-H
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSE-V 79 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~-~ 79 (165)
+|||||||+|+|++|++.+....+++.|+|++|.+++++.. + +. ++|++|.+.+.+...+. .
T Consensus 70 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~et~aG~~~v~~~~-----------~----~~--v~v~~~~p~~~~~~~~~~~ 132 (274)
T 2gke_A 70 VSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKD-----------D----NQ--IRVNMGEPIWEPAKIPFTA 132 (274)
T ss_dssp ESCCHHHHHHHHHHHHHTTSCCCSEEEEECSSCEEEEEECT-----------T----SC--EEEECCCCBCCGGGTTCCC
T ss_pred HHhCcChHHHHHHHHHHhCCCCCceEEEEeCCceEEEEEeC-----------C----Ce--EEEECCCcccccccCcccc
Confidence 58999999999999999876666789999999999999852 2 24 56666655443221100 0
Q ss_pred HHHHHHhCCCce-e---eEEEeCCCceEEEEcCChhh--hcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeeecCC
Q 047080 80 SLILKALGVSSV-V---DMKITTTCEDIFVVLPSAKS--VADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCP 153 (165)
Q Consensus 80 ~~l~~algl~~~-~---~i~~~tg~~~lvv~l~~~~~--L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP 153 (165)
++++++|++... . -..+++|++|++|++++.+. |.++.|+++.+..+.+..++.++... .+.++++|+|.|
T Consensus 133 ~~~~~~l~l~~~~~~~~~~~v~~G~~h~vv~v~~~~~~~l~~~~~~~~~~~~~p~~~~v~~~~~~---~~~~~~~R~f~~ 209 (274)
T 2gke_A 133 NKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQII---NKEHIKLRVYER 209 (274)
T ss_dssp SSCCSSEEEECSSCEEEEEEEESSSEEEEEECSCTTTSCHHHHHHHHHTCTTCTTCCEEEEEEEE---ETTEEEEEEEET
T ss_pred ccccceeEEEeCCcEEEEEEEECCcCEEEEEeCCCChhhHHHHhHHHhhCccCCCCcEEEEEEEe---CCCEEEEEEECC
Confidence 113344555320 1 12368999999999999888 78888888877666544466665543 235799999998
Q ss_pred CCCCCCcccCC
Q 047080 154 KFGVNEVITRW 164 (165)
Q Consensus 154 ~~Gi~EDpaTg 164 (165)
|+.||||||
T Consensus 210 --Gv~Ed~acG 218 (274)
T 2gke_A 210 --GAGETQACG 218 (274)
T ss_dssp --TTEECSCCH
T ss_pred --CCCCCCCch
Confidence 589999998
No 9
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=99.80 E-value=9.8e-20 Score=149.22 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=94.3
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCccee---EEEEeCCCCCCCCCCCc
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECY---FIELDFPAAPTADLNFS 77 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~P~~~~~~~~~~ 77 (165)
+|||||||+|+|++|++.+....++++|+|++|+++|++.. .++ .+ ++.|..|.....+++..
T Consensus 93 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~eT~aG~l~v~~~~----------~~~----~v~~v~v~~~~P~~~~~~~~~~ 158 (308)
T 2otn_A 93 GKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTV----------EEG----KVTLAKIDMGAPRLTRAEIPML 158 (308)
T ss_dssp ECCTTTTHHHHHHHHHHTTSCSSSEEEEEETTEEEEEEEEE----------SSS----SEEEEEEEEECCBCSGGGTTCC
T ss_pred HHhCcChHHHHHHHHHHcCCCCCCeEEEEeCCeEEEEEEEe----------CCC----EEEEEEEECCCceecccceeee
Confidence 58999999999999999876666789999999999999842 122 33 45555565432222210
Q ss_pred cHHH-----HHHHhCCCceeeEEEeCCCceEEEEcCChh--hhcccCCChHHHhcCCCCcceEEEecCCCCCCccEEeee
Q 047080 78 EVSL-----ILKALGVSSVVDMKITTTCEDIFVVLPSAK--SVADLQPKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRF 150 (165)
Q Consensus 78 ~~~~-----l~~algl~~~~~i~~~tg~~~lvv~l~~~~--~L~~l~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~ 150 (165)
.... +.-.++.....-..+++|.++++|+|++.+ .|.++.|+++.+..+....++..+... .+.++++|+
T Consensus 159 ~~~~~~~~~l~i~~~~~~~~~~~v~~G~ph~vv~v~~~~~~~l~~l~p~~~~~~~~~~~~nv~~v~v~---~~~~~~~R~ 235 (308)
T 2otn_A 159 GEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEIL---NEEEMNFRV 235 (308)
T ss_dssp SSCCSSSEEEEEEETTEEEEEEEEESSSEEEEEECSCGGGSCTTTHHHHHHTCTTCTTCCEEEEEEEE---ETTEEEEEE
T ss_pred ccccccceeEEEEECCEEEEEEEEeCCCCcEEEEcCCcCHHHHHHHHHHHhhCccCCCCeeEEEEEEe---CCCeEEEEE
Confidence 0000 000111111001236899999999999975 567888998887776544344322221 135799999
Q ss_pred cCCCCCCCCcccCC
Q 047080 151 FCPKFGVNEVITRW 164 (165)
Q Consensus 151 FaP~~Gi~EDpaTg 164 (165)
|.| |+.||||||
T Consensus 236 fe~--Gv~Ed~acG 247 (308)
T 2otn_A 236 WER--GSGVTQACG 247 (308)
T ss_dssp ECS--SSCBCSCCH
T ss_pred eCC--CCCCCCCCH
Confidence 998 579999998
No 10
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=99.76 E-value=5.4e-19 Score=145.16 Aligned_cols=131 Identities=17% Similarity=0.156 Sum_probs=93.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEe-CCCCCCCCCCCccH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELD-FPAAPTADLNFSEV 79 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~P~~~~~~~~~~~~ 79 (165)
+|||||||+|+|++|++.+....++++|+|++|.+++++.. + +. ++|. +|.....+ .. ..
