BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047081
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa
subsp. japonica GN=SGS3 PE=2 SV=1
Length = 609
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 146/352 (41%), Gaps = 31/352 (8%)
Query: 19 YEDRSYEKLKSGNYNV-------KISDET--FTCPYCPKKRKHDYLYK---DLLQHASGI 66
+E R KL G + V ++++ T + CP C YK L+ HA
Sbjct: 174 FETRKNHKLFKGFFEVLEALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTK 233
Query: 67 GN-SSKRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVCSDGKFVWPWIGIVVN 125
G+ KR + + T + G Q + G L +D + VWP + +V+N
Sbjct: 234 GSIKVKRHRELASLLEEELSRRGTSVVPSGEQFRKWKG---LRESTDREIVWPPMVVVMN 290
Query: 126 IPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNA 185
+ +D + G +L D ++ + + GH G +++ F+ + G A
Sbjct: 291 TVLEQDEDDKWKGMGNQELIDYFSEYAA--SKARHAYGPNGHRGMSVLIFDSSAVGYMEA 348
Query: 186 MAFEKSFEADHHGKKDWNDGNQV------KSGLYGWVARSDD-HSLNNIIGEHLRKNRDL 238
F + WN ++V K LYG++A DD + N R ++
Sbjct: 349 ERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEM 408
Query: 239 KTISGLVEEEARKK---NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLV 295
++ + +V + ++ N ++ L N + K +H + +++ + + MEE + +V
Sbjct: 409 RSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEE-NTIV 467
Query: 296 QGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAK 347
+ +E K ++ + +Q F + K+ ++KE++F + LQ+ AK
Sbjct: 468 RNKAKE-KHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKL-LQEERAK 517
>sp|P41954|YLK6_CAEEL Uncharacterized protein D1044.6 OS=Caenorhabditis elegans
GN=D1044.6 PE=4 SV=3
Length = 1006
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 319 EHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKN---AMRNSSLQLATLE 375
EH N +++ E +KELEF L+KRE + E +K EE+ + A+ S+ + A +
Sbjct: 360 EH-NLRIEKERHQKELEFRREALRKREQEREEHKKRAQEELRRQMTAALEESTRRQAEMN 418
Query: 376 QQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQ-----------ALELEIERLRGT 424
+Q +D RK E Q+I +E+ ++ LE Q AKQ + L I RL GT
Sbjct: 419 RQ-IEDEARKRDELQRIAEEKKRKQL--LEDQCRAKQEKEKRDAEELEQMRLNIARLAGT 475
Query: 425 SKCDEA 430
+ A
Sbjct: 476 KDVENA 481
>sp|A2ZIW7|SGS3_ORYSI Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa
subsp. indica GN=SGS3 PE=3 SV=1
Length = 609
Score = 38.9 bits (89), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 70/341 (20%), Positives = 140/341 (41%), Gaps = 30/341 (8%)
Query: 19 YEDRSYEKLKSGNYNV-------KISDET--FTCPYCPKKRKHDYLYK---DLLQHASGI 66
+E R KL G + V ++++ T + CP C YK L+ HA
Sbjct: 174 FETRKNHKLFKGFFEVLDALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTK 233
Query: 67 GN-SSKRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVCSDGKFVWPWIGIVVN 125
G+ KR + + T + G Q + G L +D + VWP + +V+N
Sbjct: 234 GSIKVKRHRELASLLEEELSRRGTSVVPSGEQFRKWKG---LREGTDREIVWPPMVVVMN 290
Query: 126 IPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNA 185
+ +D + G +L D ++ + + GH G +++ F+ + G A
Sbjct: 291 TVLEQDEDDKWKGMGNQELIDYFSEYAA--SKARHAYGPNGHRGMSVLIFDSSAVGYMEA 348
Query: 186 MAFEKSFEADHHGKKDWNDGNQV------KSGLYGWVARSDD-HSLNNIIGEHLRKNRDL 238
F + WN ++V K LYG++A DD + N R ++
Sbjct: 349 ERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEM 408
Query: 239 KTISGLVEEEARKK---NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLV 295
++ + +V + ++ N ++ L N + K +H + +++ + + MEE + +V
Sbjct: 409 RSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEE-NTIV 467
Query: 296 QGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEF 336
+ +E K ++ + +Q F + K+ ++KE++F
Sbjct: 468 RNKAKE-KHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKF 507
>sp|O75116|ROCK2_HUMAN Rho-associated protein kinase 2 OS=Homo sapiens GN=ROCK2 PE=1 SV=4
Length = 1388
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 97/189 (51%), Gaps = 26/189 (13%)
Query: 224 LNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNL------TNTIEVKNKHLEEMKERC 277
+N ++ + N D++ ++ +E+E +K+ L ++L NT+++ K L++
Sbjct: 775 INELLKQKDVLNEDVRNLTLKIEQETQKRCLTQNDLKMQTQQVNTLKMSEKQLKQENNHL 834
Query: 278 IETSNFIENLMEEKDRLVQGYNEEIKKIQ--LSAQYHFQRIF-TEHENFKLQLEAQKKEL 334
+E +E E + Q + ++K++Q L A+ +F ++ T+ K + E + K
Sbjct: 835 MEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEKTK-- 892
Query: 335 EFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQ--KI 392
LG +LQ+++ + +++R +LA ++E + S QLA R +AE+Q +
Sbjct: 893 --LGKELQQKKQELQDERDSLAAQLEITLTKADSEQLA-----------RSIAEEQYSDL 939
Query: 393 EKEELHNKI 401
EKE++ ++
Sbjct: 940 EKEKIMKEL 948
>sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3
Length = 2116
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 324 KLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDN- 382
++++E KK+LE L +R A E KA EEI K + A L+ ++A N
Sbjct: 1612 RIKIEKSKKKLE---QTLAERRAAEEGSSKAADEEIRKQVWQEVDELRAQLDSERAALNA 1668
Query: 383 ----VRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLR 422
++ L + KE+L ++I+ +K + AK+ALE+E+E +R
Sbjct: 1669 SEKKIKSLVAEVDEVKEQLEDEILAKDKLVKAKRALEVELEEVR 1712
>sp|Q8BMK0|CEP85_MOUSE Centrosomal protein of 85 kDa OS=Mus musculus GN=Cep85 PE=2 SV=2
Length = 761
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 23/177 (12%)
Query: 263 IEVKNKHLEEMKERC-------------IET-SNFIENLMEEKDRLVQGYNEEIKKIQLS 308
++ ++KH+ +K++C IET ++ +L +D Q E++K +L
Sbjct: 447 VKGRDKHINNLKKKCQKESEQNREKQQRIETLERYLADLPTLEDH--QKQTEQLKDAELK 504
Query: 309 AQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSS 368
Q E E +A +E E L++REA + R + ++ +
Sbjct: 505 -NTELQERVAELETLLEDTQATCREKEVQLESLRQREADLSSARHSFQDKQSVEEANGEN 563
Query: 369 LQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAK-----QALELEIER 420
L++ QQK D++RK+ E Q+++ E+LH++ +Q +KQ A+ QAL E +R
Sbjct: 564 LRVDMESQQKECDSLRKMVERQQLKMEQLHSQ-VQSQKQELAQEEGINQALREEAQR 619
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,404,074
Number of Sequences: 539616
Number of extensions: 7142705
Number of successful extensions: 31974
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 1923
Number of HSP's that attempted gapping in prelim test: 27181
Number of HSP's gapped (non-prelim): 5439
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)