Query 047081
Match_columns 432
No_of_seqs 136 out of 155
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 7.6E-68 2.6E-72 485.7 13.4 168 111-278 5-172 (172)
2 2v71_A Nuclear distribution pr 95.9 1.1 3.8E-05 41.6 20.5 161 256-427 12-172 (189)
3 3ghg_A Fibrinogen alpha chain; 91.9 1.9 6.5E-05 45.6 13.4 95 242-336 52-149 (562)
4 3oja_B Anopheles plasmodium-re 91.7 3.6 0.00012 42.7 15.6 18 391-408 564-581 (597)
5 3oja_B Anopheles plasmodium-re 91.7 2.1 7.1E-05 44.5 13.7 62 300-361 505-566 (597)
6 1wez_A HnRNP H', FTP-3, hetero 91.4 0.14 4.7E-06 41.7 3.5 59 118-188 15-74 (102)
7 2dgw_A Probable RNA-binding pr 91.0 0.33 1.1E-05 37.8 5.2 58 119-188 11-69 (91)
8 2lmi_A GRSF-1, G-rich sequence 90.6 0.31 1.1E-05 39.5 5.0 60 119-190 12-76 (107)
9 2dnn_A RNA-binding protein 12; 90.0 0.33 1.1E-05 40.4 4.6 59 119-189 17-76 (109)
10 2fxo_A Myosin heavy chain, car 89.7 9 0.00031 32.9 16.8 50 312-361 66-115 (129)
11 2cq3_A RNA-binding protein 9; 89.2 0.66 2.3E-05 36.9 5.8 49 119-178 16-65 (103)
12 2dha_A FLJ20171 protein; RRM d 88.7 0.53 1.8E-05 40.1 5.1 58 119-188 24-87 (123)
13 3vkg_A Dynein heavy chain, cyt 88.7 28 0.00096 44.4 21.9 30 397-426 2040-2073(3245)
14 2hgm_A HNRPF protein, heteroge 88.0 0.52 1.8E-05 40.4 4.7 58 119-188 43-103 (126)
15 2dfs_A Myosin-5A; myosin-V, in 87.2 5 0.00017 45.9 13.3 25 270-294 923-947 (1080)
16 2hgn_A Heterogeneous nuclear r 87.1 0.42 1.4E-05 41.6 3.6 56 119-186 47-103 (139)
17 1wg5_A Heterogeneous nuclear r 87.0 0.67 2.3E-05 37.3 4.5 58 119-188 16-76 (104)
18 2cpy_A RNA-binding protein 12; 86.8 0.74 2.5E-05 37.7 4.7 57 120-188 17-76 (114)
19 2lxi_A RNA-binding protein 10; 86.7 0.99 3.4E-05 35.6 5.3 51 120-179 3-55 (91)
20 2db1_A Heterogeneous nuclear r 86.4 0.81 2.8E-05 37.9 4.8 59 119-189 18-81 (118)
21 2cqi_A Nucleolysin TIAR; RNA r 86.4 1.2 4E-05 35.3 5.7 57 119-187 16-73 (103)
22 2ywk_A Putative RNA-binding pr 86.3 1.2 3.9E-05 34.7 5.5 57 119-187 17-75 (95)
23 2dfs_A Myosin-5A; myosin-V, in 86.2 18 0.00063 41.3 17.2 9 19-27 523-531 (1080)
24 1i84_S Smooth muscle myosin he 86.2 2.9 9.8E-05 48.1 10.8 9 19-27 554-562 (1184)
25 1wi8_A EIF-4B, eukaryotic tran 85.7 0.8 2.7E-05 36.5 4.3 61 118-190 15-78 (104)
26 2cpe_A RNA-binding protein EWS 85.6 1.3 4.3E-05 35.8 5.5 57 119-187 16-83 (113)
27 2e5j_A Methenyltetrahydrofolat 85.5 1.1 3.9E-05 35.2 5.1 48 119-179 20-67 (97)
28 2err_A Ataxin-2-binding protei 85.4 1.2 4E-05 36.2 5.2 51 119-180 30-81 (109)
29 1x4a_A Splicing factor, argini 85.0 1.6 5.3E-05 35.1 5.8 56 119-186 23-78 (109)
30 3ulh_A THO complex subunit 4; 84.8 1.5 5.1E-05 34.9 5.6 49 119-178 30-80 (107)
31 1deq_A Fibrinogen (alpha chain 84.1 23 0.00077 36.2 14.8 114 219-341 41-157 (390)
32 3ghg_A Fibrinogen alpha chain; 84.0 6.1 0.00021 41.8 11.0 86 250-339 81-166 (562)
33 2dng_A Eukaryotic translation 83.8 1.1 3.9E-05 35.5 4.4 58 119-188 16-75 (103)
34 2do4_A Squamous cell carcinoma 83.2 1.7 5.7E-05 34.3 5.1 49 119-178 18-68 (100)
35 3d2w_A TAR DNA-binding protein 82.9 2.1 7.2E-05 33.6 5.6 48 118-179 11-59 (89)
36 2dgv_A HnRNP M, heterogeneous 82.8 1.8 6.3E-05 33.3 5.2 49 119-178 9-58 (92)
37 2dnh_A Bruno-like 5, RNA bindi 82.7 1.9 6.5E-05 34.1 5.3 51 118-179 15-67 (105)
38 1x5t_A Splicing factor 3B subu 82.1 2.8 9.6E-05 32.5 6.0 57 119-187 6-66 (96)
39 2hgl_A HNRPF protein, heteroge 81.7 1.5 5.2E-05 37.8 4.7 58 119-188 45-107 (136)
40 1s79_A Lupus LA protein; RRM, 81.6 2.8 9.6E-05 34.0 6.0 57 119-187 12-70 (103)
41 2la6_A RNA-binding protein FUS 81.2 2.5 8.5E-05 33.2 5.4 56 119-186 14-80 (99)
42 4f25_A Polyadenylate-binding p 81.0 1.7 5.9E-05 35.5 4.6 54 121-186 8-62 (115)
43 2ek1_A RNA-binding protein 12; 81.0 1.7 5.8E-05 33.7 4.4 58 118-187 15-75 (95)
44 3lqv_A PRE-mRNA branch site pr 80.7 2.8 9.4E-05 33.8 5.7 48 120-178 10-57 (115)
45 2cph_A RNA binding motif prote 80.6 3.1 0.00011 32.9 5.9 50 119-179 16-69 (107)
46 1wel_A RNA-binding protein 12; 80.6 1.5 5.3E-05 36.2 4.2 58 119-188 26-86 (124)
47 2kt5_A RNA and export factor-b 80.5 3.3 0.00011 34.0 6.2 57 119-187 36-94 (124)
48 1x5u_A Splicing factor 3B subu 80.0 3 0.0001 32.9 5.6 49 119-178 16-67 (105)
49 1whw_A Hypothetical protein ri 79.7 3.5 0.00012 32.2 5.8 49 119-178 9-60 (99)
50 2cq4_A RNA binding motif prote 79.6 4.2 0.00014 32.8 6.4 61 118-190 25-88 (114)
51 2mss_A Protein (musashi1); RNA 79.4 3.6 0.00012 30.4 5.5 55 121-187 2-59 (75)
52 2xs2_A Deleted in azoospermia- 79.0 2.9 0.0001 32.9 5.2 57 119-187 10-68 (102)
53 3nmr_A Cugbp ELAV-like family 79.0 3.1 0.00011 35.0 5.7 50 119-179 96-147 (175)
54 2fy1_A RNA-binding motif prote 78.8 3.9 0.00013 33.5 6.1 48 120-178 9-58 (116)
55 4a8x_A RNA-binding protein wit 78.5 3.1 0.0001 31.6 5.0 52 118-180 4-59 (88)
56 3sde_A Paraspeckle component 1 77.8 30 0.001 31.8 12.6 70 119-199 97-169 (261)
57 2krb_A Eukaryotic translation 77.7 4 0.00014 30.8 5.5 54 120-178 3-57 (81)
58 2f3j_A RNA and export factor b 77.6 3.7 0.00013 36.6 6.0 49 119-178 89-139 (177)
59 2do0_A HnRNP M, heterogeneous 77.6 3.1 0.00011 33.4 5.0 48 120-178 17-66 (114)
60 2ocy_A RAB guanine nucleotide 77.5 40 0.0014 30.2 18.3 66 345-423 74-143 (154)
61 2cqp_A RNA-binding protein 12; 77.4 2.5 8.5E-05 33.0 4.3 56 119-186 16-74 (98)
62 2cqg_A TDP-43, TAR DNA-binding 76.1 4.1 0.00014 32.1 5.3 56 120-187 17-75 (103)
63 2dgp_A Bruno-like 4, RNA bindi 76.0 4.6 0.00016 31.9 5.6 60 119-190 14-77 (106)
64 1rk8_A CG8781-PA, CG8781-PA pr 75.7 3.6 0.00012 35.7 5.3 58 118-187 72-132 (165)
65 3md3_A Nuclear and cytoplasmic 75.7 4 0.00014 33.9 5.4 55 120-186 2-58 (166)
66 2j76_E EIF-4B, EIF4B, eukaryot 75.7 2.1 7.3E-05 33.9 3.5 59 119-189 20-81 (100)
67 2cqc_A Arginine/serine-rich sp 75.6 4.8 0.00016 31.0 5.5 49 119-178 16-67 (95)
68 1x5s_A Cold-inducible RNA-bind 75.1 4.8 0.00016 31.6 5.4 49 119-178 13-64 (102)
69 2dnz_A Probable RNA-binding pr 75.1 5.6 0.00019 30.7 5.8 49 119-178 6-57 (95)
70 3bs9_A Nucleolysin TIA-1 isofo 75.0 5.1 0.00018 30.3 5.4 49 119-178 7-58 (87)
71 2cpf_A RNA binding motif prote 75.0 3.2 0.00011 32.3 4.4 48 120-178 7-60 (98)
72 4fxv_A ELAV-like protein 1; RN 74.8 5.1 0.00017 32.0 5.6 48 120-178 21-71 (99)
73 1uaw_A Mouse-musashi-1; RNP-ty 74.3 4.9 0.00017 29.6 5.1 57 120-188 2-61 (77)
74 2jvr_A Nucleolar protein 3; RN 74.3 4.7 0.00016 33.4 5.4 48 119-177 29-76 (111)
75 3s8s_A Histone-lysine N-methyl 73.9 4.9 0.00017 32.9 5.4 48 120-178 8-58 (110)
76 2cpz_A CUG triplet repeat RNA- 73.6 4.7 0.00016 32.5 5.2 49 119-178 26-77 (115)
77 2dh8_A DAZ-associated protein 73.5 3.9 0.00013 32.3 4.6 58 119-188 17-77 (105)
78 1x5o_A RNA binding motif, sing 72.8 3.2 0.00011 33.4 3.9 50 118-178 25-76 (114)
79 2x1f_A MRNA 3'-END-processing 72.7 7.1 0.00024 30.3 5.8 49 120-179 4-55 (96)
80 2elu_A Zinc finger protein 406 72.4 1.3 4.3E-05 30.2 1.1 29 29-65 3-31 (37)
81 2d9p_A Polyadenylate-binding p 72.2 3.3 0.00011 32.7 3.8 49 119-178 16-65 (103)
82 3mdf_A Peptidyl-prolyl CIS-tra 71.8 5.4 0.00018 30.0 4.8 50 119-179 8-60 (85)
83 3md1_A Nuclear and cytoplasmic 71.5 6.7 0.00023 29.3 5.3 49 119-178 2-53 (83)
84 1x4c_A Splicing factor, argini 71.3 6 0.00021 31.7 5.2 52 119-187 16-68 (108)
85 1oo0_B CG8781-PA, drosophila Y 70.8 7.2 0.00025 31.0 5.6 50 119-179 27-79 (110)
86 3beg_B Splicing factor, argini 70.6 8.7 0.0003 31.3 6.1 52 119-187 17-69 (115)
87 2dgs_A DAZ-associated protein 70.4 7.8 0.00027 30.2 5.6 57 120-188 12-71 (99)
88 2dnm_A SRP46 splicing factor; 70.2 7.2 0.00025 30.6 5.4 57 119-187 14-73 (103)
89 2lkz_A RNA-binding protein 5; 70.2 5 0.00017 32.2 4.5 50 120-180 11-65 (95)
90 3ghg_C Fibrinogen gamma chain; 70.1 51 0.0017 33.9 12.9 99 228-340 25-137 (411)
91 2e5h_A Zinc finger CCHC-type a 70.0 6 0.0002 30.4 4.8 48 120-178 18-68 (94)