T Consensus 87 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~eT~aG~v~v~~~~-----------~----~~--v~m~~~P~~~~~~-~~-~~ 147 (318)
T 2azp_A 87 LGMCGHGTIGLVASLAHLGRIGPGVHRIETPVGEVEATLHE-----------D----GS--VSVRNVPAYRYRR-QV-SV 147 (318)
T ss_dssp CSCCHHHHHHHHHHHHHTTSCCSEEEEEECTTCCEEEEECT-----------T----SC--EEEECSCBEEEEE-EE-EE
T ss_pred cCcCccHHHHHHHHHHHcCCCCCCEEEEEeCcEEEEEEEec-----------C----Ce--EEEEecCcccccC-Cc-eE
Confidence 68999999999999999876655689999999999999862 2 23 5777 77643321 10 00
Q ss_pred HHHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccCC-ChHHHhcCCC------------------CcceEEEecCCC
Q 047080 80 SLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQP-KFDEMKKCPG------------------RRGIIVSGLAPP 140 (165)
Q Consensus 80 ~~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~p-d~~~l~~~~~------------------~~gv~v~~~~~~ 140 (165)
+ .+.+| ....++ +++|.+|++|++++. +++| |..+|.++.. -.+++++..
T Consensus 148 -~-~~~lg-~~~~~~-v~~G~~~~vv~v~~~----~l~p~d~~~l~~l~~~i~~~~~~~~~~~p~~~nv~~v~v~~~--- 216 (318)
T 2azp_A 148 -E-VPGIG-RVSGDI-AWGGNWFFLVAGHGQ----RLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFAD--- 216 (318)
T ss_dssp -E-ETTTE-EEEEEE-EESSSEEEEEESCCC----CCSTTCHHHHHHHHHHHHHHHHHTTCBCTTSCBCCEEEEEEE---
T ss_pred -e-cccCC-ceeEEE-EeCCceEEEEECCCc----ccccccHHHHHHHHHHHHHHHhhcCCCcCCcCceEEEEEEeC---
Confidence 1 12344 111233 688999999999864 7888 8777765521 125667763
Q ss_pred CCCccEEeeec--CCCCCCCCcccCC
Q 047080 141 ESGFDFYSRFF--CPKFGVNEVITRW 164 (165)
Q Consensus 141 ~~~~~~~~R~F--aP~~Gi~EDpaTg 164 (165)
+.++++|+| +|..|++| ||||
T Consensus 217 --~~~~~~R~fv~~p~~Gv~E-~acG 239 (318)
T 2azp_A 217 --DPHADSRNFVLCPGKAYDR-SPCG 239 (318)
T ss_dssp --ETTEEEEEEEECTTSCBCS-SCCH
T ss_pred --CCCccEEEEEEeCCCcccc-CCCH
Confidence 357999999 99999999 9998
No 11
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=99.34 E-value=1.3e-11 Score=100.52 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=85.2
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCccHH
Q 047080 1 MELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSEVS 80 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~~ 80 (165)
+++|||+|.++|+.|.+.+....++++|+|.+|++++++.. .+++ ... +++++..+.+.+.. ..
