Query 047081
Match_columns 432
No_of_seqs 136 out of 155
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03468 XS: XS domain; Inter 100.0 7.2E-48 1.6E-52 335.8 5.3 116 111-228 1-116 (116)
2 PF03470 zf-XS: XS zinc finger 99.7 3.9E-18 8.5E-23 124.0 3.0 42 43-84 1-43 (43)
3 PF08317 Spc7: Spc7 kinetochor 94.6 2.2 4.8E-05 43.5 17.1 138 254-426 145-286 (325)
4 PRK11637 AmiB activator; Provi 94.6 7.3 0.00016 41.1 23.4 49 313-361 168-216 (428)
5 PF07888 CALCOCO1: Calcium bin 94.3 4.5 9.8E-05 44.5 19.4 16 394-409 285-300 (546)
6 KOG0161 Myosin class II heavy 94.2 8 0.00017 48.4 23.0 95 251-345 1122-1226(1930)
7 KOG4643 Uncharacterized coiled 93.9 9 0.00019 44.9 21.3 171 241-411 279-500 (1195)
8 PRK11637 AmiB activator; Provi 93.7 11 0.00024 39.8 23.1 31 315-345 163-193 (428)
9 PF15066 CAGE1: Cancer-associa 93.5 4.8 0.0001 43.4 17.3 111 251-361 387-521 (527)
10 PF07888 CALCOCO1: Calcium bin 93.5 15 0.00032 40.6 23.2 68 233-300 150-217 (546)
11 KOG0996 Structural maintenance 93.5 10 0.00022 45.0 21.0 173 253-428 250-459 (1293)
12 KOG0161 Myosin class II heavy 93.1 22 0.00047 44.7 24.2 163 211-375 782-975 (1930)
13 KOG0996 Structural maintenance 92.5 26 0.00057 41.8 22.5 110 252-361 375-490 (1293)
14 PF05483 SCP-1: Synaptonemal c 92.5 23 0.00049 40.2 21.8 133 275-407 485-630 (786)
15 KOG0612 Rho-associated, coiled 91.9 29 0.00063 41.6 22.0 87 273-360 492-581 (1317)
16 KOG0982 Centrosomal protein Nu 91.7 22 0.00047 38.3 19.5 175 240-419 204-394 (502)
17 KOG0933 Structural maintenance 91.6 34 0.00075 40.4 22.4 29 401-429 891-919 (1174)
18 PF10174 Cast: RIM-binding pro 91.5 20 0.00044 41.2 20.2 88 256-343 401-497 (775)
19 KOG0579 Ste20-like serine/thre 91.1 25 0.00055 40.1 19.5 153 230-393 789-950 (1187)
20 TIGR02169 SMC_prok_A chromosom 90.5 40 0.00086 39.2 24.6 22 133-156 113-134 (1164)
21 PF05605 zf-Di19: Drought indu 90.4 0.16 3.4E-06 38.5 1.6 24 39-66 1-24 (54)
22 PF09726 Macoilin: Transmembra 90.0 40 0.00086 38.4 21.5 45 259-303 458-502 (697)
23 PF00076 RRM_1: RNA recognitio 88.5 1.4 3E-05 33.0 5.6 55 121-187 1-57 (70)
24 PF05010 TACC: Transforming ac 88.2 26 0.00057 34.1 19.7 127 240-370 52-181 (207)
25 TIGR03319 YmdA_YtgF conserved 87.8 47 0.001 36.4 23.2 95 320-423 99-197 (514)
26 KOG4572 Predicted DNA-binding 87.4 63 0.0014 37.7 19.4 160 259-425 920-1108(1424)
27 PF13851 GAS: Growth-arrest sp 86.7 29 0.00064 33.3 14.7 88 251-345 83-170 (201)
28 KOG1853 LIS1-interacting prote 86.2 41 0.00088 34.1 19.6 41 384-424 132-172 (333)
29 KOG4674 Uncharacterized conser 86.1 96 0.0021 39.1 21.5 165 256-425 1245-1424(1822)
30 KOG0994 Extracellular matrix g 86.1 89 0.0019 37.8 21.1 61 227-287 1479-1544(1758)
31 KOG0250 DNA repair protein RAD 85.9 85 0.0018 37.4 22.2 31 382-412 426-456 (1074)
32 PF14259 RRM_6: RNA recognitio 85.6 1.2 2.6E-05 34.0 3.9 58 121-190 1-60 (70)
33 TIGR02169 SMC_prok_A chromosom 85.5 79 0.0017 36.8 24.9 9 41-49 25-33 (1164)
34 PF12128 DUF3584: Protein of u 85.3 95 0.0021 37.5 24.3 30 257-286 355-384 (1201)
35 KOG0995 Centromere-associated 84.1 75 0.0016 35.4 19.7 49 228-279 205-253 (581)
36 PTZ00121 MAEBL; Provisional 83.5 1.3E+02 0.0027 37.5 20.1 55 289-343 1573-1627(2084)
37 KOG0978 E3 ubiquitin ligase in 83.1 92 0.002 35.6 23.7 100 325-431 513-623 (698)
38 KOG0239 Kinesin (KAR3 subfamil 82.3 95 0.0021 35.3 18.3 42 256-297 177-218 (670)
39 PF15272 BBP1_C: Spindle pole 82.0 51 0.0011 31.9 18.8 133 248-409 13-149 (196)
40 PF09726 Macoilin: Transmembra 81.7 1E+02 0.0022 35.2 21.3 33 383-425 620-652 (697)
41 KOG0995 Centromere-associated 81.5 95 0.0021 34.6 17.5 95 256-361 448-546 (581)
42 PRK12704 phosphodiesterase; Pr 81.2 92 0.002 34.3 23.4 54 370-423 146-203 (520)
43 PRK00106 hypothetical protein; 80.8 98 0.0021 34.3 23.3 54 370-423 161-218 (535)
44 COG1196 Smc Chromosome segrega 80.7 1.4E+02 0.003 36.0 23.5 22 133-156 115-136 (1163)
45 KOG0804 Cytoplasmic Zn-finger 80.1 59 0.0013 35.3 14.8 31 385-415 421-458 (493)
46 PF12128 DUF3584: Protein of u 79.8 1.5E+02 0.0032 35.9 21.8 19 137-155 119-137 (1201)
47 PF15619 Lebercilin: Ciliary p 79.7 60 0.0013 31.2 18.5 70 289-359 57-127 (194)
48 KOG2412 Nuclear-export-signal 79.5 89 0.0019 34.7 16.2 50 312-361 198-247 (591)
49 PRK00409 recombination and DNA 79.5 43 0.00094 38.5 14.7 12 146-157 351-363 (782)
50 KOG0979 Structural maintenance 79.5 1.4E+02 0.0031 35.5 21.4 63 226-293 150-213 (1072)
51 KOG0163 Myosin class VI heavy 78.7 1.4E+02 0.003 34.8 19.0 25 306-330 891-915 (1259)
52 smart00362 RRM_2 RNA recogniti 78.5 5.8 0.00013 28.7 5.2 47 121-178 2-49 (72)
53 KOG0980 Actin-binding protein 77.8 1.5E+02 0.0033 34.8 18.7 25 16-40 161-185 (980)
54 PF15619 Lebercilin: Ciliary p 77.0 72 0.0016 30.6 20.0 12 414-425 176-187 (194)
55 KOG0163 Myosin class VI heavy 76.5 1.2E+02 0.0026 35.4 16.4 10 211-220 822-831 (1259)
56 KOG1853 LIS1-interacting prote 75.9 72 0.0016 32.4 13.2 104 292-409 19-122 (333)
57 smart00030 CLb CLUSTERIN Beta 74.7 22 0.00047 34.6 9.0 35 380-414 45-79 (206)
58 KOG0250 DNA repair protein RAD 73.4 2.1E+02 0.0046 34.3 20.9 31 138-169 602-632 (1074)
59 PRK00409 recombination and DNA 73.4 1E+02 0.0022 35.6 15.6 68 243-310 509-576 (782)
60 smart00787 Spc7 Spc7 kinetocho 73.2 1.2E+02 0.0025 31.3 19.0 36 390-425 244-280 (312)
61 COG1196 Smc Chromosome segrega 72.9 2.2E+02 0.0047 34.3 24.3 37 159-202 102-138 (1163)
62 PF05667 DUF812: Protein of un 70.9 1.8E+02 0.004 32.6 23.5 43 251-293 332-374 (594)
63 PHA02540 61 DNA primase; Provi 70.5 0.85 1.9E-05 47.2 -1.6 124 40-187 27-161 (337)
64 TIGR02168 SMC_prok_B chromosom 70.3 2.1E+02 0.0047 33.1 25.0 16 140-155 120-135 (1179)
65 PF05911 DUF869: Plant protein 70.3 2.2E+02 0.0047 33.1 17.7 95 244-342 75-172 (769)
66 KOG1937 Uncharacterized conser 70.2 1.7E+02 0.0037 32.0 19.8 46 301-346 346-399 (521)
67 PF08702 Fib_alpha: Fibrinogen 68.9 95 0.0021 28.5 13.3 62 253-314 56-118 (146)
68 TIGR00606 rad50 rad50. This fa 68.7 2.8E+02 0.0061 33.8 23.7 25 38-62 675-699 (1311)
69 PF10186 Atg14: UV radiation r 68.4 1.2E+02 0.0026 29.5 17.1 16 396-411 130-145 (302)
70 PF13894 zf-C2H2_4: C2H2-type 67.8 3.8 8.2E-05 24.6 1.6 20 41-63 1-20 (24)
71 PF11559 ADIP: Afadin- and alp 67.3 96 0.0021 27.9 13.5 32 315-346 70-101 (151)
72 KOG0977 Nuclear envelope prote 66.8 2.2E+02 0.0047 31.8 18.4 53 282-336 204-256 (546)
73 KOG0933 Structural maintenance 64.6 3.1E+02 0.0068 32.9 21.1 103 253-355 243-345 (1174)
74 PF07989 Microtub_assoc: Micro 64.0 16 0.00034 30.0 4.9 43 304-346 29-71 (75)
75 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.7 1.1E+02 0.0024 27.1 15.9 53 310-362 58-110 (132)
76 TIGR01069 mutS2 MutS2 family p 62.6 1.8E+02 0.0039 33.6 14.7 26 307-335 564-589 (771)
77 KOG4212 RNA-binding protein hn 62.5 14 0.0003 39.9 5.4 66 121-196 47-113 (608)
78 KOG0979 Structural maintenance 62.1 3.4E+02 0.0074 32.5 16.6 19 83-101 58-76 (1072)
79 PF10234 Cluap1: Clusterin-ass 61.5 1.9E+02 0.0041 29.3 13.8 120 233-361 114-236 (267)
80 KOG0964 Structural maintenance 61.3 3.6E+02 0.0077 32.4 18.9 116 214-345 631-754 (1200)
81 PRK12705 hypothetical protein; 61.1 2.6E+02 0.0057 30.9 20.8 74 326-401 92-166 (508)
82 PF10473 CENP-F_leu_zip: Leuci 60.8 1.4E+02 0.003 27.5 17.8 129 276-409 4-136 (140)
83 KOG1029 Endocytic adaptor prot 59.8 3.5E+02 0.0075 31.8 16.8 27 73-100 243-269 (1118)
84 KOG0977 Nuclear envelope prote 59.6 2.9E+02 0.0063 30.9 19.3 27 403-429 191-217 (546)
85 TIGR01649 hnRNP-L_PTB hnRNP-L/ 58.3 21 0.00046 38.3 6.1 72 115-196 389-463 (481)
86 KOG4360 Uncharacterized coiled 58.1 3E+02 0.0066 30.6 14.8 104 253-356 197-302 (596)
87 TIGR01661 ELAV_HUD_SF ELAV/HuD 58.0 20 0.00044 35.8 5.6 52 120-182 271-325 (352)
88 PRK04863 mukB cell division pr 57.6 4.8E+02 0.01 32.7 23.2 32 380-411 437-468 (1486)
89 COG5185 HEC1 Protein involved 57.5 3E+02 0.0066 30.4 19.4 126 242-368 252-393 (622)
90 PF00261 Tropomyosin: Tropomyo 57.4 1.9E+02 0.0042 28.1 19.8 112 251-362 33-153 (237)
91 KOG0980 Actin-binding protein 57.4 3.9E+02 0.0084 31.6 21.3 85 265-357 414-498 (980)
92 PLN03120 nucleic acid binding 57.4 21 0.00045 36.0 5.4 58 120-190 6-64 (260)
93 PRK09039 hypothetical protein; 57.2 2.4E+02 0.0053 29.2 18.6 59 241-300 48-106 (343)
94 PF08702 Fib_alpha: Fibrinogen 57.1 1.6E+02 0.0034 27.0 15.5 99 241-342 23-124 (146)
95 COG2433 Uncharacterized conser 56.1 1.1E+02 0.0024 34.5 11.0 22 314-335 432-453 (652)
96 smart00400 ZnF_CHCC zinc finge 56.0 21 0.00046 26.9 4.2 37 26-66 9-45 (55)
97 PF00096 zf-C2H2: Zinc finger, 55.6 7 0.00015 23.9 1.2 20 41-63 1-20 (23)
98 PLN03121 nucleic acid binding 55.2 25 0.00055 35.1 5.5 61 119-191 6-66 (243)
99 KOG2817 Predicted E3 ubiquitin 54.9 5.3 0.00011 42.2 0.9 10 40-49 374-383 (394)
100 cd07685 F-BAR_Fes The F-BAR (F 54.8 2.3E+02 0.0051 28.3 14.8 85 264-356 83-167 (237)
101 PHA02562 46 endonuclease subun 54.6 3E+02 0.0066 29.5 22.5 179 245-426 179-389 (562)
102 PF06637 PV-1: PV-1 protein (P 54.1 3.1E+02 0.0067 29.5 14.8 107 251-357 282-388 (442)
103 PF13863 DUF4200: Domain of un 53.1 1.5E+02 0.0032 25.5 13.1 31 380-410 62-92 (126)
104 PF10168 Nup88: Nuclear pore c 53.0 4.1E+02 0.0089 30.6 15.9 69 269-337 552-626 (717)
105 PF13465 zf-H2C2_2: Zinc-finge 52.6 7.2 0.00016 25.3 0.9 13 36-48 10-22 (26)
106 KOG1150 Predicted molecular ch 52.5 2E+02 0.0044 28.4 11.0 89 277-365 120-211 (250)
107 PF10146 zf-C4H2: Zinc finger- 52.2 2.5E+02 0.0054 27.8 13.4 25 292-316 31-55 (230)
108 KOG0976 Rho/Rac1-interacting s 52.0 4.7E+02 0.01 31.0 20.2 63 281-343 279-342 (1265)
109 KOG0533 RRM motif-containing p 51.9 24 0.00053 35.1 4.9 65 120-196 85-151 (243)
110 PF11068 YlqD: YlqD protein; 51.3 1.3E+02 0.0028 27.3 9.0 83 321-426 19-101 (131)
111 TIGR01541 tape_meas_lam_C phag 50.7 2.9E+02 0.0062 28.8 12.7 16 395-410 93-108 (332)
112 PF04810 zf-Sec23_Sec24: Sec23 49.4 11 0.00024 27.0 1.6 16 33-48 17-32 (40)
113 PRK00398 rpoP DNA-directed RNA 49.2 11 0.00023 27.6 1.5 11 39-49 20-30 (46)
114 PF13912 zf-C2H2_6: C2H2-type 49.2 9.5 0.00021 24.2 1.1 22 40-64 1-22 (27)
115 PF09727 CortBP2: Cortactin-bi 49.0 2.6E+02 0.0056 27.1 14.3 46 310-362 133-178 (192)
116 KOG0249 LAR-interacting protei 48.5 5E+02 0.011 30.3 17.1 114 216-336 62-181 (916)
117 COG1579 Zn-ribbon protein, pos 48.4 2.9E+02 0.0064 27.6 19.0 41 383-423 115-156 (239)
118 KOG0612 Rho-associated, coiled 48.3 6.1E+02 0.013 31.2 20.1 37 301-338 645-683 (1317)
119 PF03670 UPF0184: Uncharacteri 48.3 77 0.0017 26.8 6.6 48 256-303 28-75 (83)
120 smart00360 RRM RNA recognition 48.2 32 0.00069 24.5 4.0 46 138-186 7-55 (71)
121 COG1579 Zn-ribbon protein, pos 48.1 3E+02 0.0065 27.5 17.0 16 396-411 160-175 (239)
122 KOG0963 Transcription factor/C 47.8 4.7E+02 0.01 29.7 18.5 31 248-278 176-206 (629)
123 TIGR01005 eps_transp_fam exopo 47.7 4.7E+02 0.01 29.7 15.4 85 254-342 288-372 (754)
124 PRK10884 SH3 domain-containing 47.5 2.7E+02 0.0059 27.0 12.0 24 313-336 134-157 (206)
125 PF14988 DUF4515: Domain of un 47.4 2.7E+02 0.0059 26.9 22.7 148 251-407 19-178 (206)
126 PRK10698 phage shock protein P 47.4 2.8E+02 0.0061 27.0 20.2 59 253-311 16-77 (222)
127 cd00350 rubredoxin_like Rubred 47.2 8 0.00017 26.6 0.5 15 37-51 14-28 (33)
128 PF14817 HAUS5: HAUS augmin-li 47.2 2.7E+02 0.0059 31.6 12.6 82 243-324 75-162 (632)
129 PF12072 DUF3552: Domain of un 46.9 2.6E+02 0.0057 26.6 18.3 21 371-391 143-163 (201)
130 PRK12704 phosphodiesterase; Pr 46.7 4.4E+02 0.0095 29.1 16.3 14 243-256 31-44 (520)
131 COG0419 SbcC ATPase involved i 46.2 5.5E+02 0.012 30.0 24.6 35 389-423 421-455 (908)
132 COG5109 Uncharacterized conser 46.1 8.8 0.00019 39.7 0.8 16 36-51 372-387 (396)
133 KOG2072 Translation initiation 46.0 5.7E+02 0.012 30.2 19.8 44 366-409 651-694 (988)
134 KOG0976 Rho/Rac1-interacting s 45.8 5.8E+02 0.013 30.2 21.9 52 374-425 436-492 (1265)
135 PF11577 NEMO: NF-kappa-B esse 45.7 1.6E+02 0.0035 23.9 8.2 50 309-358 4-53 (68)
136 cd00590 RRM RRM (RNA recogniti 45.5 64 0.0014 23.1 5.3 54 121-186 2-57 (74)
137 PRK06569 F0F1 ATP synthase sub 45.0 2.6E+02 0.0057 26.1 14.9 19 381-399 113-131 (155)
138 PF01093 Clusterin: Clusterin; 44.7 76 0.0016 34.3 7.5 35 380-414 39-73 (436)
139 COG3064 TolA Membrane protein 44.7 2.8E+02 0.0061 29.1 11.2 34 370-403 156-189 (387)
140 PF09731 Mitofilin: Mitochondr 44.2 4.7E+02 0.01 28.7 22.0 152 259-422 249-408 (582)
141 PF05262 Borrelia_P83: Borreli 44.1 4.8E+02 0.01 28.8 14.1 112 303-422 198-309 (489)
142 TIGR03655 anti_R_Lar restricti 43.8 10 0.00023 28.6 0.7 10 42-51 3-12 (53)
143 KOG1899 LAR transmembrane tyro 43.2 5.7E+02 0.012 29.4 15.3 55 253-307 124-179 (861)
144 PF15066 CAGE1: Cancer-associa 43.1 5E+02 0.011 28.7 20.5 56 334-389 444-500 (527)
145 PLN03134 glycine-rich RNA-bind 43.0 52 0.0011 29.7 5.3 56 120-187 36-94 (144)
146 PF04880 NUDE_C: NUDE protein, 42.8 35 0.00077 32.2 4.2 11 270-280 2-12 (166)
147 KOG4674 Uncharacterized conser 42.8 8.5E+02 0.018 31.3 22.0 118 228-346 1154-1285(1822)
148 KOG4593 Mitotic checkpoint pro 42.4 5.9E+02 0.013 29.4 23.8 41 386-426 276-316 (716)
149 PF10058 DUF2296: Predicted in 42.1 14 0.00029 28.6 1.1 16 33-48 37-52 (54)
150 cd07647 F-BAR_PSTPIP The F-BAR 42.0 3.3E+02 0.0073 26.4 18.0 133 275-417 70-207 (239)
151 COG4985 ABC-type phosphate tra 41.8 1.7E+02 0.0036 29.5 8.8 102 111-222 43-153 (289)
152 PF04508 Pox_A_type_inc: Viral 41.6 28 0.0006 22.7 2.3 18 393-410 2-19 (23)
153 KOG1103 Predicted coiled-coil 41.6 4.7E+02 0.01 28.0 13.9 52 305-356 101-152 (561)
154 PF00301 Rubredoxin: Rubredoxi 41.5 11 0.00024 28.4 0.5 13 39-51 33-45 (47)
155 PF04059 RRM_2: RNA recognitio 41.0 91 0.002 26.8 6.1 59 120-193 3-66 (97)
156 PRK04778 septation ring format 40.7 5.4E+02 0.012 28.4 19.8 10 175-184 163-172 (569)
157 PF14354 Lar_restr_allev: Rest 40.6 12 0.00027 28.5 0.7 10 40-50 3-12 (61)
158 cd07651 F-BAR_PombeCdc15_like 40.6 3.4E+02 0.0075 26.1 21.5 119 298-425 94-213 (236)
159 smart00531 TFIIE Transcription 40.6 15 0.00032 33.4 1.3 12 38-49 121-132 (147)
160 KOG0243 Kinesin-like protein [ 40.6 7.4E+02 0.016 30.0 19.9 28 251-278 445-472 (1041)
161 PF13870 DUF4201: Domain of un 40.5 3E+02 0.0065 25.4 16.9 16 299-314 62-77 (177)
162 COG4942 Membrane-bound metallo 40.4 5.1E+02 0.011 28.1 22.4 14 396-409 235-248 (420)
163 PF05129 Elf1: Transcription e 39.9 12 0.00026 31.1 0.6 14 36-49 18-31 (81)
164 PHA00616 hypothetical protein 39.9 9.5 0.00021 28.5 -0.0 23 40-65 1-23 (44)
165 PF07111 HCR: Alpha helical co 39.3 6.7E+02 0.014 29.1 18.1 149 256-412 164-351 (739)
166 KOG0963 Transcription factor/C 38.9 6.4E+02 0.014 28.7 22.0 44 380-426 291-341 (629)
167 PF15236 CCDC66: Coiled-coil d 38.5 3.4E+02 0.0074 25.5 15.9 94 215-308 15-113 (157)
168 KOG1265 Phospholipase C [Lipid 38.5 7.7E+02 0.017 29.6 19.2 137 241-411 1031-1176(1189)
169 KOG1994 Predicted RNA binding 38.4 14 0.0003 36.7 0.8 33 32-67 231-263 (268)
170 PF10174 Cast: RIM-binding pro 38.2 7.1E+02 0.015 29.1 21.6 25 388-412 468-492 (775)
171 PF06156 DUF972: Protein of un 38.0 2.5E+02 0.0054 24.6 8.5 12 308-319 73-84 (107)
172 PF13851 GAS: Growth-arrest sp 37.6 3.8E+02 0.0082 25.7 20.1 114 230-356 6-127 (201)
173 KOG2398 Predicted proline-seri 37.2 6.6E+02 0.014 28.5 16.4 132 278-409 46-181 (611)
174 TIGR00165 S18 ribosomal protei 37.0 54 0.0012 26.7 3.9 49 41-89 6-58 (70)
175 KOG1151 Tousled-like protein k 36.9 2.2E+02 0.0047 31.6 9.4 88 316-406 331-435 (775)
176 PF13909 zf-H2C2_5: C2H2-type 36.5 17 0.00038 22.5 0.8 19 41-63 1-19 (24)
177 KOG1029 Endocytic adaptor prot 36.4 7.9E+02 0.017 29.1 20.7 12 380-391 499-510 (1118)
178 PF10146 zf-C4H2: Zinc finger- 35.9 4.4E+02 0.0096 26.0 14.1 23 310-332 80-102 (230)
179 PF11214 Med2: Mediator comple 35.9 3.1E+02 0.0066 24.3 8.6 40 253-292 44-83 (105)
180 PF07246 Phlebovirus_NSM: Phle 35.6 2.8E+02 0.006 28.2 9.4 45 133-178 67-112 (264)
181 PRK00391 rpsR 30S ribosomal pr 35.4 58 0.0013 27.1 3.9 51 39-89 13-67 (79)
182 KOG0804 Cytoplasmic Zn-finger 35.0 6.5E+02 0.014 27.7 13.6 69 272-341 379-447 (493)
183 PF14915 CCDC144C: CCDC144C pr 35.0 5.4E+02 0.012 26.7 15.2 100 247-346 172-295 (305)
184 PF15023 DUF4523: Protein of u 34.9 53 0.0011 30.8 3.9 39 145-189 108-146 (166)
185 PF06428 Sec2p: GDP/GTP exchan 34.6 1.2E+02 0.0025 26.4 5.8 43 385-427 37-83 (100)
186 COG0724 RNA-binding proteins ( 34.4 86 0.0019 28.3 5.4 61 118-189 115-178 (306)
187 PF11608 Limkain-b1: Limkain b 34.4 48 0.001 28.3 3.3 46 120-178 4-49 (90)
188 PF13913 zf-C2HC_2: zinc-finge 34.3 23 0.0005 23.0 1.1 20 40-63 2-21 (25)
189 PF05701 WEMBL: Weak chloropla 34.1 6.6E+02 0.014 27.5 24.1 93 252-345 170-262 (522)
190 TIGR02977 phageshock_pspA phag 34.0 4.3E+02 0.0094 25.4 20.7 58 253-310 16-76 (219)
191 PRK13401 30S ribosomal protein 33.8 62 0.0013 27.3 3.9 50 41-90 14-67 (82)
192 PF07464 ApoLp-III: Apolipopho 33.7 88 0.0019 29.2 5.3 94 239-332 23-120 (155)
193 PF00769 ERM: Ezrin/radixin/mo 33.6 4.8E+02 0.01 25.8 15.3 66 296-361 15-86 (246)
194 cd07623 BAR_SNX1_2 The Bin/Amp 33.6 3.2E+02 0.007 26.4 9.4 61 210-274 83-143 (224)
195 PRK13182 racA polar chromosome 33.4 2.5E+02 0.0054 26.6 8.4 34 377-410 110-143 (175)
196 PF10498 IFT57: Intra-flagella 33.4 6E+02 0.013 26.8 15.8 41 44-92 16-57 (359)
197 cd00730 rubredoxin Rubredoxin; 33.3 14 0.0003 28.2 -0.1 13 39-51 33-45 (50)
198 CHL00077 rps18 ribosomal prote 33.1 68 0.0015 27.3 4.0 49 41-90 18-69 (86)
199 KOG2072 Translation initiation 32.5 9.2E+02 0.02 28.7 18.5 26 380-405 617-642 (988)
200 TIGR01661 ELAV_HUD_SF ELAV/HuD 32.5 86 0.0019 31.3 5.5 48 120-178 5-55 (352)
201 PF05769 DUF837: Protein of un 32.4 4.5E+02 0.0097 25.0 19.9 17 412-428 163-179 (181)
202 KOG4673 Transcription factor T 32.0 8.8E+02 0.019 28.3 19.0 157 241-426 455-622 (961)
203 TIGR01622 SF-CC1 splicing fact 31.5 88 0.0019 32.7 5.6 57 120-187 91-149 (457)
204 COG5533 UBP5 Ubiquitin C-termi 31.3 31 0.00067 36.0 2.0 28 16-49 266-293 (415)
205 COG1842 PspA Phage shock prote 31.3 5.2E+02 0.011 25.4 17.5 137 270-430 4-141 (225)
206 TIGR02977 phageshock_pspA phag 31.1 4.9E+02 0.011 25.0 12.3 52 289-340 23-74 (219)
207 TIGR00219 mreC rod shape-deter 31.1 1.2E+02 0.0026 30.6 6.2 40 390-429 71-111 (283)
208 KOG2129 Uncharacterized conser 30.8 7.4E+02 0.016 27.1 16.8 122 239-361 165-307 (552)
209 KOG0994 Extracellular matrix g 30.8 1.1E+03 0.025 29.2 22.0 35 228-263 1497-1531(1758)
210 COG4311 SoxD Sarcosine oxidase 30.6 21 0.00045 30.8 0.6 18 40-57 3-20 (97)
211 KOG0962 DNA repair protein RAD 30.6 1.1E+03 0.025 29.2 19.9 53 363-422 839-891 (1294)
212 COG5074 t-SNARE complex subuni 30.2 5.9E+02 0.013 25.8 10.9 91 260-360 24-114 (280)
213 PTZ00491 major vault protein; 30.1 5.7E+02 0.012 30.2 11.8 23 265-287 630-652 (850)
214 KOG0018 Structural maintenance 29.9 1.1E+03 0.024 28.7 21.2 114 214-337 631-754 (1141)
215 TIGR03017 EpsF chain length de 29.7 6.6E+02 0.014 26.2 15.0 57 253-309 253-309 (444)
216 KOG0971 Microtubule-associated 29.6 1.1E+03 0.023 28.6 20.0 37 309-345 394-430 (1243)
217 PF12344 UvrB: Ultra-violet re 29.5 72 0.0016 23.9 3.2 23 279-301 5-30 (44)
218 KOG4643 Uncharacterized coiled 29.4 1.1E+03 0.024 28.6 20.1 23 384-406 505-527 (1195)
219 PF11559 ADIP: Afadin- and alp 29.2 4.2E+02 0.0091 23.7 16.3 13 213-225 14-26 (151)
220 KOG0577 Serine/threonine prote 29.2 9.6E+02 0.021 27.9 21.0 171 245-422 478-693 (948)
221 PF04094 DUF390: Protein of un 29.2 9.8E+02 0.021 28.0 17.9 151 239-398 413-574 (828)
222 TIGR00634 recN DNA repair prot 28.9 8.1E+02 0.018 26.9 16.8 9 40-48 15-23 (563)
223 PF13256 DUF4047: Domain of un 28.9 4.1E+02 0.009 24.1 8.4 75 239-332 27-102 (125)
224 PF07899 Frigida: Frigida-like 28.8 1.6E+02 0.0035 30.0 6.7 42 371-412 238-284 (290)
225 PF05701 WEMBL: Weak chloropla 28.8 8.1E+02 0.018 26.9 22.4 28 391-418 217-244 (522)
226 cd07652 F-BAR_Rgd1 The F-BAR ( 28.8 5.6E+02 0.012 25.0 20.6 51 297-347 97-147 (234)
227 PF06054 CoiA: Competence prot 28.3 89 0.0019 32.8 4.9 109 38-162 28-143 (375)
228 KOG3859 Septins (P-loop GTPase 28.2 7.2E+02 0.016 26.1 11.8 38 242-279 329-366 (406)
229 KOG4571 Activating transcripti 28.2 1.7E+02 0.0036 30.2 6.6 43 383-425 239-285 (294)
230 PF07889 DUF1664: Protein of u 27.8 4.6E+02 0.0099 23.7 13.9 92 240-335 29-123 (126)
231 PF15397 DUF4618: Domain of un 27.8 6.5E+02 0.014 25.5 20.4 45 261-305 63-107 (258)
232 COG1340 Uncharacterized archae 27.8 7E+02 0.015 25.8 22.7 48 251-298 52-99 (294)
233 PF09738 DUF2051: Double stran 27.7 6.9E+02 0.015 25.8 17.0 30 380-413 218-247 (302)
234 PF15035 Rootletin: Ciliary ro 27.6 5.4E+02 0.012 24.5 14.9 97 244-345 6-122 (182)
235 PRK12728 fliE flagellar hook-b 27.6 2.4E+02 0.0051 24.5 6.6 38 268-306 64-101 (102)
236 KOG3408 U1-like Zn-finger-cont 27.5 42 0.00092 30.3 2.0 26 37-65 54-79 (129)
237 PRK04778 septation ring format 27.5 8.7E+02 0.019 26.8 23.0 63 235-297 274-339 (569)
238 PF08581 Tup_N: Tup N-terminal 27.4 3.6E+02 0.0079 22.4 11.5 32 380-411 45-76 (79)
239 PF05030 SSXT: SSXT protein (N 27.3 1.6E+02 0.0035 23.8 5.0 24 279-302 6-29 (65)
240 COG4888 Uncharacterized Zn rib 27.3 30 0.00066 30.2 1.0 12 37-48 19-30 (104)
241 KOG1962 B-cell receptor-associ 27.1 3.5E+02 0.0075 26.7 8.3 32 318-349 151-182 (216)
242 PF08271 TF_Zn_Ribbon: TFIIB z 26.9 31 0.00067 24.8 0.9 10 41-50 1-10 (43)
243 COG0419 SbcC ATPase involved i 26.7 1.1E+03 0.023 27.6 23.5 19 132-150 107-125 (908)
244 KOG3214 Uncharacterized Zn rib 26.6 27 0.00058 30.6 0.6 16 36-51 19-34 (109)
245 PF04645 DUF603: Protein of un 26.5 5.9E+02 0.013 24.5 10.7 42 301-342 120-162 (181)
246 PRK00464 nrdR transcriptional 26.3 28 0.0006 32.4 0.7 10 41-50 1-10 (154)
247 PF12297 EVC2_like: Ellis van 26.1 8.8E+02 0.019 26.4 13.5 39 237-277 114-152 (429)
248 PRK06800 fliH flagellar assemb 26.1 6.3E+02 0.014 24.7 11.8 41 344-384 85-132 (228)
249 KOG1962 B-cell receptor-associ 25.9 5.5E+02 0.012 25.4 9.4 61 262-330 152-212 (216)
250 KOG0127 Nucleolar protein fibr 25.7 84 0.0018 35.0 4.2 51 118-177 117-167 (678)
251 PF03811 Zn_Tnp_IS1: InsA N-te 25.6 37 0.0008 24.2 1.0 10 40-49 5-14 (36)
252 PF05010 TACC: Transforming ac 25.6 6.4E+02 0.014 24.6 23.1 81 255-335 10-93 (207)
253 PRK10144 formate-dependent nit 25.4 28 0.00062 31.4 0.5 29 39-67 39-73 (126)
254 PRK01156 chromosome segregatio 25.4 1.1E+03 0.024 27.3 21.6 16 133-148 102-117 (895)
255 PF00038 Filament: Intermediat 25.2 6.8E+02 0.015 24.8 20.9 35 393-427 274-308 (312)
256 KOG4787 Uncharacterized conser 25.0 1.1E+03 0.023 27.1 14.2 39 226-264 372-410 (852)
257 COG3088 CcmH Uncharacterized p 25.0 29 0.00062 32.4 0.5 15 39-53 43-57 (153)
258 KOG0107 Alternative splicing f 25.0 89 0.0019 30.2 3.7 36 140-179 23-58 (195)
259 PF10168 Nup88: Nuclear pore c 24.9 1.1E+03 0.024 27.2 18.0 7 39-45 363-369 (717)
260 PF05483 SCP-1: Synaptonemal c 24.8 1.1E+03 0.025 27.3 22.9 98 232-335 90-214 (786)
261 TIGR01628 PABP-1234 polyadenyl 24.6 1.2E+02 0.0026 32.9 5.2 50 120-180 90-141 (562)
262 TIGR01642 U2AF_lg U2 snRNP aux 24.5 1.4E+02 0.003 31.7 5.6 55 120-186 297-354 (509)
263 COG3883 Uncharacterized protei 24.4 7.6E+02 0.017 25.1 19.7 106 253-358 51-191 (265)
264 PF02994 Transposase_22: L1 tr 24.4 1.3E+02 0.0027 31.7 5.1 19 327-345 142-160 (370)
265 smart00540 LEM in nuclear memb 24.4 60 0.0013 24.2 2.0 23 138-160 5-27 (44)
266 TIGR01659 sex-lethal sex-letha 24.3 1.4E+02 0.0029 31.1 5.3 62 119-191 194-258 (346)
267 PF12171 zf-C2H2_jaz: Zinc-fin 24.2 43 0.00093 21.5 1.1 23 40-65 1-23 (27)
268 COG1340 Uncharacterized archae 24.2 8.1E+02 0.018 25.3 19.9 25 250-274 30-54 (294)
269 PF01807 zf-CHC2: CHC2 zinc fi 23.9 58 0.0012 27.5 2.1 32 31-66 45-76 (97)
270 PF10481 CENP-F_N: Cenp-F N-te 23.6 8.3E+02 0.018 25.2 11.6 100 316-426 16-126 (307)
271 PLN03188 kinesin-12 family pro 23.5 1.5E+03 0.032 28.2 14.7 111 268-379 1114-1253(1320)
272 KOG0964 Structural maintenance 23.5 1.4E+03 0.03 27.8 19.3 38 263-300 260-297 (1200)
273 smart00355 ZnF_C2H2 zinc finge 23.4 51 0.0011 19.5 1.3 20 41-63 1-20 (26)
274 PF03020 LEM: LEM domain; Int 23.3 14 0.0003 27.5 -1.5 23 138-160 5-27 (43)
275 PF02891 zf-MIZ: MIZ/SP-RING z 23.3 32 0.00069 25.9 0.4 10 38-47 39-48 (50)
276 TIGR03752 conj_TIGR03752 integ 23.2 8.8E+02 0.019 26.7 11.2 17 218-234 43-59 (472)
277 COG0556 UvrB Helicase subunit 23.1 3.4E+02 0.0074 30.6 8.2 24 278-301 555-581 (663)
278 PF02388 FemAB: FemAB family; 22.9 4.9E+02 0.011 27.5 9.2 167 133-308 114-295 (406)
279 PRK14160 heat shock protein Gr 22.9 7.3E+02 0.016 24.3 10.3 65 249-313 49-113 (211)
280 KOG4302 Microtubule-associated 22.8 1.2E+03 0.026 26.8 16.1 89 246-334 225-313 (660)
281 cd07672 F-BAR_PSTPIP2 The F-BA 22.7 7.4E+02 0.016 24.4 19.4 102 309-417 105-208 (240)
282 TIGR03752 conj_TIGR03752 integ 22.4 7.6E+02 0.016 27.2 10.5 13 397-409 128-140 (472)
283 PF06705 SF-assemblin: SF-asse 22.4 7.3E+02 0.016 24.2 20.2 63 279-341 89-151 (247)
284 PF12999 PRKCSH-like: Glucosid 22.4 4.9E+02 0.011 24.9 8.2 57 337-413 118-174 (176)
285 PF05557 MAD: Mitotic checkpoi 22.3 29 0.00063 39.2 0.0 37 392-428 288-324 (722)
286 PTZ00255 60S ribosomal protein 22.1 40 0.00087 28.8 0.8 11 38-48 34-44 (90)
287 KOG2036 Predicted P-loop ATPas 22.1 4.9E+02 0.011 30.5 9.2 46 237-282 864-909 (1011)
288 KOG4722 Zn-finger protein [Gen 22.1 1.1E+03 0.023 26.0 11.4 93 321-413 261-359 (672)
289 PRK13922 rod shape-determining 22.0 2.2E+02 0.0047 28.1 6.1 41 389-429 73-113 (276)
290 PF13399 LytR_C: LytR cell env 21.7 3E+02 0.0065 22.2 5.9 60 121-193 6-65 (90)
291 KOG0130 RNA-binding protein RB 21.7 1.2E+02 0.0026 28.3 3.7 51 116-177 70-123 (170)
292 TIGR02338 gimC_beta prefoldin, 21.7 3E+02 0.0065 23.6 6.2 60 220-287 48-107 (110)
293 PF07946 DUF1682: Protein of u 21.6 6.4E+02 0.014 25.8 9.5 37 324-360 279-315 (321)
294 PF14197 Cep57_CLD_2: Centroso 21.5 4.4E+02 0.0095 21.3 9.6 67 259-340 3-69 (69)
295 COG1327 Predicted transcriptio 21.5 37 0.00079 31.8 0.5 8 42-49 2-9 (156)
296 PRK12366 replication factor A; 21.5 55 0.0012 36.8 1.9 17 33-49 541-557 (637)
297 KOG0243 Kinesin-like protein [ 21.3 1.5E+03 0.033 27.5 19.1 24 254-277 404-427 (1041)
298 PF11944 DUF3461: Protein of u 21.2 3.5E+02 0.0076 24.5 6.5 53 278-338 70-122 (125)
299 PF05911 DUF869: Plant protein 21.1 1.4E+03 0.03 26.8 19.0 55 350-412 701-760 (769)
300 KOG4721 Serine/threonine prote 21.1 3.6E+02 0.0077 31.0 7.8 37 309-345 426-462 (904)
301 TIGR03147 cyt_nit_nrfF cytochr 21.1 38 0.00081 30.7 0.4 29 39-67 39-73 (126)
302 PF01780 Ribosomal_L37ae: Ribo 21.0 42 0.00091 28.7 0.7 12 38-49 33-44 (90)
303 PHA03151 hypothetical protein; 20.9 34 0.00074 33.6 0.1 10 111-120 249-258 (259)
304 COG5019 CDC3 Septin family pro 20.8 5.7E+02 0.012 27.3 9.0 55 289-343 313-367 (373)
305 PF04849 HAP1_N: HAP1 N-termin 20.7 9.7E+02 0.021 24.9 14.4 45 252-296 197-241 (306)
306 smart00659 RPOLCX RNA polymera 20.6 55 0.0012 24.2 1.2 13 37-49 16-28 (44)
307 cd04718 BAH_plant_2 BAH, or Br 20.6 47 0.001 30.8 1.0 15 35-49 13-27 (148)
308 smart00451 ZnF_U1 U1-like zinc 20.4 79 0.0017 21.0 1.8 23 39-65 2-25 (35)
309 PRK14161 heat shock protein Gr 20.2 7.5E+02 0.016 23.5 9.2 60 255-314 13-72 (178)
310 PF14190 DUF4313: Domain of un 20.1 2.4E+02 0.0052 24.7 5.2 58 118-177 28-87 (105)
311 KOG1103 Predicted coiled-coil 20.1 1.1E+03 0.024 25.3 14.9 23 383-405 243-265 (561)
312 PF12874 zf-met: Zinc-finger o 20.1 67 0.0014 19.8 1.3 22 41-65 1-22 (25)
313 TIGR01659 sex-lethal sex-letha 20.1 2E+02 0.0044 29.9 5.6 54 121-186 110-166 (346)
314 PRK09678 DNA-binding transcrip 20.0 45 0.00098 27.3 0.7 10 41-50 2-11 (72)
No 1