92 1m1j_C Fibrinogen gamma chain; 70.0 31 0.0011 35.3 11.3 50 245-294 36-96 (409)
93 1x4h_A RNA-binding protein 28; 69.9 8.6 0.00029 30.5 5.9 50 119-179 16-68 (111)
94 3ucg_A Polyadenylate-binding p 69.8 8.9 0.0003 29.0 5.7 58 120-189 8-68 (89)
95 2rs2_A Musashi-1, RNA-binding 69.7 6.9 0.00023 31.6 5.3 57 119-187 26-85 (109)
96 2div_A TRNA selenocysteine ass 69.7 7.8 0.00027 30.1 5.5 57 119-187 10-70 (99)
97 2cqd_A RNA-binding region cont 69.4 9.1 0.00031 30.8 6.0 48 119-177 18-68 (116)
98 1p27_B RNA-binding protein 8A; 69.3 6.8 0.00023 30.9 5.1 50 119-179 24-76 (106)
99 2dgo_A Cytotoxic granule-assoc 69.3 6.4 0.00022 31.6 5.0 49 119-178 16-67 (115)
100 3na7_A HP0958; flagellar bioge 69.2 76 0.0026 29.8 19.2 20 257-276 21-40 (256)
101 1iqt_A AUF1, heterogeneous nuc 69.1 5.9 0.0002 29.1 4.4 55 121-187 2-59 (75)
102 2hvz_A Splicing factor, argini 68.9 6.8 0.00023 30.7 5.0 56 120-190 2-59 (101)
103 2cqb_A Peptidyl-prolyl CIS-tra 68.8 7.1 0.00024 30.6 5.0 50 119-179 13-65 (102)
104 2jrs_A RNA-binding protein 39; 68.7 6.4 0.00022 31.8 4.9 50 119-179 27-79 (108)
105 3ex7_B RNA-binding protein 8A; 68.6 8.2 0.00028 31.5 5.6 50 119-179 23-75 (126)
106 2nlw_A Eukaryotic translation 68.3 7.8 0.00027 30.9 5.3 63 119-187 16-79 (105)
107 3brv_B NF-kappa-B essential mo 68.3 28 0.00094 27.4 8.0 50 307-356 4-53 (70)
108 2dnl_A Cytoplasmic polyadenyla 68.2 4.8 0.00016 32.7 4.0 48 121-179 11-63 (114)
109 1m1j_A Fibrinogen alpha subuni 68.2 1.2E+02 0.0041 31.7 15.0 79 218-305 38-119 (491)
110 2ki2_A SS-DNA binding protein 68.2 4.9 0.00017 30.8 3.9 49 120-179 3-54 (90)
111 2ghp_A U4/U6 snRNA-associated 67.9 6.9 0.00024 36.4 5.6 57 120-188 43-100 (292)
112 1wf0_A TDP-43, TAR DNA-binding 67.9 5.3 0.00018 30.6 4.0 47 120-179 7-53 (88)
113 2ku7_A MLL1 PHD3-CYP33 RRM chi 67.7 9.7 0.00033 31.3 5.9 49 119-178 64-115 (140)
114 2fc9_A NCL protein; structure 67.6 4.5 0.00015 31.7 3.7 55 119-187 16-71 (101)
115 2jwn_A Embryonic polyadenylate 67.6 8.8 0.0003 31.2 5.6 61 118-190 36-99 (124)
116 2dhg_A TRNA selenocysteine ass 67.3 8.6 0.00029 30.1 5.3 58 119-187 10-69 (104)
117 1p7a_A BF3, BKLF, kruppel-like 67.2 3.1 0.0001 26.0 2.1 26 36-64 7-32 (37)
118 2hzc_A Splicing factor U2AF 65 67.1 7.3 0.00025 29.4 4.7 51 118-178 6-63 (87)
119 1fxl_A Paraneoplastic encephal 67.1 8.7 0.0003 31.9 5.6 48 120-178 4-54 (167)
120 2m2b_A RNA-binding protein 10; 67.1 5.5 0.00019 33.1 4.3 59 120-190 25-88 (131)
121 2wbr_A GW182, gawky, LD47780P; 66.9 6.5 0.00022 32.1 4.5 43 122-178 11-53 (89)
122 3vkg_A Dynein heavy chain, cyt 66.9 2.9E+02 0.0099 35.6 21.5 25 390-414 2054-2078(3245)
123 2dgx_A KIAA0430 protein; RRM d 66.8 7.1 0.00024 30.6 4.7 47 120-178 11-62 (96)
124 3bas_A Myosin heavy chain, str 66.7 49 0.0017 26.6 11.6 28 317-344 58-85 (89)
125 1why_A Hypothetical protein ri 66.5 10 0.00034 29.5 5.5 54 119-187 18-71 (97)
126 2voo_A Lupus LA protein; RNA-b 66.1 7.5 0.00026 35.0 5.3 50 119-179 110-161 (193)
127 3ns6_A Eukaryotic translation 66.0 4.3 0.00015 32.2 3.2 54 120-178 8-64 (100)
128 2m0f_A Zinc finger and BTB dom 65.9 3.1 0.00011 24.0 1.8 23 39-64 1-23 (29)
129 3o0z_A RHO-associated protein 65.8 79 0.0027 28.7 16.9 18 392-409 118-135 (168)
130 3tnu_A Keratin, type I cytoske 65.3 64 0.0022 27.5 11.8 26 400-425 103-128 (131)
131 3s7r_A Heterogeneous nuclear r 65.3 11 0.00038 28.5 5.4 58 119-188 12-72 (87)
132 2g4b_A Splicing factor U2AF 65 65.0 11 0.00038 31.6 5.9 52 118-180 94-148 (172)
133 2cpd_A Apobec-1 stimulating pr 65.0 11 0.00038 29.4 5.5 53 120-187 17-69 (99)
134 2dnq_A RNA-binding protein 4B; 64.7 11 0.00036 28.9 5.2 42 120-177 10-51 (90)
135 1h2v_Z 20 kDa nuclear CAP bind 64.5 8.8 0.0003 32.7 5.2 58 118-187 39-99 (156)
136 1b7f_A Protein (SXL-lethal pro 64.2 9.7 0.00033 31.8 5.3 49 119-178 90-141 (168)
137 3v4m_A Splicing factor U2AF 65 64.0 4.8 0.00017 32.8 3.3 61 119-181 6-72 (105)
138 2dit_A HIV TAT specific factor 63.9 5.4 0.00018 32.3 3.5 59 119-180 16-76 (112)
139 2cq0_A Eukaryotic translation 63.7 5.7 0.00019 31.2 3.6 50 119-179 16-68 (103)
140 1p1t_A Cleavage stimulation fa 63.7 9.1 0.00031 29.9 4.8 48 120-178 10-60 (104)
141 2kxn_B Transformer-2 protein h 63.6 8.4 0.00029 32.3 4.8 56 120-187 48-106 (129)
142 3nmr_A Cugbp ELAV-like family 63.5 9.6 0.00033 31.9 5.2 49 120-179 5-58 (175)
143 2ghp_A U4/U6 snRNA-associated 63.2 8.8 0.0003 35.7 5.3 60 118-187 117-177 (292)
144 1x4e_A RNA binding motif, sing 63.2 9.5 0.00033 28.7 4.6 56 120-187 7-65 (85)
145 1fjc_A Nucleolin RBD2, protein 62.9 4.6 0.00016 31.3 2.8 46 120-178 18-63 (96)
146 2kvh_A Zinc finger and BTB dom 62.7 4.3 0.00015 23.4 2.0 22 39-63 2-23 (27)
147 1x4g_A Nucleolysin TIAR; struc 62.5 10 0.00036 30.1 5.0 46 119-179 26-72 (109)
148 3tyt_A Heterogeneous nuclear r 61.6 13 0.00046 33.5 6.1 65 120-196 125-192 (205)
149 3p5t_L Cleavage and polyadenyl 61.6 14 0.00049 28.3 5.5 55 120-186 3-62 (90)
150 2i2y_A Fusion protein consists 61.6 12 0.0004 31.6 5.4 47 119-179 74-121 (150)
151 2khc_A Testis-specific RNP-typ 61.4 9.3 0.00032 30.8 4.5 50 119-179 41-93 (118)
152 2ytc_A PRE-mRNA-splicing facto 61.4 13 0.00043 27.9 5.0 43 120-177 14-57 (85)
153 3oja_A Leucine-rich immune mol 61.2 97 0.0033 31.2 13.1 23 295-317 323-345 (487)
154 2elt_A Zinc finger protein 406 61.1 4.5 0.00015 24.9 2.0 25 37-64 6-30 (36)
155 1whx_A Hypothetical protein ri 61.1 13 0.00045 30.0 5.4 47 119-179 11-57 (111)
156 2els_A Zinc finger protein 406 60.9 4.8 0.00016 24.9 2.2 25 37-64 6-30 (36)
157 1x4b_A Heterogeneous nuclear r 60.8 12 0.00041 30.0 5.1 58 119-188 28-88 (116)
158 2elr_A Zinc finger protein 406 60.5 4.8 0.00017 24.8 2.1 26 36-64 5-30 (36)
159 2kn4_A Immunoglobulin G-bindin 60.3 12 0.0004 31.7 5.2 57 118-186 70-129 (158)
160 4f02_A Polyadenylate-binding p 60.3 9 0.00031 34.3 4.7 49 120-179 105-154 (213)
161 1qm9_A Polypyrimidine tract-bi 60.2 12 0.00041 32.5 5.3 48 119-178 121-168 (198)
162 2la4_A Nuclear and cytoplasmic 60.1 14 0.00048 28.8 5.3 47 119-179 28-74 (101)
163 2fc8_A NCL protein; structure 60.1 6.7 0.00023 30.7 3.4 54 120-187 17-72 (102)
164 2eqb_B RAB guanine nucleotide 60.1 74 0.0025 26.4 11.5 39 368-412 58-96 (97)
165 2yh0_A Splicing factor U2AF 65 60.1 13 0.00046 31.9 5.6 52 118-180 114-168 (198)
166 1fxl_A Paraneoplastic encephal 60.0 14 0.00047 30.6 5.5 49 119-178 89-140 (167)
167 2cjk_A Nuclear polyadenylated 59.9 17 0.00058 30.3 6.1 57 119-187 88-147 (167)
168 2elp_A Zinc finger protein 406 59.8 5.2 0.00018 24.9 2.2 25 36-63 5-30 (37)
169 2dis_A Unnamed protein product 59.7 15 0.00052 28.9 5.5 48 120-178 10-62 (109)
170 1wf1_A RNA-binding protein RAL 59.5 10 0.00035 30.2 4.4 51 119-186 28-79 (110)
171 2m0d_A Zinc finger and BTB dom 58.8 5.5 0.00019 23.0 2.0 23 39-64 2-24 (30)
172 1nu4_A U1A RNA binding domain; 58.2 5.2 0.00018 31.0 2.3 48 120-178 10-61 (97)
173 1u6f_A Tcubp1, RNA-binding pro 57.9 12 0.00041 31.0 4.7 56 120-187 44-102 (139)
174 1l3k_A Heterogeneous nuclear r 57.9 14 0.00049 31.6 5.4 49 119-178 105-156 (196)
175 2elx_A Zinc finger protein 406 56.9 6 0.00021 24.0 2.1 25 37-64 4-28 (35)
176 2qfj_A FBP-interacting repress 56.9 15 0.00052 32.0 5.5 57 119-187 29-88 (216)
177 3md3_A Nuclear and cytoplasmic 56.8 16 0.00055 30.1 5.4 49 119-178 88-139 (166)
178 2jvo_A Nucleolar protein 3; nu 56.7 13 0.00045 30.0 4.6 44 119-178 32-75 (108)
179 2elq_A Zinc finger protein 406 56.6 5.9 0.0002 24.5 2.0 25 37-64 6-30 (36)
180 1srk_A Zinc finger protein ZFP 56.6 6.2 0.00021 24.1 2.1 26 37-65 4-29 (35)
181 2e44_A Insulin-like growth fac 56.3 18 0.0006 27.8 5.2 55 119-187 16-72 (96)
182 2lea_A Serine/arginine-rich sp 56.2 11 0.00039 31.6 4.3 48 119-177 48-98 (135)