T Consensus 85 aemCGNg~Rc~a~~l~~~g~~~~~~~~ieT~aG~~~v~~~~----------~~~~-~~~--V~VdMg~P~~~~~~--~~- 148 (290)
T 3fve_A 85 AQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHH----------VEAA-YAD--VSVDMGKANRLGAG--EA- 148 (290)
T ss_dssp CCTTCTTHHHHHHHHHHTTSCCCSEEEEECTTCCEEEEEEE----------ECSS-EEE--EEEECCCCEEEEEE--EB-
T ss_pred cccccchHHHHHHHHHHhCCCCCceEEEEeCCeEEEEEEEc----------CCCc-eeE--EEEECCCceeCCCc--eE-
Confidence 47999999999999999876656789999999999999873 1110 013 44554333322211 00
Q ss_pred HHHHHhCCCceeeEEEeCCCceEEEEcCChh--hhcc--cC--CChHHHhcCCCCcceEEEecCCCCCCccEEeeecCCC
Q 047080 81 LILKALGVSSVVDMKITTTCEDIFVVLPSAK--SVAD--LQ--PKFDEMKKCPGRRGIIVSGLAPPESGFDFYSRFFCPK 154 (165)
Q Consensus 81 ~l~~algl~~~~~i~~~tg~~~lvv~l~~~~--~L~~--l~--pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~FaP~ 154 (165)
.+ . +... .-..+++|+|++++.+++.+ .|.. +- |.++. .+.. .|+.|....-. ...++++|+|-+
T Consensus 149 ~~-~--~~~~-~~~~vs~GnPH~V~~v~d~~~~~~~~~~~g~~p~~~~--~~fP-~g~NV~fv~v~-~~~~i~~Rv~ER- 219 (290)
T 3fve_A 149 VV-G--GRRF-HGLAVDVGNPHLACVDSQLTVDGLAALDVGAPVSFDG--AQFP-DGVNVEVLTAP-VDGAVWMRVHER- 219 (290)
T ss_dssp C--------C-EEEEEESSSEEEEEEETTCCTTTTCSCCCC--CCBCT--TTCT-TCCEEEEEECC-BTTEEEEEEEBT-
T ss_pred Ee-c--Ccee-eEEEEECCCCeEEEEecCCcccccchhhcccccccCc--ccCC-CCeEEEEEEEc-CCCeEEEEEEeC-
Confidence 00 1 1111 11237999999999999876 4533 32 55532 2222 25554222211 246799999987
Q ss_pred CCCCCcccCC
Q 047080 155 FGVNEVITRW 164 (165)
Q Consensus 155 ~Gi~EDpaTg 164 (165)
|+.|++|||
T Consensus 220 -GvgeTlaCG 228 (290)
T 3fve_A 220 -GVGETRSCG 228 (290)
T ss_dssp -TTBSCSCCH
T ss_pred -CCccCcCcc
Confidence 678999998
No 12
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=99.27 E-value=1.6e-12 Score=110.49 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=83.3
Q ss_pred CCCCChHHHHHHHHHHhcCC--CC----CCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEe-CCCCCC-C
Q 047080 1 MELCGHATLAAAHTLFSTDL--VN----SNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELD-FPAAPT-A 72 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~--~~----~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~P~~~~-~ 72 (165)
+|||||+|+|++++|.+.+. .. .+++++||++|++++++.. .+|..-....++|. .|.... .
T Consensus 127 ~~mCGHgTi~~a~~L~e~Gl~~v~~~~~~~~i~lET~aGlV~v~v~~----------~dg~~~~v~~V~v~~~P~f~~~~ 196 (414)
T 1w61_A 127 LNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLDTPAGLVRGTAHL----------QSGTESEVSNASIINVPSFLYQQ 196 (414)
T ss_dssp CSCCHHHHHHHHHHHHHTTSSCCCTTCSEEEEEEEETTEEEEEEEEE----------CTTCSSCEEEEEEECSCBEEEEE
T ss_pred hhcCcCcHHHHHHHHHHcCCcccCCCCCCceEEEEcCCeEEEEEEEe----------CCCccceEEEEEEeeeecccccc
Confidence 58999999999999999876 54 3579999999999999862 12100011135554 443211 1
Q ss_pred CCCCccHHHHHHH-hCCCceeeEEEeCCCceEEEEcCChhhhcccCC-ChHHHhcCCC-------------------Ccc
Q 047080 73 DLNFSEVSLILKA-LGVSSVVDMKITTTCEDIFVVLPSAKSVADLQP-KFDEMKKCPG-------------------RRG 131 (165)
Q Consensus 73 ~~~~~~~~~l~~a-lgl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~p-d~~~l~~~~~-------------------~~g 131 (165)
.++. . ... +| ....++ ..+|.+|++|++.+... .+.+ |...|.++.. ..+
T Consensus 197 ~i~v----~-~~~~lg-~~~~~i-~~gG~~~~iV~~~s~g~--~v~~~~~~~L~~~g~~i~~a~~~~~~~~Hp~fp~~~n 267 (414)
T 1w61_A 197 DVVV----V-LPKPYG-EVRVDI-AFGGNFFAIVPAEQLGI--DISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINT 267 (414)
T ss_dssp EEEE----E-CCTTTC-EEEEEE-EESSSEEEEEEGGGGTC--CSSSTTHHHHHHHHHHHHHHHHHHCCCCCSSCTTCCS
T ss_pred cCce----e-ccccCC-ceeeEE-EECCeEEEEEEEEEccc--ccCcccHHHHHHHHHHHHHHHHhhccccCccCCCccc