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=7.2e-48 Score=335.81 Aligned_cols=116 Identities=50% Similarity=0.949 Sum_probs=88.8
Q ss_pred CCCeeeccceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHh
Q 047081 111 SDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 111 ~de~~VWPwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
+||+|||||||||+||+|+.+++|+++|+|+++|+++|+. |+|.+|+||||+.||+|+|||+|++||+||+||++||+
T Consensus 1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~--f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAE--FNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHh--cCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 5899999999999999996667999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhhhccCChhhhhccCCCCCcceeeecccCCCCCCcch
Q 047081 191 SFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNII 228 (432)
Q Consensus 191 ~Fe~~~~Gr~dW~~~~~~~~~LYGw~AradD~~~~~~i 228 (432)
||+.++|||+||.+++..+++||||||++|||++.|||
T Consensus 79 ~F~~~~~Gr~dW~~~~~~~~~lYGw~A~~dD~~~~~~i 116 (116)
T PF03468_consen 79 HFEAQGHGRKDWERRRGGGSQLYGWVARADDYNSPGPI 116 (116)
T ss_dssp HHHHTT-SHHHHT-SSS---S-EEEE-BHHHHHSSSHH
T ss_pred HHHHcCCCHHHHhhccCCCCceeeeeCchhhccCCCCC
Confidence 99999999999999888899999999999999999986
No 2
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.71 E-value=3.9e-18 Score=124.00 Aligned_cols=42 Identities=74% Similarity=1.257 Sum_probs=39.2
Q ss_pred ccCCCCCCccccCcHHHHhhhhccCCCC-ccChHHHHhHHHHH
Q 047081 43 CPYCPKKRKHDYLYKDLLQHASGIGNSS-KRSAKEKANHLALA 84 (432)
Q Consensus 43 CP~C~~~kk~~y~~~~LlqHA~gvg~~~-~r~ak~ka~HlaLa 84 (432)
||||+++++++|.|++|||||+|||.|| .|+++++|+|||||
T Consensus 1 CP~C~~kkk~~Y~~~~LlqHA~gvg~~~~~r~~k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQHASGVGASSSRRSAKEKANHRALA 43 (43)
T ss_pred CCCCCCCCCcceehhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence 9999999999999999999999999665 68899999999996
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.57 E-value=2.2 Score=43.55 Aligned_cols=138 Identities=22% Similarity=0.270 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 047081 254 LLVSNLTNTIEVKNKHLEEMKERCIETSNFIENL---MEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQ 330 (432)
Q Consensus 254 ~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~---meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k 330 (432)
+++..|.+.+ ..++..|+.-+......+..+ +.+-...+.+-..|+..+++...+-..-=-.+.+.++.+|.+.
T Consensus 145 ~ll~gl~~~L---~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 145 QLLEGLKEGL---EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHH
Confidence 3444444333 334444444444433333333 3333444444455777777666552211124455566666666
Q ss_pred HHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047081 331 KKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDA 410 (432)
Q Consensus 331 ~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~ 410 (432)
..+|+.+.++|..++. ++..+..+++. -..+|.++...|-++++.++.
T Consensus 222 ~~~i~~~k~~l~el~~----el~~l~~~i~~----------------------------~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 222 KEEIEAKKKELAELQE----ELEELEEKIEE----------------------------LEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655443 23333333322 234555566666666666653
Q ss_pred Hh-hhHHHHHhhhcccc
Q 047081 411 KQ-ALELEIERLRGTSK 426 (432)
Q Consensus 411 kQ-~LELEi~qLkG~L~ 426 (432)
.+ .=.-||.+|+.++.
T Consensus 270 ~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 270 CRGWTRSEVKRLKAKVD 286 (325)
T ss_pred hcCCCHHHHHHHHHHHH
Confidence 22 24445555555443
No 4
>PRK11637 AmiB activator; Provisional
Probab=94.56 E-value=7.3 Score=41.08 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 313 FQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 313 ~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
-..+++.....+.+|+.++.+|+..-.+|....+....++..|+.++.+
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888888888888888888888888888888888777655
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.30 E-value=4.5 Score=44.50 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 047081 394 KEELHNKIIQLEKQLD 409 (432)
Q Consensus 394 Ke~~~~kil~LEkqLd 409 (432)
.+.+...+..++.+|.
T Consensus 285 ~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.19 E-value=8 Score=48.35 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH----------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEM----------KERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEH 320 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~l----------E~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ 320 (432)
+..+....|...++.-+..|++. ..+...--..|++.+++...-|+++.+++++++..+.....-=+++.
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l 1201 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQL 1201 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666543 34444445678888888889999999999999998888877777777
Q ss_pred HhhHHHHHHHHHHHHHhhhHHHHHH
Q 047081 321 ENFKLQLEAQKKELEFLGVDLQKRE 345 (432)
Q Consensus 321 ekl~~eLe~k~~eL~~r~~eL~k~~ 345 (432)
.+.+..|+..++.|+.-.-+|.-..
T Consensus 1202 ~~~k~~lekek~~lq~e~~~l~~ev 1226 (1930)
T KOG0161|consen 1202 QKDKAKLEKEKSDLQREIADLAAEL 1226 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666665555544333
No 7
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.93 E-value=9 Score=44.87 Aligned_cols=171 Identities=23% Similarity=0.213 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH--------------------------
Q 047081 241 ISGLVEEEARKKNLLV--SNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKD-------------------------- 292 (432)
Q Consensus 241 i~ei~~e~~rk~~~lv--~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~-------------------------- 292 (432)
-.+|..++.++....- +.|..+|-.-++.+..|+.-....-.++..+|+|+-
T Consensus 279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~e 358 (1195)
T KOG4643|consen 279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELE 358 (1195)
T ss_pred HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhh
Confidence 3455566666544444 566667777777777777666666666666666652
Q ss_pred ---------HHHH--HHHHHHHHHHHHH-------HHHHHHH--HHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHH
Q 047081 293 ---------RLVQ--GYNEEIKKIQLSA-------QYHFQRI--FTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDR 352 (432)
Q Consensus 293 ---------~l~~--~~neEi~kmq~~a-------~~~~~~I--~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er 352 (432)
.|-. +|.-+|.+-.-.+ +++-..| +-+.++...-|+-+-+.|+.|-.++.++-+.-+..=
T Consensus 359 n~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~ 438 (1195)
T KOG4643|consen 359 NESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLE 438 (1195)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 3333333322111 1111111 112233333455555666666667777777777777
Q ss_pred HHHHHHHHHhhhccchhhHhHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047081 353 KALAEEIEKNAMRNSSLQLATLEQQK---ADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAK 411 (432)
Q Consensus 353 ~kl~~e~~kn~~~~~~l~lA~~EQ~k---ade~vlkL~e~hkreKe~~~~kil~LEkqLd~k 411 (432)
++|..|.++--..++.++.+.-+|++ ++..++.++..+..+-++++++|..|-+-|...
T Consensus 439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r 500 (1195)
T KOG4643|consen 439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNR 500 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777888888777743 466677777777777777777766666555443
No 8
>PRK11637 AmiB activator; Provisional
Probab=93.66 E-value=11 Score=39.76 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=14.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Q 047081 315 RIFTEHENFKLQLEAQKKELEFLGVDLQKRE 345 (432)
Q Consensus 315 ~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~ 345 (432)
.|.+....+-.++...+++|.....+|+...
T Consensus 163 ~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~ 193 (428)
T PRK11637 163 YLNQARQETIAELKQTREELAAQKAELEEKQ 193 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444444433
No 9
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.55 E-value=4.8 Score=43.42 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------------------------HHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYN------------------------EEIKKIQ 306 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~n------------------------eEi~kmq 306 (432)
..++.+.||-..++..++||++-..-..-.-+.|.++-..--.|.+.|- +||..||
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5577788888888888888886654444444444444433334444443 3555566
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 307 LSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 307 ~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
+.--+--......-+-|+.|-+..-+++-+--.++++++..|-.||++|.-..+|
T Consensus 467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leK 521 (527)
T PF15066_consen 467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEK 521 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554444444455555666666666666677777888888888888888766665
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.46 E-value=15 Score=40.64 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=42.6
Q ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 047081 233 RKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNE 300 (432)
Q Consensus 233 rK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~ne 300 (432)
+.+.+|........++.......+..|...+....+....|+..+...+.+...+-+|++.|...+.+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455556666666666667777777777888888888777777666554443
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.46 E-value=10 Score=45.04 Aligned_cols=173 Identities=21% Similarity=0.232 Sum_probs=99.3
Q ss_pred HHHHHHHHHH---------HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 047081 253 NLLVSNLTNT---------IEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSA------QYHFQRIF 317 (432)
Q Consensus 253 ~~lv~~L~~~---------i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a------~~~~~~I~ 317 (432)
.=+|.||-.. |++-++++.-|.+.|.+....+..+..|++.|....++-|..++... ..++|.++
T Consensus 250 ~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~ 329 (1293)
T KOG0996|consen 250 EGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYIL 329 (1293)
T ss_pred chHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888766 78899999999999999999999999999999999999887776542 34455665
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhHHH-----------HHHhhcHHHHHHHH------H-HHHHhhhccchhhHhHHHHhhh
Q 047081 318 TEHENFKLQLEAQKKELEFLGVDLQ-----------KREAKNENDRKALA------E-EIEKNAMRNSSLQLATLEQQKA 379 (432)
Q Consensus 318 ~e~ekl~~eLe~k~~eL~~r~~eL~-----------k~~~~~~~er~kl~------~-e~~kn~~~~~~l~lA~~EQ~ka 379 (432)
.+. +..|.....+++.-...|. .....++..++.+. . ...-...+-..+......-+.+
T Consensus 330 ~~~---~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~ 406 (1293)
T KOG0996|consen 330 YES---RAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEK 406 (1293)
T ss_pred HHH---HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 552 2222222111111111111 11111111111111 1 0000111122233333333334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHhhhHHHHHhhhcccccc
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLEKQLD----AKQALELEIERLRGTSKCD 428 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LEkqLd----~kQ~LELEi~qLkG~L~Vm 428 (432)
-.++..=.++-+++.|++..++-++|+-+. ..|++..||.+|.+.+++.
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~ 459 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE 459 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH
Confidence 444555555556777777777777766554 5688889999998877653
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.14 E-value=22 Score=44.74 Aligned_cols=163 Identities=20% Similarity=0.252 Sum_probs=89.5
Q ss_pred cceeeecccC------CCCCCcchhhhhhhccCCCChHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047081 211 GLYGWVARSD------DHSLNNIIGEHLRKNRDLKTISG--------------LVEEEARKKNLLVSNLTNTIEVKNKHL 270 (432)
Q Consensus 211 ~LYGw~Arad------D~~~~~~iG~~LrK~gdLKTi~e--------------i~~e~~rk~~~lv~~L~~~i~~kn~~l 270 (432)
..=||+|+.+ +....-+|.+..|.+..||+-+= ...+..++.+..+..|..+++......
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~ 861 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKR 861 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4457777654 33334468999999999988332 224555555556666666666555555
Q ss_pred HHHHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHhhh
Q 047081 271 EEMKERCIETSNFIENLMEE----KDRLVQGYNEEIKKIQLSAQYHFQRIFTE-------HENFKLQLEAQKKELEFLGV 339 (432)
Q Consensus 271 ~~lE~k~~~~s~sL~~~mee----k~~l~~~~neEi~kmq~~a~~~~~~I~~e-------~ekl~~eLe~k~~eL~~r~~ 339 (432)
+++|.+.-.+...+.-+..+ ++.. +=.+|+...-...+..+++++.+ .+.....|+.++++++..|.
T Consensus 862 ~ele~~~~~~~~e~~~l~~~l~~e~~~~--~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~ 939 (1930)
T KOG0161|consen 862 KELEEKLVKLLEEKNDLQEQLQAEKENL--AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQ 939 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444333333322 1111 11334444444444555555443 34445566667777777777
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHH
Q 047081 340 DLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLE 375 (432)
Q Consensus 340 eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~E 375 (432)
.|.+.-..-+..+.++..|+.-...+...|+=+...
T Consensus 940 ~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 940 ELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655555666667776665544445555444433
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=26 Score=41.85 Aligned_cols=110 Identities=18% Similarity=0.252 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 047081 252 KNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYN------EEIKKIQLSAQYHFQRIFTEHENFKL 325 (432)
Q Consensus 252 ~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~n------eEi~kmq~~a~~~~~~I~~e~ekl~~ 325 (432)
-....+.++|....-.+..+++|..+-..-+.|.++.....+|...-. .|+.+|=..++..++..-.+.++|..
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~ 454 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE 454 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence 455667777777777788888888777777777777766555443332 37888888899999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 326 QLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 326 eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
.++...++|+.--..|++...---.++.++++++..
T Consensus 455 ~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~ 490 (1293)
T KOG0996|consen 455 LLEKEERELDEILDSLKQETEGIREEIEKLEKELMP 490 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999887777777666566677777777644
No 14
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.45 E-value=23 Score=40.15 Aligned_cols=133 Identities=24% Similarity=0.249 Sum_probs=75.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHH
Q 047081 275 ERCIETSNFIENLMEEKDRLVQGYNE---EIKKIQ----------LSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDL 341 (432)
Q Consensus 275 ~k~~~~s~sL~~~meek~~l~~~~ne---Ei~kmq----------~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL 341 (432)
.++.+.+.++..+--|+..+-+.... |+.++| ......+++....+..||.+|++-+.++.....++
T Consensus 485 LKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 485 LKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655554443 333333 34556778888888889999999999998888888
Q ss_pred HHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 342 QKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQ 407 (432)
Q Consensus 342 ~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkq 407 (432)
.-..-.++...|..+-|+-+.......|.=...-=.|.=++-.+.+++=..+...+-++|..--+|
T Consensus 565 ~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq 630 (786)
T PF05483_consen 565 KCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQ 630 (786)
T ss_pred HHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666777777776666543332222211111112223344455555444444444444333333
No 15
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.90 E-value=29 Score=41.64 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=49.5
Q ss_pred HHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcH
Q 047081 273 MKERCIETSNFIENLMEEKD---RLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNE 349 (432)
Q Consensus 273 lE~k~~~~s~sL~~~meek~---~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~ 349 (432)
+...+++....+...-+++. .+...+.+|+... +.-.++.+...+....++.+|+.....+........++.....
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~ 570 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSK 570 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhh
Confidence 44566666666666555554 4456677788877 4455666666666777777777655555544444444443333
Q ss_pred HHHHHHHHHHH
Q 047081 350 NDRKALAEEIE 360 (432)
Q Consensus 350 ~er~kl~~e~~ 360 (432)
.=.+.+.++.+
T Consensus 571 e~~~~iq~~~e 581 (1317)
T KOG0612|consen 571 ELSKQIQQELE 581 (1317)
T ss_pred hhhHHHHHHhh
Confidence 33333333333
No 16
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.67 E-value=22 Score=38.27 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 047081 240 TISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNE--EIKKIQLSAQYHFQRIF 317 (432)
Q Consensus 240 Ti~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~ne--Ei~kmq~~a~~~~~~I~ 317 (432)
+..|+-.+....-. ..+..++..-.+.+++|+.--+.+-..-.+++.|+-+|...|+. |+.+=|..-... +|.
T Consensus 204 ~tedl~~e~mee~r---~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE--~l~ 278 (502)
T KOG0982|consen 204 ETEDLLVEGMEEER---IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEE--SLS 278 (502)
T ss_pred chhhhhhhhhhchh---hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHH
Confidence 34444444443222 23455666777788888887788878888899999988888873 555544432211 111
Q ss_pred HHH-------HhhHH-------HHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHH
Q 047081 318 TEH-------ENFKL-------QLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNV 383 (432)
Q Consensus 318 ~e~-------ekl~~-------eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~v 383 (432)
++. -++.. -++.+.+-|+.-.-+|.-..+....-.-+|+++.++-...-..+.+-..+.|+-...+
T Consensus 279 Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 279 EEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111 1222334444445555556666666677888888776666666666666777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 047081 384 RKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIE 419 (432)
Q Consensus 384 lkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~ 419 (432)
.--.--+.++|++...=|.+|-++|.--|.+-+..+
T Consensus 359 ~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 359 NDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666889999999999999998887765544433
No 17
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.58 E-value=34 Score=40.36 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHhhhHHHHHhhhccccccc
Q 047081 401 IIQLEKQLDAKQALELEIERLRGTSKCDE 429 (432)
Q Consensus 401 il~LEkqLd~kQ~LELEi~qLkG~L~Vmk 429 (432)
+..-|+=+.+++..+|+++.|-+-+.-|+
T Consensus 891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~ 919 (1174)
T KOG0933|consen 891 LTSQEKCLSEKSDGELERKKLEHEVTKLE 919 (1174)
T ss_pred hhHHHHHHHHhhcccchHHHHHhHHHHhh
Confidence 34556778889999999999988766554
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.53 E-value=20 Score=41.19 Aligned_cols=88 Identities=27% Similarity=0.396 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 047081 256 VSNLTNTIEVKNKHLEEMKERCI---------ETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQ 326 (432)
Q Consensus 256 v~~L~~~i~~kn~~l~~lE~k~~---------~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~e 326 (432)
+.+|..++..+.+.+..+..++. ....+|...+.+++++....++....-.+-..+-+...-.++..++..
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~ 480 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK 480 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888888888888888777 555777888888888888877654443333445555555666677777
Q ss_pred HHHHHHHHHHhhhHHHH
Q 047081 327 LEAQKKELEFLGVDLQK 343 (432)
Q Consensus 327 Le~k~~eL~~r~~eL~k 343 (432)
+++.-.+|..+.-+|..
T Consensus 481 ~~~LQ~eLsEk~~~l~~ 497 (775)
T PF10174_consen 481 LESLQKELSEKELQLED 497 (775)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 77776776666666553
No 19
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.07 E-value=25 Score=40.09 Aligned_cols=153 Identities=19% Similarity=0.252 Sum_probs=72.5
Q ss_pred hhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 047081 230 EHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLM-EEKDRLVQGYNEEIKKIQLS 308 (432)
Q Consensus 230 ~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~m-eek~~l~~~~neEi~kmq~~ 308 (432)
+|||+. .|+-..-+..++.|-..+|-+-+-.+++..-++. ..--+++.|.- -|-+.|...-.++|.++.+
T Consensus 789 rflRrQ-eLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrF-------eqE~~~kkr~~d~EmenlErqQkq~iE~~Eq- 859 (1187)
T KOG0579|consen 789 RFLRRQ-ELRELRRLQKEEARQQQQLQAKGIKQVEQQARRF-------EQEQTNKKRTSDLEMENLERQQKQEIEDTEQ- 859 (1187)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 677776 7777777888888877777666665555443332 11112222221 1234444444455554443
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHh-----hcHHHHHH-HHHHHHHhhhc--cchhhHhHHHHhhhh
Q 047081 309 AQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREA-----KNENDRKA-LAEEIEKNAMR--NSSLQLATLEQQKAD 380 (432)
Q Consensus 309 a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~-----~~~~er~k-l~~e~~kn~~~--~~~l~lA~~EQ~kad 380 (432)
+|..+.-++..++|.+-|.-++....+-++--|-.. .+-..|+- |.+-++....+ -..-..-+.-||.++
T Consensus 860 --~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le 937 (1187)
T KOG0579|consen 860 --AHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLE 937 (1187)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344444455555555555555444444333322111 11111111 11111111111 001122334566678
Q ss_pred hHHHHHHHHHHHH
Q 047081 381 DNVRKLAEDQKIE 393 (432)
Q Consensus 381 e~vlkL~e~hkre 393 (432)
-.+.+++++||++
T Consensus 938 ~~lkrm~~~~k~e 950 (1187)
T KOG0579|consen 938 AMLKRMAEKHKEE 950 (1187)
T ss_pred HHHHHHHHHHHHH
Confidence 8888899999854
No 20
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.54 E-value=40 Score=39.22 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=15.5
Q ss_pred CCCccccchhhHHHHHHhcCCCCc
Q 047081 133 DGRSVGESGSKLKDELIRRGLHPT 156 (432)
Q Consensus 133 dg~~~G~s~~~L~~~l~~~GF~p~ 156 (432)
||..+ +...+.+.|...||.|.
T Consensus 113 n~~~~--~~~~~~~~l~~~~~~~~ 134 (1164)
T TIGR02169 113 NGQRV--RLSEIHDFLAAAGIYPE 134 (1164)
T ss_pred CCccc--cHHHHHHHHHHcCCCcC
Confidence 55544 56778888888777764
No 21
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=90.36 E-value=0.16 Score=38.54 Aligned_cols=24 Identities=38% Similarity=0.920 Sum_probs=18.9
Q ss_pred CeeeccCCCCCCccccCcHHHHhhhhcc
Q 047081 39 ETFTCPYCPKKRKHDYLYKDLLQHASGI 66 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y~~~~LlqHA~gv 66 (432)
.+|.||||+. .++..+|+.|-...
T Consensus 1 ~~f~CP~C~~----~~~~~~L~~H~~~~ 24 (54)
T PF05605_consen 1 DSFTCPYCGK----GFSESSLVEHCEDE 24 (54)
T ss_pred CCcCCCCCCC----ccCHHHHHHHHHhH
Confidence 3699999974 47889999996653
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.04 E-value=40 Score=38.44 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047081 259 LTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIK 303 (432)
Q Consensus 259 L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~ 303 (432)
++..|....+.-++|+.+++..+.+.+.-++-...|...+.+|.+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466677777778888877777766655555555555555544
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=88.48 E-value=1.4 Score=33.00 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CCCceeEEEEeCCCccchHHHHh
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
+.|-|+|. ..+..+|++.|+. |.+. .+....+. .-+.|+++|.|.+ +..-..|+.
T Consensus 1 l~v~nlp~---------~~t~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP---------DVTEEELRDFFSQ--FGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT---------TSSHHHHHHHHHT--TSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC---------cCCHHHHHHHHHH--hhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35778886 5578999999999 8886 44555533 4488999999987 666666666
No 24
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.24 E-value=26 Score=34.05 Aligned_cols=127 Identities=17% Similarity=0.304 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 240 TISGLVEEEARKKNLLVSNLTNT---IEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRI 316 (432)
Q Consensus 240 Ti~ei~~e~~rk~~~lv~~L~~~---i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I 316 (432)
||+.++.+..+.....-..+... -+.-..+|.-||..|+.......+ -......|...-..+...+.++..+|
T Consensus 52 ~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek----~K~vi~~~k~NEE~Lkk~~~ey~~~l 127 (207)
T PF05010_consen 52 TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK----QKEVIEGYKKNEETLKKCIEEYEERL 127 (207)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56666655544332222222222 233334445555555543333322 23344445444445556666666666
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhh
Q 047081 317 FTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQ 370 (432)
Q Consensus 317 ~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~ 370 (432)
-.+.++...=-.--...|+.-..+++........+-..|...+.+..++..||+
T Consensus 128 ~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 128 KKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE 181 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544444445566666677777777777777777777777655555544
No 25
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.81 E-value=47 Score=36.43 Aligned_cols=95 Identities=24% Similarity=0.281 Sum_probs=46.9
Q ss_pred HHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 047081 320 HENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHN 399 (432)
Q Consensus 320 ~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~ 399 (432)
.++...+|+.+.++|+.+.++|+++...-..-+.....++++ .|.+-+..|.+.+++-+++.-+.--..+=
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~---------~a~lt~~eak~~l~~~~~~~~~~~~~~~~ 169 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER---------ISGLTQEEAKEILLEEVEEEARHEAAKLI 169 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555444333322233333333 56666667888888888877544333333
Q ss_pred HHHHHHHHHhHHhh----hHHHHHhhhc
Q 047081 400 KIIQLEKQLDAKQA----LELEIERLRG 423 (432)
Q Consensus 400 kil~LEkqLd~kQ~----LELEi~qLkG 423 (432)
+-++-|-+..+..+ |-.-||+.-+
T Consensus 170 ~~~~~~~~~~a~~~a~~i~~~aiqr~a~ 197 (514)
T TIGR03319 170 KEIEEEAKEEADKKAKEILATAIQRYAG 197 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333333333 5555665543
No 26
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=87.43 E-value=63 Score=37.68 Aligned_cols=160 Identities=24% Similarity=0.258 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHH-------HH---------HHHHHHHH
Q 047081 259 LTNTIEVKNKHLEEMKERCIETSNFIENL-------MEEKDRLVQGYNEEIKKI-------QL---------SAQYHFQR 315 (432)
Q Consensus 259 L~~~i~~kn~~l~~lE~k~~~~s~sL~~~-------meek~~l~~~~neEi~km-------q~---------~a~~~~~~ 315 (432)
-..+|+.|.+.+.+||-+....+--...+ .|.+.+||-...+|+.+. .+ +.-+|.+.