183 1c1g_A Tropomyosin; contractIl 56.1 1E+02 0.0036 26.9 24.8 17 411-427 267-283 (284)
184 1fj7_A Nucleolin RBD1, protein 55.8 4.8 0.00016 31.6 1.8 58 119-188 18-77 (101)
185 2dgt_A RNA-binding protein 30; 55.8 22 0.00076 27.2 5.7 43 119-177 11-53 (92)
186 1b7f_A Protein (SXL-lethal pro 55.7 14 0.00049 30.7 4.9 56 120-187 5-63 (168)
187 2kvf_A Zinc finger and BTB dom 55.5 6.5 0.00022 22.6 2.0 23 39-64 2-24 (28)
188 3pgw_S U1-70K; protein-RNA com 54.9 13 0.00046 37.8 5.4 56 119-186 103-161 (437)
189 1ard_A Yeast transcription fac 54.3 6.9 0.00024 22.5 1.9 22 40-64 2-23 (29)
190 2cpx_A Hypothetical protein FL 54.2 8.8 0.0003 30.7 3.2 47 119-178 26-77 (115)
191 1fje_B Nucleolin RBD12, protei 54.2 12 0.0004 31.7 4.2 48 118-178 99-146 (175)
192 2cpj_A Non-POU domain-containi 54.2 14 0.00049 28.7 4.4 47 119-179 16-62 (99)
193 2elv_A Zinc finger protein 406 53.7 7.5 0.00026 24.0 2.2 25 37-64 6-30 (36)
194 1rik_A E6APC1 peptide; E6-bind 53.3 7.3 0.00025 22.4 1.9 22 40-64 2-23 (29)
195 2kvg_A Zinc finger and BTB dom 52.9 5.2 0.00018 23.2 1.2 22 39-63 2-23 (27)
196 2cqh_A IGF-II mRNA-binding pro 52.7 13 0.00043 28.6 3.8 45 120-179 10-55 (93)
197 1m1j_A Fibrinogen alpha subuni 52.7 1.8E+02 0.0061 30.4 13.1 81 251-336 83-164 (491)
198 2dnp_A RNA-binding protein 14; 52.4 18 0.00062 27.6 4.6 43 120-178 11-53 (90)
199 2en2_A B-cell lymphoma 6 prote 51.6 8.2 0.00028 24.7 2.1 26 35-63 6-31 (42)
200 2m0e_A Zinc finger and BTB dom 51.3 7.7 0.00026 22.1 1.8 21 40-63 2-22 (29)
201 2elo_A Zinc finger protein 406 51.2 6.2 0.00021 24.5 1.4 26 36-64 5-30 (37)
202 2k48_A Nucleoprotein; viral pr 50.9 1.1E+02 0.0038 25.8 9.3 54 347-413 50-103 (107)
203 1klr_A Zinc finger Y-chromosom 50.9 8.2 0.00028 22.1 1.9 22 40-64 2-23 (30)
204 2eos_A B-cell lymphoma 6 prote 50.7 8.8 0.0003 24.6 2.2 27 35-64 6-32 (42)
205 3n9u_C Cleavage and polyadenyl 50.6 22 0.00074 30.9 5.4 57 119-187 56-117 (156)
206 1paa_A Yeast transcription fac 50.3 8.7 0.0003 22.3 2.0 20 40-62 2-21 (30)
207 3q2s_C Cleavage and polyadenyl 50.0 20 0.00068 33.1 5.3 57 119-187 69-130 (229)
208 2adc_A Polypyrimidine tract-bi 49.9 20 0.00069 32.3 5.2 48 119-178 152-199 (229)
209 2elm_A Zinc finger protein 406 49.8 8.3 0.00028 24.3 1.9 23 37-62 6-28 (37)
210 2dgu_A Heterogeneous nuclear r 49.7 19 0.00064 28.3 4.4 44 120-179 13-56 (103)
211 2ept_A Zinc finger protein 32; 49.6 9.3 0.00032 24.4 2.2 27 36-65 6-32 (41)
212 3s6e_A RNA-binding protein 39; 49.4 18 0.00062 30.1 4.4 88 120-224 9-97 (114)
213 2e5g_A U6 snRNA-specific termi 49.2 31 0.0011 26.5 5.6 55 120-188 10-64 (94)
214 2e7s_A RAB guanine nucleotide 49.2 1.2E+02 0.0041 26.6 9.7 41 368-414 78-118 (135)
215 3egn_A RNA-binding protein 40; 49.0 19 0.00067 30.0 4.7 56 120-187 47-110 (143)
216 2pe8_A Splicing factor 45; RRM 49.0 27 0.00092 28.3 5.4 86 119-224 9-98 (105)
217 1l3k_A Heterogeneous nuclear r 49.0 23 0.00077 30.3 5.2 58 119-188 14-74 (196)
218 1wex_A Hypothetical protein (r 48.7 25 0.00086 28.4 5.1 53 119-186 16-68 (104)
219 2epc_A Zinc finger protein 32; 48.7 9.9 0.00034 24.2 2.2 28 34-64 5-32 (42)
220 1njq_A Superman protein; zinc- 48.7 9.3 0.00032 24.1 2.0 26 37-65 3-28 (39)
221 2yu5_A Zinc finger protein 473 48.0 9.4 0.00032 24.7 2.0 29 34-65 6-34 (44)
222 2cpi_A CCR4-NOT transcription 47.8 18 0.0006 29.1 4.0 57 119-187 16-81 (111)
223 2xnq_A Nuclear polyadenylated 47.7 29 0.00098 27.2 5.2 45 120-179 24-68 (97)
224 1jmt_A Splicing factor U2AF 35 47.3 28 0.00097 28.0 5.2 36 144-181 43-81 (104)
225 2ytb_A Zinc finger protein 32; 47.2 9.7 0.00033 24.3 1.9 27 36-65 7-33 (42)
226 3hnw_A Uncharacterized protein 47.1 1.4E+02 0.0049 25.8 10.9 22 388-409 113-134 (138)
227 2el5_A Zinc finger protein 268 46.8 10 0.00035 24.2 2.0 27 36-65 6-32 (42)
228 2yts_A Zinc finger protein 484 46.6 10 0.00036 24.7 2.1 28 35-65 7-34 (46)
229 2emi_A Zinc finger protein 484 46.6 10 0.00036 24.8 2.1 27 35-64 7-33 (46)
230 2emb_A Zinc finger protein 473 46.5 10 0.00036 24.5 2.1 28 34-64 6-33 (44)
231 3pgw_A U1-A; protein-RNA compl 46.4 25 0.00087 32.3 5.4 48 119-179 208-255 (282)
232 2eof_A Zinc finger protein 268 46.2 10 0.00035 24.4 2.0 26 36-64 8-33 (44)
233 2enf_A Zinc finger protein 347 46.2 11 0.00037 24.7 2.1 28 34-64 6-33 (46)
234 2eou_A Zinc finger protein 473 46.2 11 0.00037 24.5 2.1 28 34-64 6-33 (44)
235 2eow_A Zinc finger protein 347 46.1 11 0.00038 24.6 2.1 27 35-64 7-33 (46)
236 1x6e_A Zinc finger protein 24; 45.9 8.4 0.00029 28.0 1.6 27 34-63 8-34 (72)
237 2eq1_A Zinc finger protein 347 45.9 11 0.00037 24.7 2.0 28 35-65 7-34 (46)
238 2yte_A Zinc finger protein 473 45.6 11 0.00039 23.9 2.1 26 36-64 6-31 (42)
239 2ytf_A Zinc finger protein 268 45.6 11 0.00038 24.6 2.1 27 36-65 8-34 (46)
240 2ysp_A Zinc finger protein 224 45.5 8.8 0.0003 25.2 1.5 29 34-65 6-34 (46)
241 2ep3_A Zinc finger protein 484 45.4 11 0.00037 24.7 2.0 26 36-64 8-33 (46)
242 3ghg_B Fibrinogen beta chain; 45.4 1.7E+02 0.0057 30.5 11.7 71 228-308 82-152 (461)
243 2epv_A Zinc finger protein 268 45.3 11 0.00039 24.5 2.1 28 34-64 6-33 (44)
244 2drp_A Protein (tramtrack DNA- 45.2 14 0.00048 26.0 2.7 28 34-64 4-31 (66)
245 1sjq_A Polypyrimidine tract-bi 44.9 26 0.0009 28.9 4.7 45 119-178 17-62 (105)
246 2elz_A Zinc finger protein 224 44.9 13 0.00043 24.4 2.3 28 34-64 6-33 (46)
247 2enh_A Zinc finger protein 28 44.9 13 0.00045 24.4 2.4 29 34-65 6-34 (46)
248 4dci_A Uncharacterized protein 44.8 94 0.0032 27.6 8.5 87 321-426 28-118 (150)
249 2em9_A Zinc finger protein 224 44.8 12 0.0004 24.4 2.1 29 34-65 6-34 (46)
250 2eon_A ZFP-95, zinc finger pro 44.7 11 0.00039 24.8 2.0 28 34-64 6-33 (46)
251 2en3_A ZFP-95, zinc finger pro 44.6 12 0.00041 24.4 2.2 25 36-63 8-32 (46)
252 2ytp_A Zinc finger protein 484 44.5 12 0.00042 24.5 2.2 28 34-64 6-33 (46)
253 3smz_A Protein raver-1, ribonu 44.5 23 0.0008 32.6 4.8 51 118-179 184-237 (284)
254 2en9_A Zinc finger protein 28 44.5 12 0.00042 24.5 2.2 28 34-64 6-33 (46)
255 2em8_A Zinc finger protein 224 44.4 13 0.00044 24.4 2.3 28 34-64 6-33 (46)
256 2em3_A Zinc finger protein 28 44.4 11 0.00039 24.6 2.0 27 35-64 7-33 (46)
257 2cjk_A Nuclear polyadenylated 44.1 32 0.0011 28.6 5.2 49 120-179 5-56 (167)
258 2ely_A Zinc finger protein 224 44.1 13 0.00045 24.4 2.3 28 34-64 6-33 (46)
259 3nmd_A CGMP dependent protein 44.0 37 0.0013 26.8 5.1 39 381-425 25-63 (72)
260 1wg1_A KIAA1579 protein, homol 43.9 17 0.0006 27.7 3.3 52 120-187 7-58 (88)
261 2yrj_A Zinc finger protein 473 43.7 13 0.00044 24.3 2.2 28 34-64 6-33 (46)
262 1znf_A 31ST zinc finger from X 43.7 12 0.00042 21.1 1.8 22 40-64 1-22 (27)
263 2yto_A Zinc finger protein 484 43.7 13 0.00044 24.4 2.2 27 35-64 7-33 (46)
264 2epw_A Zinc finger protein 268 43.6 13 0.00044 24.2 2.2 28 35-65 7-34 (46)
265 2lcw_A RNA-binding protein FUS 49.5 4.9 0.00017 32.5 0.0 50 120-180 9-69 (116)
266 3lay_A Zinc resistance-associa 43.5 1.4E+02 0.0049 26.9 9.8 22 338-359 119-140 (175)
267 2en7_A Zinc finger protein 268 43.4 11 0.00039 24.2 1.9 26 36-64 8-33 (44)
268 3uk3_C Zinc finger protein 217 43.2 11 0.00037 25.7 1.8 23 38-63 2-24 (57)
269 2eme_A Zinc finger protein 473 43.1 13 0.00043 24.3 2.1 27 36-65 8-34 (46)
270 2eom_A ZFP-95, zinc finger pro 43.0 13 0.00043 24.5 2.1 28 34-64 6-33 (46)
271 2em2_A Zinc finger protein 28 42.9 13 0.00044 24.4 2.1 28 34-64 6-33 (46)
272 2ytj_A Zinc finger protein 484 42.9 12 0.00042 24.4 2.0 26 36-64 8-33 (46)
273 2em4_A Zinc finger protein 28 42.5 13 0.00044 24.4 2.0 28 34-64 6-33 (46)
274 2yth_A Zinc finger protein 224 42.5 13 0.00046 24.3 2.1 27 35-64 7-33 (46)
275 2eop_A Zinc finger protein 268 42.5 13 0.00045 24.2 2.1 27 35-64 7-33 (46)