Confidence 1110 0 011 33 111344 46788999999976544 5666 6555554421 113
Q ss_pred ---eEEEecCCCCCCccEEeeec--CCCCCCCCcccCC
Q 047080 132 ---IIVSGLAPPESGFDFYSRFF--CPKFGVNEVITRW 164 (165)
Q Consensus 132 ---v~v~~~~~~~~~~~~~~R~F--aP~~Gi~EDpaTg 164 (165)
+.++.... ..++++|+| +|..++.|+| ||
T Consensus 268 v~~v~v~~~~~---~~~~~~R~~~v~erG~idesp-cG 301 (414)
T 1w61_A 268 VDCVEIYGPPT---NPEANYKNVVIFGNRQADRSP-CG 301 (414)
T ss_dssp EEEEEEEECCS---STTCSEEEEEEETTTEECSSC-CH
T ss_pred EEEEEEEeCCC---CCceeEEEEEEeCCCccCCCC-Ch
Confidence 33454431 234778998 5775668885 98
No 13
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3
Probab=99.25 E-value=3.1e-12 Score=106.43 Aligned_cols=140 Identities=12% Similarity=0.136 Sum_probs=74.9
Q ss_pred CCCCChHHHHHHHHHHhcCCCC----CCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEe-CCCCCC-CCC
Q 047080 1 MELCGHATLAAAHTLFSTDLVN----SNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELD-FPAAPT-ADL 74 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~~~~~~----~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~P~~~~-~~~ 74 (165)
+|||||+|++++++|.+.+... .+++++||++|++++++.. .+| ....++|. .|.... ..+
T Consensus 87 ~~mCGhgt~~~a~~l~e~Glv~~~~~~~~~~ieT~aG~v~v~v~~----------~~g---~v~~v~~~~~P~f~~~~~i 153 (350)
T 1tm0_A 87 PPMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEAPGGIIEVEAEC----------RNG---KAERISVRNVPSFADRLDA 153 (350)
T ss_dssp CSCCHHHHHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEEE----------CSS---SEEEEEEECCCBEECCCSE
T ss_pred cccccchHHHHHHHHHHcCCCCCCCCCcEEEEECCCeEEEEEEEe----------CCC---cEEEEEEeccccccccccC
Confidence 5899999999999999888654 3579999999999999852 222 11136664 343211 111
Q ss_pred CCccHHHHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccCC-ChHHHhcCCC---------------------Ccce
Q 047080 75 NFSEVSLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQP-KFDEMKKCPG---------------------RRGI 132 (165)
Q Consensus 75 ~~~~~~~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~p-d~~~l~~~~~---------------------~~gv 132 (165)
+. . ...+| ....++ .++|.++++|++.+... .+.+ |...|.++.. -..+
T Consensus 154 ~~-~----~~~lg-~~~~~i-~~~G~~~~iv~~~~~g~--~v~~~~~~~l~~~g~~i~~~~~~~~~~~hp~p~~~nv~~v 224 (350)
T 1tm0_A 154 PL-D----VTGLG-TIMVDT-AYGGDSFVIVDAAQIGM--KIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFC 224 (350)
T ss_dssp EE-E----CSSSS-EEEEEE-EESSSEEEEEEGGGTC-----CHHHHHHHHHHHHHHHCC------CCBTTBSCCSCCEE
T ss_pred ce-e----cCCcC-cEEEEE-EECCEEEEEEEeecccC--ccCchhHHHHHHHHHHHHHHHHhhcccCCCCcCCcceeEE
Confidence 10 0 01222 111333 56899999999975442 3444 4344433221 1134
Q ss_pred EEEecCCCCCCccEEeeec--CCCCCCCCcccCC
Q 047080 133 IVSGLAPPESGFDFYSRFF--CPKFGVNEVITRW 164 (165)
Q Consensus 133 ~v~~~~~~~~~~~~~~R~F--aP~~Gi~EDpaTg 164 (165)
.++.... ....++++|+| +|..++.|+| ||
T Consensus 225 ~~~~~~~-~~~~~~~~r~~rv~~~G~~~etp-cG 256 (350)
T 1tm0_A 225 QITEPVT-REGDVLTGVNTVAIRPAKFDRSP-TG 256 (350)
T ss_dssp EEECCCE-ESSSEEEECEEC----------C-CH
T ss_pred EEEecCC-CcccccceEEEEEeCCCCcCCCC-CH
Confidence 5555431 12237889998 5775668887 98
No 14
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=98.47 E-value=7e-08 Score=79.24 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCCCChHHHHHHHHHHh-cCCCCCCeEEEEeccceEEEEEcccccccCCCCCCCCCCcceeEEEEeCCCCCCCCCCCcc-
Q 047080 1 MELCGHATLAAAHTLFS-TDLVNSNTVEFATLSGILTAKKVPYVKTMNDSNSQNGEAQECYFIELDFPAAPTADLNFSE- 78 (165)
Q Consensus 1 vplcGHaTlAaa~~L~~-~~~~~~~~i~~et~~G~l~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~- 78 (165)
+++|||+|.+.|+.|.+ .+.....+++|+|.+|.+++++.. ++ .+.+.|..|......++...