T Consensus 920 sicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~ke 999 (1424)
T KOG4572|consen 920 SICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKE 999 (1424)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34568888888888887776655544443 355666666655544432 12 23456666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccc------hhhHhHHHHhhhhhHHHHHHHH
Q 047081 316 IFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNS------SLQLATLEQQKADDNVRKLAED 389 (432)
Q Consensus 316 I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~------~l~lA~~EQ~kade~vlkL~e~ 389 (432)
.--++--++++||+++++++.--.|++++++.--.+..+--.+.+=++.+-+ ...+|.+|- +-|+--.-+.++
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~ea-emdeik~~~~ed 1078 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEA-EMDEIKDGKCED 1078 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHh-hhhhhhhhhhhh
Confidence 6677778899999999999999888888887544443332222222232211 122333332 112222222232
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhccc
Q 047081 390 QKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 390 hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L 425 (432)
|-|.....+|+ .-..-|.|--||++|+.++
T Consensus 1079 --rakqkei~k~L----~ehelenLrnEieklndkI 1108 (1424)
T KOG4572|consen 1079 --RAKQKEIDKIL----KEHELENLRNEIEKLNDKI 1108 (1424)
T ss_pred --HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 33333445555 2233466777888887654
No 27
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.74 E-value=29 Score=33.30 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQ 330 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k 330 (432)
++...+.+++..+....+.+..|+..+......+.++-.||+.|...|+.=|...|+.+- --+.-|...|...
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~-------~kn~lLEkKl~~l 155 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTG-------LKNLLLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 556677888888999999999999999999999999999999999999987777776554 3444556666666
Q ss_pred HHHHHHhhhHHHHHH
Q 047081 331 KKELEFLGVDLQKRE 345 (432)
Q Consensus 331 ~~eL~~r~~eL~k~~ 345 (432)
...|+.+..||...-
T Consensus 156 ~~~lE~keaqL~evl 170 (201)
T PF13851_consen 156 SEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777776543
No 28
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.24 E-value=41 Score=34.09 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhcc
Q 047081 384 RKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGT 424 (432)
Q Consensus 384 lkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~ 424 (432)
+-++++-..---.+..++.-||-+||+||-|=-++|+||.-
T Consensus 132 i~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445544444567788889999999999999999999864
No 29
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.07 E-value=96 Score=39.06 Aligned_cols=165 Identities=19% Similarity=0.305 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 047081 256 VSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQG------YNEEIKKI-QLSAQYHFQRIFTEHENFKLQLE 328 (432)
Q Consensus 256 v~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~------~neEi~km-q~~a~~~~~~I~~e~ekl~~eLe 328 (432)
+..|...|..-+..+.-|++...++...+...+-+...|... .+.++..- ...--..+.+.-.+..+|..+|+
T Consensus 1245 ~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1245 IQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777666666666555444322 12222222 11223345555566666666666
Q ss_pred HHHHHHHHhhhHHHHHH-------hhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhh-hHHHHHHHHHHHHHHHHHHH
Q 047081 329 AQKKELEFLGVDLQKRE-------AKNENDRKALAEEIEKNAMRNSSLQLATLEQQKAD-DNVRKLAEDQKIEKEELHNK 400 (432)
Q Consensus 329 ~k~~eL~~r~~eL~k~~-------~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kad-e~vlkL~e~hkreKe~~~~k 400 (432)
++-+.+..=.+.++... -.-..+++.+..+++.-...+..|- +++..+.|. ..+...-..|.-..+....|
T Consensus 1325 ~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~-~~~~e~~~q~~el~~~~~~~~~~~e~t~rk 1403 (1822)
T KOG4674|consen 1325 EKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLA-AALSEKNAQELELSDKKKAHELMQEDTSRK 1403 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544444444333 2233445555555544333333332 333333333 33444444444444444444
Q ss_pred HHHHHHHHhHHhhhHHHHHhhhccc
Q 047081 401 IIQLEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 401 il~LEkqLd~kQ~LELEi~qLkG~L 425 (432)
.-.+.+.+. |.-||+.|+..|
T Consensus 1404 ~e~~~~k~~----~~~e~~sl~eeL 1424 (1822)
T KOG4674|consen 1404 LEKLKEKLE----LSEELESLKEEL 1424 (1822)
T ss_pred HHHHHHHHh----HHHHHHHHHHHH
Confidence 444444443 445555555544
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.06 E-value=89 Score=37.84 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=42.7
Q ss_pred chhhhhhhcc-CCCChHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH
Q 047081 227 IIGEHLRKNR-DLKTISGLVEEEAR----KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENL 287 (432)
Q Consensus 227 ~iG~~LrK~g-dLKTi~ei~~e~~r----k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~ 287 (432)
.|++||-..+ |.-||.++.++-.. -+-.+|.+|+.+|..--..|..++..++.|---+.|+
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4788887665 77777777666554 4566788888888877777777777777766555443
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.88 E-value=85 Score=37.44 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 047081 382 NVRKLAEDQKIEKEELHNKIIQLEKQLDAKQ 412 (432)
Q Consensus 382 ~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ 412 (432)
.|..=+.+-+.++..+..+|++|.+.+...+
T Consensus 426 ~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 426 EVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666677788888888776655
No 32
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=85.62 E-value=1.2 Score=33.98 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=42.2
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCC-CcceeeecCCCC-CceeEEEEeCCCccchHHHHhhHh
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLH-PTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~-p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
+.|-|+|. +.+...|.+.|+. |. +.++....++.| .+|+|+|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~---------~~~~~~l~~~f~~--~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPP---------STTEEDLRNFFSR--FGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTT---------T--HHHHHHHCTT--SSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 45778886 4577889998988 64 467777777665 5899999996 6667777777654
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.54 E-value=79 Score=36.80 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=3.5
Q ss_pred eeccCCCCC
Q 047081 41 FTCPYCPKK 49 (432)
Q Consensus 41 ~~CP~C~~~ 49 (432)
|.|.+=|++
T Consensus 25 ~~~i~G~NG 33 (1164)
T TIGR02169 25 FTVISGPNG 33 (1164)
T ss_pred eEEEECCCC
Confidence 444433333
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.26 E-value=95 Score=37.45 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHHH
Q 047081 257 SNLTNTIEVKNKHLEEMKERCIETSNFIEN 286 (432)
Q Consensus 257 ~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~ 286 (432)
..+.+.++..+.++..|..++.......+.
T Consensus 355 ~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~ 384 (1201)
T PF12128_consen 355 PEWRNELENLQEQLDLLTSKHQDIESKYNK 384 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 35
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.14 E-value=75 Score=35.38 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=40.5
Q ss_pred hhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 047081 228 IGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIE 279 (432)
Q Consensus 228 iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~ 279 (432)
.+.|++---+ .+++..|-..+-.++...++++|+...+...+|+.++++
T Consensus 205 Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e 253 (581)
T KOG0995|consen 205 YTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINE 253 (581)
T ss_pred HHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655433 788999999999999999999999999999999888884
No 36
>PTZ00121 MAEBL; Provisional
Probab=83.50 E-value=1.3e+02 Score=37.52 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHH
Q 047081 289 EEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQK 343 (432)
Q Consensus 289 eek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k 343 (432)
+|...|-..-.+|.+..|..--+.+.+++.+-.+.+.+-..+..+-..+..+|-+
T Consensus 1573 eE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk~E~~kk 1627 (2084)
T PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627 (2084)
T ss_pred hhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666655666777777666665554444444444444433
No 37
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=83.14 E-value=92 Score=35.62 Aligned_cols=100 Identities=25% Similarity=0.284 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 325 LQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQL 404 (432)
Q Consensus 325 ~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~L 404 (432)
..|-+.-..+..+.+.|++...-......++..|... ++.+.-..++---++.+.++.=+-+.+..++++-++
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~-------~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTT-------LTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777777777777777766654 345555555666778888888888888888888888
Q ss_pred HHHHhHH-----------hhhHHHHHhhhccccccccc
Q 047081 405 EKQLDAK-----------QALELEIERLRGTSKCDEAH 431 (432)
Q Consensus 405 EkqLd~k-----------Q~LELEi~qLkG~L~Vmk~~ 431 (432)
+.++.+. +.||-|+++|+++|.-++..
T Consensus 586 ~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 586 QEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8777653 56888999999998876643
No 38
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.29 E-value=95 Score=35.32 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 047081 256 VSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQG 297 (432)
Q Consensus 256 v~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~ 297 (432)
...+.+.+......|......+.+....|....++++.|...
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~ 218 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADS 218 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444555555666666666666666676666666655543
No 39
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=82.04 E-value=51 Score=31.94 Aligned_cols=133 Identities=17% Similarity=0.299 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 047081 248 EARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQL 327 (432)
Q Consensus 248 ~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eL 327 (432)
..-..++.+..|...|...+++.+..|..|......|+ +.|..|++.++...--++ +.+.-...|+. +
T Consensus 13 ~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR----------~ElI~ELkqsKklydnYY-kL~~KY~~LK~-~ 80 (196)
T PF15272_consen 13 QLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLR----------QELINELKQSKKLYDNYY-KLYSKYQELKK-S 80 (196)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-H
Confidence 34467888999999999999998888888887665554 566666666655433322 33444444443 2
Q ss_pred HHHHHHHHHhhhHHHHH----HhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047081 328 EAQKKELEFLGVDLQKR----EAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQ 403 (432)
Q Consensus 328 e~k~~eL~~r~~eL~k~----~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~ 403 (432)
..+-..|..++..|++. .+..+...+.+.+++-. + .-....|..+.++++..+-.+|-+
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~---------~--------~~r~~el~~~r~~e~~~YesRI~d 143 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLS---------L--------ELRNKELQNERERERIAYESRIAD 143 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------H--------HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 23333333444333322 22222233333322211 1 222345667788999999999999
Q ss_pred HHHHHh
Q 047081 404 LEKQLD 409 (432)
Q Consensus 404 LEkqLd 409 (432)
||.+|.
T Consensus 144 LE~~L~ 149 (196)
T PF15272_consen 144 LERQLN 149 (196)
T ss_pred HHHHHH
Confidence 999987
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.72 E-value=1e+02 Score=35.20 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhccc
Q 047081 383 VRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 383 vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L 425 (432)
++.-.-+-|||-|.+...|.+- |.||..||.+|
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~----------d~ei~~lk~ki 652 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKK----------DKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 4444566677777776666544 55677777665
No 41
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.48 E-value=95 Score=34.63 Aligned_cols=95 Identities=26% Similarity=0.269 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 047081 256 VSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELE 335 (432)
Q Consensus 256 v~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~ 335 (432)
+.+++..|+.+++-+-.+++..+......... .+|-+..+..++-+++....+.-.+.+.+...|.+.+
T Consensus 448 ~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~-----------k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~ 516 (581)
T KOG0995|consen 448 FSNKASTIEEKIQILGEIELELKKAESKYELK-----------KEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAE 516 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544444444332222222 2344455566666666666666666666666666554
Q ss_pred Hh----hhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 336 FL----GVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 336 ~r----~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
.+ ..+|+...+..+.+|+++..+..-
T Consensus 517 ~~v~s~e~el~~~~~~~~eer~ki~~ql~~ 546 (581)
T KOG0995|consen 517 ELVKSIELELDRMVATGEEERQKIAKQLFA 546 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 456677777778888888766554
No 42
>PRK12704 phosphodiesterase; Provisional
Probab=81.20 E-value=92 Score=34.27 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=29.6
Q ss_pred hHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh----hHHHHHhhhc
Q 047081 370 QLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA----LELEIERLRG 423 (432)
Q Consensus 370 ~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~----LELEi~qLkG 423 (432)
..|.+-+..|.+.+++-+++.-+.--..+=+-++-|.+..+.++ |-.-||+.-+
T Consensus 146 ~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 146 RISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAA 203 (520)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35666677788888888887754333333333333333344333 5555555443
No 43
>PRK00106 hypothetical protein; Provisional
Probab=80.76 E-value=98 Score=34.32 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=29.8
Q ss_pred hHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh----hHHHHHhhhc
Q 047081 370 QLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA----LELEIERLRG 423 (432)
Q Consensus 370 ~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~----LELEi~qLkG 423 (432)
..|.+-+..|.+.+|+-+++.-+.--..+-+-.+-|-+..+.++ +-.-||+.-+
T Consensus 161 ~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~ 218 (535)
T PRK00106 161 RVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAG 218 (535)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35666667788888888877654333333333333434444443 5555665543
No 44
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.66 E-value=1.4e+02 Score=35.95 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=14.4
Q ss_pred CCCccccchhhHHHHHHhcCCCCc
Q 047081 133 DGRSVGESGSKLKDELIRRGLHPT 156 (432)
Q Consensus 133 dg~~~G~s~~~L~~~l~~~GF~p~ 156 (432)
||..+ +-..+.+-|...|+.+.
T Consensus 115 Ng~~~--~~~dI~~l~~~~gi~~~ 136 (1163)
T COG1196 115 NGEKV--RLKDIQDLLADSGIGKE 136 (1163)
T ss_pred CCcEe--eHHHHHHHHHhcCCCCC
Confidence 55544 45578888888666553
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.13 E-value=59 Score=35.31 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hHHhhhH
Q 047081 385 KLAEDQKIEKEELHNKIIQLEKQL-------DAKQALE 415 (432)
Q Consensus 385 kL~e~hkreKe~~~~kil~LEkqL-------d~kQ~LE 415 (432)
++-|-.++..-..-.+|..|+.|| ++.|+|.
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh
Confidence 333344445555566777788775 7888884
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.82 E-value=1.5e+02 Score=35.85 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=8.6
Q ss_pred cccchhhHHHHHHhcCCCC
Q 047081 137 VGESGSKLKDELIRRGLHP 155 (432)
Q Consensus 137 ~G~s~~~L~~~l~~~GF~p 155 (432)
.+.+..++...+...|...
T Consensus 119 ~~~~~~e~~r~~~~~gv~~ 137 (1201)
T PF12128_consen 119 QALSMWELIRELRRKGVQV 137 (1201)
T ss_pred ccccHHHHHHHHHhCCCee
Confidence 3444444444455544333
No 47
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.67 E-value=60 Score=31.19 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHh-hcHHHHHHHHHHH
Q 047081 289 EEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREA-KNENDRKALAEEI 359 (432)
Q Consensus 289 eek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~-~~~~er~kl~~e~ 359 (432)
.+--++++.|++||+..+...|..-..+-. .++--.+.+..+..+....+.|.++.. .|=.+|.+|....
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~-~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL 127 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERE-LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKL 127 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 445688999999999999998887666544 444445667777777777788888765 5556677775544
No 48
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=79.54 E-value=89 Score=34.73 Aligned_cols=50 Identities=26% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 312 HFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 312 ~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
+++.|..+++....+=+.+..+-+.|-.-=.++.++-+..|++.++++++
T Consensus 198 el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~ 247 (591)
T KOG2412|consen 198 ELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAEL 247 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888765444333333333333333334445555566666655544
No 49
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.50 E-value=43 Score=38.55 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=6.7
Q ss_pred HHHHhcC-CCCcc
Q 047081 146 DELIRRG-LHPTR 157 (432)
Q Consensus 146 ~~l~~~G-F~p~k 157 (432)
-.++..| |.|..
T Consensus 351 ~~maq~G~~vpa~ 363 (782)
T PRK00409 351 ALMAKSGLPIPAN 363 (782)
T ss_pred HHHHHhCCCcccC
Confidence 3466667 55543
No 50
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.50 E-value=1.4e+02 Score=35.46 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=43.5
Q ss_pred cchhhhhhhccCCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 047081 226 NIIGEHLRKNRDLKTISGLVEEEARKK-NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDR 293 (432)
Q Consensus 226 ~~iG~~LrK~gdLKTi~ei~~e~~rk~-~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~ 293 (432)
+-|++| ..|.+|+=+++.+.--. ..|+.++. .+.......+.||..|+..+..|.++-.+.++
T Consensus 150 DkV~EF----a~L~pi~LL~eTekAig~~~ll~~h~-eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~ 213 (1072)
T KOG0979|consen 150 DKVKEF----ARLSPIELLVETEKAIGAEELLQYHI-ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDK 213 (1072)
T ss_pred HHHHHH----HcCChHHHHHHHHHhcCchhhHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 557777 56778887776655533 33555554 45567788888888888888888887766543
No 51
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=78.66 E-value=1.4e+02 Score=34.83 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 047081 306 QLSAQYHFQRIFTEHENFKLQLEAQ 330 (432)
Q Consensus 306 q~~a~~~~~~I~~e~ekl~~eLe~k 330 (432)
|+.+..++.+.....+++-..|+++
T Consensus 891 q~~~~~~~d~~~~~~e~~~~~l~sk 915 (1259)
T KOG0163|consen 891 QREMNSEYDVAVKNYEKLVKRLDSK 915 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555555555555555553
No 52
>smart00362 RRM_2 RNA recognition motif.
Probab=78.51 E-value=5.8 Score=28.65 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=33.9
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCC
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~ 178 (432)
++|-|+|. +.+..+|.+.|.. |.+. .+....++..+.|++.|.|...
T Consensus 2 v~i~~l~~---------~~~~~~l~~~~~~--~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP---------DVTEEDLKELFSK--FGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC---------cCCHHHHHHHHHh--cCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 56778875 3467889999998 7764 4444545545789999999864
No 53
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.80 E-value=1.5e+02 Score=34.81 Aligned_cols=25 Identities=4% Similarity=0.259 Sum_probs=17.2
Q ss_pred HhhhHHHHHHhhhcCCceEeecCCe
Q 047081 16 MVDYEDRSYEKLKSGNYNVKISDET 40 (432)
Q Consensus 16 i~~y~~~~Y~~Lk~g~~~vk~~~~~ 40 (432)
|+.+....|..+.+-.+.-..+.|+
T Consensus 161 ll~lq~~vF~s~~s~r~~s~t~qgq 185 (980)
T KOG0980|consen 161 LLELQQTVFSSMNSSRWVSLTPQGQ 185 (980)
T ss_pred HHHHHHHHHHHhhhccccccCCCcc
Confidence 3457888888888876655556664
No 54
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.02 E-value=72 Score=30.65 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=5.4
Q ss_pred hHHHHHhhhccc
Q 047081 414 LELEIERLRGTS 425 (432)
Q Consensus 414 LELEi~qLkG~L 425 (432)
|..||+.|+.+|
T Consensus 176 l~~ei~~L~~kl 187 (194)
T PF15619_consen 176 LQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 55
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=76.54 E-value=1.2e+02 Score=35.35 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=6.5
Q ss_pred cceeeecccC
Q 047081 211 GLYGWVARSD 220 (432)
Q Consensus 211 ~LYGw~Arad 220 (432)
..-||++|.-
T Consensus 822 ~~Rg~L~rkr 831 (1259)
T KOG0163|consen 822 IARGYLARKR 831 (1259)
T ss_pred HHHHHHHHhh
Confidence 4557777764
No 56
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.89 E-value=72 Score=32.37 Aligned_cols=104 Identities=24% Similarity=0.282 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhH
Q 047081 292 DRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQL 371 (432)
Q Consensus 292 ~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~l 371 (432)
..||..|..-...|+.-.++ .-..--.+..+||+++..|+.|-+.|. +++.|-+.+.+.-|-...-.+.|-
T Consensus 19 k~l~~~ykq~f~~~reEl~E----FQegSrE~EaelesqL~q~etrnrdl~-----t~nqrl~~E~e~~Kek~e~q~~q~ 89 (333)
T KOG1853|consen 19 KLLHHEYKQHFLQMREELNE----FQEGSREIEAELESQLDQLETRNRDLE-----TRNQRLTTEQERNKEKQEDQRVQF 89 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665544443333222 222333456778888888888777765 344566666665555445556666
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047081 372 ATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLD 409 (432)
Q Consensus 372 A~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd 409 (432)
+..+.+-.|+.. .-+-.||.+++.|-+||+--|
T Consensus 90 y~q~s~Leddls-----qt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 90 YQQESQLEDDLS-----QTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcc
Confidence 655554444332 123456777777777776543
No 57
>smart00030 CLb CLUSTERIN Beta chain.
Probab=74.73 E-value=22 Score=34.62 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQAL 414 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~L 414 (432)
..++|+-.|+-|++||+|++...+.|++|.++|.+
T Consensus 45 h~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~v 79 (206)
T smart00030 45 RKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGV 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999875
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.41 E-value=2.1e+02 Score=34.33 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=19.8
Q ss_pred ccchhhHHHHHHhcCCCCcceeeecCCCCCce
Q 047081 138 GESGSKLKDELIRRGLHPTRVQSLWNFRGHSG 169 (432)
Q Consensus 138 G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g 169 (432)
-++.++-.. |-..|..|.-|+-+|-.+|..-
T Consensus 602 iEdk~Ea~~-~m~s~~~p~n~~~aytldg~~~ 632 (1074)
T KOG0250|consen 602 IEDKKEARE-FMQSDKPPANVTKAYTLDGRQI 632 (1074)
T ss_pred ecchHHHHH-HHhcCCCCccceeeeccCcccc
Confidence 344455555 5443344899999998888653
No 59
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.39 E-value=1e+02 Score=35.62 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 243 GLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQ 310 (432)
Q Consensus 243 ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~ 310 (432)
++..++....+.++..|..+...-.+...+++....+.....+...++.+++.+...+.+++.++.|+
T Consensus 509 ~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~ 576 (782)
T PRK00409 509 KLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576 (782)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667777777766655555555555555554444444444444444444444433333333
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.15 E-value=1.2e+02 Score=31.30 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhh-hHHHHHhhhccc
Q 047081 390 QKIEKEELHNKIIQLEKQLDAKQA-LELEIERLRGTS 425 (432)
Q Consensus 390 hkreKe~~~~kil~LEkqLd~kQ~-LELEi~qLkG~L 425 (432)
-+.+|.++...|.++|+.++..+. =--||..|+-++
T Consensus 244 ~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~ 280 (312)
T smart00787 244 LTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344555566666666665544322 223444444433
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.88 E-value=2.2e+02 Score=34.29 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=21.7
Q ss_pred eeecCCCCCceeEEEEeCCCccchHHHHhhHhhhhhccCChhhh
Q 047081 159 QSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDW 202 (432)
Q Consensus 159 ~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~~Gr~dW 202 (432)
+-+|. .|.+-| ..++.-..++ .++..|..-|.|+...
T Consensus 102 Rri~r-~g~S~Y---~INg~~~~~~---dI~~l~~~~gi~~~~~ 138 (1163)
T COG1196 102 RRIYR-DGESEY---YINGEKVRLK---DIQDLLADSGIGKESY 138 (1163)
T ss_pred EEEEE-cCCcEE---EECCcEeeHH---HHHHHHHhcCCCCCCC
Confidence 44555 454433 3455555555 5667788778877666
No 62
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.94 E-value=1.8e+02 Score=32.61 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDR 293 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~ 293 (432)
.-...|..|..+|+.....++.+...+.++...+..+..++..
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~ 374 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEE 374 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666665555555555555444444433
No 63
>PHA02540 61 DNA primase; Provisional
Probab=70.45 E-value=0.85 Score=47.24 Aligned_cols=124 Identities=12% Similarity=0.159 Sum_probs=67.4
Q ss_pred eeeccCCCCCCcc----ccCcHH----HHhhhhccCCCCc-cChHHHHhHHHHHHHHHhhccCCCCCCCCCCC-CCCCC-
Q 047081 40 TFTCPYCPKKRKH----DYLYKD----LLQHASGIGNSSK-RSAKEKANHLALAKFLETDLSDVGSQSKPVNG-VDPLN- 108 (432)
Q Consensus 40 ~~~CP~C~~~kk~----~y~~~~----LlqHA~gvg~~~~-r~ak~ka~HlaLak~L~~dl~~~~~~~~~~~~-~~p~~- 108 (432)
.++||||+.+.++ .+.+.+ ++=|-+|-|++.+ =+---...|+.+-.||+......+...+.+.. ..+..
T Consensus 27 ~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~Flme~e~lsf~Eav~~la~~~g~~~~~~~~~~~~~~~ 106 (337)
T PHA02540 27 NFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNFLKDYEPDLYREYIMERFKERGTGKGRPVPKPKFEFK 106 (337)
T ss_pred EecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHHHHHhcCCChHHHHHHHHHHhCCccccCCCCCChhHH
Confidence 5899999986432 333333 3448888774432 11123467788888888877766533222100 01100
Q ss_pred CCCCCeeeccceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 109 VCSDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 109 ~~~de~~VWPwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
+.....=.|+++-.+.+++ .+..-.++|..+|+.+..+..+ -|..+|.++.+.+.
T Consensus 107 ~~~~~~~~~~~~~~l~~l~------------~~~~a~~YL~~RGi~~~~~~~~------------~~~~~~~~l~~~l~ 161 (337)
T PHA02540 107 KEKKVIEKLPFCERLDTLP------------EDHPIIKYVENRCIPKDKWKLL------------YFTREWQKLVNSIK 161 (337)
T ss_pred HHHHHHHHHHHHHHHHhCc------------ccHHHHHHHHHcCCCHHHHHhc------------CCCccHHHHHHHHh
Confidence 0000011244443333333 2344588999999999865432 25667888877654
No 64
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=70.30 E-value=2.1e+02 Score=33.12 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=9.1
Q ss_pred chhhHHHHHHhcCCCC
Q 047081 140 SGSKLKDELIRRGLHP 155 (432)
Q Consensus 140 s~~~L~~~l~~~GF~p 155 (432)
+...+.+.|...|+.|
T Consensus 120 ~~~~~~~~l~~~~i~~ 135 (1179)
T TIGR02168 120 RLKDIQDLFLDTGLGK 135 (1179)
T ss_pred cHHHHHHHHhccCCCc
Confidence 3345666677755554
No 65
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.29 E-value=2.2e+02 Score=33.14 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 047081 244 LVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQ---LSAQYHFQRIFTEH 320 (432)
Q Consensus 244 i~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq---~~a~~~~~~I~~e~ 320 (432)
.+..-.+.-.++-..|-.+|...++.|..+ ..-+..|.+++.+|.+++..-.++-..-. ....--++-+-.+|
T Consensus 75 ~~~~~s~e~e~~~~~le~~l~e~~~~l~~~----~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken 150 (769)
T PF05911_consen 75 AVAKKSKEWEKIKSELEAKLAELSKRLAES----AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN 150 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333444444444445555555544443 22234455556666666655555322221 12333556677888
Q ss_pred HhhHHHHHHHHHHHHHhhhHHH
Q 047081 321 ENFKLQLEAQKKELEFLGVDLQ 342 (432)
Q Consensus 321 ekl~~eLe~k~~eL~~r~~eL~ 342 (432)
--|+.+|-..-+||+.|..+.+
T Consensus 151 ~~Lkye~~~~~keleir~~E~~ 172 (769)
T PF05911_consen 151 SSLKYELHVLSKELEIRNEERE 172 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987766
No 66
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.18 E-value=1.7e+02 Score=31.96 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHhhHHHHHH-----HHHHHHHhhhHHHHHHh
Q 047081 301 EIKKIQLSAQYHFQRI---FTEHENFKLQLEA-----QKKELEFLGVDLQKREA 346 (432)
Q Consensus 301 Ei~kmq~~a~~~~~~I---~~e~ekl~~eLe~-----k~~eL~~r~~eL~k~~~ 346 (432)
.|++|.+.-+--.++| ...+++|+++|+. .+..+..|.+++..-..
T Consensus 346 ~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniR 399 (521)
T KOG1937|consen 346 RIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIR 399 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHH
Confidence 3444544444344444 4888999999986 37788888888887554
No 67
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=68.90 E-value=95 Score=28.49 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLM-EEKDRLVQGYNEEIKKIQLSAQYHFQ 314 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~m-eek~~l~~~~neEi~kmq~~a~~~~~ 314 (432)
..+|.++...........+.-+..|++++.+|++++ .-.+...-++-..|+-+|..-+...+
T Consensus 56 ~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ 118 (146)
T PF08702_consen 56 FEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQ 118 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH
Confidence 333444443333333333444445555555555555 44444455555555544444333333
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.70 E-value=2.8e+02 Score=33.84 Aligned_cols=25 Identities=12% Similarity=0.479 Sum_probs=15.6
Q ss_pred CCeeeccCCCCCCccccCcHHHHhh
Q 047081 38 DETFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 38 ~~~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
...=.||.|.++.+.+=...+++.+
T Consensus 675 ~~~~~C~LC~R~f~~eee~~~f~~~ 699 (1311)
T TIGR00606 675 ENQSCCPVCQRVFQTEAELQEFISD 699 (1311)
T ss_pred ccCCcCCCCCCCCCChhHHHHHHHH
Confidence 4445899999876543334566654
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.44 E-value=1.2e+02 Score=29.50 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhHH
Q 047081 396 ELHNKIIQLEKQLDAK 411 (432)
Q Consensus 396 ~~~~kil~LEkqLd~k 411 (432)
....++..|+.++..+
T Consensus 130 ~~~~~l~~l~~~l~~~ 145 (302)
T PF10186_consen 130 ERKQRLSQLQSQLARR 145 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444433
No 70
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=67.75 E-value=3.8 Score=24.59 Aligned_cols=20 Identities=40% Similarity=0.678 Sum_probs=12.9
Q ss_pred eeccCCCCCCccccCcHHHHhhh
Q 047081 41 FTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 41 ~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
|.||+|+.. +-...+|.+|-
T Consensus 1 ~~C~~C~~~---~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKS---FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-E---ESSHHHHHHHH
T ss_pred CCCcCCCCc---CCcHHHHHHHH
Confidence 789999853 34677777774
No 71
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.25 E-value=96 Score=27.90 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=16.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHh
Q 047081 315 RIFTEHENFKLQLEAQKKELEFLGVDLQKREA 346 (432)
Q Consensus 315 ~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~ 346 (432)
+.-..+++|+.+++...+++..-......+..
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666555544444443333
No 72
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=66.76 E-value=2.2e+02 Score=31.82 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 047081 282 NFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEF 336 (432)
Q Consensus 282 ~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~ 336 (432)
.+.+-++++-.-+.+.|..||+..+..++...- -+..+-.+.+|...++++.+
T Consensus 204 n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~~F~~eL~~Ai~eiRa 256 (546)
T KOG0977|consen 204 NRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNREYFKNELALAIREIRA 256 (546)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHH
Confidence 344556667777788888888888877766551 23334445666666666554
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.58 E-value=3.1e+02 Score=32.91 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKK 332 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~ 332 (432)
...+.+++..|+....++..+.++++.+...+...-++...|.++--.+|-.--+.-.+.....-.++-+...-|..+..
T Consensus 243 ~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~ 322 (1174)
T KOG0933|consen 243 EEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKE 322 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777776666666555555554443333332222222233333333333444444444
Q ss_pred HHHHhhhHHHHHHhhcHHHHHHH
Q 047081 333 ELEFLGVDLQKREAKNENDRKAL 355 (432)
Q Consensus 333 eL~~r~~eL~k~~~~~~~er~kl 355 (432)
.|+--.+.+.+..-.-..+|++|
T Consensus 323 tl~~e~~k~e~i~~~i~e~~~~l 345 (1174)
T KOG0933|consen 323 TLNGEEEKLEEIRKNIEEDRKKL 345 (1174)
T ss_pred HHhhhHHHHHHHHHhHHHHHHHH
Confidence 44444444444444334444444
No 74
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=63.98 E-value=16 Score=30.02 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHh
Q 047081 304 KIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREA 346 (432)
Q Consensus 304 kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~ 346 (432)
.+++.+-++.+.++.+|..|+.++++..++|....+.|.+.+.
T Consensus 29 ~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 29 RLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888999999999999999999999999999988764
No 75
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.69 E-value=1.1e+02 Score=27.12 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHh
Q 047081 310 QYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKN 362 (432)
Q Consensus 310 ~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn 362 (432)
-..+..+-.+...++.++..-..+.+.-...|+..++.-+.++..|+.++...
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~ 110 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSEL 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666677777777777777777776654
No 76
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.58 E-value=1.8e+02 Score=33.63 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 047081 307 LSAQYHFQRIFTEHENFKLQLEAQKKELE 335 (432)
Q Consensus 307 ~~a~~~~~~I~~e~ekl~~eLe~k~~eL~ 335 (432)
+.|++..++|+.+- +.+++...++|.