276 2em6_A Zinc finger protein 224 42.4 14 0.00047 24.2 2.2 28 34-64 6-33 (46)
277 3na7_A HP0958; flagellar bioge 42.2 2.2E+02 0.0074 26.6 16.1 37 310-346 110-146 (256)
278 2v66_B Nuclear distribution pr 42.2 1.6E+02 0.0054 24.9 14.7 24 396-419 88-111 (111)
279 2emg_A Zinc finger protein 484 42.1 15 0.00051 24.0 2.3 28 34-64 6-33 (46)
280 2eov_A Zinc finger protein 484 42.1 13 0.00045 24.2 2.0 26 36-64 8-33 (46)
281 2eoy_A Zinc finger protein 473 42.1 14 0.00048 24.2 2.2 29 34-65 6-34 (46)
282 2eoz_A Zinc finger protein 473 42.1 9.8 0.00033 25.0 1.4 26 35-63 7-32 (46)
283 2ad9_A Polypyrimidine tract-bi 42.0 33 0.0011 28.8 5.0 46 119-179 32-78 (119)
284 2eoh_A Zinc finger protein 28 42.0 13 0.00045 24.4 2.0 28 34-64 6-33 (46)
285 2eq2_A Zinc finger protein 347 41.8 12 0.00041 24.5 1.8 26 36-64 8-33 (46)
286 2qfj_A FBP-interacting repress 41.8 37 0.0013 29.5 5.5 48 119-177 126-176 (216)
287 2yti_A Zinc finger protein 347 41.6 11 0.00039 24.6 1.6 27 35-64 7-33 (46)
288 2epx_A Zinc finger protein 28 41.2 15 0.0005 24.0 2.2 28 34-64 6-33 (47)
289 4gzn_C ZFP-57, zinc finger pro 41.2 14 0.00047 27.2 2.2 24 37-63 1-24 (60)
290 2yu8_A Zinc finger protein 347 41.2 15 0.00051 24.0 2.2 27 34-63 6-32 (46)
291 2enc_A Zinc finger protein 224 41.1 14 0.00049 24.1 2.1 28 34-64 6-33 (46)
292 2emy_A Zinc finger protein 268 41.0 15 0.0005 24.0 2.1 28 34-64 6-33 (46)
293 2em5_A ZFP-95, zinc finger pro 40.9 14 0.00048 24.2 2.0 27 35-64 7-33 (46)
294 2cq1_A PTB-like protein L; RRM 40.8 27 0.00091 28.2 4.1 45 119-178 16-61 (101)
295 2eor_A Zinc finger protein 224 40.7 14 0.00048 24.0 2.0 26 35-63 7-32 (46)
296 2eoj_A Zinc finger protein 268 40.7 10 0.00035 24.5 1.3 27 36-65 8-34 (44)
297 2emj_A Zinc finger protein 28 40.7 14 0.00049 24.2 2.0 28 34-64 6-33 (46)
298 2go8_A Hypothetical protein YQ 40.7 38 0.0013 28.9 5.2 100 118-222 11-115 (122)
299 1wii_A Hypothetical UPF0222 pr 40.6 7.7 0.00026 31.5 0.7 14 36-49 19-32 (85)
300 2ytn_A Zinc finger protein 347 40.6 14 0.00049 24.1 2.0 29 34-65 6-34 (46)
301 2kvi_A Nuclear polyadenylated 40.6 38 0.0013 26.2 4.8 43 120-177 12-54 (96)
302 2eox_A Zinc finger protein 473 40.6 11 0.00038 24.4 1.4 28 34-64 6-33 (44)
303 3a2a_A Voltage-gated hydrogen 40.6 40 0.0014 25.4 4.5 40 379-425 9-48 (58)
304 2eq3_A Zinc finger protein 347 40.5 10 0.00036 24.7 1.3 27 36-65 8-34 (46)
305 2ep2_A Zinc finger protein 484 40.5 14 0.00049 24.1 2.0 27 35-64 7-33 (46)
306 2ep1_A Zinc finger protein 484 40.4 14 0.00047 24.1 1.9 27 35-64 7-33 (46)
307 2lvr_A Zinc finger and BTB dom 46.5 5.9 0.0002 23.0 0.0 22 39-63 2-23 (30)
308 2em7_A Zinc finger protein 224 40.4 14 0.00048 24.1 1.9 28 35-65 7-34 (46)
309 1d0q_A DNA primase; zinc-bindi 40.3 31 0.0011 28.1 4.4 31 32-66 50-80 (103)
310 2emz_A ZFP-95, zinc finger pro 40.1 14 0.00049 24.1 2.0 25 36-63 8-32 (46)
311 2el4_A Zinc finger protein 268 40.1 15 0.0005 23.9 2.0 27 36-65 8-34 (46)
312 2eoo_A ZFP-95, zinc finger pro 40.0 15 0.00052 24.0 2.1 26 36-64 8-33 (46)
313 2yso_A ZFP-95, zinc finger pro 40.0 15 0.00052 24.0 2.1 28 34-64 6-33 (46)
314 2eq0_A Zinc finger protein 347 40.0 16 0.00054 23.9 2.2 26 36-64 8-33 (46)
315 2ene_A Zinc finger protein 347 39.9 15 0.00051 24.0 2.0 27 36-65 8-34 (46)
316 2emh_A Zinc finger protein 484 39.9 15 0.0005 24.0 2.0 26 35-63 7-32 (46)
317 2yrm_A B-cell lymphoma 6 prote 39.8 16 0.00054 23.7 2.1 26 36-64 6-31 (43)
318 2eoq_A Zinc finger protein 224 39.8 14 0.00049 24.1 1.9 26 36-64 8-33 (46)
319 3iuf_A Zinc finger protein UBI 39.6 14 0.00048 25.0 1.9 25 37-64 4-28 (48)
320 2epu_A Zinc finger protein 32; 39.6 13 0.00044 24.2 1.7 28 35-65 7-34 (45)
321 2eml_A Zinc finger protein 28 39.6 15 0.00051 24.0 2.0 27 35-64 7-33 (46)
322 6rxn_A Rubredoxin; electron tr 39.5 8.5 0.00029 27.8 0.7 13 39-51 29-41 (46)
323 2emx_A Zinc finger protein 268 39.1 16 0.00054 23.6 2.0 26 36-64 6-31 (44)
324 1rim_A E6APC2 peptide; E6-bind 39.0 16 0.00053 22.4 1.9 22 40-64 2-23 (33)
325 2emf_A Zinc finger protein 484 38.8 16 0.00054 23.9 2.0 28 35-65 7-34 (46)
326 2epz_A Zinc finger protein 28 38.6 17 0.00059 23.6 2.2 28 34-64 6-33 (46)
327 2ytk_A Zinc finger protein 347 38.5 16 0.00053 23.9 1.9 27 35-64 7-33 (46)
328 1e8j_A Rubredoxin; iron-sulfur 38.4 11 0.00037 27.8 1.1 14 39-52 35-48 (52)
329 2emk_A Zinc finger protein 28 38.3 16 0.00054 23.9 1.9 26 36-64 8-33 (46)
330 2em0_A Zinc finger protein 224 38.3 17 0.00059 23.7 2.1 28 34-64 6-33 (46)
331 2ytm_A Zinc finger protein 28 38.2 14 0.00049 24.2 1.7 27 34-63 6-32 (46)
332 2ep0_A Zinc finger protein 28 38.1 17 0.00058 23.7 2.1 28 35-65 7-34 (46)
333 2ytq_A Zinc finger protein 268 37.9 17 0.00057 23.8 2.0 29 34-65 6-34 (46)
334 3mq9_A Bone marrow stromal ant 37.8 3.2E+02 0.011 27.2 16.1 52 371-422 413-470 (471)
335 2ytg_A ZFP-95, zinc finger pro 37.8 16 0.00054 23.8 1.9 28 35-65 7-34 (46)
336 2en8_A Zinc finger protein 224 37.8 17 0.00059 23.6 2.1 28 35-65 7-34 (46)
337 2emm_A ZFP-95, zinc finger pro 37.7 17 0.00057 23.6 2.0 27 35-64 7-33 (46)
338 1bbo_A Human enhancer-binding 37.6 17 0.00056 24.7 2.0 26 37-65 26-51 (57)
339 3pq1_A Poly(A) RNA polymerase; 37.4 26 0.00089 36.5 4.3 37 139-179 64-100 (464)
340 3mjh_B Early endosome antigen 37.4 16 0.00055 24.8 1.8 20 40-62 5-24 (34)
341 1yui_A GAGA-factor; complex (D 37.4 17 0.00059 24.8 2.1 26 36-64 20-45 (54)
342 2lvu_A Zinc finger and BTB dom 43.5 7.1 0.00024 22.2 0.0 20 40-62 2-21 (26)
343 2eq4_A Zinc finger protein 224 37.1 16 0.00054 23.8 1.8 27 35-64 7-33 (46)
344 2j8a_A Histone-lysine N-methyl 36.8 83 0.0029 27.6 6.8 37 139-177 18-57 (136)
345 2el6_A Zinc finger protein 268 36.4 18 0.00062 23.6 2.0 28 35-65 7-34 (46)
346 2fxo_A Myosin heavy chain, car 36.3 2E+02 0.0067 24.3 15.6 30 315-344 62-91 (129)
347 2adr_A ADR1; transcription reg 36.3 18 0.0006 24.9 2.0 24 37-63 27-50 (60)
348 2v3b_B Rubredoxin 2, rubredoxi 36.2 10 0.00035 28.2 0.7 15 39-53 35-49 (55)
349 2a3j_A U1 small nuclear ribonu 36.1 52 0.0018 27.6 5.3 48 120-178 31-82 (127)
350 2lvt_A Zinc finger and BTB dom 42.3 7.6 0.00026 22.5 0.0 21 40-63 2-22 (29)
351 2emp_A Zinc finger protein 347 36.0 18 0.00062 23.5 2.0 25 36-63 8-32 (46)
352 1yk4_A Rubredoxin, RD; electro 36.0 10 0.00035 27.9 0.7 15 38-52 33-47 (52)
353 2ema_A Zinc finger protein 347 35.9 20 0.00067 23.4 2.1 26 36-64 8-33 (46)
354 2ytt_A Zinc finger protein 473 35.8 16 0.00054 23.9 1.6 25 36-63 8-32 (46)
355 3r27_A HnRNP L, heterogeneous 35.6 55 0.0019 26.7 5.2 44 120-178 23-67 (100)
356 4rxn_A Rubredoxin; electron tr 35.1 11 0.00037 28.1 0.7 14 39-52 35-48 (54)
357 2kn9_A Rubredoxin; metalloprot 35.0 11 0.00037 30.5 0.7 15 39-53 59-73 (81)
358 2bz2_A Negative elongation fac 34.6 57 0.002 26.8 5.3 34 140-178 50-83 (121)
359 3pgw_A U1-A; protein-RNA compl 34.1 55 0.0019 30.0 5.6 55 120-186 11-69 (282)
360 2ytd_A Zinc finger protein 473 34.0 22 0.00074 23.1 2.1 27 35-64 7-33 (46)
361 1m1j_B Fibrinogen beta chain; 33.9 3.3E+02 0.011 28.3 11.8 64 242-309 95-158 (464)
362 2ic6_A Nucleocapsid protein; h 33.8 1.8E+02 0.0062 23.2 8.3 53 348-413 21-73 (78)
363 2ytr_A Zinc finger protein 347 33.6 19 0.00067 23.3 1.8 28 34-64 6-33 (46)
364 1fv5_A First zinc finger of U- 33.5 18 0.00062 24.0 1.6 24 37-63 5-28 (36)
365 1f2i_G Fusion of N-terminal 17 33.4 21 0.00073 25.6 2.1 10 38-47 47-56 (73)
366 2en6_A Zinc finger protein 268 33.3 19 0.00065 23.4 1.7 28 34-64 6-33 (46)
367 2eln_A Zinc finger protein 406 33.2 23 0.00079 23.6 2.1 24 37-63 6-31 (38)
368 2eoe_A Zinc finger protein 347 33.1 16 0.00055 23.7 1.3 28 34-64 6-33 (46)
369 4f9d_A Poly-beta-1,6-N-acetyl- 32.3 12 0.00042 40.2 0.9 68 141-218 299-366 (618)
370 2en1_A Zinc finger protein 224 32.0 18 0.00063 23.5 1.4 28 35-65 7-34 (46)