T Consensus 96 aemCGNGtRc~A~~l~~~~g~~~~~~~~ieT~aG~l~v~~~~-----------dg----~V~VdMg~P~f~~~~iP~~~~ 160 (317)
T 3ejx_A 96 PEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQD-----------DG----QVKVDMGTPILKAQDVPTKLS 160 (317)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCCSCCBCCEEETTEEEEEEECT-----------TS----CEEEECCCCBCCGGGTTCCSC
T ss_pred eccCccHHHHHHHHHHHhcCCCCCceEEEEeCCeEEEEEEcC-----------CC----EEEEECCCCccCccccccccc
Confidence 46999999999999998 565455679999999999999973 22 55677777765544443100
Q ss_pred ----HHHHHHHhCCC--ceeeEEEeCCCceEEEEcCC-hh--hhcccCCChHHH----hcCCC-CcceEE--EecCCCCC
Q 047080 79 ----VSLILKALGVS--SVVDMKITTTCEDIFVVLPS-AK--SVADLQPKFDEM----KKCPG-RRGIIV--SGLAPPES 142 (165)
Q Consensus 79 ----~~~l~~algl~--~~~~i~~~tg~~~lvv~l~~-~~--~L~~l~pd~~~l----~~~~~-~~gv~v--~~~~~~~~ 142 (165)
...+..-+-+. ...-..+++|+|++++.+++ .+ .+.. .|...+ +.-.. ..|+.| ...- +
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~VsmGNPH~V~fvd~~~~~~dv~~--~~l~~~Gp~ie~h~~FP~g~NV~Fv~v~---~ 235 (317)
T 3ejx_A 161 GNKGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDD--LNLPEIGPKFEHHEMFPARTNTEFVEVL---S 235 (317)
T ss_dssp CSBTTBCCSEEEEETTEEEEEEEEESSSEEEEESSBTTCCCCCGGG--SCHHHHHHHHHTCTTCTTCCEEEEEEEE---E
T ss_pred cccccceeeEEEEeCCeEEEEEEEccCCCeEEEEEcCcccccCccc--cchhhhhhhhccCCcCCCCcEEEEEEEc---c
Confidence 00000000000 00112378999999998871 01 2332 233333 21110 124433 1111 2
Q ss_pred CccEEeeecCCCCCCCCcccCC
Q 047080 143 GFDFYSRFFCPKFGVNEVITRW 164 (165)
Q Consensus 143 ~~~~~~R~FaP~~Gi~EDpaTg 164 (165)
...++.|.|== |+.|=-+||
T Consensus 236 ~~~i~~Rv~ER--GvGeTlACG 255 (317)
T 3ejx_A 236 RSHLKMRVWER--GAGATLACG 255 (317)
T ss_dssp TTEEEEEEEBT--TTBSCSCCH
T ss_pred CCEEEEEEEEC--CCCcccCch
Confidence 35699999843 445666666
No 15
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconi binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A
Probab=75.42 E-value=3.6 Score=34.46 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCCChHHHHHHHHHHhcCCCC----C----CeEEE-Eeccc-eEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVN----S----NTVEF-ATLSG-ILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~----~----~~i~~-et~~G-~l~v~~~ 40 (165)
+.|||-|.|.+-+..+.+... . .++++ +|+.| .+.+++.