T Consensus 564 ~~a~~ea~~~~~~a---~~~~~~~i~~lk 589 (771)
T TIGR01069 564 LELEKEAQEALKAL---KKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444444443333 445555555544
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=62.51 E-value=14 Score=39.90 Aligned_cols=66 Identities=27% Similarity=0.392 Sum_probs=47.5
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHhhHhhhhhcc
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAFEKSFEADH 196 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~ 196 (432)
+.|.|||. |=+| +.|++-+++++=...-|..|....| .+|++||+|. +-.+.+-|+.--+-|+..+
T Consensus 47 vfItNIpy----d~rW-----qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk-~~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 47 VFITNIPY----DYRW-----QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFK-DPENVQKALEKLNKYEVNG 113 (608)
T ss_pred EEEecCcc----hhhh-----HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEee-CHHHHHHHHHHhhhccccC
Confidence 66999998 4455 3578888886655666777888888 8899999995 4556666666556666544
No 78
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.14 E-value=3.4e+02 Score=32.51 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=12.9
Q ss_pred HHHHHHhhccCCCCCCCCC
Q 047081 83 LAKFLETDLSDVGSQSKPV 101 (432)
Q Consensus 83 Lak~L~~dl~~~~~~~~~~ 101 (432)
++-++|--|||.+....++
T Consensus 58 iVcAIcLglgG~Pk~lGRa 76 (1072)
T KOG0979|consen 58 IVCAICLGLGGKPKLLGRA 76 (1072)
T ss_pred HHHHHHHHcCCChhhccch
Confidence 5677888888876555443
No 79
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.45 E-value=1.9e+02 Score=29.35 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=79.1
Q ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 233 RKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYH 312 (432)
Q Consensus 233 rK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~ 312 (432)
.|.+|||.+..+..+-...--.|.+-|...++.+..+...+-.-... ..++ +....--..+...-+..+..
T Consensus 114 ~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~--~~iE-------~~l~~ai~~~~~~~~~~~~~ 184 (267)
T PF10234_consen 114 SKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLEL--NEIE-------KALKEAIKAVQQQLQQTQQQ 184 (267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCH--HHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999988899999998888887776665321111 1122 22222222222222334455
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHH---HHHHHHHHHHH
Q 047081 313 FQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNEN---DRKALAEEIEK 361 (432)
Q Consensus 313 ~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~---er~kl~~e~~k 361 (432)
+..+-.+--.|...++.++.||++-.|.|.-++.-.+. |-.+|++|+++
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 66677788889999999999999999999988764442 34455555554
No 80
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.32 E-value=3.6e+02 Score=32.43 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=72.0
Q ss_pred eeecccCCCCCCcchhhhhhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Q 047081 214 GWVARSDDHSLNNIIGEHLRKNRDLKT-ISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKD 292 (432)
Q Consensus 214 Gw~AradD~~~~~~iG~~LrK~gdLKT-i~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~ 292 (432)
-++|+..++|+-..=|+...+.|-|.- +-|- .+.-+..++| +..-...+.+|+.++++ +++++++.+
T Consensus 631 ~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~-------krsrLe~~k~-~~~~~~~~~~l~~~L~~----~r~~i~~~~ 698 (1200)
T KOG0964|consen 631 LRLAKKHELNCITLSGDQVSKKGVLTGGYEDQ-------KRSRLELLKN-VNESRSELKELQESLDE----VRNEIEDID 698 (1200)
T ss_pred HHHHHhcCCCeEEeccceecccCCccccchhh-------hhhHHHHHhh-hHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 368999999997778899999988863 3332 1122344443 23445566777777776 678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHhhhHHHHHH
Q 047081 293 RLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQK-------KELEFLGVDLQKRE 345 (432)
Q Consensus 293 ~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~-------~eL~~r~~eL~k~~ 345 (432)
.-+...+-+|++.+- ....++.+++.|+.++-... ..+.-..++|....
T Consensus 699 ~~i~q~~~~~qk~e~----~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~ 754 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVEN----DRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK 754 (1200)
T ss_pred HHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Confidence 777777777665543 23344455555555554433 34555556666544
No 81
>PRK12705 hypothetical protein; Provisional
Probab=61.10 E-value=2.6e+02 Score=30.85 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHH-HHHHHHHHHH
Q 047081 326 QLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQK-IEKEELHNKI 401 (432)
Q Consensus 326 eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hk-reKe~~~~ki 401 (432)
.|+.+...|+.+..+|++....-......|++..++ ....--..|.+-+..|.+.+++-+++.= .|.-.+.+++
T Consensus 92 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~ 166 (508)
T PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQ--LDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKI 166 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443333333333322111 1122234666777778888988888664 3444444333
No 82
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=60.85 E-value=1.4e+02 Score=27.50 Aligned_cols=129 Identities=24% Similarity=0.279 Sum_probs=56.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH---hhcHHHH
Q 047081 276 RCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKRE---AKNENDR 352 (432)
Q Consensus 276 k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~---~~~~~er 352 (432)
++..+...|.++-.+++.|.. +.+-+..==..+...-+.++.+++..+.+++....++..=...|..+. ..--+++
T Consensus 4 K~l~v~~kLK~~~~e~dsle~-~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLED-HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544443 222222222223444445555555555554433333333222222222 1223466
Q ss_pred HHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 047081 353 KALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQK-IEKEELHNKIIQLEKQLD 409 (432)
Q Consensus 353 ~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hk-reKe~~~~kil~LEkqLd 409 (432)
..|..+.++...+.+.|...... -.+.|.-+|..+ ..++.+-..+-+|.+||.
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~----~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSS----LENLLQEKEQEKVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666554444444433211 223444444433 344555566666666664
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.79 E-value=3.5e+02 Score=31.81 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=15.6
Q ss_pred ChHHHHhHHHHHHHHHhhccCCCCCCCC
Q 047081 73 SAKEKANHLALAKFLETDLSDVGSQSKP 100 (432)
Q Consensus 73 ~ak~ka~HlaLak~L~~dl~~~~~~~~~ 100 (432)
..+..+.-..||.|||. |+..+-+.|.
T Consensus 243 DGkL~~dEfilam~lie-ma~sGq~lP~ 269 (1118)
T KOG1029|consen 243 DGKLSADEFILAMHLIE-MAKSGQPLPK 269 (1118)
T ss_pred CCcccHHHHHHHHHHHH-HHhcCCCCCC
Confidence 45666677777777764 4444444443
No 84
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=59.58 E-value=2.9e+02 Score=30.86 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=17.6
Q ss_pred HHHHHHhHHhhhHHHHHhhhccccccc
Q 047081 403 QLEKQLDAKQALELEIERLRGTSKCDE 429 (432)
Q Consensus 403 ~LEkqLd~kQ~LELEi~qLkG~L~Vmk 429 (432)
+|+++---+..++..+|-|...|..|+
T Consensus 191 ~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 191 QLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444445677778888877777765
No 85
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=58.26 E-value=21 Score=38.26 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=47.4
Q ss_pred eeccce--EEEeccccccCCCCCccccchhhHHHHHHhcCC-CCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHhh
Q 047081 115 FVWPWI--GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGL-HPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKS 191 (432)
Q Consensus 115 ~VWPwm--gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF-~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~ 191 (432)
.++||. ..|-|+|. -.+...|++.|+.-|. .+..++.+-...+.+|+++|.|.+.-.- ..|+..=++
T Consensus 389 ~~~~ps~~L~v~NLp~---------~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~ 458 (481)
T TIGR01649 389 NIQPPSATLHLSNIPL---------SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNH 458 (481)
T ss_pred ccCCCCcEEEEecCCC---------CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcC
Confidence 467885 45669885 2467889999999554 3566666555556689999999984433 355554444
Q ss_pred hhhcc
Q 047081 192 FEADH 196 (432)
Q Consensus 192 Fe~~~ 196 (432)
+...+
T Consensus 459 ~~l~~ 463 (481)
T TIGR01649 459 HQLNE 463 (481)
T ss_pred CccCC
Confidence 44443
No 86
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=58.07 E-value=3e+02 Score=30.61 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKK--IQLSAQYHFQRIFTEHENFKLQLEAQ 330 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~k--mq~~a~~~~~~I~~e~ekl~~eLe~k 330 (432)
++++..+..++...|...--+..-....+.-|.+.||++-+|......-=.| |-+.-.+-.-.|+........++++.
T Consensus 197 q~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE 276 (596)
T KOG4360|consen 197 QQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAE 276 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444455555555555554445555666677777766555433221111 11111122223444555556677777
Q ss_pred HHHHHHhhhHHHHHHhhcHHHHHHHH
Q 047081 331 KKELEFLGVDLQKREAKNENDRKALA 356 (432)
Q Consensus 331 ~~eL~~r~~eL~k~~~~~~~er~kl~ 356 (432)
.+|++.+-.++..-.+.++.|-++|.
T Consensus 277 ~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 277 LEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888888887777777766664
No 87
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=57.98 E-value=20 Score=35.84 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=38.8
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC--CCCceeEEEEeCCCccch
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF--RGHSGCALVQFNKNWPGL 182 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~gh~g~avv~F~~~w~Gf 182 (432)
.++|-|+|. . .+...|.+.|+. |.++ .|+.++++ ....|+++|.|.+--.-.
T Consensus 271 ~lfV~NL~~-~--------~~e~~L~~~F~~--fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSP-D--------TDETVLWQLFGP--FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCC-C--------CCHHHHHHHHHh--CCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 377889986 2 257889999999 8875 67777765 347899999997754443
No 88
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.55 E-value=4.8e+02 Score=32.72 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLEKQLDAK 411 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LEkqLd~k 411 (432)
++++....+.-...-+++-..+..||.+|...
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666667777777766543
No 89
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.45 E-value=3e+02 Score=30.41 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH---HHHH-HHHH---HHHHHHHHHHHHHHHHHHH
Q 047081 242 SGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENL---MEEK-DRLV---QGYNEEIKKIQLSAQYHFQ 314 (432)
Q Consensus 242 ~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~---meek-~~l~---~~~neEi~kmq~~a~~~~~ 314 (432)
+..++|-.+--++++..+.++|+.+......|+.++.+ .++|... +++| ..|. .-|.-=+..|.+..+...-
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~e-a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g 330 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQE-AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence 34567777788999999999999999999999888877 3444433 2333 1111 1222334455555554432
Q ss_pred ---HHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhc------HHHHHHHHHHHHHhhhccch
Q 047081 315 ---RIFTEHENFKLQLEAQKKELEFLGVDLQKREAKN------ENDRKALAEEIEKNAMRNSS 368 (432)
Q Consensus 315 ---~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~------~~er~kl~~e~~kn~~~~~~ 368 (432)
+.-.+.+....||++.....+.-.+|+.+.-..+ .+||.+|..|..+...+.++
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~ 393 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDK 393 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2223333334444444444444444554433322 24666776666664433333
No 90
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.43 E-value=1.9e+02 Score=28.12 Aligned_cols=112 Identities=22% Similarity=0.179 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH-------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKD-------RLVQGYNEEIKK--IQLSAQYHFQRIFTEHE 321 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~-------~l~~~~neEi~k--mq~~a~~~~~~I~~e~e 321 (432)
....-|+.|.+.|.-....|...+.++..++.+|..+-..-+ .|......--.+ ........+..+..+.+
T Consensus 33 ~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 33 KAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666666666666655543322 111111111111 11223344455556666
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHh
Q 047081 322 NFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKN 362 (432)
Q Consensus 322 kl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn 362 (432)
....+...+..-++......+.+....++--..|++++..-
T Consensus 113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 66666666666666666666666666666666677766553
No 91
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=57.41 E-value=3.9e+02 Score=31.65 Aligned_cols=85 Identities=24% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHH
Q 047081 265 VKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKR 344 (432)
Q Consensus 265 ~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~ 344 (432)
...+.....|.+|+..-.++.....+.-.|...|.+ +.+--..+.. .|+ +.++...+|..+.. ...++....
T Consensus 414 e~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~d-i~kQle~~~~---s~~-~~~~~~~~L~d~le---~~~~~~~~~ 485 (980)
T KOG0980|consen 414 EAENKALAAENRYEKLKEKYTELRQEHADLLRKYDD-IQKQLESAEQ---SID-DVEEENTNLNDQLE---ELQRAAGRA 485 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---hHH-HHHHHHHHHHHHHH---HHHHHHHHH
Confidence 333333344455555555555555554455555443 2221112221 222 44444444443333 333444455
Q ss_pred HhhcHHHHHHHHH
Q 047081 345 EAKNENDRKALAE 357 (432)
Q Consensus 345 ~~~~~~er~kl~~ 357 (432)
++.++..+..++.
T Consensus 486 ~~K~e~~~~~le~ 498 (980)
T KOG0980|consen 486 ETKTESQAKALES 498 (980)
T ss_pred HHhhHHHHHHHHH
Confidence 5555555555443
No 92
>PLN03120 nucleic acid binding protein; Provisional
Probab=57.37 E-value=21 Score=36.01 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=41.1
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCccchHHHHhhHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
++.|-|+|. ..+...|++.|+. |.+. .+.... ...++|++.|.|... .+...|+.|..
T Consensus 6 tVfVgNLs~---------~tTE~dLrefFS~--~G~I~~V~I~~-d~~~~GfAFVtF~d~-eaAe~AllLnG 64 (260)
T PLN03120 6 TVKVSNVSL---------KATERDIKEFFSF--SGDIEYVEMQS-ENERSQIAYVTFKDP-QGAETALLLSG 64 (260)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEee-cCCCCCEEEEEeCcH-HHHHHHHHhcC
Confidence 467889886 3477899999998 6553 444433 234689999999654 77788886554
No 93
>PRK09039 hypothetical protein; Validated
Probab=57.16 E-value=2.4e+02 Score=29.23 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 047081 241 ISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNE 300 (432)
Q Consensus 241 i~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~ne 300 (432)
++....+-.+ .+..|+.|...+...+.....++.........|+-+..+|..|...|..
T Consensus 48 i~~~~~eL~~-L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~ 106 (343)
T PRK09039 48 ISGKDSALDR-LNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106 (343)
T ss_pred HhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444333333 3334666888888888888888888888888888777778777777663
No 94
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=57.12 E-value=1.6e+02 Score=27.04 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 241 ISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLME---EKDRLVQGYNEEIKKIQLSAQYHFQRIF 317 (432)
Q Consensus 241 i~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~me---ek~~l~~~~neEi~kmq~~a~~~~~~I~ 317 (432)
+.++.....+.-++-|..|.+.+..-.............+..+++.-.. .++....+|.+++++|. -...++++
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~---~~~~e~~i 99 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI---IYILETKI 99 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH---HHHHHHHH
Confidence 3455555566666677777777777666666666666666666666553 45678889999989887 22333444
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhHHH
Q 047081 318 TEHENFKLQLEAQKKELEFLGVDLQ 342 (432)
Q Consensus 318 ~e~ekl~~eLe~k~~eL~~r~~eL~ 342 (432)
..++..=..|.+-.+.+..+-..|+
T Consensus 100 ~~~~~~I~~Lq~~~~~~~~ki~~Le 124 (146)
T PF08702_consen 100 INQPSNIRVLQNILRSNRQKIQRLE 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444433444444444444333333
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.07 E-value=1.1e+02 Score=34.51 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 047081 314 QRIFTEHENFKLQLEAQKKELE 335 (432)
Q Consensus 314 ~~I~~e~ekl~~eLe~k~~eL~ 335 (432)
++.-.+|..|+.+|+.++++++
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie 453 (652)
T COG2433 432 ERLEEENSELKRELEELKREIE 453 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 96
>smart00400 ZnF_CHCC zinc finger.
Probab=56.00 E-value=21 Score=26.86 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.7
Q ss_pred hhhcCCceEeecCCeeeccCCCCCCccccCcHHHHhhhhcc
Q 047081 26 KLKSGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGI 66 (432)
Q Consensus 26 ~Lk~g~~~vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~gv 66 (432)
.=++.++.|....+.|+|=.|+. -.+.-+|+++-.++
T Consensus 9 ~d~~pSf~v~~~kn~~~Cf~cg~----gGd~i~fv~~~~~~ 45 (55)
T smart00400 9 GEKTPSFSVSPDKQFFHCFGCGA----GGNVISFLMKYDKL 45 (55)
T ss_pred CCCCCCEEEECCCCEEEEeCCCC----CCCHHHHHHHHHCc
Confidence 34677888998889999999963 35788999998875
No 97
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=55.56 E-value=7 Score=23.90 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=14.1
Q ss_pred eeccCCCCCCccccCcHHHHhhh
Q 047081 41 FTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 41 ~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
|.||.|+.. +..-..|.+|-
T Consensus 1 y~C~~C~~~---f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKS---FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCCCc---cCCHHHHHHHH
Confidence 789999852 44566677774
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=55.20 E-value=25 Score=35.09 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=43.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKS 191 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~ 191 (432)
|++.|-|++. ..+...|++.|+. |.++.-..+....+..|++.|.|.. -.+...|+.|...
T Consensus 6 ~TV~V~NLS~---------~tTE~dLrefFS~--~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAllLnGa 66 (243)
T PLN03121 6 YTAEVTNLSP---------KATEKDVYDFFSH--CGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVLLSGA 66 (243)
T ss_pred eEEEEecCCC---------CCCHHHHHHHHHh--cCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHhcCCC
Confidence 7899999986 3467889999998 7765544455555677899999975 3444677665443
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=5.3 Score=42.21 Aligned_cols=10 Identities=60% Similarity=1.799 Sum_probs=8.6
Q ss_pred eeeccCCCCC
Q 047081 40 TFTCPYCPKK 49 (432)
Q Consensus 40 ~~~CP~C~~~ 49 (432)
+|.|||||.-
T Consensus 374 sfKCPYCP~e 383 (394)
T KOG2817|consen 374 SFKCPYCPVE 383 (394)
T ss_pred eeeCCCCCcc
Confidence 5999999963
No 100
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=54.79 E-value=2.3e+02 Score=28.30 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=54.6
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHH
Q 047081 264 EVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQK 343 (432)
Q Consensus 264 ~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k 343 (432)
....++.++|+.. +..+|..+..+++.+-.+|.+.+..+..... ....++.+|++.+-++.-+..++-....++
T Consensus 83 k~~~~~Aeeln~~---~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~---~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ek 156 (237)
T cd07685 83 QVLRKHAEDLNAG---PLSKLSLLIRDKQQLRKTFSEQWQLLKQEYT---KTTQQDIEKLKSQYRSLAKDSAQAKRKYQE 156 (237)
T ss_pred HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666533 3467777788888988889888776665444 445567888887777776666665555555
Q ss_pred HHhhcHHHHHHHH
Q 047081 344 REAKNENDRKALA 356 (432)
Q Consensus 344 ~~~~~~~er~kl~ 356 (432)
+.++-+++++.
T Consensus 157 --as~~K~~~K~~ 167 (237)
T cd07685 157 --ASKDKDRDKAK 167 (237)
T ss_pred --cccchhHHHHH
Confidence 23444555553
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.55 E-value=3e+02 Score=29.54 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 047081 245 VEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYH------FQRIFT 318 (432)
Q Consensus 245 ~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~------~~~I~~ 318 (432)
.......-...+..+..+++..+.++..++.........++...++-.........++..++....+- +...+.
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~ 258 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALN 258 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Q ss_pred HHHhhHHHHHHHHHHHHHhhhHHHH----------------HHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhH
Q 047081 319 EHENFKLQLEAQKKELEFLGVDLQK----------------REAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDN 382 (432)
Q Consensus 319 e~ekl~~eLe~k~~eL~~r~~eL~k----------------~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~ 382 (432)
.-+.-...+++....++.-..-+.. +-..-...+..|+.++..-......++-..-+-.++...
T Consensus 259 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~ 338 (562)
T PHA02562 259 KLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK 338 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhcccc
Q 047081 383 VRKL----------AEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTSK 426 (432)
Q Consensus 383 vlkL----------~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L~ 426 (432)
+-.+ ++...++...+-++|..|+.. ...++-++.+|..+|.
T Consensus 339 i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~---~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 339 LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE---FVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhchHHHHHHHHHHHH
No 102
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.06 E-value=3.1e+02 Score=29.48 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQ 330 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k 330 (432)
|-..+...|.--|+..-+.-.+|+...-+....|+-..|.+++....-..--.+.|--.-++.+..+.|.-.||.+-++.
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L 361 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSL 361 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555665666666666666666677778888888888877766666666888888889999999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhcHHHHHHHHH
Q 047081 331 KKELEFLGVDLQKREAKNENDRKALAE 357 (432)
Q Consensus 331 ~~eL~~r~~eL~k~~~~~~~er~kl~~ 357 (432)
.++|+.+.++|+.+..+-+-.-.-|+-
T Consensus 362 ~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 362 AKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999998876544444344443
No 103
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=53.15 E-value=1.5e+02 Score=25.54 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLEKQLDA 410 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LEkqLd~ 410 (432)
....++-+++..+.+......|.+|..+|..
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~ 92 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEE 92 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666666666653
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.98 E-value=4.1e+02 Score=30.58 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=37.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 047081 269 HLEEMKERCIETSNFIENLMEEKDRLV---QGYNEEIKKIQLSA---QYHFQRIFTEHENFKLQLEAQKKELEFL 337 (432)
Q Consensus 269 ~l~~lE~k~~~~s~sL~~~meek~~l~---~~~neEi~kmq~~a---~~~~~~I~~e~ekl~~eLe~k~~eL~~r 337 (432)
|+...+--+.+....+..+..++++.+ ....+++..++..| .+-+++|.+-++.|..-++.-++.+..+
T Consensus 552 Yi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~ 626 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQ 626 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444554555444444443322 23334455554444 5667777777777777777766665543
No 105
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=52.59 E-value=7.2 Score=25.25 Aligned_cols=13 Identities=38% Similarity=1.255 Sum_probs=10.7
Q ss_pred ecCCeeeccCCCC
Q 047081 36 ISDETFTCPYCPK 48 (432)
Q Consensus 36 ~~~~~~~CP~C~~ 48 (432)
.++.+|.||+|+.
T Consensus 10 ~~~k~~~C~~C~k 22 (26)
T PF13465_consen 10 TGEKPYKCPYCGK 22 (26)
T ss_dssp SSSSSEEESSSSE
T ss_pred CCCCCCCCCCCcC
Confidence 4678899999974
No 106
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=52.46 E-value=2e+02 Score=28.42 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcH---HHHH
Q 047081 277 CIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNE---NDRK 353 (432)
Q Consensus 277 ~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~---~er~ 353 (432)
|-+.-..|.+||.|+.+.+..--....--..----+-+.|+--..+|..+++.++++++.|..+=.+++.+.+ .|++
T Consensus 120 y~~ak~~~~~~~~ekkkklkKegkpt~ieedDp~lfk~av~~~~mklfae~erkRk~~e~r~~~eRkr~re~eIeaeek~ 199 (250)
T KOG1150|consen 120 YTAAKNRLEKVMSEKKKKLKKEGKPTIIEEDDPELFKQAVYKQVMKLFAELERKRKELEARANEERKRQREEEIEAEEKR 199 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444456777887765433211000000000011122334444445555555555555555555554444433 4677
Q ss_pred HHHHHHHHhhhc
Q 047081 354 ALAEEIEKNAMR 365 (432)
Q Consensus 354 kl~~e~~kn~~~ 365 (432)
|++.|-+||=.+
T Consensus 200 Kr~~E~qKnfEE 211 (250)
T KOG1150|consen 200 KREREWQKNFEE 211 (250)
T ss_pred HHHHHHHHHHHH
Confidence 888888887544
No 107
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.16 E-value=2.5e+02 Score=27.80 Aligned_cols=25 Identities=12% Similarity=0.420 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 292 DRLVQGYNEEIKKIQLSAQYHFQRI 316 (432)
Q Consensus 292 ~~l~~~~neEi~kmq~~a~~~~~~I 316 (432)
++.+..|..||..+.+--..|++.+
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555444
No 108
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.97 E-value=4.7e+02 Score=30.95 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhhhHHHH
Q 047081 281 SNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLE-AQKKELEFLGVDLQK 343 (432)
Q Consensus 281 s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe-~k~~eL~~r~~eL~k 343 (432)
..-|.+-+.+++.+...-++|+...+|....--++|-+...=|..+-- -..+.++.||.-|+.
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666778888888888888888766655555544433332211 123345556655553
No 109
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=51.89 E-value=24 Score=35.13 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=53.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCC-CCcceeeecCCCC-CceeEEEEeCCCccchHHHHhhHhhhhhcc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGL-HPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAFEKSFEADH 196 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF-~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~ 196 (432)
.++|-|.++ |.....|++-|.. | .+.+|-.-|++.| -.|++-|.|...-.++.--..|+. |..+|
T Consensus 85 ~v~v~NL~~---------~V~~~Dl~eLF~~--~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG 151 (243)
T KOG0533|consen 85 KVNVSNLPY---------GVIDADLKELFAE--FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDG 151 (243)
T ss_pred eeeeecCCc---------CcchHHHHHHHHH--hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCC
Confidence 467888887 6778889999999 7 8889999999988 679999999998887777777777 66554
No 110
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=51.26 E-value=1.3e+02 Score=27.29 Aligned_cols=83 Identities=29% Similarity=0.336 Sum_probs=49.1
Q ss_pred HhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 047081 321 ENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNK 400 (432)
Q Consensus 321 ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~k 400 (432)
+++..+|.+....++.-|.+|+- +-+++..|..+.. .-+.+.+.+ .=..|+...+.+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLef-------q~kr~~~e~~~~~----~~~~~~i~~------------q~~~e~~~r~e~ 75 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEF-------QGKRMIKEIKKQN----AQQIQSIQQ------------QFEQEKQERLEQ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTS----SHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc----hhhHHHHHH------------HHHHHHHHHHHH
Confidence 45566777777777777776664 2234444444321 122222222 223566677888
Q ss_pred HHHHHHHHhHHhhhHHHHHhhhcccc
Q 047081 401 IIQLEKQLDAKQALELEIERLRGTSK 426 (432)
Q Consensus 401 il~LEkqLd~kQ~LELEi~qLkG~L~ 426 (432)
+-+|..||.+-+.|+|.=+=..|+++
T Consensus 76 k~~l~~ql~qv~~L~lgsEv~qg~vE 101 (131)
T PF11068_consen 76 KNQLLQQLEQVQKLELGSEVVQGQVE 101 (131)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEeeeeeE
Confidence 88999999999999987665555554
No 111
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=50.66 E-value=2.9e+02 Score=28.75 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhH
Q 047081 395 EELHNKIIQLEKQLDA 410 (432)
Q Consensus 395 e~~~~kil~LEkqLd~ 410 (432)
.++..++.+|+++++.
T Consensus 93 ~~~~~q~~~l~~~~~~ 108 (332)
T TIGR01541 93 RTFRKQQRDLNKAMTA 108 (332)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3344455555555543
No 112
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=49.38 E-value=11 Score=27.01 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=11.4
Q ss_pred eEeecCCeeeccCCCC
Q 047081 33 NVKISDETFTCPYCPK 48 (432)
Q Consensus 33 ~vk~~~~~~~CP~C~~ 48 (432)
+|...+++|.||||..
T Consensus 17 ~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 17 QFDDGGKTWICNFCGT 32 (40)
T ss_dssp EEETTTTEEEETTT--
T ss_pred eEcCCCCEEECcCCCC
Confidence 4565678999999975
No 113
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=49.19 E-value=11 Score=27.63 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=8.7
Q ss_pred CeeeccCCCCC
Q 047081 39 ETFTCPYCPKK 49 (432)
Q Consensus 39 ~~~~CP~C~~~ 49 (432)
..++||+|++.
T Consensus 20 ~~~~Cp~CG~~ 30 (46)
T PRK00398 20 TGVRCPYCGYR 30 (46)
T ss_pred CceECCCCCCe
Confidence 37999999753
No 114
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=49.19 E-value=9.5 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.8
Q ss_pred eeeccCCCCCCccccCcHHHHhhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+|.|+.|.. .+-.+..|+.|-.
T Consensus 1 ~~~C~~C~~---~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGK---TFSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTE---EESSHHHHHHHHC
T ss_pred CCCCCccCC---ccCChhHHHHHhH
Confidence 589999984 3447889999953
No 115
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=49.01 E-value=2.6e+02 Score=27.11 Aligned_cols=46 Identities=28% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHh
Q 047081 310 QYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKN 362 (432)
Q Consensus 310 ~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn 362 (432)
.+-+.-.-.+-++|+.+||-.+.......++..++.. .|.+|+.++
T Consensus 133 DD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~-------~l~eE~~k~ 178 (192)
T PF09727_consen 133 DDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVS-------QLEEERTKL 178 (192)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3444556678888899999888888888888888776 555555554
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.54 E-value=5e+02 Score=30.26 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=62.0
Q ss_pred ecccCCCCCC-cchh-hhhhhccCCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Q 047081 216 VARSDDHSLN-NIIG-EHLRKNRDLKTISGLVE----EEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLME 289 (432)
Q Consensus 216 ~AradD~~~~-~~iG-~~LrK~gdLKTi~ei~~----e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~me 289 (432)
+|+..|.+.. ..+| .|+-..+.=.|+.++.. +-++++ ..|--+-++.-.-+..|.-.|.+... ++.+.. +.
T Consensus 62 ~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankd-a~lrq~eekn~slqerLelaE~~l~q-s~rae~-lp 138 (916)
T KOG0249|consen 62 MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKD-ADLRQNEEKNRSLQERLELAEPKLQQ-SLRAET-LP 138 (916)
T ss_pred HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcc-hhhchhHHhhhhhhHHHHHhhHhhHh-HHhhhh-hh
Confidence 4566676552 2222 35555556566665542 222222 22222333444445555555555544 333222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 047081 290 EKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEF 336 (432)
Q Consensus 290 ek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~ 336 (432)
+-+.-.+.-+.+. .++++|...|..-.++|..+++.+-.||.+
T Consensus 139 eveael~qr~~al----~~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 139 EVEAELAQRNAAL----TKAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred hhHHHHHHHHHHH----HHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3233333333333 358889999999999999999998888865
No 117
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.38 E-value=2.9e+02 Score=27.57 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHhhhHHHHHhhhc
Q 047081 383 VRKLAEDQKIEKEELHNKIIQLEKQLD-AKQALELEIERLRG 423 (432)
Q Consensus 383 vlkL~e~hkreKe~~~~kil~LEkqLd-~kQ~LELEi~qLkG 423 (432)
|+...++-..+.+.+..++..+|+.+. .++.++.++.-+..
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566666666777776663 45566666655543
No 118
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=48.34 E-value=6.1e+02 Score=31.21 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhh
Q 047081 301 EIKKIQLSAQYHFQRIFTEHEN--FKLQLEAQKKELEFLG 338 (432)
Q Consensus 301 Ei~kmq~~a~~~~~~I~~e~ek--l~~eLe~k~~eL~~r~ 338 (432)
++++.|. -++--+.++.+.++ +...++-+++.+.-+-
T Consensus 645 ~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~ 683 (1317)
T KOG0612|consen 645 ELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNEL 683 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777 55555666666666 6666666665554433
No 119
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=48.26 E-value=77 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047081 256 VSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIK 303 (432)
Q Consensus 256 v~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~ 303 (432)
.+.+..++...|-.|..||.+.......|+.+++.+.+....|.++..
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667778888899999999999999999999999999888888877643
No 120
>smart00360 RRM RNA recognition motif.
Probab=48.20 E-value=32 Score=24.47 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=30.6
Q ss_pred ccchhhHHHHHHhcCCCC-cceeeecCC--CCCceeEEEEeCCCccchHHHH
Q 047081 138 GESGSKLKDELIRRGLHP-TRVQSLWNF--RGHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 138 G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~gh~g~avv~F~~~w~Gf~~A~ 186 (432)
+.+...|++.|+. |.+ ..+.....+ ..++|++.|.|... ..-..|+
T Consensus 7 ~~~~~~l~~~f~~--~g~v~~~~i~~~~~~~~~~~~a~v~f~~~-~~a~~a~ 55 (71)
T smart00360 7 DVTEEELRELFSK--FGKIESVRLVRDKDTGKSKGFAFVEFESE-EDAEKAL 55 (71)
T ss_pred ccCHHHHHHHHHh--hCCEeEEEEEeCCCCCCCCceEEEEeCCH-HHHHHHH
Confidence 3477889999998 775 355555544 34789999999653 4444443
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.07 E-value=3e+02 Score=27.54 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhHH
Q 047081 396 ELHNKIIQLEKQLDAK 411 (432)
Q Consensus 396 ~~~~kil~LEkqLd~k 411 (432)
.+..++..|...|+.+
T Consensus 160 ~~~~~~~~L~~~l~~e 175 (239)
T COG1579 160 ELSSKREELKEKLDPE 175 (239)
T ss_pred HHHHHHHHHHHhcCHH
Confidence 3445555555555544
No 122
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=47.80 E-value=4.7e+02 Score=29.72 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 047081 248 EARKKNLLVSNLTNTIEVKNKHLEEMKERCI 278 (432)
Q Consensus 248 ~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~ 278 (432)
..+.-....+-|.++-...+..++++|.+..