371 2yrc_A Protein transport prote 32.0 18 0.00063 27.2 1.6 17 33-49 26-42 (59)
372 1sjr_A Polypyrimidine tract-bi 31.7 54 0.0018 29.3 4.9 48 121-180 49-96 (164)
373 3ue2_A Poly(U)-binding-splicin 31.6 35 0.0012 28.4 3.4 86 119-225 21-114 (118)
374 2ct1_A Transcriptional repress 31.6 22 0.00075 25.9 2.0 27 34-63 9-35 (77)
375 1dx8_A Rubredoxin; electron tr 31.5 13 0.00045 29.0 0.7 15 39-53 39-53 (70)
376 2eps_A POZ-, at HOOK-, and zin 31.4 25 0.00085 24.1 2.1 24 37-63 9-32 (54)
377 2d9o_A DNAJ (HSP40) homolog, s 30.9 51 0.0018 26.6 4.3 38 138-179 28-65 (100)
378 2g4b_A Splicing factor U2AF 65 30.7 52 0.0018 27.3 4.5 59 120-189 6-71 (172)
379 2lx9_A Ferrous iron transport 30.6 79 0.0027 24.7 5.2 40 141-182 19-60 (83)
380 2ic9_A Nucleocapsid protein; h 30.0 1.8E+02 0.006 24.1 7.2 53 348-413 21-73 (96)
381 1x5p_A Negative elongation fac 29.9 70 0.0024 24.5 4.8 34 140-178 26-59 (97)
382 3smz_A Protein raver-1, ribonu 29.9 39 0.0013 31.1 3.8 51 120-186 24-74 (284)
383 1x5w_A Zinc finger protein 64, 29.8 25 0.00087 25.0 2.0 26 37-65 6-31 (70)
384 2kw0_A CCMH protein; oxidoredu 29.3 17 0.00057 29.9 1.0 13 39-51 22-34 (90)
385 1vq8_Z 50S ribosomal protein L 29.3 17 0.00059 29.2 1.1 11 38-48 25-35 (83)
386 2epq_A POZ-, at HOOK-, and zin 29.2 18 0.00061 23.5 1.0 27 35-64 5-31 (45)
387 2hl7_A Cytochrome C-type bioge 29.0 18 0.00061 29.3 1.1 13 39-51 25-37 (84)
388 2lv2_A Insulinoma-associated p 28.9 25 0.00086 27.6 2.0 26 36-64 52-77 (85)
389 3mhx_A Putative ferrous iron t 28.9 82 0.0028 24.4 5.0 39 140-178 23-62 (85)
390 3e1r_A Centrosomal protein of 28.8 56 0.0019 24.7 3.7 30 383-412 23-54 (58)
391 2d9h_A Zinc finger protein 692 28.7 29 0.00098 25.3 2.2 23 37-62 4-26 (78)
392 2epr_A POZ-, at HOOK-, and zin 28.7 22 0.00077 23.5 1.4 26 37-65 9-34 (48)
393 1zfd_A SWI5; DNA binding motif 28.7 34 0.0012 20.1 2.2 24 39-65 2-27 (32)
394 1s24_A Rubredoxin 2; electron 28.6 16 0.00054 29.8 0.7 15 39-53 67-81 (87)
395 4emc_A Monopolin complex subun 28.4 1.8E+02 0.0062 26.8 7.8 35 238-272 4-38 (190)
396 2lce_A B-cell lymphoma 6 prote 28.3 28 0.00096 25.1 2.0 26 36-64 13-38 (74)
397 2cq2_A Hypothetical protein LO 28.3 66 0.0023 26.8 4.6 37 138-179 38-74 (114)
398 3u06_A Protein claret segregat 28.1 1.4E+02 0.0048 30.3 7.8 22 407-428 43-64 (412)
399 2dmd_A Zinc finger protein 64, 28.0 26 0.00088 26.3 1.8 26 37-65 5-30 (96)
400 2yt9_A Zinc finger-containing 27.8 31 0.0011 25.8 2.3 26 37-65 4-29 (95)
401 2e72_A POGO transposable eleme 27.6 32 0.0011 25.2 2.1 21 38-62 10-31 (49)
402 1fje_B Nucleolin RBD12, protei 26.8 24 0.00081 29.8 1.6 61 119-191 14-76 (175)
403 4f02_A Polyadenylate-binding p 26.8 89 0.0031 27.6 5.5 49 120-179 17-68 (213)
404 2kmk_A Zinc finger protein GFI 26.8 32 0.0011 24.8 2.1 10 38-47 55-64 (82)
405 1a1h_A QGSR zinc finger peptid 26.3 33 0.0011 25.3 2.2 23 38-63 60-82 (90)
406 1va1_A Transcription factor SP 26.2 37 0.0013 21.0 2.1 24 37-63 5-30 (37)
407 2jvx_A NF-kappa-B essential mo 25.9 33 0.0011 22.3 1.7 20 40-62 3-22 (28)
408 2lv2_A Insulinoma-associated p 25.8 31 0.0011 27.0 2.0 31 32-65 20-50 (85)
409 2cot_A Zinc finger protein 435 25.8 33 0.0011 24.9 2.0 23 38-63 44-66 (77)
410 4avr_A PA4485; unknown functio 25.8 25 0.00087 29.0 1.5 20 27-49 47-67 (95)
411 1m1j_B Fibrinogen beta chain; 24.7 6E+02 0.021 26.3 15.5 50 237-286 101-153 (464)
412 2z5i_I TM, tropomyosin alpha-1 24.6 75 0.0026 22.3 3.5 24 391-414 16-39 (40)
413 3j21_i 50S ribosomal protein L 24.5 23 0.00078 28.7 0.9 12 38-49 33-44 (83)
414 2e5i_A Heterogeneous nuclear r 24.3 89 0.003 26.3 4.7 45 121-179 28-73 (124)
415 2wbs_A Krueppel-like factor 4; 24.2 37 0.0013 24.9 2.1 24 37-63 62-85 (89)
416 2k5l_A FEOA; structure, NESG, 23.8 88 0.003 24.1 4.3 38 141-179 21-59 (81)
417 3sde_A Paraspeckle component 1 23.8 71 0.0024 29.3 4.4 54 119-187 23-76 (261)
418 3u50_C Telomerase-associated p 23.7 25 0.00087 31.8 1.2 17 33-49 51-68 (172)
419 1wjp_A Zinc finger protein 295 23.6 42 0.0014 25.9 2.4 29 32-63 8-36 (107)
420 1sp2_A SP1F2; zinc finger, tra 23.3 45 0.0015 19.4 2.0 23 40-65 2-26 (31)
421 1ncs_A Peptide M30F, transcrip 23.3 46 0.0016 22.0 2.2 27 34-63 12-40 (47)
422 3jyw_9 60S ribosomal protein L 23.3 26 0.00087 27.7 1.0 12 38-49 24-35 (72)
423 1lko_A Rubrerythrin all-iron(I 23.3 39 0.0013 30.6 2.4 29 19-47 134-162 (191)
424 1x6h_A Transcriptional repress 23.0 41 0.0014 24.5 2.1 28 34-64 9-36 (86)
425 1bhi_A CRE-BP1, ATF-2; CRE bin 22.5 45 0.0015 20.4 1.9 24 37-63 3-28 (38)
426 3k29_A Putative uncharacterize 22.5 4.3E+02 0.015 23.9 15.9 66 305-373 13-78 (169)
427 2yh0_A Splicing factor U2AF 65 22.4 91 0.0031 26.5 4.5 60 120-190 6-72 (198)
428 2csh_A Zinc finger protein 297 22.3 42 0.0014 25.9 2.1 22 38-62 63-84 (110)
429 3iz5_m 60S ribosomal protein L 22.3 26 0.0009 28.9 0.9 12 38-49 34-45 (92)
430 3zzy_A Polypyrimidine tract-bi 22.2 99 0.0034 26.4 4.6 45 121-178 31-76 (130)
431 1wvl_A DNA-binding proteins 7A 22.2 84 0.0029 24.5 3.7 32 377-408 48-79 (80)
432 3gj5_B Nuclear pore complex pr 22.1 43 0.0015 22.6 1.8 22 27-48 3-29 (34)
433 3ol1_A Vimentin; structural ge 21.9 3.5E+02 0.012 22.6 9.2 81 349-429 19-103 (119)
434 3hhm_B NISH2 P85alpha; PI3KCA, 21.8 6E+02 0.021 25.3 15.3 54 314-373 201-254 (373)
435 2ebt_A Krueppel-like factor 5; 21.7 44 0.0015 25.1 2.1 9 39-47 74-82 (100)
436 1jei_A Emerin; membrane protei 21.6 46 0.0016 24.8 2.0 25 136-160 3-27 (53)
437 1llm_C Chimera of ZIF23-GCN4; 21.5 46 0.0016 24.8 2.2 26 37-65 28-53 (88)
438 1deq_A Fibrinogen (alpha chain 21.2 6.6E+02 0.023 25.5 13.5 77 251-332 85-162 (390)
439 1qm9_A Polypyrimidine tract-bi 21.0 1.1E+02 0.0039 26.1 4.9 54 120-187 5-59 (198)
440 3a43_A HYPD, hydrogenase nicke 21.0 76 0.0026 27.4 3.7 31 18-48 42-78 (139)
441 3izc_m 60S ribosomal protein R 20.9 28 0.00097 28.7 0.8 11 39-49 35-45 (92)
442 2eod_A TNF receptor-associated 20.8 47 0.0016 23.5 2.0 25 37-65 7-31 (66)
443 4ayb_P DNA-directed RNA polyme 20.8 26 0.0009 25.6 0.5 8 40-47 23-30 (48)
444 1t6f_A Geminin; coiled-coil, c 20.8 1.8E+02 0.0063 19.9 4.7 20 316-335 5-24 (37)
445 4a17_Y RPL37A, 60S ribosomal p 20.7 31 0.0011 29.0 1.1 11 38-48 34-44 (103)
446 2kdx_A HYPA, hydrogenase/ureas 20.7 80 0.0027 26.2 3.6 31 18-48 44-81 (119)
447 2k4y_A FEOA-like protein; GFT 20.6 99 0.0034 24.1 4.0 36 141-178 24-61 (86)
448 3c3g_A Alpha/beta peptide with 20.5 66 0.0023 21.7 2.4 22 404-425 9-30 (33)
449 2v71_A Nuclear distribution pr 20.3 5E+02 0.017 23.8 17.5 26 255-280 43-68 (189)
450 1deb_A APC protein, adenomatou 20.1 2E+02 0.0069 21.2 5.1 35 315-349 7-41 (54)
451 2i1j_A Moesin; FERM, coiled-co 20.1 1.4E+02 0.0049 31.5 6.3 124 282-413 331-454 (575)
452 1uix_A RHO-associated kinase; 20.1 1.7E+02 0.0057 23.0 5.0 22 391-412 10-31 (71)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=7.6e-68 Score=485.74 Aligned_cols=168 Identities=60% Similarity=1.037 Sum_probs=162.9
Q ss_pred CCCeeeccceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHh
Q 047081 111 SDGKFVWPWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 111 ~de~~VWPwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
++++|||||||||+||||++++||+++|+|+++|+++|+..||+|++|+|+||++||+|+|||+|++||+||+||++||+
T Consensus 5 ~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 5 HDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp -CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHH
Confidence 89999999999999999978899999999999999999777799999999999999999999999999999999999999
Q ss_pred hhhhccCChhhhhccCCCCCcceeeecccCCCCCCcchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047081 191 SFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHL 270 (432)
