BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047081
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
A Small Segment Of Adjacent Coiled-Coil Region
pdb|4E8U|C Chain C, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
A Small Segment Of Adjacent Coiled-Coil Region
Length = 172
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 127/166 (76%)
Query: 112 DGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCA 171
D K V+PW GIVVNIPT + QDGRS GESGSKL+DE I RG +PTRV+ LWN+ GHSG A
Sbjct: 6 DEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTA 65
Query: 172 LVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEH 231
+V+FNK+W GL N + F+K++ D HGKKDW + K GLYGW+AR+DD++ NNIIGE+
Sbjct: 66 IVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGEN 125
Query: 232 LRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERC 277
LRK DLKTI+ L EEEARK+ LLV NL +E K K ++E++E C
Sbjct: 126 LRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEELC 171
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 32 YNVKISDETFTCPYCPKKRKHDYLY 56
Y VK+ D TFT P+C + +++DY++
Sbjct: 240 YTVKVEDLTFTSPFCLQVKRNDYVH 264
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 32 YNVKISDETFTCPYCPKKRKHDYLY 56
Y VK+ D TFT P+C + +++DY++
Sbjct: 230 YTVKVEDLTFTSPFCLQVKRNDYVH 254
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 32 YNVKISDETFTCPYCPKKRKHDYLY 56
Y VK+ D TFT P+C + +++DY++
Sbjct: 227 YTVKVEDLTFTSPFCLQVKRNDYVH 251
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 32 YNVKISDETFTCPYCPKKRKHDYLY 56
Y VK+ D TFT P+C + +++DY++
Sbjct: 236 YTVKVEDLTFTSPFCLQVKRNDYVH 260
>pdb|3V47|C Chain C, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|D Chain D, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 425
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 267 NKHLEEMKERCIETSNFI---ENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENF 323
N +L+ ++E ++ +N +L +D + Q EEI ++ Q++ ++ ++
Sbjct: 45 NNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRL-EEIDRVSNQTQFNGVKVLSQDNQM 103
Query: 324 KLQLEAQKKELEFLGVDLQKREAK 347
K+Q+ A + E + +DLQK + K
Sbjct: 104 KIQVGAN--DGETITIDLQKIDVK 125
>pdb|3RTY|A Chain A, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|B Chain B, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|C Chain C, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|D Chain D, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|E Chain E, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|F Chain F, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|G Chain G, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|H Chain H, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
Length = 339
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 245 VEEEARKKNL-----LVSNLTNTIEVKNKHL-EEMKERCIETSNFIENLMEEKDR 293
+ EEA+ +N +V L T+ ++ + +E+ RC ++F+E LM+E R
Sbjct: 280 ISEEAQSRNTRIKEDIVKRLAETVSRPSETVKQEVSRRCQALASFMETLMDEVSR 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,435,893
Number of Sequences: 62578
Number of extensions: 521171
Number of successful extensions: 1378
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1324
Number of HSP's gapped (non-prelim): 92
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)