T Consensus 176 ~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~ 206 (629)
T KOG0963|consen 176 LEQEWAEREAGLKDEEQNLQEQLEELEKKIS 206 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555554433
No 123
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.73 E-value=4.7e+02 Score=29.68 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 047081 254 LLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKE 333 (432)
Q Consensus 254 ~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~e 333 (432)
.+++.|..++......+.++..+|....-.+..+-.+...|.....+|+.++.......++..- .....|+.+..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~----~~~~~L~~~l~~ 363 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQ----ARESQLVSDVNQ 363 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 5667777777777777778888888888888888888888888888888877665544333222 222334444444
Q ss_pred HHHhhhHHH
Q 047081 334 LEFLGVDLQ 342 (432)
Q Consensus 334 L~~r~~eL~ 342 (432)
++.+..++.
T Consensus 364 ~~~~~~~~~ 372 (754)
T TIGR01005 364 LKAASAQAG 372 (754)
T ss_pred HHHHHHhCc
Confidence 444444443
No 124
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.55 E-value=2.7e+02 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 047081 313 FQRIFTEHENFKLQLEAQKKELEF 336 (432)
Q Consensus 313 ~~~I~~e~ekl~~eLe~k~~eL~~ 336 (432)
+..+-.+|.+|+.+|+....+++.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555666666666655544433
No 125
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=47.38 E-value=2.7e+02 Score=26.92 Aligned_cols=148 Identities=18% Similarity=0.257 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQ 330 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k 330 (432)
+-..|=..+..+.......-++|.+.|...+.-|...+-++.+.....+.++..|....+.-.+ .-.+...|+.++.+.
T Consensus 19 ~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~-qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 19 KIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQ-QEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344445555566666777778888888888888888888888888888887777655543211 112222222222222
Q ss_pred HHHHHHhhhHHHHHHhhcHHHHHHHHHHH-HHhhhccchhhHhHHHHhh-----------hhhHHHHHHHHHHHHHHHHH
Q 047081 331 KKELEFLGVDLQKREAKNENDRKALAEEI-EKNAMRNSSLQLATLEQQK-----------ADDNVRKLAEDQKIEKEELH 398 (432)
Q Consensus 331 ~~eL~~r~~eL~k~~~~~~~er~kl~~e~-~kn~~~~~~l~lA~~EQ~k-----------ade~vlkL~e~hkreKe~~~ 398 (432)
..+- ...+.....+=-.++..|+.+. +. .-+.||.....+ |...+....-.=++|...+.
T Consensus 98 ~~e~---~~~l~~~~~qfl~EK~~LEke~~e~-----~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~ 169 (206)
T PF14988_consen 98 RAEH---AEKLQEAESQFLQEKARLEKEASEL-----KILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLR 169 (206)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1122222233334455555544 22 223344333333 33334444444457777777
Q ss_pred HHHHHHHHH
Q 047081 399 NKIIQLEKQ 407 (432)
Q Consensus 399 ~kil~LEkq 407 (432)
..+.+|=++
T Consensus 170 k~L~~l~~e 178 (206)
T PF14988_consen 170 KELLQLIQE 178 (206)
T ss_pred HHHHHHHHH
Confidence 777766543
No 126
>PRK10698 phage shock protein PspA; Provisional
Probab=47.38 E-value=2.8e+02 Score=27.02 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNE---EIKKIQLSAQY 311 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~ne---Ei~kmq~~a~~ 311 (432)
|.+++...+=+...+..+++|+.-+.+.-..+.++|-....+...|.+ .+.+.+..|.-
T Consensus 16 n~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~ 77 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAEL 77 (222)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666778888888888888888888888887666555444 55555555443
No 127
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.18 E-value=8 Score=26.57 Aligned_cols=15 Identities=20% Similarity=0.815 Sum_probs=11.1
Q ss_pred cCCeeeccCCCCCCc
Q 047081 37 SDETFTCPYCPKKRK 51 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk 51 (432)
....|.||.|+..+.
T Consensus 14 ~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 14 EEAPWVCPVCGAPKD 28 (33)
T ss_pred CcCCCcCcCCCCcHH
Confidence 347899999976544
No 128
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=47.16 E-value=2.7e+02 Score=31.60 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 243 GLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEE------KDRLVQGYNEEIKKIQLSAQYHFQRI 316 (432)
Q Consensus 243 ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~mee------k~~l~~~~neEi~kmq~~a~~~~~~I 316 (432)
+......++-.+-|+-|...|....+.++.+|.......+++.++.++ |..|+++|+.-.+.-++..+++.++|
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445666788899999999999999998888888999998876 46889999998888888888888877
Q ss_pred HHHHHhhH
Q 047081 317 FTEHENFK 324 (432)
Q Consensus 317 ~~e~ekl~ 324 (432)
-.-.+.++
T Consensus 155 ~~~~~~~q 162 (632)
T PF14817_consen 155 QGQVEQLQ 162 (632)
T ss_pred HHHHHHHH
Confidence 65544443
No 129
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=46.91 E-value=2.6e+02 Score=26.59 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=15.4
Q ss_pred HhHHHHhhhhhHHHHHHHHHH
Q 047081 371 LATLEQQKADDNVRKLAEDQK 391 (432)
Q Consensus 371 lA~~EQ~kade~vlkL~e~hk 391 (432)
.|.+-+..|.+-+|+-+++.=
T Consensus 143 iAglT~eEAk~~Ll~~le~e~ 163 (201)
T PF12072_consen 143 IAGLTAEEAKEILLEKLEEEA 163 (201)
T ss_pred HhCCCHHHHHHHHHHHHHHHH
Confidence 566666778888888777764
No 130
>PRK12704 phosphodiesterase; Provisional
Probab=46.72 E-value=4.4e+02 Score=29.09 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 047081 243 GLVEEEARKKNLLV 256 (432)
Q Consensus 243 ei~~e~~rk~~~lv 256 (432)
.+..+..++...++
T Consensus 31 ~~l~~Ae~eAe~I~ 44 (520)
T PRK12704 31 AKIKEAEEEAKRIL 44 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333434333
No 131
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.16 E-value=5.5e+02 Score=30.03 Aligned_cols=35 Identities=37% Similarity=0.509 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhc
Q 047081 389 DQKIEKEELHNKIIQLEKQLDAKQALELEIERLRG 423 (432)
Q Consensus 389 ~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG 423 (432)
+-.++-+++...+..++.++......++.+.+|.|
T Consensus 421 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (908)
T COG0419 421 ELERELEELEEEIKKLEEQINQLESKELMIAELAG 455 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555556666666666665444556666654
No 132
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=46.13 E-value=8.8 Score=39.74 Aligned_cols=16 Identities=44% Similarity=1.026 Sum_probs=11.5
Q ss_pred ecCCeeeccCCCCCCc
Q 047081 36 ISDETFTCPYCPKKRK 51 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk 51 (432)
++--+|.|||||.-.+
T Consensus 372 nG~~~FKCPYCP~~~~ 387 (396)
T COG5109 372 NGVLSFKCPYCPEMSK 387 (396)
T ss_pred cCcEEeeCCCCCcchh
Confidence 3344899999997543
No 133
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=45.98 E-value=5.7e+02 Score=30.23 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=27.6
Q ss_pred cchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047081 366 NSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLD 409 (432)
Q Consensus 366 ~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd 409 (432)
-..+.+-.++.--+|-=.-+-+|+..+|+.++-.++..++|.+|
T Consensus 651 ~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiD 694 (988)
T KOG2072|consen 651 GKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKID 694 (988)
T ss_pred cccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344444444334444445667777888888888888888776
No 134
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.77 E-value=5.8e+02 Score=30.24 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHhhhHHHHHhhhccc
Q 047081 374 LEQQKADDNVRKLAEDQKIE-----KEELHNKIIQLEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 374 ~EQ~kade~vlkL~e~hkre-----Ke~~~~kil~LEkqLd~kQ~LELEi~qLkG~L 425 (432)
+++|=..=.||+=+++-+|+ --++..+|.-|+-+|..+.+.|+|.+.||--+
T Consensus 436 ad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen 492 (1265)
T KOG0976|consen 436 ADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAEN 492 (1265)
T ss_pred HHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHH
Confidence 34554555566666665543 34678899999999999999999998887644
No 135
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=45.73 E-value=1.6e+02 Score=23.85 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHH
Q 047081 309 AQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEE 358 (432)
Q Consensus 309 a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e 358 (432)
..+.+++++.+|..|+.-|.---..+..||.+|..-...--.+|..+...
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~k 53 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERK 53 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999998888888888889998888776555555555433
No 136
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=45.50 E-value=64 Score=23.10 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=35.1
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-CCceeEEEEeCCCccchHHHH
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-GHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-gh~g~avv~F~~~w~Gf~~A~ 186 (432)
+.|-|.|. ..+..++++.|+. |.+ ..+...+.+. ...|++.|.|.+. ..-..|.
T Consensus 2 i~i~~l~~---------~~~~~~i~~~~~~--~g~i~~~~~~~~~~~~~~~~~~v~f~s~-~~a~~a~ 57 (74)
T cd00590 2 LFVGNLPP---------DVTEEDLRELFSK--FGKVESVRIVRDKDTKSKGFAFVEFEDE-EDAEKAL 57 (74)
T ss_pred EEEeCCCC---------ccCHHHHHHHHHh--cCCEEEEEEeeCCCCCcceEEEEEECCH-HHHHHHH
Confidence 45667765 3567889999988 643 4455555443 3588999999965 3444444
No 137
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=45.03 E-value=2.6e+02 Score=26.08 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 047081 381 DNVRKLAEDQKIEKEELHN 399 (432)
Q Consensus 381 e~vlkL~e~hkreKe~~~~ 399 (432)
.++.+.++.=|+++++.+-
T Consensus 113 ~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 113 EDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3455555555666665543
No 138
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=44.71 E-value=76 Score=34.33 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQAL 414 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~L 414 (432)
..++|+-.++-+++|++|++-..+.|++|.+++.+
T Consensus 39 h~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 39 HKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999988764
No 139
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=44.67 E-value=2.8e+02 Score=29.12 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=25.0
Q ss_pred hHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047081 370 QLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQ 403 (432)
Q Consensus 370 ~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~ 403 (432)
..|...+-||..+.-+++++-+.-.+++-+|--+
T Consensus 156 a~aEA~k~Ka~aeAkkkAe~a~kA~eeAkaKAe~ 189 (387)
T COG3064 156 AAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEA 189 (387)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555578888888888888878877777654
No 140
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.19 E-value=4.7e+02 Score=28.68 Aligned_cols=152 Identities=20% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHh
Q 047081 259 LTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIF-TEHENFKLQLEAQKKELEFL 337 (432)
Q Consensus 259 L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~-~e~ekl~~eLe~k~~eL~~r 337 (432)
+...|..-...+..|..++++........++ ..|.+.+.+.+.+........+.... ...+.++.+++..+.+|..+
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~--~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~ 326 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELE--RALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEK 326 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -hhHHH-HHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047081 338 -GVDLQ-KREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKA-----DDNVRKLAEDQKIEKEELHNKIIQLEKQLDA 410 (432)
Q Consensus 338 -~~eL~-k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~ka-----de~vlkL~e~hkreKe~~~~kil~LEkqLd~ 410 (432)
..+|. ++.++.+.-..+|.++.. +..+|+++. .+.|-.-=..+...=+++..+|-.||+-++.
T Consensus 327 ~~~~L~~eL~~~~~~~~~~l~~~l~----------~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~ 396 (582)
T PF09731_consen 327 YEEELRQELKRQEEAHEEHLKNELR----------EQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDA 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHhhh
Q 047081 411 KQALELEIERLR 422 (432)
Q Consensus 411 kQ~LELEi~qLk 422 (432)
....+.+..+..
T Consensus 397 ~~~~~~~~~~~~ 408 (582)
T PF09731_consen 397 RSEAEDENRRAQ 408 (582)
T ss_pred HHHHHHHHHHHH
No 141
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=44.11 E-value=4.8e+02 Score=28.79 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhH
Q 047081 303 KKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDN 382 (432)
Q Consensus 303 ~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~ 382 (432)
++|....-+-.+.=-..-+..+.+++.+..++....++++.-....+.+|+..++..+... ..=+-|...+.+.++.
T Consensus 198 k~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak---~~pe~ae~~~~~edek 274 (489)
T PF05262_consen 198 KDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK---KLPEPAEAQQKKEDEK 274 (489)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hCcchhhhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhh
Q 047081 383 VRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLR 422 (432)
Q Consensus 383 vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLk 422 (432)
+ +|+.++|.|.+-..+-+-+.+ ++++-+...+.++
T Consensus 275 ~---aE~~kkE~EKaq~E~~k~~Ee--a~kake~~aee~k 309 (489)
T PF05262_consen 275 L---AEEEKKEAEKAQEEAKKKQEE--AKKAKEQAAEELK 309 (489)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHh
No 142
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=43.81 E-value=10 Score=28.59 Aligned_cols=10 Identities=30% Similarity=1.022 Sum_probs=8.1
Q ss_pred eccCCCCCCc
Q 047081 42 TCPYCPKKRK 51 (432)
Q Consensus 42 ~CP~C~~~kk 51 (432)
.||||++...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 6999988654
No 143
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=43.18 E-value=5.7e+02 Score=29.40 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEK-DRLVQGYNEEIKKIQL 307 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek-~~l~~~~neEi~kmq~ 307 (432)
.-+|+.|+.+|+..-..+.+||.-..+...+|.-+.|-- ++|+..-.=|.+||--
T Consensus 124 ~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDL 179 (861)
T KOG1899|consen 124 QLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDL 179 (861)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHH
Confidence 346899999999999999999988877777776655432 3344433334444433
No 144
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.07 E-value=5e+02 Score=28.68 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHhhhHHHHHHhhcHHHHHHHHHHHHHh-hhccchhhHhHHHHhhhhhHHHHHHHH
Q 047081 334 LEFLGVDLQKREAKNENDRKALAEEIEKN-AMRNSSLQLATLEQQKADDNVRKLAED 389 (432)
Q Consensus 334 L~~r~~eL~k~~~~~~~er~kl~~e~~kn-~~~~~~l~lA~~EQ~kade~vlkL~e~ 389 (432)
--+.|-++++.--+.+.+-..|...+-+- ..-.+.|++...|....+-.+|-|-++
T Consensus 444 svsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeE 500 (527)
T PF15066_consen 444 SVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEE 500 (527)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665555555555454433211 112355666655555555556655544
No 145
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=42.96 E-value=52 Score=29.69 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=40.4
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC--CCceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR--GHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
.+.|-|++. ..+...|++.|.. |.+ ..+.+..++. -+.|++.|.|.+. ..-..|+.
T Consensus 36 ~lfVgnL~~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSW---------GTDDASLRDAFAH--FGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhc--CCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 466889986 3478899999999 876 4455555442 3789999999965 56666665
No 146
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.80 E-value=35 Score=32.18 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=8.8
Q ss_pred HHHHHHHhhhh
Q 047081 270 LEEMKERCIET 280 (432)
Q Consensus 270 l~~lE~k~~~~ 280 (432)
|++||.+||+.
T Consensus 2 LeD~EsklN~A 12 (166)
T PF04880_consen 2 LEDFESKLNQA 12 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888888874
No 147
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=42.79 E-value=8.5e+02 Score=31.31 Aligned_cols=118 Identities=21% Similarity=0.213 Sum_probs=65.9
Q ss_pred hhhhhhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHH-------------HHHHHHHH
Q 047081 228 IGEHLRKNR-DLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIE-------------NLMEEKDR 293 (432)
Q Consensus 228 iG~~LrK~g-dLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~-------------~~meek~~ 293 (432)
|=.|||+-- -+-|--++..-+...-.+.|+.+...|+.-+..|...+.++..+..+++ -++|-|..
T Consensus 1154 iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~ 1233 (1822)
T KOG4674|consen 1154 IVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV 1233 (1822)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH
Confidence 556777653 2334445555566666777888888888888888888877755444433 23344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHh
Q 047081 294 LVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREA 346 (432)
Q Consensus 294 l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~ 346 (432)
|-..-.....++| -.++-++++-.+...|...|....-++.....++.+++-
T Consensus 1234 LRee~~~~~~k~q-El~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1234 LREENEANLEKIQ-ELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333332 234444455555555555555555555555555555443
No 148
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.38 E-value=5.9e+02 Score=29.36 Aligned_cols=41 Identities=32% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhcccc
Q 047081 386 LAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTSK 426 (432)
Q Consensus 386 L~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L~ 426 (432)
+|.-=+-|.+.+.+|.-+|++=-+..--||||...|+.+|+
T Consensus 276 tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344578888888888888888888888999888887775
No 149
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=42.08 E-value=14 Score=28.57 Aligned_cols=16 Identities=25% Similarity=0.887 Sum_probs=11.1
Q ss_pred eEeecCCeeeccCCCC
Q 047081 33 NVKISDETFTCPYCPK 48 (432)
Q Consensus 33 ~vk~~~~~~~CP~C~~ 48 (432)
+.....-+|+||+|+-
T Consensus 37 ~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 37 KEEFEEIQYRCPYCGA 52 (54)
T ss_pred cccCCceEEEcCCCCC
Confidence 3444455899999973
No 150
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.04 E-value=3.3e+02 Score=26.40 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH-----hhcH
Q 047081 275 ERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKRE-----AKNE 349 (432)
Q Consensus 275 ~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~-----~~~~ 349 (432)
......-..|...+.+--.-...|.++..+.......++.++......+...|+.-++..+.+|++++... +.+.
T Consensus 70 e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~ 149 (239)
T cd07647 70 ENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSG 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred HHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 047081 350 NDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELE 417 (432)
Q Consensus 350 ~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELE 417 (432)
.-.+.++.=..| +..|...-.+|+.+-...|+...+-+......+...=..+ |.||-+
T Consensus 150 ~~~ke~eK~~~K-------~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~---Q~lEe~ 207 (239)
T cd07647 150 AQPKEAEKLKKK-------AAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVF---QNMEEE 207 (239)
T ss_pred CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
No 151
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=41.79 E-value=1.7e+02 Score=29.50 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=47.4
Q ss_pred CCCeeeccceEEEeccccccCCC-CCccccch---hhHHHHHHhcCCC-Ccceeee----cCCCCCceeEEEEeCCCccc
Q 047081 111 SDGKFVWPWIGIVVNIPTRRGQD-GRSVGESG---SKLKDELIRRGLH-PTRVQSL----WNFRGHSGCALVQFNKNWPG 181 (432)
Q Consensus 111 ~de~~VWPwmgIi~N~~~~~~~d-g~~~G~s~---~~L~~~l~~~GF~-p~kv~~l----~~~~gh~g~avv~F~~~w~G 181 (432)
++=.+.||=-||=..++. .... ...||+=- +-=+.+|...|.. |.++..+ --+-|++-. +++|++-
T Consensus 43 rGl~yFWPapv~q~~~~~-pgegaktvvGe~y~~esvPr~~L~~agmplPe~~~~~~TRlliK~gNRel----yGsDF~~ 117 (289)
T COG4985 43 RGLTYFWPAPVLQWQTPD-PGEGAKTVVGELYARESVPRSHLKEAGMPLPEKVQAAATRLLIKVGNREL----YGSDFIA 117 (289)
T ss_pred cccccccCchheeeeccC-CCccchhhHHHHHHhhcccHHHHHHcCCCCCCchHHHHHHHHHHhcchhh----ccchHHH
Confidence 566788998888777764 1111 12222200 0012245555554 3322211 111222211 3444443
Q ss_pred hHHHHhhHhhhhhccCChhhhhccCCCCCcceeeecccCCC
Q 047081 182 LDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVARSDDH 222 (432)
Q Consensus 182 f~~A~~fe~~Fe~~~~Gr~dW~~~~~~~~~LYGw~AradD~ 222 (432)
+ +.|+-.|..--.|-..-. +.+++.+||++++-+|-
T Consensus 118 l---le~~~q~~~~P~gl~vle--R~~~G~~yG~ll~~~~n 153 (289)
T COG4985 118 L---LEFETQFKGAPQGLAVLE--RSRGGQLYGKLLRFDSN 153 (289)
T ss_pred H---HHHHHHhhcCcchheeee--eccCcchhhheeeeccC
Confidence 3 334444443333322222 23478999999998775
No 152
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.63 E-value=28 Score=22.71 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 047081 393 EKEELHNKIIQLEKQLDA 410 (432)
Q Consensus 393 eKe~~~~kil~LEkqLd~ 410 (432)
|-..+-++|..||+||+.
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456678999999999975
No 153
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.56 E-value=4.7e+02 Score=27.96 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHH
Q 047081 305 IQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALA 356 (432)
Q Consensus 305 mq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~ 356 (432)
||+.|--..-..-.-|-|+-..||+.+..--.-..+=+.+.++-+-||..|.
T Consensus 101 mQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~ 152 (561)
T KOG1103|consen 101 MQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQ 152 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHH
Confidence 3333333333333333444444444333333333344444444444444443
No 154
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=41.53 E-value=11 Score=28.37 Aligned_cols=13 Identities=23% Similarity=0.922 Sum_probs=8.1
Q ss_pred CeeeccCCCCCCc
Q 047081 39 ETFTCPYCPKKRK 51 (432)
Q Consensus 39 ~~~~CP~C~~~kk 51 (432)
..|+||.|...|.
T Consensus 33 ~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 33 DDWVCPVCGAPKS 45 (47)
T ss_dssp TT-B-TTTSSBGG
T ss_pred CCCcCcCCCCccc
Confidence 4599999987654
No 155
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=41.05 E-value=91 Score=26.80 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=45.3
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCC-----CCCceeEEEEeCCCccchHHHHhhHhhhh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNF-----RGHSGCALVQFNKNWPGLDNAMAFEKSFE 193 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~-----~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe 193 (432)
|+.|-|||. -.+-..|.+.+.. ..++...-+|-| ..+.|+|.|-|.+ -..|.+|.+.|.
T Consensus 3 TvMirNIPn---------~~t~~~L~~~l~~--~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~----~~~~~~F~~~f~ 66 (97)
T PF04059_consen 3 TVMIRNIPN---------KYTQEMLIQILDE--HFKGKYDFFYLPIDFKNKCNLGYAFVNFTS----PQAAIRFYKAFN 66 (97)
T ss_pred eEEEecCCC---------CCCHHHHHHHHHH--hccCcceEEEeeeeccCCCceEEEEEEcCC----HHHHHHHHHHHc
Confidence 678999997 3356778887776 456677777754 3489999999976 467889999988
No 156
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.65 E-value=5.4e+02 Score=28.43 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=4.3
Q ss_pred eCCCccchHH
Q 047081 175 FNKNWPGLDN 184 (432)
Q Consensus 175 F~~~w~Gf~~ 184 (432)
||.++..+.+
T Consensus 163 ~G~a~~~le~ 172 (569)
T PRK04778 163 FGPALDELEK 172 (569)
T ss_pred ccchHHHHHH
Confidence 4444444443
No 157
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=40.64 E-value=12 Score=28.46 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=7.2
Q ss_pred eeeccCCCCCC
Q 047081 40 TFTCPYCPKKR 50 (432)
Q Consensus 40 ~~~CP~C~~~k 50 (432)
...|||| |.+
T Consensus 3 LkPCPFC-G~~ 12 (61)
T PF14354_consen 3 LKPCPFC-GSA 12 (61)
T ss_pred CcCCCCC-CCc
Confidence 3579999 554
No 158
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=40.63 E-value=3.4e+02 Score=26.13 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHh
Q 047081 298 YNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQ 377 (432)
Q Consensus 298 ~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~ 377 (432)
|..++++.......+++++..........|+.-++..+..|++++....++..- -..+.+|+. ..++-|..+-.
T Consensus 94 ~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~---~~ke~eK~~---~k~~k~~~~~~ 167 (236)
T cd07651 94 FASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLT---WGKELEKNN---AKLNKAQSSIN 167 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccc---CcchHHHHH---HHHHHHHHHHH
Confidence 333444444445556666777777777778888888888898888655432110 001233321 33455666677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH-HHhhhccc
Q 047081 378 KADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELE-IERLRGTS 425 (432)
Q Consensus 378 kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELE-i~qLkG~L 425 (432)
+++.+...++++..+-+......+ ..-++.=|.||-+ |+.||..|
T Consensus 168 ~~~~~Y~~~v~~~~~~~~~~~~~~---~~~~~~~Q~lEe~Ri~~lk~~l 213 (236)
T cd07651 168 SSRRDYQNAVKALRELNEIWNREW---KAALDDFQDLEEERIQFLKSNC 213 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 788889888888886666655544 3445555655543 44455433
No 159
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=40.62 E-value=15 Score=33.38 Aligned_cols=12 Identities=58% Similarity=1.262 Sum_probs=9.7
Q ss_pred CCeeeccCCCCC
Q 047081 38 DETFTCPYCPKK 49 (432)
Q Consensus 38 ~~~~~CP~C~~~ 49 (432)
++.|.||.|++.
T Consensus 121 ~~~f~Cp~Cg~~ 132 (147)
T smart00531 121 DGTFTCPRCGEE 132 (147)
T ss_pred CCcEECCCCCCE
Confidence 567999999864
No 160
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.61 E-value=7.4e+02 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCI 278 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~ 278 (432)
....++.-|.++|+...+.+..+...|.
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888888888888888886
No 161
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.49 E-value=3e+02 Score=25.40 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 047081 299 NEEIKKIQLSAQYHFQ 314 (432)
Q Consensus 299 neEi~kmq~~a~~~~~ 314 (432)
|.|+.+|...+...++
T Consensus 62 n~eL~~Lk~~~~~~v~ 77 (177)
T PF13870_consen 62 NKELLKLKKKIGKTVQ 77 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445444444443
No 162
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.40 E-value=5.1e+02 Score=28.06 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHh
Q 047081 396 ELHNKIIQLEKQLD 409 (432)
Q Consensus 396 ~~~~kil~LEkqLd 409 (432)
.+-+.|-.+|.+..
T Consensus 235 ~L~~~Ias~e~~aA 248 (420)
T COG4942 235 RLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554433
No 163
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=39.95 E-value=12 Score=31.10 Aligned_cols=14 Identities=29% Similarity=0.949 Sum_probs=4.8
Q ss_pred ecCCeeeccCCCCC
Q 047081 36 ISDETFTCPYCPKK 49 (432)
Q Consensus 36 ~~~~~~~CP~C~~~ 49 (432)
-....|.||||...
T Consensus 18 ~l~~~F~CPfC~~~ 31 (81)
T PF05129_consen 18 KLPKVFDCPFCNHE 31 (81)
T ss_dssp --SS----TTT--S
T ss_pred CCCceEcCCcCCCC
Confidence 35688999999843
No 164
>PHA00616 hypothetical protein
Probab=39.91 E-value=9.5 Score=28.45 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=17.3
Q ss_pred eeeccCCCCCCccccCcHHHHhhhhc
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+|.||-|+.. +-..++|.+|-..
T Consensus 1 pYqC~~CG~~---F~~~s~l~~H~r~ 23 (44)
T PHA00616 1 MYQCLRCGGI---FRKKKEVIEHLLS 23 (44)
T ss_pred CCccchhhHH---HhhHHHHHHHHHH
Confidence 4899999863 5578888888543
No 165
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=39.25 E-value=6.7e+02 Score=29.05 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HH
Q 047081 256 VSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQL------EA 329 (432)
Q Consensus 256 v~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eL------e~ 329 (432)
++.|++++..-.+.|+.||.+...-+.-|..++.+.|.|.+.... +.+.+..-..-.+.||.-+ +.
T Consensus 164 l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk--------~~~~le~q~tlv~~LR~YvGeq~p~~~ 235 (739)
T PF07111_consen 164 LASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSK--------TQEELEAQVTLVEQLRKYVGEQVPPEV 235 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHhhhCCccc
Q ss_pred HHHHHHHhhhHHHHHHhhcHHHHHHH---------------------HHHHHHhhhccchhhHhHHHHhhh-----hhHH
Q 047081 330 QKKELEFLGVDLQKREAKNENDRKAL---------------------AEEIEKNAMRNSSLQLATLEQQKA-----DDNV 383 (432)
Q Consensus 330 k~~eL~~r~~eL~k~~~~~~~er~kl---------------------~~e~~kn~~~~~~l~lA~~EQ~ka-----de~v 383 (432)
+...-+.-..+|....-+=..||--| ++|+-++....+.|.-..-.-.++ .+.|
T Consensus 236 ~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKV 315 (739)
T PF07111_consen 236 HSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKV 315 (739)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHH
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHhHHh
Q 047081 384 RKLA-------EDQKIEKEELHNKIIQLEKQLDAKQ 412 (432)
Q Consensus 384 lkL~-------e~hkreKe~~~~kil~LEkqLd~kQ 412 (432)
+.|. -+|...+..+..+|..||+++-+.+
T Consensus 316 FaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~ 351 (739)
T PF07111_consen 316 FALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQ 351 (739)
T ss_pred HHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 166
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=38.88 E-value=6.4e+02 Score=28.72 Aligned_cols=44 Identities=34% Similarity=0.511 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhcccc
Q 047081 380 DDNVRKLAEDQK-------IEKEELHNKIIQLEKQLDAKQALELEIERLRGTSK 426 (432)
Q Consensus 380 de~vlkL~e~hk-------reKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L~ 426 (432)
|....+|..+=+ .+-+..-+.|-.||++|.++-. +|++|+.+|+
T Consensus 291 d~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~---~leel~~kL~ 341 (629)
T KOG0963|consen 291 DSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKIS---ELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 444455555544 4555556788889999988743 4555554443
No 167
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=38.51 E-value=3.4e+02 Score=25.49 Aligned_cols=94 Identities=22% Similarity=0.220 Sum_probs=61.8
Q ss_pred eecccCCCCCCcchh--hhhhhccCCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-HHHHHHHhhhhhHHHHHHHH
Q 047081 215 WVARSDDHSLNNIIG--EHLRKNRDLKTISGLVEEEAR--KKNLLVSNLTNTIEVKNKH-LEEMKERCIETSNFIENLME 289 (432)
Q Consensus 215 w~AradD~~~~~~iG--~~LrK~gdLKTi~ei~~e~~r--k~~~lv~~L~~~i~~kn~~-l~~lE~k~~~~s~sL~~~me 289 (432)
|++.+++..+.+..+ .|||-.+-|-+...|..-+.+ +...+=..+..+|+.+... -.+.+...-+--.--.++-.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~r 94 (157)
T PF15236_consen 15 NLGKASRVTSMQSSSKTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAR 94 (157)
T ss_pred hhcccccccccccccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 556666766655555 899998888888887766655 3444445566666665433 33444444444555566667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047081 290 EKDRLVQGYNEEIKKIQLS 308 (432)
Q Consensus 290 ek~~l~~~~neEi~kmq~~ 308 (432)
++..|...|-+|..++.+.
T Consensus 95 ere~~q~~~E~E~~~~~~K 113 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREK 113 (157)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888898888776654
No 168
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=38.48 E-value=7.7e+02 Score=29.59 Aligned_cols=137 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 047081 241 ISGLVEEEAR-KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEK--------DRLVQGYNEEIKKIQLSAQY 311 (432)
Q Consensus 241 i~ei~~e~~r-k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek--------~~l~~~~neEi~kmq~~a~~ 311 (432)
+.+++.-+.. =....-.......+-+..|+++. ...|++++.+. ...++.-..||++.+...|.
T Consensus 1031 ~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~-------~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~ 1103 (1189)
T KOG1265|consen 1031 VRELVNRQTQELLEMRREQYEEEFELKEEHLKEQ-------ISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRM 1103 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHH
Q 047081 312 HFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQK 391 (432)
Q Consensus 312 ~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hk 391 (432)
.--+. +-.-+=+.+.|..++||.++-.+--. .+|+.|.+--.+- .=+|++.|.