Q Consensus 191 ~Fe~~~~Gr~dW~~~~~~~~~LYGw~AradD~~~~~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l 270 (432)
||+.+||||+||.++++.+++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||++|
T Consensus 85 ~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn~~l 164 (172)
T 4e8u_A 85 AYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDM 164 (172)
T ss_dssp HHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 047081 271 EEMKERCI 278 (432)
Q Consensus 271 ~~lE~k~~ 278 (432)
++||++||
T Consensus 165 ~ele~k~~ 172 (172)
T 4e8u_A 165 KEIEELCS 172 (172)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhC
Confidence 99999997
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.89 E-value=1.1 Score=41.61 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 047081 256 VSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELE 335 (432)
Q Consensus 256 v~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~ 335 (432)
|+|.+.........+.+|+.-|++--.|=+-+-.|-++-+.+...-++.++. ...+.-.+.+.++..++....+..
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~----~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA----DNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777887788888888888887775444443333333333333332222222 222333344444444433333322
Q ss_pred HhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhH
Q 047081 336 FLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALE 415 (432)
Q Consensus 336 ~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LE 415 (432)
.-...|.+--+..-..+..|...+..-...|+.|.=+ .-.+.-.+++-..-=..++-++.-||-+|+.|+.|.
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~-------~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~ 160 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA-------KRATIMSLEDFEQRLNQAIERNAFLESELDEKESLL 160 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111121111111122222222222222222222221 112233334444444567888889999999999999
Q ss_pred HHHHhhhccccc
Q 047081 416 LEIERLRGTSKC 427 (432)
Q Consensus 416 LEi~qLkG~L~V 427 (432)
.+||+|+--+.=
T Consensus 161 ~~~QRLkdE~rD 172 (189)
T 2v71_A 161 VSVQRLKDEARD 172 (189)
T ss_dssp CCC---------
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.90 E-value=1.9 Score=45.59 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 242 SGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEE---KDRLVQGYNEEIKKIQLSAQYHFQRIFT 318 (432)
Q Consensus 242 ~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~mee---k~~l~~~~neEi~kmq~~a~~~~~~I~~ 318 (432)
..+..+..+.-.+.|+.|+++++.-++.-++.+.-|+.+...|+.-+.+ ++....+|.+|++..++.-.+-++..+.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777788888888888777777777777777777555544 3444455555777766666666666665
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 047081 319 EHENFKLQLEAQKKELEF 336 (432)
Q Consensus 319 e~ekl~~eLe~k~~eL~~ 336 (432)
-...|+.-|+++..++..
T Consensus 132 nIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.74 E-value=3.6 Score=42.71 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047081 391 KIEKEELHNKIIQLEKQL 408 (432)
Q Consensus 391 kreKe~~~~kil~LEkqL 408 (432)
++|...+-.+|.+|++.+
T Consensus 564 ~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 564 RQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.68 E-value=2.1 Score=44.51 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 300 EEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 300 eEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
+.+.+..+...+..+.+..+.+.++.+.+.++.+++.=.++.+.++...+..++++.+-++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 44444444444555555566666666666666666655555555555555555555544444
No 6
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.36 E-value=0.14 Score=41.71 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=45.9
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
+.++.|-|+|. ..+..+|++.|+. |.++.|+.++++.| +.|++.|.|.+. ..-..|+.+
T Consensus 15 ~~~l~V~nLp~---------~~te~~l~~~F~~--~G~~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~ 74 (102)
T 1wez_A 15 GHCVHMRGLPY---------RATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATH-EDAVAAMAK 74 (102)
T ss_dssp SCEEEEESCCT---------TCCHHHHHHSSCS--CCCSEEEEEESSSSCEEEEEEEECSSS-HHHHHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCceEEEEEECCCCCEeeEEEEEECCH-HHHHHHHHh
Confidence 35677899997 2367889999999 77889999998877 689999999854 445556654
No 7
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.97 E-value=0.33 Score=37.79 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=44.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
.++.|-|+|. ..+...|++.|+. |.+..++..++..| ++|+|.|.|.+ -..-..|+.+
T Consensus 11 ~~l~v~nLp~---------~~t~~~l~~~F~~--~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~ 69 (91)
T 2dgw_A 11 HTVKLRGAPF---------NVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALKC 69 (91)
T ss_dssp CEEEEECCCS---------SCCHHHHHHHHTT--SCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHHS
T ss_pred cEEEEECCCC---------CCCHHHHHHHHhh--CCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHHh
Confidence 4577889986 3367889999999 87788888888666 68999999974 4455566653
No 8
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=90.63 E-value=0.31 Score=39.53 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=44.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC----cceeeecCCCC-CceeEEEEeCCCccchHHHHhhHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP----TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p----~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
.++.|-|+|. ..+...|++.|+. |.+ ..|+.++++.| ++|++.|.|.+ ...-..|+.++.
T Consensus 12 ~~l~V~nLp~---------~~te~~l~~~F~~--~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~~ 76 (107)
T 2lmi_A 12 FLIRAQGLPW---------SCTMEDVLNFFSD--CRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEKHR 76 (107)
T ss_dssp CEEEEECCCS---------SCCSHHHHHHTTT--SCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTTTT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHhCc
Confidence 4567889986 2367889999998 655 67888887777 78999999975 555666776533
No 9
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.97 E-value=0.33 Score=40.38 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=45.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHhhH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAFE 189 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~fe 189 (432)
+.+.|-|+|. -.+...|++.|+. |.+..|+.++++.| .+|++.|.|... .....|+.++
T Consensus 17 ~~v~V~nLp~---------~~te~dl~~~F~~--~~v~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~ 76 (109)
T 2dnn_A 17 LYVSVHGMPF---------SAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSP-QDTFEALKRN 76 (109)
T ss_dssp HEEEEECCCS---------SCCHHHHHHHTTT--SCCCEEEECCCTTCCCCSEEEEECSSH-HHHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHhcc--CCeeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcC
Confidence 5788999986 2367889999998 88889999988877 689999999874 3344555443
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.75 E-value=9 Score=32.88 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 312 HFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 312 ~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
.++.++.--.+.+.+|+.++.++..|-.+.......-...+++++.+...
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667788888888888888888888777777778888776644
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.24 E-value=0.66 Score=36.88 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=38.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~ 178 (432)
-++.|-|+|. ..+...|++.|+. |.++ .|....+..++.|++.|.|...