T Consensus 105 ~nCGN~s~aVgpfAIe~GLV~~~~~~~~~~t~VrI~~tntGk~I~a~v~ 153 (397)
T 2pw0_A 105 GNCGNLTAAVGAFAISNGLIDAARIPRNGVCTVRIWQANIGKTIIAHVP 153 (397)
T ss_dssp SCCTTTHHHHHHHHHHTTCSCGGGCCSSEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCcchHHHHHHHHHHCCCCCCcccCCCCcEEEEEEecCCCCEEEEEEE
Confidence 679999999999999998765 2 35777 99999 7777765
No 16
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=68.27 E-value=12 Score=30.14 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEc
Q 047080 4 CGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 4 cGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~ 40 (165)
||-+.-|++.+....+.. ..++..++..|.|.|+..
T Consensus 254 CGTGacAaavaa~~~g~~-~~~v~V~~pGG~L~I~~~ 289 (317)
T 3ejx_A 254 CGTGACALVVAAVLEGRA-DRKCTVDLPGGPLEIEWK 289 (317)
T ss_dssp CHHHHHHHHHHHHHTTSS-CSEEEEEETTEEEEEEEC
T ss_pred chHHHHHHHHHHHHhCCC-CCeEEEECCCCEEEEEEE
Confidence 999999998887776653 468999999999999986
No 17
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=67.90 E-value=10 Score=30.18 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCChHHHHHHHHHHhc-CCCCCCeEEEEeccceEEEEEc
Q 047080 3 LCGHATLAAAHTLFST-DLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 3 lcGHaTlAaa~~L~~~-~~~~~~~i~~et~~G~l~v~~~ 40 (165)
=||-+.-|++.+..+. +. ....++.++..|.|.|+.+
T Consensus 226 aCGTGacA~a~~~~~~~g~-~~~~v~v~~~GG~L~i~~~ 263 (290)
T 3fve_A 226 SCGTGTVAAAVAALAAVGS-PTGTLTVHVPGGEVVVTVT 263 (290)
T ss_dssp CCHHHHHHHHHHHHHHTTC-SSEEEEEEETTEEEEEEEC
T ss_pred CccHHHHHHHHHHHHHcCC-CCceEEEEcCCCEEEEEEe
Confidence 4999998888777654 44 3467888999999999886
No 18
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=58.78 E-value=28 Score=26.72 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCeEEEEeccceEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVNSNTVEFATLSGILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~~~~i~~et~~G~l~v~~~ 40 (165)
|=||-++-|.+.++.+.++... .+++....|.|.|+++
T Consensus 215 ~acGSg~~A~a~~~~~~g~~~~-~~~v~~~gG~l~v~~~ 252 (274)
T 2gke_A 215 QACGSGACAAVAVGIMQGLLNN-NVQVDLPGGSLMIEWN 252 (274)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCS-EEEEEETTEEEEEEEC
T ss_pred CCchHHHHHHHHHHHHhCCCCC-cEEEEcCCCEEEEEEE
Confidence 4599999999988887776443 5777778999999886
No 19
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=55.24 E-value=19 Score=28.34 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCCChHHHHHHHHHHhcCCCCCC-eEEEEeccceEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVNSN-TVEFATLSGILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~~~-~i~~et~~G~l~v~~~ 40 (165)
|=||-++-|++.++.+.+....+ .++++...|.|.|++.
T Consensus 244 ~acGSg~~A~a~~~~~~g~~~~~~~~~v~~rgG~L~v~~~ 283 (308)
T 2otn_A 244 QACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWT 283 (308)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCTTCCEEEECSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCCceEEEEEE
Confidence 45999999999888877765443 6888889999988885
No 20
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=39.73 E-value=46 Score=22.33 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccC
Q 047080 80 SLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ 117 (165)
Q Consensus 80 ~~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~ 117 (165)
..+..++|-. .++.+. +..++|+|++.++|.++-
T Consensus 35 ~Kv~~~fGq~--ldL~y~--n~EllIpl~sQeDLDkaI 68 (103)
T 2cu1_A 35 SKAKIAFGQS--MDLHYT--NNELVIPLTTQDDLDKAV 68 (103)
T ss_dssp HHHHHHHSSC--EEEEEC--SSSSCEECCSHHHHHHHH
T ss_pred HHHHHHhCCe--eeEEEe--cceEEEeccCHHHHHHHH
Confidence 3567899954 666543 678999999999998764
No 21
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=36.27 E-value=73 Score=20.90 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHHhCCCceeeEEEeCCCceEEEEcCChhhhcccC
Q 047080 80 SLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADLQ 117 (165)
Q Consensus 80 ~~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l~ 117 (165)
..+..++|-. .++.+. +.-++|||++.++|+++.