T Consensus 1104 e~ik~-~~~~kdK~e~er~~rE~n~s~i~~~V------~e~krL~~~~~k~--------------------~e~L~k~~~ 1156 (1189)
T KOG1265|consen 1104 EDIKV-DKVIKDKAERERRKRELNSSNIKEFV------EERKRLAEKQSKR--------------------QEQLVKKHL 1156 (1189)
T ss_pred Hhhhh-ccccccHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH--------------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 047081 392 IEKEELHNKIIQLEKQLDAK 411 (432)
Q Consensus 392 reKe~~~~kil~LEkqLd~k 411 (432)
..-+.+...--.|++|+.++
T Consensus 1157 ~~leql~e~~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1157 EVLEQLAEEEKALDAEAEQE 1176 (1189)
T ss_pred HHHHHHHHhhHHHHHHHHHH
No 169
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=38.42 E-value=14 Score=36.72 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=23.9
Q ss_pred ceEeecCCeeeccCCCCCCccccCcHHHHhhhhccC
Q 047081 32 YNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGIG 67 (432)
Q Consensus 32 ~~vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~gvg 67 (432)
+.+..-++.|.|.||+-+ +-+--+|+.|--||-
T Consensus 231 in~~LR~eh~YC~fCG~~---y~~~edl~ehCPGvn 263 (268)
T KOG1994|consen 231 INIFLRSEHYYCFFCGIK---YKDEEDLYEHCPGVN 263 (268)
T ss_pred HHHHHhccceEEEEeccc---cCCHHHHHHhCCCCC
Confidence 334455678999999853 236888999988863
No 170
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=38.24 E-value=7.1e+02 Score=29.09 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Q 047081 388 EDQKIEKEELHNKIIQLEKQLDAKQ 412 (432)
Q Consensus 388 e~hkreKe~~~~kil~LEkqLd~kQ 412 (432)
+.++++-+.+-.++-.|++.|..++
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5677888888999999999999888
No 171
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.05 E-value=2.5e+02 Score=24.57 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 047081 308 SAQYHFQRIFTE 319 (432)
Q Consensus 308 ~a~~~~~~I~~e 319 (432)
.++++.++|+++
T Consensus 73 ~g~~NL~~LY~E 84 (107)
T PF06156_consen 73 EGRDNLARLYQE 84 (107)
T ss_pred chHHHHHHHHhc
Confidence 456666666553
No 172
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.65 E-value=3.8e+02 Score=25.74 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=57.4
Q ss_pred hhhhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047081 230 EHLRKNRDLKT-ISGLVEEEARKKNLLVSNLTNTIEVK-------NKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEE 301 (432)
Q Consensus 230 ~~LrK~gdLKT-i~ei~~e~~rk~~~lv~~L~~~i~~k-------n~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neE 301 (432)
.|=+++.++|. |+||..+... ++..|+.+|+.. .+.+.++.......+..|....+++..|...-..=
T Consensus 6 ~He~af~~iK~YYndIT~~NL~----lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 6 NHEKAFQEIKNYYNDITLNNLE----LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445556665 6777766655 355555555444 44445555555556666666666665555333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHH
Q 047081 302 IKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALA 356 (432)
Q Consensus 302 i~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~ 356 (432)
-+.-+ .+.....--..++.+.+.|.--...|..+-..-+.||..|.
T Consensus 82 ~kdK~---------~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 82 EKDKQ---------SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11122222234455555555555555555555555666555
No 173
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.24 E-value=6.6e+02 Score=28.47 Aligned_cols=132 Identities=12% Similarity=0.087 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HhhhHHHHHHhhcHHHHH
Q 047081 278 IETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELE----FLGVDLQKREAKNENDRK 353 (432)
Q Consensus 278 ~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~----~r~~eL~k~~~~~~~er~ 353 (432)
...-..++-.++...+.|....++++++-.....+.....+.+.+...+--.+..-.. ..+.+.-.+...+...+.
T Consensus 46 ~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 125 (611)
T KOG2398|consen 46 AESWLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLHRC 125 (611)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666666666666666665555555444443322222111 122222233333333333
Q ss_pred HHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047081 354 ALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLD 409 (432)
Q Consensus 354 kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd 409 (432)
.+.+-..+....+..+.-+..-=+++++....+++....-.++.-.+..++...+.
T Consensus 126 ~e~e~~~~~~k~~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ 181 (611)
T KOG2398|consen 126 QEKESLKEKEKRKKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQ 181 (611)
T ss_pred HhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222233444444445677888889999988777777777777666554
No 174
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=37.00 E-value=54 Score=26.70 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=26.0
Q ss_pred eeccCCCCCC-ccccCcHHHHhhhhccCCC--CccCh-HHHHhHHHHHHHHHh
Q 047081 41 FTCPYCPKKR-KHDYLYKDLLQHASGIGNS--SKRSA-KEKANHLALAKFLET 89 (432)
Q Consensus 41 ~~CP~C~~~k-k~~y~~~~LlqHA~gvg~~--~~r~a-k~ka~HlaLak~L~~ 89 (432)
=.||||..+. .-||.=-+||.+=.+..|- +.|-+ --...|+.|+++++.
T Consensus 6 k~c~~~~~~~~~iDYKnv~lL~~Fis~~GkIlpRriTgl~~k~Qr~l~~aIKr 58 (70)
T TIGR00165 6 KYCRFTAEGIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLARAIKR 58 (70)
T ss_pred CCCCccCCCCCcCCccCHHHHHHhcCCCCeEcCCccCCcCHHHHHHHHHHHHH
Confidence 3599997543 2355433455553332211 12222 234578888888875
No 175
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=36.94 E-value=2.2e+02 Score=31.62 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=53.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhHHHHHH--------hhcHHHHHHHHHHHHHhhhcc--------chhhHhHHHHhhh
Q 047081 316 IFTEHENFKLQLEAQKKELEFLGVDLQKRE--------AKNENDRKALAEEIEKNAMRN--------SSLQLATLEQQKA 379 (432)
Q Consensus 316 I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~--------~~~~~er~kl~~e~~kn~~~~--------~~l~lA~~EQ~ka 379 (432)
-|.+..|-...+-+++.|+++-.+-|.||- +.+++.-.+-..-+--|-.+| ..|++|.--.
T Consensus 331 AFqnl~KqqE~iN~qReeIerqrklLaKRKPp~~gkvqap~~~ne~kqrkskntNGaenifrrpeep~~ltlaEYhE--- 407 (775)
T KOG1151|consen 331 AFQNLIKQQERINSQREEIERQRKLLAKRKPPAMGKVQAPPATNEQKQRKSKNTNGAENIFRRPEEPETLTLAEYHE--- 407 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCCccccccccccCCCcccccccCCCCcccccHHHHHh---
Confidence 366777777888888999999888888774 333322222111111233445 6777776433
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 047081 380 DDNVRKLAEDQK-IEKEELHNKIIQLEK 406 (432)
Q Consensus 380 de~vlkL~e~hk-reKe~~~~kil~LEk 406 (432)
.|++.||--.|= +|.-++-+..-.||+
T Consensus 408 qeEIfKLRlgHLkKEEaeiqaElERLEr 435 (775)
T KOG1151|consen 408 QEEIFKLRLGHLKKEEAEIQAELERLER 435 (775)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 478899988884 444455555555554
No 176
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=36.48 E-value=17 Score=22.54 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=10.3
Q ss_pred eeccCCCCCCccccCcHHHHhhh
Q 047081 41 FTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 41 ~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
|+||+|+=.. ....|..|-
T Consensus 1 y~C~~C~y~t----~~~~l~~H~ 19 (24)
T PF13909_consen 1 YKCPHCSYST----SKSNLKRHL 19 (24)
T ss_dssp EE-SSSS-EE----SHHHHHHHH
T ss_pred CCCCCCCCcC----CHHHHHHHH
Confidence 7899997221 234566663
No 177
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.44 E-value=7.9e+02 Score=29.09 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHH
Q 047081 380 DDNVRKLAEDQK 391 (432)
Q Consensus 380 de~vlkL~e~hk 391 (432)
.+.+++|+-+.+
T Consensus 499 q~kl~~l~~Ekq 510 (1118)
T KOG1029|consen 499 QEKLQKLAPEKQ 510 (1118)
T ss_pred HHHHHhhhhHHH
Confidence 455666665444
No 178
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.95 E-value=4.4e+02 Score=26.05 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 047081 310 QYHFQRIFTEHENFKLQLEAQKK 332 (432)
Q Consensus 310 ~~~~~~I~~e~ekl~~eLe~k~~ 332 (432)
.+.+++.+++...|+.+++..++
T Consensus 80 ~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 80 QEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 179
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=35.90 E-value=3.1e+02 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKD 292 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~ 292 (432)
++|...|++.|..-.-=|.+++++++....=+.-|++-+.
T Consensus 44 ~~l~k~L~eki~~Fh~ILDd~~~~l~~sk~~v~~m~e~~q 83 (105)
T PF11214_consen 44 NQLQKQLSEKIHKFHSILDDTESKLNDSKWYVDTMVELKQ 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777666655554433
No 180
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=35.58 E-value=2.8e+02 Score=28.25 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=21.5
Q ss_pred CCCccccchhhHHHHHHhcCCCCccee-eecCCCCCceeEEEEeCCC
Q 047081 133 DGRSVGESGSKLKDELIRRGLHPTRVQ-SLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 133 dg~~~G~s~~~L~~~l~~~GF~p~kv~-~l~~~~gh~g~avv~F~~~ 178 (432)
+|...-|++..+-......=-.+...+ .|.+..|..| +.|.|++.
T Consensus 67 ~g~~k~mtn~t~mk~IeeVq~S~~~LrlTC~~~~~s~G-v~l~fnGl 112 (264)
T PF07246_consen 67 SGDLKEMTNKTMMKIIEEVQLSISNLRLTCIGSLGSEG-VSLDFNGL 112 (264)
T ss_pred CcchhhcchhhHHHHHHHHhcccccceeeecCCCCcce-eEEecCCC
Confidence 555556666666654433111221111 2344555555 45677654
No 181
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=35.40 E-value=58 Score=27.14 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=28.7
Q ss_pred CeeeccCCCCCC-ccccCcHHHHhhhhccCCC--CccCh-HHHHhHHHHHHHHHh
Q 047081 39 ETFTCPYCPKKR-KHDYLYKDLLQHASGIGNS--SKRSA-KEKANHLALAKFLET 89 (432)
Q Consensus 39 ~~~~CP~C~~~k-k~~y~~~~LlqHA~gvg~~--~~r~a-k~ka~HlaLak~L~~ 89 (432)
+.-.||||..+- .-||.=-+||++=.+..|- +.|-+ --...|+.|+++++.
T Consensus 13 r~k~c~~c~~~~~~iDYKnv~lL~~Fis~~GkIlprriTG~~~k~Qr~l~~aIkr 67 (79)
T PRK00391 13 RKKVCRFCAEKIEYIDYKDVELLKKFISERGKILPRRITGTSAKHQRQLATAIKR 67 (79)
T ss_pred CCCCCcccCCCCCcCCccCHHHHHHhcCCCceEcCcccCCcCHHHHHHHHHHHHH
Confidence 345699998763 3456444566663332111 12222 234578888888875
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.00 E-value=6.5e+02 Score=27.68 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=33.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHH
Q 047081 272 EMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDL 341 (432)
Q Consensus 272 ~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL 341 (432)
-+|.++-+...++.+.-.|...+. .-|+-+++-|+.-+.++..+..--.......+.+..+|+..-++|
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444443332222 444455555666666666555555555555555555555533333
No 183
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=34.97 E-value=5.4e+02 Score=26.73 Aligned_cols=100 Identities=20% Similarity=0.246 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH------HH------------HHHHHHHHHH------H
Q 047081 247 EEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLME------EK------------DRLVQGYNEE------I 302 (432)
Q Consensus 247 e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~me------ek------------~~l~~~~neE------i 302 (432)
...|+..-++..+-.-+.-+.-.+++||..|.-.-.++.+-|. || .+|..+++.. +
T Consensus 172 daLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~V 251 (305)
T PF14915_consen 172 DALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTV 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666777788888888888777777776663 32 4556666653 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHh
Q 047081 303 KKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREA 346 (432)
Q Consensus 303 ~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~ 346 (432)
.++|..+++-+.++-.+.++--.-|+.+-++|-..|..|-++.-
T Consensus 252 iniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 252 INIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY 295 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55666666666666677777777788888888888888877553
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=34.90 E-value=53 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhH
Q 047081 145 KDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFE 189 (432)
Q Consensus 145 ~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe 189 (432)
-..|+. |.|.....+.|++ .|||-|...-+.-+..-+|+
T Consensus 108 ~~~Ls~--fGpI~SVT~cGrq----savVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 108 IQRLSV--FGPIQSVTLCGRQ----SAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred HHHHHh--cCCcceeeecCCc----eEEEEehhhHHHHHHHHhhc
Confidence 446899 9998887776654 58999988766555444443
No 185
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=34.59 E-value=1.2e+02 Score=26.36 Aligned_cols=43 Identities=33% Similarity=0.489 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh----hhHHHHHhhhccccc
Q 047081 385 KLAEDQKIEKEELHNKIIQLEKQLDAKQ----ALELEIERLRGTSKC 427 (432)
Q Consensus 385 kL~e~hkreKe~~~~kil~LEkqLd~kQ----~LELEi~qLkG~L~V 427 (432)
+.|.+-+++...+-.|..+|+++|..+. .|..++..||-.++-
T Consensus 37 ~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 37 KMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999999999999998 556666666654443
No 186
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=34.36 E-value=86 Score=28.30 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=45.0
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC--CCCceeEEEEeCCCccchHHHHhhH
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF--RGHSGCALVQFNKNWPGLDNAMAFE 189 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~gh~g~avv~F~~~w~Gf~~A~~fe 189 (432)
+.++.|-|++. ..+...|.+.|.. |.+. .++..+.. .-..|++.|.|...-....--..+.
T Consensus 115 ~~~l~v~nL~~---------~~~~~~l~~~F~~--~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPY---------DVTEEDLRELFKK--FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCC---------CCCHHHHHHHHHh--cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 68888999986 3467889999999 8876 66666654 3489999999998755544444443
No 187
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=34.35 E-value=48 Score=28.34 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=25.6
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
+.+|.|.|+ ..|...| -..|+. |++ =++++|-.+-+ |.|||+|.+-
T Consensus 4 ~L~V~NLP~--~~d~~~I---~~RL~q-Lsd--NCGGkVl~v~~-----~tAilrF~~~ 49 (90)
T PF11608_consen 4 LLYVSNLPT--NKDPSSI---KNRLRQ-LSD--NCGGKVLSVSG-----GTAILRFPNQ 49 (90)
T ss_dssp EEEEES--T--TS-HHHH---HHHHHH-HHH--TTT--EEE--T-----T-EEEEESSH
T ss_pred EEEEecCCC--CCCHHHH---HHHHHH-Hhh--ccCCEEEEEeC-----CEEEEEeCCH
Confidence 567899997 2232222 334444 888 88999998842 6899999874
No 188
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=34.30 E-value=23 Score=22.95 Aligned_cols=20 Identities=30% Similarity=0.683 Sum_probs=15.3
Q ss_pred eeeccCCCCCCccccCcHHHHhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
...||.|+++ |....|..|.
T Consensus 2 l~~C~~CgR~----F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRK----FNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCE----ECHHHHHHHH
Confidence 4579999874 6777788774
No 189
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=34.13 E-value=6.6e+02 Score=27.55 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 047081 252 KNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQK 331 (432)
Q Consensus 252 ~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~ 331 (432)
..+.|..|...|...+.-+.-......+.......++.+++.....|..++..-+..-..=-..| .....|...|..-.
T Consensus 170 ~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~ 248 (522)
T PF05701_consen 170 NEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEAS 248 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34456666666666666555555545554444445555566666666655443332222222222 33344444555444
Q ss_pred HHHHHhhhHHHHHH
Q 047081 332 KELEFLGVDLQKRE 345 (432)
Q Consensus 332 ~eL~~r~~eL~k~~ 345 (432)
.++..--.+|....
T Consensus 249 ~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 249 AELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444433
No 190
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.04 E-value=4.3e+02 Score=25.38 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQ---GYNEEIKKIQLSAQ 310 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~---~~neEi~kmq~~a~ 310 (432)
|.+++.+.+-+...++.+.+|+..+.+.-.+|..+|-....+.. .+...+.+.+..|.
T Consensus 16 n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 16 NALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556677778888888888888888888877654443 33344555444443
No 191
>PRK13401 30S ribosomal protein S18; Provisional
Probab=33.79 E-value=62 Score=27.26 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=28.0
Q ss_pred eeccCCCCCCc-cccCcHHHHhhhh-ccCC-CCccCh-HHHHhHHHHHHHHHhh
Q 047081 41 FTCPYCPKKRK-HDYLYKDLLQHAS-GIGN-SSKRSA-KEKANHLALAKFLETD 90 (432)
Q Consensus 41 ~~CP~C~~~kk-~~y~~~~LlqHA~-gvg~-~~~r~a-k~ka~HlaLak~L~~d 90 (432)
=.||||..+-. -||.=-+||.+=. ..|. =+.|-+ --...|+.|+++++.-
T Consensus 14 k~c~~~~~~~~~iDYKnv~lL~~Fis~~GkIlpRR~TGl~~k~QR~l~~AIKrA 67 (82)
T PRK13401 14 KKNLLDSLGIESVDYKDTALLRTFISDRGKIRSRRVTGLTVQQQRQVATAIKNA 67 (82)
T ss_pred CCCCcccCCCCcCCccCHHHHHHhcCCCccCcCcccCCcCHHHHHHHHHHHHHH
Confidence 46999986642 3674444555433 3231 012222 2345789999998764
No 192
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=33.70 E-value=88 Score=29.16 Aligned_cols=94 Identities=11% Similarity=0.163 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 239 KTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEE----MKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQ 314 (432)
Q Consensus 239 KTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~----lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~ 314 (432)
++..|++.--..-.+.++.+|.+.+......++. ++.........|.++.++-.+-|..-.+...+++.....-++
T Consensus 23 ~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq 102 (155)
T PF07464_consen 23 QNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQ 102 (155)
T ss_dssp --SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3334444333334445555555544444444432 444444444555555444333344444444455555556666
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 047081 315 RIFTEHENFKLQLEAQKK 332 (432)
Q Consensus 315 ~I~~e~ekl~~eLe~k~~ 332 (432)
.++.+.+++-.+|.+.+.
T Consensus 103 ~l~~E~qk~~k~v~~~~~ 120 (155)
T PF07464_consen 103 SLVQESQKLAKEVSENSE 120 (155)
T ss_dssp HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655543
No 193
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.64 E-value=4.8e+02 Score=25.79 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 296 QGYNEEIKKIQLSAQYHFQRIFTEHENFK------LQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 296 ~~~neEi~kmq~~a~~~~~~I~~e~ekl~------~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
..|.++++..+..-.+...+|..=-++++ ..|+.+..+++.-...|..-...+..+|..|+.++..
T Consensus 15 ~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 15 RQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665555544444433222222 3455555555555555555555556666666655544
No 194
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=33.63 E-value=3.2e+02 Score=26.37 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=37.0
Q ss_pred CcceeeecccCCCCCCcchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 047081 210 SGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMK 274 (432)
Q Consensus 210 ~~LYGw~AradD~~~~~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE 274 (432)
+.+|+-.|..|.+....++.+|+|--| +|.++...-. +.-....++...+..+...+..|+
T Consensus 83 ~~~~~~qa~~d~~~l~e~L~eY~r~i~---svk~~f~~R~-~a~~~~q~a~~~l~kkr~~~~Kl~ 143 (224)
T cd07623 83 EQLHGEQADTDFYILAELLKDYIGLIG---AIKDVFHERV-KVWQNWQNAQQTLTKKREAKAKLE 143 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888877788888887554 4555444322 333334445555555555544443
No 195
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.40 E-value=2.5e+02 Score=26.59 Aligned_cols=34 Identities=35% Similarity=0.418 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047081 377 QKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDA 410 (432)
Q Consensus 377 ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~ 410 (432)
++||+=|.-=.=.|.||-|+++.+|..||..+..
T Consensus 110 ~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 110 QKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655668999999999999999988876
No 196
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=33.37 E-value=6e+02 Score=26.79 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=25.5
Q ss_pred cCCCCCCccccCcHHHHhhhhcc-CCCCccChHHHHhHHHHHHHHHhhcc
Q 047081 44 PYCPKKRKHDYLYKDLLQHASGI-GNSSKRSAKEKANHLALAKFLETDLS 92 (432)
Q Consensus 44 P~C~~~kk~~y~~~~LlqHA~gv-g~~~~r~ak~ka~HlaLak~L~~dl~ 92 (432)
-||+.. ++++|-.|-+.+ +.+ +..+.---..|+-+|....|
T Consensus 16 ~f~~~~-----~~kpl~r~yFa~~~~N---p~eQF~~F~~L~~WL~~~~g 57 (359)
T PF10498_consen 16 DFCKKR-----KMKPLSRHYFAVPSTN---PGEQFYYFTSLCAWLISKAG 57 (359)
T ss_pred HHhhhc-----CCCCCCHHHhcCCCCC---chHHHHHHHHHHHHHHHhcC
Confidence 377642 267777787763 222 23445555678888888777
No 197
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.34 E-value=14 Score=28.18 Aligned_cols=13 Identities=23% Similarity=0.920 Sum_probs=9.8
Q ss_pred CeeeccCCCCCCc
Q 047081 39 ETFTCPYCPKKRK 51 (432)
Q Consensus 39 ~~~~CP~C~~~kk 51 (432)
..|+||.|...|.
T Consensus 33 ~~w~CP~C~a~K~ 45 (50)
T cd00730 33 DDWVCPVCGAGKD 45 (50)
T ss_pred CCCCCCCCCCcHH
Confidence 3699999976543
No 198
>CHL00077 rps18 ribosomal protein S18
Probab=33.05 E-value=68 Score=27.27 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=28.4
Q ss_pred eeccCCCCCCccccCcHHHHhhhhccCCC--CccCh-HHHHhHHHHHHHHHhh
Q 047081 41 FTCPYCPKKRKHDYLYKDLLQHASGIGNS--SKRSA-KEKANHLALAKFLETD 90 (432)
Q Consensus 41 ~~CP~C~~~kk~~y~~~~LlqHA~gvg~~--~~r~a-k~ka~HlaLak~L~~d 90 (432)
=.||||++. .-||.=-.||.+=.+..|- +.|-+ --...|+.|+++++.-
T Consensus 18 k~~~~~~~~-~iDYKnv~lL~~Fis~~GkIlpRriTGl~~K~QR~l~~aIKrA 69 (86)
T CHL00077 18 RLPPIQSGD-RIDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQA 69 (86)
T ss_pred CCCCCCCCC-cCCccCHHHHHHhcCCCCeEcCcccCCcCHHHHHHHHHHHHHH
Confidence 349999974 3466444566653332111 12222 3346889999998763
No 199
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=32.49 E-value=9.2e+02 Score=28.66 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLE 405 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LE 405 (432)
.+.--.|.|..+.+++++-.+..+|.
T Consensus 617 re~~R~l~E~e~i~~k~~ke~~~~~~ 642 (988)
T KOG2072|consen 617 REAKRILREKEAIRKKELKERLEQLK 642 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444444444444443
No 200
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=32.48 E-value=86 Score=31.33 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=36.5
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
.+.|-|+|. -.+..+|++.|+. |.| ..|+.+.++. | +.||+.|.|...
T Consensus 5 ~l~V~nLp~---------~~~e~~l~~~F~~--~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 5 NLIVNYLPQ---------TMTQEEIRSLFTS--IGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHc--cCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 366888886 3478899999999 777 4567776543 4 789999999764
No 201
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=32.43 E-value=4.5e+02 Score=25.02 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.8
Q ss_pred hhhHHHHHhhhcccccc
Q 047081 412 QALELEIERLRGTSKCD 428 (432)
Q Consensus 412 Q~LELEi~qLkG~L~Vm 428 (432)
..|+.|...|+..|+|-
T Consensus 163 ~qL~~EN~~LRelL~Is 179 (181)
T PF05769_consen 163 AQLETENKGLRELLQIS 179 (181)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45789999999988874
No 202
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=32.00 E-value=8.8e+02 Score=28.30 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=0.0
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 241 ISGLVEEEAR--KKNLLVSNLTNTIEVKNKHLEEMKERCI-------ETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQY 311 (432)
Q Consensus 241 i~ei~~e~~r--k~~~lv~~L~~~i~~kn~~l~~lE~k~~-------~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~ 311 (432)
|..++.|+.. |..-.-.+.-.++-.|.+...-|+.|.| .-...|.+.+..++.+...+.|
T Consensus 455 I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E----------- 523 (961)
T KOG4673|consen 455 INQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQE----------- 523 (961)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhH-HHHhhhhhHHHHHHHHH
Q 047081 312 HFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLAT-LEQQKADDNVRKLAEDQ 390 (432)
Q Consensus 312 ~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~-~EQ~kade~vlkL~e~h 390 (432)
..+|+..+++.+...+-.--...+.+++++-....-++.-+. .||.++ ++|-.|.+.--.||
T Consensus 524 -------~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~-------Dlqk~nrlkQdear~~~~~lv--- 586 (961)
T KOG4673|consen 524 -------TIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS-------DLQKENRLKQDEARERESMLV--- 586 (961)
T ss_pred -------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHhhhhhhHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHhHH-hhhHHHHHhhhcccc
Q 047081 391 KIEKEELHNKIIQLEKQLDAK-QALELEIERLRGTSK 426 (432)
Q Consensus 391 kreKe~~~~kil~LEkqLd~k-Q~LELEi~qLkG~L~ 426 (432)
.+=+++.-++..-|.++.-+ +-+--||.+|...|+
T Consensus 587 -qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlq 622 (961)
T KOG4673|consen 587 -QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQ 622 (961)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 203
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=31.53 E-value=88 Score=32.67 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=38.5
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
++.|.|+|. ..+...|.+.|+.-| ....|+.+.+.. | ..|++.|.|..- ..-..|+.
T Consensus 91 ~l~V~nlp~---------~~~~~~l~~~F~~~G-~v~~v~i~~d~~~~~skg~afVeF~~~-e~A~~Al~ 149 (457)
T TIGR01622 91 TVFVLQLAL---------KARERDLYEFFSKVG-KVRDVQCIKDRNSRRSKGVAYVEFYDV-ESVIKALA 149 (457)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 466899987 336778999999944 345566665433 3 689999999763 34444443
No 204
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=31.27 E-value=31 Score=35.99 Aligned_cols=28 Identities=32% Similarity=0.690 Sum_probs=20.8
Q ss_pred HhhhHHHHHHhhhcCCceEeecCCeeeccCCCCC
Q 047081 16 MVDYEDRSYEKLKSGNYNVKISDETFTCPYCPKK 49 (432)
Q Consensus 16 i~~y~~~~Y~~Lk~g~~~vk~~~~~~~CP~C~~~ 49 (432)
|-|..+++|+.-+=| ++..||||.|..+
T Consensus 266 l~eC~~~f~~~e~L~------g~d~W~CpkC~~k 293 (415)
T COG5533 266 LQECIDRFYEEEKLE------GKDAWRCPKCGRK 293 (415)
T ss_pred HHHHHHHhhhHHhhc------CcccccCchhccc
Confidence 456778888765544 5678999999865
No 205
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.26 E-value=5.2e+02 Score=25.44 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHH-HHHhhc
Q 047081 270 LEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQ-KREAKN 348 (432)
Q Consensus 270 l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~-k~~~~~ 348 (432)
+..+-.-++---.++---+|+-.++++.|-++|+.-...++..+..++...-.+..+++......+.|-.+=. -+.+-+
T Consensus 4 ~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~ 83 (225)
T COG1842 4 FSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_pred HHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhcccccc
Q 047081 349 ENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTSKCD 428 (432)
Q Consensus 349 ~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L~Vm 428 (432)
+.--+..-++++. +-.+++-++.+-..+.....+|++++.+ ||..|.+++-+.++.
T Consensus 84 E~LAr~al~~~~~---------------------le~~~~~~~~~~~~~~~~~~~l~~~~~~---Le~Ki~e~~~~~~~l 139 (225)
T COG1842 84 EDLAREALEEKQS---------------------LEDLAKALEAELQQAEEQVEKLKKQLAA---LEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred cc
Q 047081 429 EA 430 (432)
Q Consensus 429 k~ 430 (432)
++
T Consensus 140 ~a 141 (225)
T COG1842 140 KA 141 (225)
T ss_pred HH
No 206
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.13 E-value=4.9e+02 Score=25.05 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhH
Q 047081 289 EEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVD 340 (432)
Q Consensus 289 eek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~e 340 (432)
|+-.+++..|-+||+.--..++..+.+++.....+..+++........|..+
T Consensus 23 EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 23 EDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888767777777777777666666666555555444443
No 207
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.09 E-value=1.2e+02 Score=30.65 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhh-hHHHHHhhhccccccc
Q 047081 390 QKIEKEELHNKIIQLEKQLDAKQA-LELEIERLRGTSKCDE 429 (432)
Q Consensus 390 hkreKe~~~~kil~LEkqLd~kQ~-LELEi~qLkG~L~Vmk 429 (432)
=+.|.+++..++.+|..++..... |+.|.++|+.-|....
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 356777888888888667766655 9999999999888754
No 208
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=30.82 E-value=7.4e+02 Score=27.11 Aligned_cols=122 Identities=21% Similarity=0.308 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---------HHHHH---
Q 047081 239 KTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEE---------IKKIQ--- 306 (432)
Q Consensus 239 KTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neE---------i~kmq--- 306 (432)
++|.-++++..-|.+.|-.-=...|+..|.-=|+=|.-.|..--.++++-.|++-|...|.++ |-++.
T Consensus 165 ~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~ 244 (552)
T KOG2129|consen 165 NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVH 244 (552)
T ss_pred HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCcccc
Confidence 334444444444444333333334444444455555556666666666666777777666552 22221
Q ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 307 ----LSAQYHFQRIFTEHENFKLQLEAQKKELE-----FLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 307 ----~~a~~~~~~I~~e~ekl~~eLe~k~~eL~-----~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
-.-..|++.+-.+.++||..|-+--+.-. -+..+-+-+++ |+...+||..|+++
T Consensus 245 gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~ree-n~rlQrkL~~e~er 307 (552)
T KOG2129|consen 245 GDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREE-NERLQRKLINELER 307 (552)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHH
Confidence 12346777777888888877765433332 23333333333 56666677666665
No 209
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.75 E-value=1.1e+03 Score=29.22 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=18.9
Q ss_pred hhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 047081 228 IGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTI 263 (432)
Q Consensus 228 iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i 263 (432)
+..-..+. +|.+-++-++...-+-+..|+.|.|.-
T Consensus 1497 vA~~vL~l-~lp~tpeqi~~L~~~I~e~v~sL~nVd 1531 (1758)
T KOG0994|consen 1497 VAEEVLAL-ELPLTPEQIQQLTGEIQERVASLPNVD 1531 (1758)
T ss_pred HHHHHHhc-cCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 44444444 666655555555555555555555543
No 210
>COG4311 SoxD Sarcosine oxidase delta subunit [Amino acid transport and metabolism]
Probab=30.64 E-value=21 Score=30.85 Aligned_cols=18 Identities=28% Similarity=1.019 Sum_probs=12.8
Q ss_pred eeeccCCCCCCccccCcH
Q 047081 40 TFTCPYCPKKRKHDYLYK 57 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~ 57 (432)
..+||||+..++-.|.|.
T Consensus 3 LI~CP~Cg~R~e~EFt~~ 20 (97)
T COG4311 3 LIPCPYCGERPEEEFTYA 20 (97)
T ss_pred eecCCCCCCCchhheeec
Confidence 368999998766666543
No 211
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=30.63 E-value=1.1e+03 Score=29.17 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=27.0
Q ss_pred hhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhh
Q 047081 363 AMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLR 422 (432)
Q Consensus 363 ~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLk 422 (432)
...-..++++..++.+.-.++..|-...+ .....++.+|...|.||-+|..|.
T Consensus 839 rke~E~~~k~~~~~~~~i~~l~~~~~e~k-------~~~~~~~~~l~~~~qle~~~~~l~ 891 (1294)
T KOG0962|consen 839 RKEIECLQKEVIEQEREISRLINLRNELK-------EEKQKIERSLARLQQLEEDIEELS 891 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33445566777777666555555544443 333344444444554444444443
No 212
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=30.17 E-value=5.9e+02 Score=25.77 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=59.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 047081 260 TNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGV 339 (432)
Q Consensus 260 ~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~ 339 (432)
.|.|.--|+.+..+|-..++. .|-.++.|.+.+.+.++ .-++|+.....+.-.|...+..-.+-++++..
T Consensus 24 ~~~i~si~~n~s~~e~~i~qi------~~~h~d~L~Ev~e~~~~----~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i 93 (280)
T COG5074 24 MNKILSINKNLSVYEKEINQI------DNLHKDLLTEVFEEQSR----KLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI 93 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 344555566665555444432 12233444444444333 34566777777888888888888888999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHH
Q 047081 340 DLQKREAKNENDRKALAEEIE 360 (432)
Q Consensus 340 eL~k~~~~~~~er~kl~~e~~ 360 (432)
.|.-..|++++-|+|+-+-++
T Consensus 94 hl~~k~aQae~~r~Kf~~~I~ 114 (280)
T COG5074 94 HLANKQAQAENVRQKFLKLIQ 114 (280)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 998889999999998865554
No 213
>PTZ00491 major vault protein; Provisional
Probab=30.06 E-value=5.7e+02 Score=30.18 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=13.1
Q ss_pred HHHhhHHHHHHHhhhhhHHHHHH
Q 047081 265 VKNKHLEEMKERCIETSNFIENL 287 (432)
Q Consensus 265 ~kn~~l~~lE~k~~~~s~sL~~~ 287 (432)
..+-.++.+|..=..|-.+|++-
T Consensus 630 it~VDvqsvEpvD~~tr~~LqkS 652 (850)
T PTZ00491 630 ITNVDVQSVEPVDERTRDSLQKS 652 (850)
T ss_pred EEEEeeeeeeecCHHHHHHHHHH
Confidence 44555666666666665555543
No 214
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.86 E-value=1.1e+03 Score=28.75 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=65.9
Q ss_pred eeecccCCCCCCcchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH------
Q 047081 214 GWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENL------ 287 (432)
Q Consensus 214 Gw~AradD~~~~~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~------ 287 (432)
|=+-..--+=+.|..| ++ .|=+-+..+.. +.++|..-|.+... ....+..++.+.+-..+.|..+
T Consensus 631 Gtl~~ksGlmsGG~s~---~~-wdek~~~~L~~----~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~ 701 (1141)
T KOG0018|consen 631 GTLIHKSGLMSGGSSG---AK-WDEKEVDQLKE----KKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQ 701 (1141)
T ss_pred eeEEeccceecCCccC---CC-cCHHHHHHHHH----HHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333455566666 33 34444444432 33444444444444 2225555555555444444443
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 047081 288 ----MEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFL 337 (432)
Q Consensus 288 ----meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r 337 (432)
+++++.-++.++.+|...+-... .++|.++.-+.-..+|+.+|++++.+
T Consensus 702 ~k~~l~~~~~El~~~~~~i~~~~p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 702 LKRSLEQNELELQRTESEIDEFGPEIS-EIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777776666666 77788888888888888888888765
No 215
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.70 E-value=6.6e+02 Score=26.18 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSA 309 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a 309 (432)
+..+..|..++...+..+.++-..|....-.+..+-.+...+....++|+.++-...