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPF---------RFRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHGGG--TSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 3466889986 3467889999999 8764 6777777778999999999874
No 12
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.71 E-value=0.53 Score=40.06 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=43.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-----cceeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-----TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-----~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
..+.|-|+|. -.+...|++.|+. |.+ ..|+.+++..| .+|++.|.|...- .-..|+..
T Consensus 24 ~~v~V~nLp~---------~~te~dl~~~F~~--~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al~~ 87 (123)
T 2dha_A 24 VIVRMRGLPF---------TATAEEVVAFFGQ--HCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNALRK 87 (123)
T ss_dssp CEEEECSCCT---------TCCHHHHHHHHHT--TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--hCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 5678899986 2367889999999 886 46888888777 6899999998643 34455543
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.67 E-value=28 Score=44.39 Aligned_cols=30 Identities=10% Similarity=0.288 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHh----HHhhhHHHHHhhhcccc
Q 047081 397 LHNKIIQLEKQLD----AKQALELEIERLRGTSK 426 (432)
Q Consensus 397 ~~~kil~LEkqLd----~kQ~LELEi~qLkG~L~ 426 (432)
+.++|.+|+.+++ +||.|+.|++..+.+|+
T Consensus 2040 le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2040 LEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554443 46667777666665553
No 14
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=88.02 E-value=0.52 Score=40.41 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=44.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc--ceeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT--RVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~--kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
.++.|-|+|. -.+...|++.|+. |.+. .|+.++++.| .+|++.|.|.+.- ....|+..
T Consensus 43 ~~lfVgnLp~---------~~te~dL~~~F~~--~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e-~A~~Al~~ 103 (126)
T 2hgm_A 43 GFVRLRGLPF---------GCTKEEIVQFFSG--LEIVPNGITLPVDPEGKITGEAFVQFASQE-LAEKALGK 103 (126)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHTTT--SCEEEEEEECCCCSSSSSCSEEEEEESSTT-HHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhc--CCceeeEEEEEECCCCCCceEEEEEECCHH-HHHHHHHH
Confidence 3467899997 2367889999999 8666 7888888877 7899999998654 34555553
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.20 E-value=5 Score=45.94 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH
Q 047081 270 LEEMKERCIETSNFIENLMEEKDRL 294 (432)
Q Consensus 270 l~~lE~k~~~~s~sL~~~meek~~l 294 (432)
..+||.+..+...+|....+++..|
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L 947 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSL 947 (1080)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655544444433
No 16
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=87.14 E-value=0.42 Score=41.60 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=43.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
.++.|-|+|. -.+..+|++.|+. |.+..|+.++++.| .+|++.|.|... ..-..|+
T Consensus 47 ~~lfV~nLp~---------~~te~dL~~~F~~--~Gi~~v~i~~d~~g~srGfaFV~F~~~-e~A~~Al 103 (139)
T 2hgn_A 47 HCVHMRGLPY---------KATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATH-EEAVAAM 103 (139)
T ss_dssp CCEECCSCCT---------TCCHHHHHHHHCS--CCCSEEECCCSSSSCSSCCCEEECSHH-HHHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEECCCCCCceEEEEEeCCH-HHHHHHH
Confidence 4577889986 2367899999999 77889999998887 689999999743 3334444
No 17
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.99 E-value=0.67 Score=37.29 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=41.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc--eeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR--VQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k--v~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
..+.|-|+|. ..+...|++.|+. |.++. |+.+++..| +.|++.|.|.. -..-..|+..
T Consensus 16 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~v~~~v~i~~~~~g~~~G~afV~F~~-~~~a~~A~~~ 76 (104)
T 1wg5_A 16 GFVRLRGLPF---------GCSKEEIVQFFSG--LEIVPNGMTLPVDFQGRSTGEAFVQFAS-QEIAEKALKK 76 (104)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--CCEEEEEEECCBCSSSCBCSEEEEEESS-HHHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCcceeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh
Confidence 4677899986 2367889999998 77654 666777666 68999999975 3334444443
No 18
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.78 E-value=0.74 Score=37.69 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=41.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc--eeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR--VQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k--v~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
++.|-|+|. ..+...|++.|+. |.++. |+.++++.| +.|++.|.|.+ -..-..|+..
T Consensus 17 ~l~V~nLp~---------~~t~~~l~~~F~~--~g~v~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~ 76 (114)
T 2cpy_A 17 CAHITNIPF---------SITKMDVLQFLEG--IPVDENAVHVLVDNNGQGLGQALVQFKN-EDDARKSERL 76 (114)
T ss_dssp EEEEESCCT---------TSCHHHHHHHTTT--SCCCSTTEEECCCTTSSCSSCEEEECSS-HHHHHHHGGG
T ss_pred EEEEeCcCC---------cCCHHHHHHHHHh--CCCcCCeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh
Confidence 466889986 2367889999999 76654 888888877 78999999975 3444555444
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=86.68 E-value=0.99 Score=35.61 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=38.8
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCC--CCceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFR--GHSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~--gh~g~avv~F~~~w 179 (432)
+++|-|+|. ..+...|++.|+.-|..+..|+.+.++. .+.|+|.|.|.+--
T Consensus 3 ~i~v~nLp~---------~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 3 IVMLRMLPQ---------AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp EEEEETCCS---------SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH
Confidence 577889987 3477899999999444467788877654 37899999997643
No 20
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.43 E-value=0.81 Score=37.90 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=44.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC----cceeeecCCCC-CceeEEEEeCCCccchHHHHhhH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP----TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAFE 189 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p----~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~fe 189 (432)
.++.|-|+|. -.+..+|++.|+. |.+ ..|+.++++.| ++|++.|.|.+ -..-..|+.++
T Consensus 18 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~ 81 (118)
T 2db1_A 18 YVVKLRGLPW---------SCSIEDVQNFLSD--CTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKKD 81 (118)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--SCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGGT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--cCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhcC
Confidence 4577889986 2367889999999 765 67888888777 68999999975 45556666643
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.42 E-value=1.2 Score=35.35 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=41.3
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
-.+.|-|+|. ..+...|++.|+. |.++ .++...+..++.|++.|.|...- .-..|+.
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~~~-~a~~A~~ 73 (103)
T 2cqi_A 16 RTLYVGNLSR---------DVTEVLILQLFSQ--IGPCKSCKMITEHTSNDPYCFVEFYEHR-DAAAALA 73 (103)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEEEECCCCSSCCEEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCc---------cCCHHHHHHHHHh--cCCEeEEEEEecCCCCCCEEEEEECCHH-HHHHHHH
Confidence 3566889986 3477889999999 8764 56667777778999999998533 3344444
No 22
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=86.31 E-value=1.2 Score=34.70 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=40.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
.++.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|++.|.|...-.- ..|+.
T Consensus 17 ~~l~v~nlp~---------~~~~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a-~~A~~ 75 (95)
T 2ywk_A 17 RTVFVGNLEA---------RVREEILYELFLQ--AGPLTKVTICKDREGKPKSFGFVCFKHPESV-SYAIA 75 (95)
T ss_dssp GEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSTHHH-HHHHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCCceEEEEEECCHHHH-HHHHH
Confidence 4577899986 3467889999999 765 45666666666 589999999875443 34443
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.24 E-value=18 Score=41.33 Aligned_cols=9 Identities=11% Similarity=0.464 Sum_probs=6.0
Q ss_pred hHHHHHHhh
Q 047081 19 YEDRSYEKL 27 (432)
Q Consensus 19 y~~~~Y~~L 27 (432)
|-.+.|...
T Consensus 523 f~~kl~~~~ 531 (1080)
T 2dfs_A 523 WAQKLYNTH 531 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666777665
No 24
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.23 E-value=2.9 Score=48.06 Aligned_cols=9 Identities=0% Similarity=0.265 Sum_probs=5.0
Q ss_pred hHHHHHHhh
Q 047081 19 YEDRSYEKL 27 (432)
Q Consensus 19 y~~~~Y~~L 27 (432)
|-.+.|..+
T Consensus 554 ~~~kl~~~~ 562 (1184)
T 1i84_S 554 FVEKLIQEQ 562 (1184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555555
No 25
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.71 E-value=0.8 Score=36.52 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=43.6
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCC--C-CceeEEEEeCCCccchHHHHhhHh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFR--G-HSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~--g-h~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
|.++.|-|+|. ..+...|++.|+. |.+..|....++. | +.|++.|.|.+. ..-..|+.|+.
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~g 78 (104)
T 1wi8_A 15 PYTAFLGNLPY---------DVTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSALSLNE 78 (104)
T ss_dssp CEEEEEESCCS---------SCCHHHHHHHTTT--SCEEEEECCBCSSCTTSBCSCEEEEESSH-HHHHHHHGGGT
T ss_pred CCEEEEeCCCC---------cCCHHHHHHHHHH--CCceEEEEecCCCCCCCcCeEEEEEECCH-HHHHHHHhcCC
Confidence 36778999986 2467889999999 6577777777653 4 689999999753 34455555443
No 26
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.60 E-value=1.3 Score=35.77 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=41.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc---------eeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR---------VQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k---------v~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|++.|+. |.++. ++..+++ .| ..|+|.|.|.+.- .-..|+.
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 83 (113)
T 2cpe_A 16 SAIYVQGLND---------SVTLDDLADFFKQ--CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP-TAKAAVE 83 (113)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHTT--TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHH-HHHHHHH
T ss_pred CEEEEcCCCC---------CCCHHHHHHHHHh--cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHH-HHHHHHH
Confidence 4577899986 3467889999999 88876 7777764 34 6899999998543 3344444
No 27
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.54 E-value=1.1 Score=35.20 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=37.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
..+.|-|+|. ..+...|++.|+. |.++.+...++ .+.|++.|.|.+.-
T Consensus 20 ~~l~V~nL~~---------~~t~~~l~~~F~~--~G~v~~~~~~~--~~~g~afV~f~~~~ 67 (97)
T 2e5j_A 20 ADVYVGNLPR---------DARVSDLKRALRE--LGSVPLRLTWQ--GPRRRAFLHYPDSA 67 (97)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHH--TTCCCSEEEEE--TTTTEEEEECSSHH
T ss_pred CEEEEeCCCC---------cCcHHHHHHHHHh--cCCEEEEEEcC--CCCcEEEEEECCHH
Confidence 4677889986 3467889999999 88877766654 57789999998743
No 28
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.36 E-value=1.2 Score=36.25 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=38.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCCcc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKNWP 180 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~w~ 180 (432)
-++.|-|++. ..+...|++.|+. |.+ ..++...+..+..|++.|.|...-.
T Consensus 30 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~~kg~afV~f~~~~~ 81 (109)
T 2err_A 30 KRLHVSNIPF---------RFRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENSAD 81 (109)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHGGG--TCCCSCEEECCBTTBCTTEEEEECCCSHH
T ss_pred CEEEEECCCC---------cCCHHHHHHHHHh--cCCEEEEEEEECCCCCceEEEEEECCHHH
Confidence 3456889886 3467889999999 765 4666666767789999999987544
No 29
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.03 E-value=1.6 Score=35.07 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=39.3
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~ 186 (432)
.++.|-|+|. ..+...|++.|+. |.++....+.....+.|++.|.|...- .-..|+
T Consensus 23 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~i~~~~~~~g~afV~f~~~~-~A~~A~ 78 (109)
T 1x4a_A 23 CRIYVGNLPP---------DIRTKDIEDVFYK--YGAIRDIDLKNRRGGPPFAFVEFEDPR-DAEDAV 78 (109)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEECCSSSSSCCEEEEESCHH-HHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEECCHH-HHHHHH
Confidence 4566889986 3467889999999 877655445444457899999997643 334444
No 30
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=84.85 E-value=1.5 Score=34.91 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=38.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~g-h~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|.+.|+. |.++ .+....++.| +.|++.|.|.+.