T Consensus 31 qkv~~afGq~--ldl~y~--nnEL~iPL~~Q~DLDkAv 64 (94)
T 2jrh_A 31 HKVTTVFGQP--LDLHYM--NNELSILLKNQDDLDKAI 64 (94)
T ss_dssp HHHHHHHCSS--EEEEEE--CSSCEEECCSHHHHHHHH
T ss_pred HHHHHHhCCe--eeeEEe--cceeEEeccCHHHHHHHH
Confidence 4567899954 566554 567999999999988653
No 22
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=34.46 E-value=69 Score=21.59 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=24.9
Q ss_pred HHHHHHhCCCceeeEEEeCCCceEEEEcCChhhhccc
Q 047080 80 SLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADL 116 (165)
Q Consensus 80 ~~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l 116 (165)
..+..++|-. .++.+. +..++|||+++++|.++
T Consensus 58 qkv~~afGq~--ldl~y~--nnEL~IPL~~Q~DLDkA 90 (111)
T 2c60_A 58 HKVTTVFGQP--LDLHYM--NNELSILLKNQDDLDKA 90 (111)
T ss_dssp HHHHHHHSSC--CEEEEE--CSSCEEECCSHHHHHHH
T ss_pred HHHHHHhCCe--eeeEEe--cceEEEecccHHHHHHH
Confidence 4567899955 566554 56799999999998865
No 23
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=34.05 E-value=83 Score=20.88 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.8
Q ss_pred HHHHHHhCCCceeeEEEeCCCceEEEEcCChhhhccc
Q 047080 80 SLILKALGVSSVVDMKITTTCEDIFVVLPSAKSVADL 116 (165)
Q Consensus 80 ~~l~~algl~~~~~i~~~tg~~~lvv~l~~~~~L~~l 116 (165)
..+..++|-. .++.+. +.-++|||+++++|.++
T Consensus 47 ~kv~~afGq~--ldl~y~--nnEL~iPL~~Q~DLDkA 79 (100)
T 2npt_B 47 SKAKIAFGQS--MDLHYT--NNELVIPLTTQDDLDKA 79 (100)
T ss_dssp HHHHHHHTSC--EEEEEE--ETTEEEECCCHHHHHHH
T ss_pred HHHHHHhCCe--eeeEEe--cceeEEecccHHHHHHH
Confidence 3567899954 566554 46799999999998865
No 24
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=32.78 E-value=70 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=29.2
Q ss_pred CCCChHHHHHHHHHHhcCCC-CCCeEEEEe-----ccceEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLV-NSNTVEFAT-----LSGILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~-~~~~i~~et-----~~G~l~v~~~ 40 (165)
|-||-+.-|.+..+.+.+.. ...++..+. ..|.|.|+.+
T Consensus 229 patGSaa~Ala~~l~~~g~~~~~~~~~v~QG~~~~rgG~L~v~~~ 273 (298)
T 1xub_A 229 AATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAE 273 (298)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCTTCCEEEEECGGGTCCEEEEEEEE
T ss_pred chhhHHHHHHHHHHHHcCCCCCCCEEEEEcccccCCCEEEEEEEE
Confidence 45999998988888887654 333677765 6888988885
No 25
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=30.61 E-value=17 Score=24.95 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHHh
Q 047080 4 CGHATLAAAHTLFS 17 (165)
Q Consensus 4 cGHaTlAaa~~L~~ 17 (165)
||||++++.+.+.+
T Consensus 28 ~~HAa~~~~~~~~~ 41 (121)
T 1wn2_A 28 VAHGAVTAAFEAYK 41 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999877654
No 26
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=30.41 E-value=17 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHHh
Q 047080 4 CGHATLAAAHTLFS 17 (165)
Q Consensus 4 cGHaTlAaa~~L~~ 17 (165)
||||++++.+.+..
T Consensus 23 ~~HAa~~~~~~~~~ 36 (120)
T 1xty_A 23 VAHAAVTLVVSIIN 36 (120)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999877754
No 27
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=29.46 E-value=88 Score=24.06 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHHHhcCCCC-CCeEEEEe-----ccceEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVN-SNTVEFAT-----LSGILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~-~~~i~~et-----~~G~l~v~~~ 40 (165)
|=||-++-|.+.++.+.+... ..++..+. ..|.|.+++.