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~ 309 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSV 309 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888777777776676777776677766655443
No 216
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.64 E-value=1.1e+03 Score=28.55 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Q 047081 309 AQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKRE 345 (432)
Q Consensus 309 a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~ 345 (432)
+....|+..++.|+++.|++.-++--+.-+++++..+
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544444444444444433
No 217
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=29.51 E-value=72 Score=23.89 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHH---HHHHHHHHHHH
Q 047081 279 ETSNFIENLMEE---KDRLVQGYNEE 301 (432)
Q Consensus 279 ~~s~sL~~~mee---k~~l~~~~neE 301 (432)
.+|.|++++|+| |..+..+||++
T Consensus 5 ~iT~SM~~ai~eT~rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 5 KITDSMQKAIDETNRRREIQIAYNKE 30 (44)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999988 67889999986
No 218
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.35 E-value=1.1e+03 Score=28.64 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047081 384 RKLAEDQKIEKEELHNKIIQLEK 406 (432)
Q Consensus 384 lkL~e~hkreKe~~~~kil~LEk 406 (432)
-+|+...-.+|+.+....+++++
T Consensus 505 srl~a~~~elkeQ~kt~~~qye~ 527 (1195)
T KOG4643|consen 505 SRLHALKNELKEQYKTCDIQYEL 527 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555444444443
No 219
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.22 E-value=4.2e+02 Score=23.71 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=7.1
Q ss_pred eeeecccCCCCCC
Q 047081 213 YGWVARSDDHSLN 225 (432)
Q Consensus 213 YGw~AradD~~~~ 225 (432)
+||+.....+++.
T Consensus 14 ~G~~~~~~~~~~~ 26 (151)
T PF11559_consen 14 RGYPSDGLLFDSA 26 (151)
T ss_pred CCCCCCCccCccc
Confidence 5666655555443
No 220
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.20 E-value=9.6e+02 Score=27.88 Aligned_cols=171 Identities=22% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH-
Q 047081 245 VEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLM------------EEKDRLVQGYNEEIKKIQLSAQY- 311 (432)
Q Consensus 245 ~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~m------------eek~~l~~~~neEi~kmq~~a~~- 311 (432)
+.+.......+++-++..--...++|..||.+|.-.-.-++--| -|.++|...++..+.+--..+..
T Consensus 478 Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ekl~~khqa~~ekeak~~~a~ 557 (948)
T KOG0577|consen 478 EHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEKLARKHQAIGEKEAKAASAE 557 (948)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Q ss_pred ----HHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHH----
Q 047081 312 ----HFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNV---- 383 (432)
Q Consensus 312 ----~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~v---- 383 (432)
+-....+....|..=|++++++...+..++-..-..|.+-=++-.++--.. +-+.+.|.+|.|+.
T Consensus 558 EkKfqq~i~~qqkk~l~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~-------qKe~Lq~~qaeeEa~ll~ 630 (948)
T KOG0577|consen 558 EKKFQQHILGQQKKELKAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLR-------QKENLQQCQAEEEAGLLR 630 (948)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHH-------HHHHHHHHHHHHHhhHHH
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh---------HHHHHhhh
Q 047081 384 ---------------RKLAEDQKIEKEELHNKIIQLEKQLDAKQAL---------ELEIERLR 422 (432)
Q Consensus 384 ---------------lkL~e~hkreKe~~~~kil~LEkqLd~kQ~L---------ELEi~qLk 422 (432)
..|.--|.-|-.-+...+-.-|.|+|...+| |||+.||+
T Consensus 631 ~qrqy~ele~r~ykRk~l~~rH~leqql~redlnkketQ~d~ehalLlrqhE~treLE~rql~ 693 (948)
T KOG0577|consen 631 RQRQYLELECRRYKRKMLLARHELEQQLLREDLNKKETQKDLEHALLLRQHEATRELEYRQLN 693 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
No 221
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=29.16 E-value=9.8e+02 Score=27.96 Aligned_cols=151 Identities=18% Similarity=0.235 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 239 KTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERC---IETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQR 315 (432)
Q Consensus 239 KTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~---~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~ 315 (432)
++|.+||....+.....|+.|--.-+....-..+.|+.- -+.|--|...+.+....+.+|.+++.|--..|+--.-.
T Consensus 413 r~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ea~~~irlqy~~~~~~l~k~~~~a~gvlda 492 (828)
T PF04094_consen 413 RAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDIRLQYEAHAEDLAKRVDDARGVLDA 492 (828)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHhhhhhhhh
Confidence 456666655544444444443322222222222222221 22344444444555677788888888766555432211
Q ss_pred HHHHHHhhHHHHH----HHHHHHHHhhhHHHHHHhhcHH---HHHHHHHHHHHhhhccchhhHhHHHHhhh-hhHHHHHH
Q 047081 316 IFTEHENFKLQLE----AQKKELEFLGVDLQKREAKNEN---DRKALAEEIEKNAMRNSSLQLATLEQQKA-DDNVRKLA 387 (432)
Q Consensus 316 I~~e~ekl~~eLe----~k~~eL~~r~~eL~k~~~~~~~---er~kl~~e~~kn~~~~~~l~lA~~EQ~ka-de~vlkL~ 387 (432)
- ...|.--.+.+ ..+..|+.+++.|+++.+.-+. +|...-.+.+ -.||.-|---| -|..|+|-
T Consensus 493 a-aarErrAsE~eas~r~R~~ALEara~ALeERAr~~e~~L~~Re~a~a~Re--------~TLAahEaa~AE~E~aLRLR 563 (828)
T PF04094_consen 493 A-AARERRASEAEASLRAREEALEARAKALEERARAAERSLEERERAAAQRE--------ATLAAHEAAAAEEESALRLR 563 (828)
T ss_pred h-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHH
Confidence 1 12333333433 4455678888888777654332 2222221222 12444444322 45666666
Q ss_pred HHHHHHHHHHH
Q 047081 388 EDQKIEKEELH 398 (432)
Q Consensus 388 e~hkreKe~~~ 398 (432)
|+-=.|-+..+
T Consensus 564 EeA~aER~~~~ 574 (828)
T PF04094_consen 564 EEALAERDRAL 574 (828)
T ss_pred HHHHHHHHHHH
Confidence 66544444333
No 222
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=28.90 E-value=8.1e+02 Score=26.93 Aligned_cols=9 Identities=11% Similarity=0.154 Sum_probs=5.3
Q ss_pred eeeccCCCC
Q 047081 40 TFTCPYCPK 48 (432)
Q Consensus 40 ~~~CP~C~~ 48 (432)
.+.++|++|
T Consensus 15 ~~~i~f~~g 23 (563)
T TIGR00634 15 VLTVEFERG 23 (563)
T ss_pred eeEEecCCC
Confidence 456666654
No 223
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=28.89 E-value=4.1e+02 Score=24.07 Aligned_cols=75 Identities=27% Similarity=0.381 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 239 KTISGLVEEEARKKNLLVSNLTNTI-EVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIF 317 (432)
Q Consensus 239 KTi~ei~~e~~rk~~~lv~~L~~~i-~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~ 317 (432)
|||.-++.+..+-.+.++.-...+= ..++.-+++||....+--....+..-|+ +-.|+|+
T Consensus 27 kTI~~L~e~A~qh~~~Il~eye~mk~~~~~~Sie~leq~~~~w~~~rEki~~e~-------------------eaLQ~IY 87 (125)
T PF13256_consen 27 KTIDTLKEQAEQHKEQILHEYEGMKKKVKVTSIEELEQAIVEWKQGREKIVAER-------------------EALQNIY 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
Confidence 4555666555555555544443321 1223344455544444444444444444 4455566
Q ss_pred HHHHhhHHHHHHHHH
Q 047081 318 TEHENFKLQLEAQKK 332 (432)
Q Consensus 318 ~e~ekl~~eLe~k~~ 332 (432)
.+.+...+++....+
T Consensus 88 ~eie~~ynq~qe~~k 102 (125)
T PF13256_consen 88 TEIEDYYNQIQEELK 102 (125)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666666554433
No 224
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=28.83 E-value=1.6e+02 Score=29.97 Aligned_cols=42 Identities=40% Similarity=0.423 Sum_probs=30.5
Q ss_pred HhHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHH-hHHh
Q 047081 371 LATLEQQKADDNVRKLAEDQKIEK----EELHNKIIQLEKQL-DAKQ 412 (432)
Q Consensus 371 lA~~EQ~kade~vlkL~e~hkreK----e~~~~kil~LEkqL-d~kQ 412 (432)
-|+-.+--|--.|++.+|+||-|- +.+.++|.+||++- +.|+
T Consensus 238 ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~~kr 284 (290)
T PF07899_consen 238 EANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKADRKR 284 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHHhh
Confidence 444455555677999999999554 45888999999987 4443
No 225
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=28.83 E-value=8.1e+02 Score=26.89 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhHHHH
Q 047081 391 KIEKEELHNKIIQLEKQLDAKQALELEI 418 (432)
Q Consensus 391 kreKe~~~~kil~LEkqLd~kQ~LELEi 418 (432)
+.+.+++..++..|..++...+.|+-..
T Consensus 217 ~~~leeae~~l~~L~~e~~~~k~Le~kL 244 (522)
T PF05701_consen 217 EKELEEAEEELEELKEELEAAKDLESKL 244 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777777777776666533
No 226
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=28.79 E-value=5.6e+02 Score=25.01 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhh
Q 047081 297 GYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAK 347 (432)
Q Consensus 297 ~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~ 347 (432)
.|..++.+.+....+...+.-......-..|+.-+...+.+|.++++....
T Consensus 97 ~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~ 147 (234)
T cd07652 97 SLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTG 147 (234)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445555554555555555555555666777788888888888865543
No 227
>PF06054 CoiA: Competence protein CoiA-like family; InterPro: IPR010330 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Many of the members of this family are described as transcription factors. CoiA falls within a competence-specific operon in Streptococcus. CoiA is an uncharacterised protein.
Probab=28.35 E-value=89 Score=32.81 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=54.7
Q ss_pred CCeeeccCCCCCC--ccccCcHHHHhhhhccCCCCccChHHHHhHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC-CCCe
Q 047081 38 DETFTCPYCPKKR--KHDYLYKDLLQHASGIGNSSKRSAKEKANHLALAKFLETDLSDVGSQSKPVNGVDPLNVC-SDGK 114 (432)
Q Consensus 38 ~~~~~CP~C~~~k--k~~y~~~~LlqHA~gvg~~~~r~ak~ka~HlaLak~L~~dl~~~~~~~~~~~~~~p~~~~-~de~ 114 (432)
.+.|.||.|++.- +..-.-.+=-.|-++..-. --+.++-+.|+..-..|-.-+...+-++- ...+.|. .. .-|.
T Consensus 28 ~~~~~CP~C~~~v~lk~G~~k~~HFAH~~~~~c~-~~~~~ES~~Hl~~K~~l~~~l~~~~~~v~-lE~~l~~-~~qraDv 104 (375)
T PF06054_consen 28 KGKYFCPGCGEPVILKKGKKKIPHFAHKSKSDCP-FFSEGESEEHLQGKELLYQWLKRQGFPVE-LEVYLPE-IQQRADV 104 (375)
T ss_pred CCcEECCCCCCeeEEEEcCcccceeeecCCCCCC-cccCCchHHHHHHHHHHHHHHHhcCCceE-EeeecCC-CceeccE
Confidence 7799999997542 1111111114555443211 01245678888887777766655332211 1111121 01 3455
Q ss_pred eeccc---eEE-EeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeec
Q 047081 115 FVWPW---IGI-VVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLW 162 (432)
Q Consensus 115 ~VWPw---mgI-i~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~ 162 (432)
+|.=. ++| |.-.|. |.+++...-.. |.-.-+.++|
T Consensus 105 ~v~~~~~~~aiEiQ~S~i-----------s~~~l~~Rt~~--Y~~~G~~viW 143 (375)
T PF06054_consen 105 LVNNKGQRLAIEIQCSPI-----------SIEELKERTQG--YKSAGIQVIW 143 (375)
T ss_pred EEEcCCcEEEEEEEeCCC-----------CHHHHHHHHHH--HHHCCCeEEE
Confidence 44332 334 444443 67777775444 7777777777
No 228
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.24 E-value=7.2e+02 Score=26.11 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 047081 242 SGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIE 279 (432)
Q Consensus 242 ~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~ 279 (432)
++...+-.|+...+-.-+.+.+..|.-.+++.|..+..
T Consensus 329 ~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~ 366 (406)
T KOG3859|consen 329 NEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHE 366 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666776666666554444
No 229
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.18 E-value=1.7e+02 Score=30.16 Aligned_cols=43 Identities=30% Similarity=0.378 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hHHhhhHHHHHhhhccc
Q 047081 383 VRKLAEDQKIEKEELHNKIIQLEKQL----DAKQALELEIERLRGTS 425 (432)
Q Consensus 383 vlkL~e~hkreKe~~~~kil~LEkqL----d~kQ~LELEi~qLkG~L 425 (432)
+.|.=++++.|+|.++..+-.||+.= ++.+.||-||+.||--+
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888888888888753 56788899999888543
No 230
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.85 E-value=4.6e+02 Score=23.71 Aligned_cols=92 Identities=15% Similarity=0.274 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 240 TISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTE 319 (432)
Q Consensus 240 Ti~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e 319 (432)
|++|++---.|-...-++++..+++.-..-|......+...-..|..-+++-..+.+...+|+-.++. .+.+|-.+
T Consensus 29 s~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~----dv~~i~~d 104 (126)
T PF07889_consen 29 SFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE----DVSQIGDD 104 (126)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----hHHHHHHH
Confidence 56777755555555556666666665555555555555555666666677777777777777655443 33444444
Q ss_pred HHhhH---HHHHHHHHHHH
Q 047081 320 HENFK---LQLEAQKKELE 335 (432)
Q Consensus 320 ~ekl~---~eLe~k~~eL~ 335 (432)
...++ ..||.++.+|+
T Consensus 105 v~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 105 VDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 33332 34444544443
No 231
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.83 E-value=6.5e+02 Score=25.49 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 261 NTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKI 305 (432)
Q Consensus 261 ~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~km 305 (432)
++++.-...|++.|.+.+.....|...+++-+..+...++|...+
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667778888888888888888877777666666665543
No 232
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.75 E-value=7e+02 Score=25.80 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGY 298 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~ 298 (432)
+.-..+..|..+-...|..++++-.+-++++..|+.++.+-+.+...-
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~ 99 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKR 99 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555556666666666666666666666665544444333
No 233
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.74 E-value=6.9e+02 Score=25.76 Aligned_cols=30 Identities=43% Similarity=0.580 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA 413 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~ 413 (432)
|..+.||+ -||++++..|-.|..||++++.
T Consensus 218 DvRLkKl~----~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 218 DVRLKKLA----DEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 56677887 4677888999999888877554
No 234
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.64 E-value=5.4e+02 Score=24.47 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh----------------hHHHH----HHHHHHHHHHHHHHHHHH
Q 047081 244 LVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIET----------------SNFIE----NLMEEKDRLVQGYNEEIK 303 (432)
Q Consensus 244 i~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~----------------s~sL~----~~meek~~l~~~~neEi~ 303 (432)
--+++.+....||+-|-++|..-.++..++|...... +..|. ++-||. .-++++.
T Consensus 6 a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEq-----qR~~~L~ 80 (182)
T PF15035_consen 6 AYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQ-----QRSEELA 80 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHH-----HhHHHHH
Confidence 3467888999999999999999999999999988543 11222 222221 1233444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Q 047081 304 KIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKRE 345 (432)
Q Consensus 304 kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~ 345 (432)
.+-..-|++.+..-..|+.|..+|..-..+...=..+|...+
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666655555555555444
No 235
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Probab=27.62 E-value=2.4e+02 Score=24.51 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=29.6
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 268 KHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQ 306 (432)
Q Consensus 268 ~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq 306 (432)
..+.++=....+.+.+|+-+++=|+++.++|+| |.+||
T Consensus 64 ~~lhevmiA~~kA~lslq~~vqVRNKlv~AYqE-IMrMq 101 (102)
T PRK12728 64 VDLHDVMIAAQKASISLQLTVQIRNKVVEAYQE-IMRMQ 101 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 355555566678899999999999999999987 44454
No 236
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=27.50 E-value=42 Score=30.32 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.8
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+.|+|.|.-|.+ -+.+-+.|..|-.+
T Consensus 54 G~GqfyCi~CaR---yFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECAR---YFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhh---hhcchHHHHHHHhc
Confidence 468999999986 23478889999766
No 237
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.47 E-value=8.7e+02 Score=26.83 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=30.8
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 047081 235 NRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNK---HLEEMKERCIETSNFIENLMEEKDRLVQG 297 (432)
Q Consensus 235 ~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~---~l~~lE~k~~~~s~sL~~~meek~~l~~~ 297 (432)
.++|+.+.+.+..-...-+.|-+.|...+..++. +...+......+......+..|-+.+-++
T Consensus 274 ~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 274 ELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466666666666666655555555555554432 22233333333334444444444444444
No 238
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.37 E-value=3.6e+02 Score=22.39 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047081 380 DDNVRKLAEDQKIEKEELHNKIIQLEKQLDAK 411 (432)
Q Consensus 380 de~vlkL~e~hkreKe~~~~kil~LEkqLd~k 411 (432)
...|..|=..|.+-|..+-..|..|-.+|+++
T Consensus 45 r~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 45 RQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577777788888888888888888888765
No 239
>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []. The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].
Probab=27.33 E-value=1.6e+02 Score=23.81 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 047081 279 ETSNFIENLMEEKDRLVQGYNEEI 302 (432)
Q Consensus 279 ~~s~sL~~~meek~~l~~~~neEi 302 (432)
.++.++.++++||+.|+++..|-.
T Consensus 6 ~~~~~IQk~LdEN~~LI~~I~e~q 29 (65)
T PF05030_consen 6 ITTEQIQKMLDENDQLIQCIQEYQ 29 (65)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998887743
No 240
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=27.27 E-value=30 Score=30.23 Aligned_cols=12 Identities=50% Similarity=1.060 Sum_probs=10.1
Q ss_pred cCCeeeccCCCC
Q 047081 37 SDETFTCPYCPK 48 (432)
Q Consensus 37 ~~~~~~CP~C~~ 48 (432)
-+.+|.||+|..
T Consensus 19 L~k~FtCp~Cgh 30 (104)
T COG4888 19 LPKTFTCPRCGH 30 (104)
T ss_pred CCceEecCccCC
Confidence 478999999974
No 241
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.10 E-value=3.5e+02 Score=26.74 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=16.0
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcH
Q 047081 318 TEHENFKLQLEAQKKELEFLGVDLQKREAKNE 349 (432)
Q Consensus 318 ~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~ 349 (432)
.++.++..+++....+++.+.++|++.+.+.+
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~ 182 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVD 182 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544333
No 242
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=26.93 E-value=31 Score=24.83 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=7.8
Q ss_pred eeccCCCCCC
Q 047081 41 FTCPYCPKKR 50 (432)
Q Consensus 41 ~~CP~C~~~k 50 (432)
|+||.|+++.
T Consensus 1 m~Cp~Cg~~~ 10 (43)
T PF08271_consen 1 MKCPNCGSKE 10 (43)
T ss_dssp ESBTTTSSSE
T ss_pred CCCcCCcCCc
Confidence 6899998753
No 243
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.65 E-value=1.1e+03 Score=27.63 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=10.6
Q ss_pred CCCCccccchhhHHHHHHh
Q 047081 132 QDGRSVGESGSKLKDELIR 150 (432)
Q Consensus 132 ~dg~~~G~s~~~L~~~l~~ 150 (432)
.+|.+++.+......++..
T Consensus 107 ~~g~~~~~~~~~v~~~i~~ 125 (908)
T COG0419 107 VDGERIADGKKDVNEKIEE 125 (908)
T ss_pred cCcchhhhhhhhHHHHHHH
Confidence 3666666666555554443
No 244
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=26.61 E-value=27 Score=30.58 Aligned_cols=16 Identities=25% Similarity=0.769 Sum_probs=11.9
Q ss_pred ecCCeeeccCCCCCCc
Q 047081 36 ISDETFTCPYCPKKRK 51 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk 51 (432)
.-+-+|.||||---+.
T Consensus 19 ~ldt~FnClfcnHek~ 34 (109)
T KOG3214|consen 19 PLDTQFNCLFCNHEKS 34 (109)
T ss_pred chheeeccCccccccc
Confidence 3467899999975543
No 245
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=26.45 E-value=5.9e+02 Score=24.49 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhhHHH
Q 047081 301 EIKKIQLSAQYHFQRIFTEH-ENFKLQLEAQKKELEFLGVDLQ 342 (432)
Q Consensus 301 Ei~kmq~~a~~~~~~I~~e~-ekl~~eLe~k~~eL~~r~~eL~ 342 (432)
+|.++|........+.+++. +.|..+|.+.+++=+.+..+|-
T Consensus 120 kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeLy 162 (181)
T PF04645_consen 120 KISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMELY 162 (181)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777766666666644 7788888888777777766664
No 246
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=26.33 E-value=28 Score=32.37 Aligned_cols=10 Identities=30% Similarity=1.172 Sum_probs=7.5
Q ss_pred eeccCCCCCC
Q 047081 41 FTCPYCPKKR 50 (432)
Q Consensus 41 ~~CP~C~~~k 50 (432)
.+||||++..
T Consensus 1 m~cp~c~~~~ 10 (154)
T PRK00464 1 MRCPFCGHPD 10 (154)
T ss_pred CcCCCCCCCC
Confidence 4799998653
No 247
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=26.11 E-value=8.8e+02 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 047081 237 DLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERC 277 (432)
Q Consensus 237 dLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~ 277 (432)
.+.|..|.+.|+..-.+++|+.|.. +.....++.||.-.
T Consensus 114 ~~~~~~d~v~Ed~~~~Dq~idiL~~--Edp~~m~qaLe~le 152 (429)
T PF12297_consen 114 SQFTSADGVSEDAAMNDQMIDILSS--EDPGSMLQALEDLE 152 (429)
T ss_pred cccchhhhhhhhhhcccchhhhhhh--cChHHHHHHHHhhh
Confidence 4578888888888888888888873 45555666665443
No 248
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=26.06 E-value=6.3e+02 Score=24.72 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHhhcHHHHHHHHHHHHHhhhc------cchhhHhHH-HHhhhhhHHH
Q 047081 344 REAKNENDRKALAEEIEKNAMR------NSSLQLATL-EQQKADDNVR 384 (432)
Q Consensus 344 ~~~~~~~er~kl~~e~~kn~~~------~~~l~lA~~-EQ~kade~vl 384 (432)
-.+.-+.+|..+++|++..+.. -.|++||.. -+|--|...|
T Consensus 85 ~~~~~e~~r~~fekekqq~~~~~t~~LwdeSi~LAEkIV~QaiDtR~l 132 (228)
T PRK06800 85 QMKEIEAARQQFQKEQQETAYEWTELLWDQSFQLAEKIVNQAVDTRLL 132 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566777777777765544 346666652 2233354443
No 249
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.86 E-value=5.5e+02 Score=25.37 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=35.1
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 047081 262 TIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQ 330 (432)
Q Consensus 262 ~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k 330 (432)
.....+..++.++...-.+.-+|+..-.+++.|. |--+.-.+-+-|..+++.+|+.+++..
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~--------Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALK--------KQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555555555555554444433 222233445667888888888888754
No 250
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=25.71 E-value=84 Score=35.05 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=37.9
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCC
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNK 177 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~ 177 (432)
-|-.||-|.|- .. ....|+..|+.-||-..-+.|--...+-+||+.|.|..
T Consensus 117 k~rLIIRNLPf-~~--------k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~ 167 (678)
T KOG0127|consen 117 KWRLIIRNLPF-KC--------KKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKE 167 (678)
T ss_pred cceEEeecCCc-cc--------CcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEee
Confidence 79999999996 22 23378899999777666666644444588999999964
No 251
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.65 E-value=37 Score=24.16 Aligned_cols=10 Identities=30% Similarity=0.952 Sum_probs=7.9
Q ss_pred eeeccCCCCC
Q 047081 40 TFTCPYCPKK 49 (432)
Q Consensus 40 ~~~CP~C~~~ 49 (432)
+.+||+|.+.
T Consensus 5 ~v~CP~C~s~ 14 (36)
T PF03811_consen 5 DVHCPRCQST 14 (36)
T ss_pred eeeCCCCCCC
Confidence 4789999864
No 252
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.64 E-value=6.4e+02 Score=24.62 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 047081 255 LVSNLTNTIEVKNKHLEEMKERCI---ETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQK 331 (432)
Q Consensus 255 lv~~L~~~i~~kn~~l~~lE~k~~---~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~ 331 (432)
.+.-+.+.+..+....+++-.+|. .....+.++|++-++.+...-++-.+-...+...+++|..+.+.+..+|.+.-
T Consensus 10 ~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E 89 (207)
T PF05010_consen 10 AIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLE 89 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444443333333333333333 33456667777776666666666666666677777777777777777776654
Q ss_pred HHHH
Q 047081 332 KELE 335 (432)
Q Consensus 332 ~eL~ 335 (432)
...-
T Consensus 90 ~sfs 93 (207)
T PF05010_consen 90 KSFS 93 (207)
T ss_pred hhHH
Confidence 4443
No 253
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=25.44 E-value=28 Score=31.43 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=17.3
Q ss_pred CeeeccCCCCCCccc------cCcHHHHhhhhccC
Q 047081 39 ETFTCPYCPKKRKHD------YLYKDLLQHASGIG 67 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~------y~~~~LlqHA~gvg 67 (432)
..+|||.|++-+-.+ .++...+..-..-|
T Consensus 39 ~~LRC~vCqnqsiadSna~iA~dmR~~Vr~~i~~G 73 (126)
T PRK10144 39 SQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEG 73 (126)
T ss_pred HcCCCCCCCCCChhhcCCHHHHHHHHHHHHHHHcC
Confidence 358999999866322 24555555544444
No 254
>PRK01156 chromosome segregation protein; Provisional
Probab=25.42 E-value=1.1e+03 Score=27.28 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=6.7
Q ss_pred CCCccccchhhHHHHH
Q 047081 133 DGRSVGESGSKLKDEL 148 (432)
Q Consensus 133 dg~~~G~s~~~L~~~l 148 (432)
||.++..+...+.+.+
T Consensus 102 ~g~~~~~~~~~~~~~i 117 (895)
T PRK01156 102 DGSIIAEGFDDTTKYI 117 (895)
T ss_pred CCeeccccHHHHHHHH
Confidence 4444433333444433
No 255
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.21 E-value=6.8e+02 Score=24.81 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHhhhccccc
Q 047081 393 EKEELHNKIIQLEKQLDAKQALELEIERLRGTSKC 427 (432)
Q Consensus 393 eKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L~V 427 (432)
-+..+...+.+.+.=||.|-.|++||.--+.-|+.
T Consensus 274 l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 274 LREEMARQLREYQELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 34555566666777788899999999887776654
No 256
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.03 E-value=1.1e+03 Score=27.09 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=31.4
Q ss_pred cchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 226 NIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIE 264 (432)
Q Consensus 226 ~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~ 264 (432)
|.+...+.|-|++|--.|++.+..|+-+.+..-+.|..+
T Consensus 372 ~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~ 410 (852)
T KOG4787|consen 372 GGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNLE 410 (852)
T ss_pred cchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhccc
Confidence 667888899999999999999999987766665555443
No 257
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=29 Score=32.39 Aligned_cols=15 Identities=33% Similarity=0.842 Sum_probs=11.7
Q ss_pred CeeeccCCCCCCccc
Q 047081 39 ETFTCPYCPKKRKHD 53 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~ 53 (432)
..+|||.|++-+..|
T Consensus 43 ~~LRCp~CQNqsIad 57 (153)
T COG3088 43 EELRCPQCQNQSIAD 57 (153)
T ss_pred HhcCCCcCCCCChhh
Confidence 469999999977543
No 258
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=24.95 E-value=89 Score=30.16 Aligned_cols=36 Identities=25% Similarity=0.538 Sum_probs=27.4
Q ss_pred chhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 140 SGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 140 s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
+-.+|...|+. |.| +..+|-..-..|||.|+|..-=
T Consensus 23 ~k~eLE~~F~~--yG~--lrsvWvArnPPGfAFVEFed~R 58 (195)
T KOG0107|consen 23 TKRELERAFSK--YGP--LRSVWVARNPPGFAFVEFEDPR 58 (195)
T ss_pred chHHHHHHHHh--cCc--ceeEEEeecCCCceEEeccCcc
Confidence 56789999999 665 5566766666779999998653
No 259
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.85 E-value=1.1e+03 Score=27.18 Aligned_cols=7 Identities=29% Similarity=1.127 Sum_probs=4.2
Q ss_pred CeeeccC
Q 047081 39 ETFTCPY 45 (432)
Q Consensus 39 ~~~~CP~ 45 (432)
.+|.||.
T Consensus 363 ~~~~cpI 369 (717)
T PF10168_consen 363 LSYSCPI 369 (717)
T ss_pred CCCCcce
Confidence 4566665
No 260
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=24.76 E-value=1.1e+03 Score=27.28 Aligned_cols=98 Identities=18% Similarity=0.315 Sum_probs=70.1
Q ss_pred hhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH----------------
Q 047081 232 LRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLV---------------- 295 (432)
Q Consensus 232 LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~---------------- 295 (432)
.+++ .+.+-+|+.+.+.+ +..=...|+...+-+++|+.-+...|++|..-+.++.-|.
T Consensus 90 Ik~W-Kv~vesd~~qKErk-----Lqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT 163 (786)
T PF05483_consen 90 IKKW-KVQVESDLKQKERK-----LQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKET 163 (786)
T ss_pred HHHH-HhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHH
Confidence 4454 67777777655433 3334567888889999999888888999988888764333
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 047081 296 -----------QGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELE 335 (432)
Q Consensus 296 -----------~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~ 335 (432)
+.-.||.+.+=.--..++++.+..-+.||.+-++-..|+-
T Consensus 164 ~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~ 214 (786)
T PF05483_consen 164 CQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMH 214 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2333466666666677888888888999988888777664
No 261
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=24.57 E-value=1.2e+02 Score=32.88 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=38.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCcc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNWP 180 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w~ 180 (432)
.+.|-|++. ..+...|.+.|+. |.. ..++...+..| +.|++.|.|.+.-+
T Consensus 90 ~vfV~nLp~---------~~~~~~L~~~F~~--~G~i~~~~i~~~~~g~skg~afV~F~~~e~ 141 (562)
T TIGR01628 90 NIFVKNLDK---------SVDNKALFDTFSK--FGNILSCKVATDENGKSRGYGFVHFEKEES 141 (562)
T ss_pred ceEEcCCCc---------cCCHHHHHHHHHh--cCCcceeEeeecCCCCcccEEEEEECCHHH
Confidence 467888886 2357889999999 764 45666667667 88999999998654
No 262
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=24.45 E-value=1.4e+02 Score=31.66 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=37.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcce-eeecCC-CC-CceeEEEEeCCCccchHHHH
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRV-QSLWNF-RG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv-~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
.+.|-|+|. ..+...|.+.|.. |.++.. ..+... .| +.|++.|.|.. ...-..|+
T Consensus 297 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~-~~~a~~A~ 354 (509)
T TIGR01642 297 RIYIGNLPL---------YLGEDQIKELLES--FGDLKAFNLIKDIATGLSKGYAFCEYKD-PSVTDVAI 354 (509)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEecCCCCCcCeEEEEEECC-HHHHHHHH
Confidence 567788886 3477889999999 877554 344433 24 78999999964 33333444
No 263
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.45 E-value=7.6e+02 Score=25.13 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHH----------
Q 047081 253 NLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEK-------DRLVQGYNEEIKKIQLSA--QYHF---------- 313 (432)
Q Consensus 253 ~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek-------~~l~~~~neEi~kmq~~a--~~~~---------- 313 (432)
..-|..|-++|+..+...+++..+.+++...+.+.-.+- ......|.+-+|.||... ..|+
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfs 130 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFS 130 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHH
Confidence 344666777777777777777766666666555555443 344456667788888652 2222
Q ss_pred ----------------HHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHH
Q 047081 314 ----------------QRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEE 358 (432)
Q Consensus 314 ----------------~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e 358 (432)
+.|+..+..=+..|+.+...++..-.+|..+...++..+..|..+
T Consensus 131 D~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 131 DLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444555555555555555555444444444444433
No 264
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.44 E-value=1.3e+02 Score=31.68 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 047081 327 LEAQKKELEFLGVDLQKRE 345 (432)
Q Consensus 327 Le~k~~eL~~r~~eL~k~~ 345 (432)
|.+.+.+++.|-..|+.+.