T Consensus 219 ~acGSga~ala~~~~~~g~~~~~~~~~v~Qg~~~~rgg~l~v~~~ 263 (288)
T 1u0k_A 219 VATGSAAGPVAAYLVEYGLAARGEPFVLHQGRFLERPSRLDVQVA 263 (288)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCTTSCEEEEECGGGTCCEEEEEEEC
T ss_pred ccchHHHHHHHHHHHHcCCCCCCcEEEEECCCeeCCCcEEEEEEE
Confidence 469999999988888877544 23677765 5688888885
No 28
>4ayb_G DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_G 2y0s_G 2waq_G 4b1o_G 4b1p_V 3hkz_G
Probab=29.34 E-value=5 Score=28.38 Aligned_cols=8 Identities=38% Similarity=1.257 Sum_probs=5.6
Q ss_pred CCCChHHH
Q 047080 2 ELCGHATL 9 (165)
Q Consensus 2 plcGHaTl 9 (165)
+||||+.+
T Consensus 70 dFCGhGYv 77 (132)
T 4ayb_G 70 DFCGHGYI 77 (132)
T ss_dssp SEEBCEEE
T ss_pred ccccceEE
Confidence 47888754
No 29
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=29.32 E-value=19 Score=24.48 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=11.6
Q ss_pred CCChHHHHHHHHHHh
Q 047080 3 LCGHATLAAAHTLFS 17 (165)
Q Consensus 3 lcGHaTlAaa~~L~~ 17 (165)
-||||++++...+.+
T Consensus 21 Q~~HAa~~~~~~~~~ 35 (115)
T 2zv3_A 21 QGGHAIIEAFLDAKR 35 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 389999999766644
No 30
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=28.01 E-value=18 Score=24.65 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=11.3
Q ss_pred CChHHHHHHHHHH
Q 047080 4 CGHATLAAAHTLF 16 (165)
Q Consensus 4 cGHaTlAaa~~L~ 16 (165)
||||++++.+.+.
T Consensus 24 ~~HAa~~~~~~~~ 36 (117)
T 1q7s_A 24 CSHAAVSAYKQIQ 36 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988774
No 31
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=27.70 E-value=19 Score=24.53 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHh
Q 047080 4 CGHATLAAAHTLFS 17 (165)
Q Consensus 4 cGHaTlAaa~~L~~ 17 (165)
||||++++...+.+
T Consensus 24 ~~HAa~~~~~~~~~ 37 (117)
T 1rlk_A 24 VAHAAVTCAIRSMK 37 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999766643
No 32
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=26.82 E-value=88 Score=24.28 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=28.9
Q ss_pred CCCChHHHHHHHHHHhcCCCC--C--CeEEEEe-----ccceEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVN--S--NTVEFAT-----LSGILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~--~--~~i~~et-----~~G~l~v~~~ 40 (165)
|-||-+.-|.+..+.+.+... . .++..+. ..|.|.|+.+
T Consensus 233 pacGSaa~ala~~~~~~g~~~~~~~~~~~~v~Qg~~~~rgG~l~v~~~ 280 (307)
T 1qya_A 233 PVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVT 280 (307)
T ss_dssp SSCHHHHHHHHHHHHHTTCSCCCSSEEEEEEEECGGGTCCEEEEEEEE
T ss_pred CCcccchHHHHHHHHHcCccCcCCCcceEEEEcccccCCCeEEEEEEE
Confidence 459999999988888876654 2 2577775 5788888875
No 33
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri}
Probab=23.74 E-value=1.1e+02 Score=25.41 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHHHhcCCCC----CCeEEEE-eccc-eEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVN----SNTVEFA-TLSG-ILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~----~~~i~~e-t~~G-~l~v~~~ 40 (165)
+-|||-+.|.+-...+.+... ..++++. |+.| .+.+++.
T Consensus 94 ~nCGN~~aaVgpfAie~GLV~~~~~~t~VRI~n~Ntgk~i~a~v~ 138 (391)
T 3g7k_A 94 GNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYAEVE 138 (391)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCCSSEEEEEEEETTTCCEEEEEEE
T ss_pred CCccchHHHHHHHHHHCCCccCCCCcEEEEEEecCCCCEEEEEEE
Confidence 579999999998888887654 2356766 6887 5555554
No 34
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=20.03 E-value=97 Score=24.02 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHHHHhcCCCCC-CeEEEE-----eccceEEEEEc
Q 047080 2 ELCGHATLAAAHTLFSTDLVNS-NTVEFA-----TLSGILTAKKV 40 (165)
Q Consensus 2 plcGHaTlAaa~~L~~~~~~~~-~~i~~e-----t~~G~l~v~~~ 40 (165)
|-||-+.-|.+..+.+.+.... ..++++ ...|.|.|+.+
T Consensus 225 patGSaa~ala~~~~~~~~~~~~~~~~v~QG~~~~rgG~L~v~~~ 269 (300)
T 1ym5_A 225 PVCGSGSVALARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIK 269 (300)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSCEEEEEEECGGGTCCEEEEEEEE
T ss_pred CcchHHHHHHHHHHHHhCCCCCceEEEEEcccccCCCeEEEEEEE
Confidence 4588888888877776654332 368888 88899988885
Done!