T Consensus 142 l~~Ri~e~Eeris~lEd~~ 160 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRI 160 (370)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4455555555555555443
No 265
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=24.43 E-value=60 Score=24.18 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.5
Q ss_pred ccchhhHHHHHHhcCCCCcceee
Q 047081 138 GESGSKLKDELIRRGLHPTRVQS 160 (432)
Q Consensus 138 G~s~~~L~~~l~~~GF~p~kv~~ 160 (432)
..|+.+|+..|...||.|++|+.
T Consensus 5 ~LSd~eL~~~L~~~G~~~gPIt~ 27 (44)
T smart00540 5 RLSDAELRAELKQYGLPPGPITD 27 (44)
T ss_pred HcCHHHHHHHHHHcCCCCCCcCc
Confidence 46899999999999999999875
No 266
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=24.29 E-value=1.4e+02 Score=31.13 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=40.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHHhhHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMAFEKS 191 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~fe~~ 191 (432)
..+.|-|++. ..+...|++.|+. |..+ .++.+... .| ..|++.|+|.+--.--.-..+|...
T Consensus 194 ~~lfV~nLp~---------~vtee~L~~~F~~--fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 194 TNLYVTNLPR---------TITDDQLDTIFGK--YGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ceeEEeCCCC---------cccHHHHHHHHHh--cCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 4577889986 2366789999999 8754 45555443 34 5699999998754444333344443
No 267
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=24.23 E-value=43 Score=21.49 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=16.2
Q ss_pred eeeccCCCCCCccccCcHHHHhhhhc
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+|.|++|.. .+-+-..+-+|-.+
T Consensus 1 q~~C~~C~k---~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 1 QFYCDACDK---YFSSENQLKQHMKS 23 (27)
T ss_dssp -CBBTTTTB---BBSSHHHHHCCTTS
T ss_pred CCCcccCCC---CcCCHHHHHHHHcc
Confidence 589999973 34477778888554
No 268
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=24.18 E-value=8.1e+02 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Q 047081 250 RKKNLLVSNLTNTIEVKNKHLEEMK 274 (432)
Q Consensus 250 rk~~~lv~~L~~~i~~kn~~l~~lE 274 (432)
..-++.+..++.+....|..+.+|=
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~ 54 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELR 54 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888887773
No 269
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=23.92 E-value=58 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=16.9
Q ss_pred CceEeecCCeeeccCCCCCCccccCcHHHHhhhhcc
Q 047081 31 NYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGI 66 (432)
Q Consensus 31 ~~~vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~gv 66 (432)
++.|....+.|+|=.|+. .++.-+|++...+.
T Consensus 45 S~~i~~~k~~~~Cf~Cg~----~Gd~i~~v~~~~~~ 76 (97)
T PF01807_consen 45 SFSINPDKNRFKCFGCGK----GGDVIDFVMKYEGC 76 (97)
T ss_dssp -EEEETTTTEEEETTT------EE-HHHHHHHHHT-
T ss_pred ceEEECCCCeEEECCCCC----CCcHHhHHHHHhCC
Confidence 445555556666666653 24667777776664
No 270
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.62 E-value=8.3e+02 Score=25.25 Aligned_cols=100 Identities=21% Similarity=0.330 Sum_probs=56.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHH
Q 047081 316 IFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKE 395 (432)
Q Consensus 316 I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe 395 (432)
.+.-...|..+||..++|=.-|-=+|+-++|--.-.++|.++++-+ .+++.- -.-.++..++.-.+-++
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e---------~s~LkR--Enq~l~e~c~~lek~rq 84 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE---------YSALKR--ENQSLMESCENLEKTRQ 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------hhhhhh--hhhhHHHHHHHHHHHHH
Confidence 4444556677777777777777778888887655556666555543 233221 22234444444433333
Q ss_pred HHHH-------HHHHHHHHHhH----HhhhHHHHHhhhcccc
Q 047081 396 ELHN-------KIIQLEKQLDA----KQALELEIERLRGTSK 426 (432)
Q Consensus 396 ~~~~-------kil~LEkqLd~----kQ~LELEi~qLkG~L~ 426 (432)
.+.. .+-=||-||.. -..||-||.++|.-|+
T Consensus 85 Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 85 KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 22335666654 3467888888887665
No 271
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.55 E-value=1.5e+03 Score=28.21 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--
Q 047081 268 KHLEEMKERCIETSNFIENLMEEKD----------------RLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEA-- 329 (432)
Q Consensus 268 ~~l~~lE~k~~~~s~sL~~~meek~----------------~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~-- 329 (432)
.|--+||++|+.....-+++||=.+ +-+.+...||..+.----+--+-.-++|..|+.||-.
T Consensus 1114 e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdta 1193 (1320)
T PLN03188 1114 EQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTA 1193 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Q ss_pred -----------HHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhh
Q 047081 330 -----------QKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKA 379 (432)
Q Consensus 330 -----------k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~ka 379 (432)
.++|-+.-.---+++...-+.|-.++.++++| -.++....+-++.|.=|
T Consensus 1194 eav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~k-lkrkh~~e~~t~~q~~a 1253 (1320)
T PLN03188 1194 EAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK-LKRKHENEISTLNQLVA 1253 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
No 272
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.53 E-value=1.4e+03 Score=27.83 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 047081 263 IEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNE 300 (432)
Q Consensus 263 i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~ne 300 (432)
+..-...+..+.+...+...+|..+-+|++++...+-+
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~ 297 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETK 297 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777777777777777777766665554
No 273
>smart00355 ZnF_C2H2 zinc finger.
Probab=23.37 E-value=51 Score=19.51 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=12.8
Q ss_pred eeccCCCCCCccccCcHHHHhhh
Q 047081 41 FTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 41 ~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
|.|+.|+. .+..-..|..|-
T Consensus 1 ~~C~~C~~---~f~~~~~l~~H~ 20 (26)
T smart00355 1 YRCPECGK---VFKSKSALKEHM 20 (26)
T ss_pred CCCCCCcc---hhCCHHHHHHHH
Confidence 57999984 233555666663
No 274
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=23.31 E-value=14 Score=27.46 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=14.1
Q ss_pred ccchhhHHHHHHhcCCCCcceee
Q 047081 138 GESGSKLKDELIRRGLHPTRVQS 160 (432)
Q Consensus 138 G~s~~~L~~~l~~~GF~p~kv~~ 160 (432)
..|+.+|+.+|...|++|++|++
T Consensus 5 ~LSd~ELr~~L~~~G~~~GPIt~ 27 (43)
T PF03020_consen 5 SLSDEELREELREYGEPPGPITP 27 (43)
T ss_dssp CC-CCCCHHCCCCCT-S-----C
T ss_pred hcCHHHHHHHHHHcCCCCCCCCc
Confidence 46889999999999999998875
No 275
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=23.30 E-value=32 Score=25.86 Aligned_cols=10 Identities=30% Similarity=1.075 Sum_probs=4.3
Q ss_pred CCeeeccCCC
Q 047081 38 DETFTCPYCP 47 (432)
Q Consensus 38 ~~~~~CP~C~ 47 (432)
.+.|+||+|.
T Consensus 39 ~~~W~CPiC~ 48 (50)
T PF02891_consen 39 TPKWKCPICN 48 (50)
T ss_dssp S---B-TTT-
T ss_pred cCCeECcCCc
Confidence 3459999996
No 276
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.24 E-value=8.8e+02 Score=26.72 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=10.5
Q ss_pred ccCCCCCCcchhhhhhh
Q 047081 218 RSDDHSLNNIIGEHLRK 234 (432)
Q Consensus 218 radD~~~~~~iG~~LrK 234 (432)
.+|.++.+|+.|+.-+-
T Consensus 43 tpee~kalGiegDTP~D 59 (472)
T TIGR03752 43 SPEELKALGIEGDTPAD 59 (472)
T ss_pred CcchhHhcCCCCCCccc
Confidence 55666666777765544
No 277
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=23.15 E-value=3.4e+02 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHH---HHHHHHHHHHH
Q 047081 278 IETSNFIENLMEE---KDRLVQGYNEE 301 (432)
Q Consensus 278 ~~~s~sL~~~mee---k~~l~~~~neE 301 (432)
+.+|.|++++++| |.++..+||++
T Consensus 555 D~iT~sM~~Ai~ET~RRR~iQ~~yN~~ 581 (663)
T COG0556 555 DKITDSMQKAIDETERRREIQMAYNEE 581 (663)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888998887 67889999995
No 278
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.92 E-value=4.9e+02 Score=27.46 Aligned_cols=167 Identities=15% Similarity=0.253 Sum_probs=75.1
Q ss_pred CCCcc-ccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHhhhhhccCChhhhhccCCCCCc
Q 047081 133 DGRSV-GESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSG 211 (432)
Q Consensus 133 dg~~~-G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~~Gr~dW~~~~~~~~~ 211 (432)
+|..+ +..+..+.+.|...||.....+.-+...+...+..|+ |.+|+.+. .+-+.|.. .+|..=.. .....
T Consensus 114 ~g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~qpr~~~v~---dL~~~~~e-~ll~~~~~--~~R~~Irk--A~k~G 185 (406)
T PF02388_consen 114 DGEPIEGEENDELIENLKALGFRHQGFTKGYDDTIQPRWTYVK---DLTGFSEE-ELLKSFSK--KTRYNIRK--AEKKG 185 (406)
T ss_dssp TS-EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSSS-SEEEEE---EGCC-TCH-HCHHCS-H--HHHHHHHH--HHCTT
T ss_pred ccccccCcchHHHHHHHHhcCceecCcccCCCcccCccEEEEE---ECCCCCHH-HHHHHhcH--HHHHHHHH--hhcCc
Confidence 45555 7788899999999999987777655443433333332 45555443 23335542 22222111 11222
Q ss_pred ceeeecccCCCCCCc-chhhhhhhcc-CCCChH---HHHHH---HHH------HHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 047081 212 LYGWVARSDDHSLNN-IIGEHLRKNR-DLKTIS---GLVEE---EAR------KKNLLVSNLTNTIEVKNKHLEEMKERC 277 (432)
Q Consensus 212 LYGw~AradD~~~~~-~iG~~LrK~g-dLKTi~---ei~~e---~~r------k~~~lv~~L~~~i~~kn~~l~~lE~k~ 277 (432)
+-=-.+..+|++.+- +.-+.-...| .+++.+ .|... .++ .-...+++|..+++..++.+.+|+.++
T Consensus 186 V~vr~~~~e~l~~F~~l~~~T~~R~~f~~r~~~Yf~~l~~~f~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l 265 (406)
T PF02388_consen 186 VEVREGSREELDDFYDLYKETAERKGFSIRSLEYFENLYDAFGDKAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKL 265 (406)
T ss_dssp EEEEEE-CHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHhcCCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222445554331 1111111111 222211 11110 011 224566777777777777777777766
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 278 IETSNFIENLMEEKDRLVQGYNEEIKKIQLS 308 (432)
Q Consensus 278 ~~~s~sL~~~meek~~l~~~~neEi~kmq~~ 308 (432)
.+.- +..+...+-+..+.++..+|...++.
T Consensus 266 ~~~~-k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 266 EKNP-KKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HH-T-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCc-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 55555555555566666665555544
No 279
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.88 E-value=7.3e+02 Score=24.33 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 249 ARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHF 313 (432)
Q Consensus 249 ~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~ 313 (432)
.+...-.++.|...+......+..++..+.+....+.|+..+-+.......+|...+...|...+
T Consensus 49 ~~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~ 113 (211)
T PRK14160 49 EESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDV 113 (211)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456677777777777777777777777778888888877777777777777666665443
No 280
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.81 E-value=1.2e+03 Score=26.82 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 047081 246 EEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKL 325 (432)
Q Consensus 246 ~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~ 325 (432)
.+-.-+-+.+|..|+.+...--++++.|-.++.+.=..|+--+|++..-..----|+...-..+.+-+..+-.|.++|..
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~q 304 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQ 304 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 34444667788888888888888888888888887777777778877665444557777777777777777777776655
Q ss_pred HHHHHHHHH
Q 047081 326 QLEAQKKEL 334 (432)
Q Consensus 326 eLe~k~~eL 334 (432)
==.+.|++|
T Consensus 305 lK~s~mKel 313 (660)
T KOG4302|consen 305 LKASNMKEL 313 (660)
T ss_pred HHHHhHHHH
Confidence 444444444
No 281
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=22.73 E-value=7.4e+02 Score=24.38 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHH--HHHHHHhhhccchhhHhHHHHhhhhhHHHHH
Q 047081 309 AQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKAL--AEEIEKNAMRNSSLQLATLEQQKADDNVRKL 386 (432)
Q Consensus 309 a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl--~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL 386 (432)
...++.++.....++...++.-++..+..|++.+..... .+--..+ .+|.+|+. .-|.-|..+-++++.+-...
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~-~~~~~~~~~~ke~~K~~---~Kl~K~~~~~~k~~~~Y~~~ 180 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQA-VNRNANLVNVKQQEKLF---AKLAQSKQNAEDADRLYMQN 180 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666777888888889999986654321 0000000 12223321 22344455555666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 047081 387 AEDQKIEKEELHNKIIQLEKQLDAKQALELE 417 (432)
Q Consensus 387 ~e~hkreKe~~~~kil~LEkqLd~kQ~LELE 417 (432)
|+.-..-......... .-.+.=|.||-|
T Consensus 181 v~~l~~~~~~w~~~~~---~~c~~fq~lEee 208 (240)
T cd07672 181 ISVLDKIREDWQKEHV---KACEFFEKQECE 208 (240)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 5555433333333222 344555544433
No 282
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.44 E-value=7.6e+02 Score=27.22 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHh
Q 047081 397 LHNKIIQLEKQLD 409 (432)
Q Consensus 397 ~~~kil~LEkqLd 409 (432)
+...|.+|..||+
T Consensus 128 ~~~~l~~l~~~l~ 140 (472)
T TIGR03752 128 LQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 3444445555553
No 283
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.43 E-value=7.3e+02 Score=24.17 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHH
Q 047081 279 ETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDL 341 (432)
Q Consensus 279 ~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL 341 (432)
.+...|..+...-..|+....+|.....+.-......+..+...|...++..+..-..|-..|
T Consensus 89 ~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i 151 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI 151 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555555555544455555555555555555544444444333
No 284
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.41 E-value=4.9e+02 Score=24.91 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 047081 337 LGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA 413 (432)
Q Consensus 337 r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~ 413 (432)
+|.++.+.....-.++.+...+=-+. -.+|+++.++.++++.+++.+|+++|.+.++
T Consensus 118 ~C~e~~~~~~~~~~~~~~~~~~G~~~--------------------r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 118 TCAELGKEYREELEEEEEIYKEGLKI--------------------RQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 285
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.31 E-value=29 Score=39.24 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhcccccc
Q 047081 392 IEKEELHNKIIQLEKQLDAKQALELEIERLRGTSKCD 428 (432)
Q Consensus 392 reKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L~Vm 428 (432)
-|+..+-+|+-.+|.-...=..|++++++|...+.-.
T Consensus 288 Ee~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW 324 (722)
T PF05557_consen 288 EEKRSLQRKLERLEELEEELAELQLENEKLEDELNSW 324 (722)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655556666777777776666543
No 286
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=22.13 E-value=40 Score=28.84 Aligned_cols=11 Identities=36% Similarity=1.231 Sum_probs=8.7
Q ss_pred CCeeeccCCCC
Q 047081 38 DETFTCPYCPK 48 (432)
Q Consensus 38 ~~~~~CP~C~~ 48 (432)
-..|.||||..
T Consensus 34 ~a~y~CpfCgk 44 (90)
T PTZ00255 34 HAKYFCPFCGK 44 (90)
T ss_pred hCCccCCCCCC
Confidence 45799999964
No 287
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=22.09 E-value=4.9e+02 Score=30.49 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=40.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 047081 237 DLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSN 282 (432)
Q Consensus 237 dLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~ 282 (432)
-=||++.|..|-.-+.+|+++-|...+.+-.+++.+++.++-+-++
T Consensus 864 Q~k~vd~i~kel~Lp~~Q~~all~k~~kk~~~~~~~v~~~~ie~~l 909 (1011)
T KOG2036|consen 864 QHKSVDAIEKELNLPSNQLLALLTKAMKKLSKYFDEVEEKAIEETL 909 (1011)
T ss_pred ccCCHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4478999999999999999999999999999999999988876443
No 288
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=22.05 E-value=1.1e+03 Score=26.00 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHhhhHHH-HHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhh-hhHHHHHH----HHHHHHH
Q 047081 321 ENFKLQLEAQKKELEFLGVDLQ-KREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKA-DDNVRKLA----EDQKIEK 394 (432)
Q Consensus 321 ekl~~eLe~k~~eL~~r~~eL~-k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~ka-de~vlkL~----e~hkreK 394 (432)
++|+..-..++++|-.|.++.. +.++..+.-|+-|+..+.....+..---||.+..-+- |-.|+..+ =+-..-.
T Consensus 261 ekLqE~KalKLkeLleReedVRk~kE~L~dqkRqllE~kllhAe~kRd~ni~aiikkAkdddakV~EiaFI~TLea~NKR 340 (672)
T KOG4722|consen 261 EKLQEAKALKLKELLEREEDVRKKKEALKDQKRQLLEAKLLHAEDKRDKNIMAIIKKAKDDDAKVMEIAFIATLEADNKR 340 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHHHHhHHhh
Q 047081 395 EELHNKIIQLEKQLDAKQA 413 (432)
Q Consensus 395 e~~~~kil~LEkqLd~kQ~ 413 (432)
-++|.|.-..|..|..+|.
T Consensus 341 hdlLaK~~e~Eekl~E~ne 359 (672)
T KOG4722|consen 341 HDLLAKDAEVEEKLLEKNE 359 (672)
T ss_pred HHHHHhhHHHHHHHHHHHH
No 289
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.97 E-value=2.2e+02 Score=28.09 Aligned_cols=41 Identities=37% Similarity=0.504 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhccccccc
Q 047081 389 DQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTSKCDE 429 (432)
Q Consensus 389 ~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L~Vmk 429 (432)
+-..|.+++.+++.+|+.++..-+.|..|.++|+..|....
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 33567777888899999999999999999999999887644
No 290
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=21.74 E-value=3e+02 Score=22.18 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=41.5
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHhhhh
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFE 193 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe 193 (432)
|-|.|.+. .-| -+..+.+.|+.+||....+--. .+....++|.|.+.. ...|..|...|.
T Consensus 6 V~VlNgt~-------~~G-lA~~~a~~L~~~Gf~v~~~~n~---~~~~~~t~I~y~~~~--~~~A~~la~~l~ 65 (90)
T PF13399_consen 6 VEVLNGTG-------VSG-LAARVADALRNRGFTVVEVGNA---PSSDETTTIYYGPGD--EAAARELAAALG 65 (90)
T ss_pred EEEEECcC-------CcC-HHHHHHHHHHHCCCceeecCCC---CCCCCCEEEEECCCC--HHHHHHHHHHCC
Confidence 55667553 113 3667788899999998666433 333367788997766 778888998884
No 291
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=21.74 E-value=1.2e+02 Score=28.32 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=37.0
Q ss_pred eccceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCC--CC-CceeEEEEeCC
Q 047081 116 VWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNF--RG-HSGCALVQFNK 177 (432)
Q Consensus 116 VWPwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~--~g-h~g~avv~F~~ 177 (432)
|=-|+++|.++-- +. ....+.+.|+. |.+.+-.+|--. .| --|||+|++..
T Consensus 70 VEGwIi~VtgvHe-Ea--------tEedi~d~F~d--yGeiKNihLNLDRRtGy~KGYaLvEYet 123 (170)
T KOG0130|consen 70 VEGWIIFVTGVHE-EA--------TEEDIHDKFAD--YGEIKNIHLNLDRRTGYVKGYALVEYET 123 (170)
T ss_pred eeeEEEEEeccCc-ch--------hHHHHHHHHhh--cccccceeeccccccccccceeeeehHh
Confidence 3449999988864 33 34567889999 999998888533 24 45889999864
No 292
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.71 E-value=3e+02 Score=23.61 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCCCCCcchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHH
Q 047081 220 DDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENL 287 (432)
Q Consensus 220 dD~~~~~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~ 287 (432)
+|-.++-+||.-|-+. |++++..+-..+ +..+...|..-++.++.++.++.+.-.+|+.+
T Consensus 48 ~d~~vyk~VG~vlv~~----~~~e~~~~l~~r----~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 48 DDTPVYKSVGNLLVKT----DKEEAIQELKEK----KETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred CcchhHHHhchhhhee----cHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555678776665 666665444333 33334444455555555554444444444443
No 293
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=21.56 E-value=6.4e+02 Score=25.79 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHH
Q 047081 324 KLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIE 360 (432)
Q Consensus 324 ~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~ 360 (432)
+.|--..+++-..|.++=.++...+..+++|+++-..
T Consensus 279 r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~eeKe~ 315 (321)
T PF07946_consen 279 RQEEAQEKKEEKKREERERKLSKLSPEEQRKYEEKER 315 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333333333333344444456667777777764433
No 294
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.55 E-value=4.4e+02 Score=21.26 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 047081 259 LTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLG 338 (432)
Q Consensus 259 L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~ 338 (432)
|...|..-..++.-+..++.. ++.-+..++.-...|-..+..-+.++.+|+.+++...++|+..-
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~---------------~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSV---------------HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred hH
Q 047081 339 VD 340 (432)
Q Consensus 339 ~e 340 (432)
.|
T Consensus 68 ~~ 69 (69)
T PF14197_consen 68 AQ 69 (69)
T ss_pred cC
No 295
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=21.54 E-value=37 Score=31.78 Aligned_cols=8 Identities=38% Similarity=1.497 Sum_probs=6.5
Q ss_pred eccCCCCC
Q 047081 42 TCPYCPKK 49 (432)
Q Consensus 42 ~CP~C~~~ 49 (432)
+||||+..
T Consensus 2 ~CPfC~~~ 9 (156)
T COG1327 2 KCPFCGHE 9 (156)
T ss_pred CCCCCCCC
Confidence 79999854
No 296
>PRK12366 replication factor A; Reviewed
Probab=21.48 E-value=55 Score=36.82 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=12.7
Q ss_pred eEeecCCeeeccCCCCC
Q 047081 33 NVKISDETFTCPYCPKK 49 (432)
Q Consensus 33 ~vk~~~~~~~CP~C~~~ 49 (432)
+|-..++.|+||.|+..
T Consensus 541 Kv~~~~g~~~C~~c~~~ 557 (637)
T PRK12366 541 RVEEVDGEYICEFCGEV 557 (637)
T ss_pred EeEcCCCcEECCCCCCC
Confidence 45456788999999754
No 297
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.29 E-value=1.5e+03 Score=27.46 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Q 047081 254 LLVSNLTNTIEVKNKHLEEMKERC 277 (432)
Q Consensus 254 ~lv~~L~~~i~~kn~~l~~lE~k~ 277 (432)
.++-.|...|+.-...|.+.-.|.
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKn 427 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKN 427 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhC
Confidence 455555555666655555554443
No 298
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=21.18 E-value=3.5e+02 Score=24.55 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 047081 278 IETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLG 338 (432)
Q Consensus 278 ~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~ 338 (432)
++.+..|+.+++|-+++... ++...+--++|+.+-.-|..=..+|+.|+++.-
T Consensus 70 ~Eis~~L~~vieELdqi~~~--------~~~~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dl 122 (125)
T PF11944_consen 70 SEISPNLRYVIEELDQITGR--------EQAEVDLKQKILDDLRHLEKVVNSKIAEIERDL 122 (125)
T ss_pred hhccHHHHHHHHHHHHHHcc--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888777762 223445557888888888888888888887743
No 299
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.12 E-value=1.4e+03 Score=26.84 Aligned_cols=55 Identities=33% Similarity=0.367 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhccchhhHhHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 047081 350 NDRKALAEEIEKNAMRNSSLQLATLEQQKADD-----NVRKLAEDQKIEKEELHNKIIQLEKQLDAKQ 412 (432)
Q Consensus 350 ~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade-----~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ 412 (432)
.-.+.|+++++.....-....+|.-+.+-..+ -.-||||=|+ -|.-|-|||.+=+
T Consensus 701 ~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQe--------TI~sLGkQLksLa 760 (769)
T PF05911_consen 701 AKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQE--------TIASLGKQLKSLA 760 (769)
T ss_pred hHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHH--------HHHHHHHHHHhcC
Confidence 34566777777655443333344222211111 1234555444 5888888886643
No 300
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=21.11 E-value=3.6e+02 Score=30.98 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Q 047081 309 AQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKRE 345 (432)
Q Consensus 309 a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~ 345 (432)
.|.|+++-++-.-+|.-+|..-|-+|+.+.++|.+++
T Consensus 426 IR~~YE~KLertN~ly~eLs~cm~qLelkEkElaerE 462 (904)
T KOG4721|consen 426 IREHYERKLERTNNLYMELSACMLQLELKEKELAERE 462 (904)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777788888888888888888888888877
No 301
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=21.06 E-value=38 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=17.3
Q ss_pred CeeeccCCCCCCccc------cCcHHHHhhhhccC
Q 047081 39 ETFTCPYCPKKRKHD------YLYKDLLQHASGIG 67 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~------y~~~~LlqHA~gvg 67 (432)
..+|||.|++-+-.| .++...+..-..-|
T Consensus 39 ~~LRC~vCqnqsiadS~a~iA~dmR~~Vr~~i~~G 73 (126)
T TIGR03147 39 KSLRCPQCQNQNLVESNSPIAYDLRHEVYSMVNEG 73 (126)
T ss_pred HhCCCCCCCCCChhhcCCHHHHHHHHHHHHHHHcC
Confidence 458999999866322 24555555544444
No 302
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=21.01 E-value=42 Score=28.72 Aligned_cols=12 Identities=42% Similarity=1.262 Sum_probs=8.6
Q ss_pred CCeeeccCCCCC
Q 047081 38 DETFTCPYCPKK 49 (432)
Q Consensus 38 ~~~~~CP~C~~~ 49 (432)
...|.||||...
T Consensus 33 ~~ky~Cp~Cgk~ 44 (90)
T PF01780_consen 33 HAKYTCPFCGKT 44 (90)
T ss_dssp HS-BEESSSSSS
T ss_pred hCCCcCCCCCCc
Confidence 457999999754
No 303
>PHA03151 hypothetical protein; Provisional
Probab=20.91 E-value=34 Score=33.58 Aligned_cols=10 Identities=40% Similarity=1.531 Sum_probs=8.7
Q ss_pred CCCeeeccce
Q 047081 111 SDGKFVWPWI 120 (432)
Q Consensus 111 ~de~~VWPwm 120 (432)
...-|||||.
T Consensus 249 gN~cYvWPWl 258 (259)
T PHA03151 249 GNKCYVWPWL 258 (259)
T ss_pred cccccccccc
Confidence 6788999996
No 304
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.83 E-value=5.7e+02 Score=27.30 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHH
Q 047081 289 EEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQK 343 (432)
Q Consensus 289 eek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k 343 (432)
+++..+-..|.+.++.-++.-.+--++++.++..+..+|+....+|+...++|.+
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555566666666666555555555554444443
No 305
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.66 E-value=9.7e+02 Score=24.92 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 047081 252 KNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQ 296 (432)
Q Consensus 252 ~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~ 296 (432)
-.+||..-..++...|.++..|..-+...+.-..+.=+|-..|..
T Consensus 197 EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 197 EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655555554444444444444443
No 306
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=20.63 E-value=55 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=10.5
Q ss_pred cCCeeeccCCCCC
Q 047081 37 SDETFTCPYCPKK 49 (432)
Q Consensus 37 ~~~~~~CP~C~~~ 49 (432)
+..+.+||.|+..
T Consensus 16 ~~~~irC~~CG~r 28 (44)
T smart00659 16 SKDVVRCRECGYR 28 (44)
T ss_pred CCCceECCCCCce
Confidence 4678999999754
No 307
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.56 E-value=47 Score=30.83 Aligned_cols=15 Identities=20% Similarity=0.984 Sum_probs=12.4
Q ss_pred eecCCeeeccCCCCC
Q 047081 35 KISDETFTCPYCPKK 49 (432)
Q Consensus 35 k~~~~~~~CP~C~~~ 49 (432)
..++|.|.||.|..+
T Consensus 13 ~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 13 EVPEGDWICPFCEVE 27 (148)
T ss_pred CCCCCCcCCCCCcCC
Confidence 357899999999865
No 308
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=20.38 E-value=79 Score=20.96 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=17.7
Q ss_pred CeeeccCCCCCCcccc-CcHHHHhhhhc
Q 047081 39 ETFTCPYCPKKRKHDY-LYKDLLQHASG 65 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y-~~~~LlqHA~g 65 (432)
+.|.|.+|.- ++ +...+.+|-.|
T Consensus 2 ~~~~C~~C~~----~~~~~~~~~~H~~g 25 (35)
T smart00451 2 GGFYCKLCNV----TFTDEISVEAHLKG 25 (35)
T ss_pred cCeEccccCC----ccCCHHHHHHHHCh
Confidence 5699999974 34 57788999766
No 309
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.25 E-value=7.5e+02 Score=23.48 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 255 LVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQ 314 (432)
Q Consensus 255 lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~ 314 (432)
+.+.+...++.-+..+.+++....+...++-|+..|-+..-....+|+......|...+-
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~ 72 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFA 72 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555666666666666777788888888878888887777777665543
No 310
>PF14190 DUF4313: Domain of unknown function (DUF4313)
Probab=20.15 E-value=2.4e+02 Score=24.67 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=43.2
Q ss_pred cceEEEeccccccC-CCCCcc-ccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCC
Q 047081 118 PWIGIVVNIPTRRG-QDGRSV-GESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNK 177 (432)
Q Consensus 118 PwmgIi~N~~~~~~-~dg~~~-G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~ 177 (432)
||.++=||.+.... +|--.| .-....+.+.+.. ....++++.....|.+.+..|.|+-
T Consensus 28 ~~~~LTVNL~~~~~~~~~afId~n~~~~~~~fl~~--n~Lg~~tg~~~~SG~c~Yp~~~Fn~ 87 (105)
T PF14190_consen 28 PFADLTVNLPGMRALPDCAFIDTNNNPDALEFLKR--NKLGKPTGRTRRSGFCEYPEVAFNL 87 (105)
T ss_pred eEEEEEEeCCCcCCCCCcEEEeCCCCHHHHHHHHH--CCCCcccCcccccCceeeeEEEeCH
Confidence 79999999987332 333333 3444667777888 7788889888899999999999973
No 311
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=20.14 E-value=1.1e+03 Score=25.33 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047081 383 VRKLAEDQKIEKEELHNKIIQLE 405 (432)
Q Consensus 383 vlkL~e~hkreKe~~~~kil~LE 405 (432)
|-||+++-+.|-+-+.++.-.+|
T Consensus 243 vek~i~EfdiEre~LRAel~ree 265 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREE 265 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444333
No 312
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=20.09 E-value=67 Score=19.81 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=17.1
Q ss_pred eeccCCCCCCccccCcHHHHhhhhc
Q 047081 41 FTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 41 ~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
|.|+.|.. .+.+...|.+|-.|
T Consensus 1 ~~C~~C~~---~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNK---SFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTE---EESSHHHHHHHHTT
T ss_pred CCCCCCCC---CcCCHHHHHHHHCc
Confidence 78999963 45688889999665
No 313
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=20.06 E-value=2e+02 Score=29.86 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=36.6
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHH
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
++|-|+|. -.+..+|++.|+. |.++ .|+++... .| +.|++.|.|. +...-..|+
T Consensus 110 LfVgnLp~---------~~te~~L~~lF~~--~G~V~~v~i~~d~~tg~srGyaFVeF~-~~e~A~~Ai 166 (346)
T TIGR01659 110 LIVNYLPQ---------DMTDRELYALFRT--IGPINTCRIMRDYKTGYSFGYAFVDFG-SEADSQRAI 166 (346)
T ss_pred EEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCccCcEEEEEEc-cHHHHHHHH
Confidence 55778875 2367889999999 8765 45555443 23 6799999994 444445555
No 314
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=20.04 E-value=45 Score=27.31 Aligned_cols=10 Identities=40% Similarity=1.221 Sum_probs=8.1
Q ss_pred eeccCCCCCC
Q 047081 41 FTCPYCPKKR 50 (432)
Q Consensus 41 ~~CP~C~~~k 50 (432)
++||+|+...
T Consensus 2 m~CP~Cg~~a 11 (72)
T PRK09678 2 FHCPLCQHAA 11 (72)
T ss_pred ccCCCCCCcc
Confidence 7899998754
Done!