T Consensus 30 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 30 GKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 4577889986 3467889999999 8764 6777777766 589999999853
No 31
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=84.08 E-value=23 Score=36.15 Aligned_cols=114 Identities=12% Similarity=0.177 Sum_probs=63.6
Q ss_pred cCCCCCCcchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH---HHHHH
Q 047081 219 SDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEE---KDRLV 295 (432)
Q Consensus 219 adD~~~~~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~mee---k~~l~ 295 (432)
.+|+...=|-|=-|+ .+..+..+.-..-|..|++.|+.-.+.-...-.-+..++..|+..+.+ ++...
T Consensus 41 DeDwG~kCPsGCrLq---------g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~ 111 (390)
T 1deq_A 41 DEDWNTKCPSGCRMK---------GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTF 111 (390)
T ss_pred hhhccCCCCccchHH---------HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 566655444442222 234444455555566666666666555555555555555556555544 46666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHH
Q 047081 296 QGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDL 341 (432)
Q Consensus 296 ~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL 341 (432)
.+|.++++.-+..-.+.+..-|....-|+.-|+.+..++..=...+
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766655555555555555666666666555544433333
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.98 E-value=6.1 Score=41.81 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 047081 250 RKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEA 329 (432)
Q Consensus 250 rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~ 329 (432)
+..++.+..+.+++.......++++..|++.+.-|++..+.-+.-++.--.-|+.+|.. ++.+..++++|.+.++.
T Consensus 81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn----Ledq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN----VRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 35566777777777777788889999999999999998877433333333666666655 44555678999999999
Q ss_pred HHHHHHHhhh
Q 047081 330 QKKELEFLGV 339 (432)
Q Consensus 330 k~~eL~~r~~ 339 (432)
|++.=.--|.
T Consensus 157 qirsCKgsCs 166 (562)
T 3ghg_A 157 KIRSCRGSCS 166 (562)
T ss_dssp HHHHGGGTBS
T ss_pred HHHhcccccc
Confidence 9987555443
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.78 E-value=1.1 Score=35.52 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=41.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCC-C-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
..+.|-|+|. ..+...|++.|+. |....++.+.++. | +.|++.|.|.+ ...-..|+.|
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~gi~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l 75 (103)
T 2dng_A 16 YTAYVGNLPF---------NTVQGDIDAIFKD--LSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALTY 75 (103)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHTTT--SCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHGGG
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--CCceEEEEeecCCCCccceEEEEEECC-HHHHHHHHhh
Confidence 5677889986 3467889999999 8666777777654 4 68999999985 3344445443
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.24 E-value=1.7 Score=34.27 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=36.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~ 178 (432)
-++.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|++.|.|...
T Consensus 18 ~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~ 68 (100)
T 2do4_A 18 HKLFISGLPF---------SCTKEELEEICKA--HGTVKDLRLVTNRAGKPKGLAYVEYENE 68 (100)
T ss_dssp SCEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEEECCCCCEEeEEEEEECCH
Confidence 4566889986 3467889999999 775 45666666655 679999999763
No 35
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=82.93 E-value=2.1 Score=33.59 Aligned_cols=48 Identities=13% Similarity=-0.005 Sum_probs=36.0
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCc
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w 179 (432)
|+++.|-|+|. ..+...|++.|+. |.++ .++... .+.|++.|.|...-
T Consensus 11 ~~~l~V~~Lp~---------~~te~~L~~~F~~--~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTE---------DMTAEELQQFFCQ--YGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHhc--cCCEEEEEEee---CCCCEEEEEECCHH
Confidence 57788999986 3477889999999 8763 344443 47899999998743
No 36
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=82.80 E-value=1.8 Score=33.28 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=35.0
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc-eeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR-VQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~gh~g~avv~F~~~ 178 (432)
-.+.|-|+|. ..+...|++.|+. |.++. +........+.|++.|.|.+.
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~~~i~~~~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 9 CQIFVRNLPF---------DFTWKMLKDKFNE--CGHVLYADIKMENGKSKGCGVVKFESP 58 (92)
T ss_dssp CEEEECSCCT---------TCCHHHHHHHHHT--TSCEEEEEEEESSSCEEEEEEEEESSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEccCCCcceEEEEEECCH
Confidence 3567889986 3477899999999 87644 444443333789999999863
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=82.73 E-value=1.9 Score=34.14 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=37.5
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCc
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNW 179 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w 179 (432)
+.++.|-|+|. ..+...|.+.|+. |.+ ..+....++.| +.|++.|.|...-
T Consensus 15 ~~~l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 67 (105)
T 2dnh_A 15 DRKLFVGMLNK---------QQSEEDVLRLFQP--FGVIDECTVLRGPDGSSKGCAFVKFSSHT 67 (105)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECSSSCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcCcEEEEEeCCHH
Confidence 35567889986 3367889999999 865 45566666655 5799999998743
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.09 E-value=2.8 Score=32.50 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=39.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ce-eeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RV-QSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv-~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|.+.|+. |.++ .+ +.+.++ .| +.|++.|.|.+.- .-..|+.
T Consensus 6 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~ 66 (96)
T 1x5t_A 6 SGIFIGNLDP---------EIDEKLLYDTFSA--FGVILQTPKIMRDPDTGNSKGYAFINFASFD-ASDAAIE 66 (96)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHT--TSCBSSCCEECCCTTTCSCCSEEEEEBSSHH-HHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEEcCCCCCcCeEEEEEECCHH-HHHHHHH
Confidence 3567889986 3467889999999 8765 45 566652 34 6899999998643 3344444
No 39
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=81.73 E-value=1.5 Score=37.79 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=43.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC----cceeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP----TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p----~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
.++.|-|+|. -.+...|++.|+. |.+ ..|+.++++.| .+|++.|.|.+ -.....|+.+
T Consensus 45 ~~lfVgnLp~---------~~te~dL~~~F~~--~G~v~~v~~v~i~~d~~g~srG~aFV~F~~-~e~a~~Al~~ 107 (136)
T 2hgl_A 45 FVVKLRGLPW---------SCSVEDVQNFLSD--CTIHDGAAGVHFIYTREGRQSGEAFVELGS-EDDVKMALKK 107 (136)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--CCCSSSSTTEEEEECSSSCEEEEEEEECSS-HHHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCcCceeEEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 4567899986 2367889999999 765 57888888777 68999999985 3445555553
No 40
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.61 E-value=2.8 Score=34.03 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=40.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
-++.|-|+|. -.+...|++.|+. |.+ ..|+...++.| +.|++.|.|.+ -..-..|+.
T Consensus 12 ~~lfV~~Lp~---------~~te~~L~~~F~~--~G~v~~v~i~~d~~g~~rG~aFV~F~~-~e~a~~Ai~ 70 (103)
T 1s79_A 12 RSVYIKGFPT---------DATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDS-IESAKKFVE 70 (103)
T ss_dssp GCEEEECCCT---------TCCHHHHHHHHHT--SSCEEEEEEECCCTTSCCCEEEEEESS-HHHHHHHHT
T ss_pred CEEEEECCCC---------CCCHHHHHHHHhh--cCCEEEEEEEECCCCCCccEEEEEECC-HHHHHHHHH
Confidence 4567889886 2367889999999 876 45666666555 78999999975 333444444
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=81.20 E-value=2.5 Score=33.24 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=40.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc---------eeeecCCC-C-CceeEEEEeCCCccchHHHH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR---------VQSLWNFR-G-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k---------v~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
..+.|-|+|. ..+...|++.|+. |.+.. ++...++. | ..|++.|.|.+.-. -..|+
T Consensus 14 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~-a~~Ai 80 (99)
T 2la6_A 14 NTIFVQGLGE---------NVTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS-AKAAI 80 (99)
T ss_dssp SEEEEECCCS---------SCCHHHHHHHHTT--TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHH-HHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHH-HHHHH
Confidence 5677889986 3478899999999 77765 66666643 4 68999999986443 23444
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=81.02 E-value=1.7 Score=35.54 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=40.4
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCCccchHHHH
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~ 186 (432)
+.|-|+|. ..+...|++.|+. |.+ ..|+...+..++.|++.|.|.+.-. -..|+
T Consensus 8 lfV~nLp~---------~~te~~L~~~F~~--~G~v~~v~i~~d~~~~kg~afV~f~~~~~-A~~Ai 62 (115)
T 4f25_A 8 IFIKNLDK---------SIDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQEA-AERAI 62 (115)
T ss_dssp EEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESCHHH-HHHHH
T ss_pred EEECCCCC---------CCCHHHHHHHHhc--cCCEEEEEEeecCCCCCceEEEEECCHHH-HHHHH
Confidence 56888886 3467899999999 876 4577777777789999999986433 33444
No 43
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=81.01 E-value=1.7 Score=33.70 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=40.0
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc-eeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR-VQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
|.++.|-|+|. ..+...|++.|+. |.++. +..+..+ .| ++|++.|.|.+. ..-..|+.
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~-~~a~~Ai~ 75 (95)
T 2ek1_A 15 PTVIKVQNMPF---------TVSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESR-DEATAAVI 75 (95)
T ss_dssp CEEEEEECCCT---------TCCHHHHHHHTTT--SCBCTTCCEEEECTTSCEEEEEEEEESSH-HHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCccceEEEEeCCCCCEeeEEEEEECCH-HHHHHHHH
Confidence 46788999986 3467889999999 77654 5555533 34 689999999754 33344443
No 44
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=80.70 E-value=2.8 Score=33.83 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=35.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|.+.|+. |.++.-..+.......|++.|.|.+.
T Consensus 10 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~g~afV~f~~~ 57 (115)
T 3lqv_A 10 ILYIRNLPY---------KITAEEMYDIFGK--YGPIRQIRVGNTPETRGTAYVVYEDI 57 (115)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEECSTTTTTCEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeCCCCCcEEEEEECCH
Confidence 567889986 3467889999999 87755444433344589999999864
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.61 E-value=3.1 Score=32.93 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=36.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC--CC-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF--RG-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~g-h~g~avv~F~~~w 179 (432)
..+.|-|+|. ..+...|++.|+. |.++ .|+.+.++ .| +.|++.|.|...-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~ 69 (107)
T 2cph_A 16 SKILVRNIPF---------QANQREIRELFST--FGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 69 (107)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCCCCSSSCSSCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------cCCHHHHHHHHHc--cCCeEEEEEecCCCCCCCcCceEEEEECCHH
Confidence 4466889986 3467889999999 8765 45555552 33 7899999998743
No 46
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.61 E-value=1.5 Score=36.19 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=40.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc--eeeecCCCC-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR--VQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k--v~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
.++.|-|+|. ..+...|++.|+. |.++. +.+.....| +.|++.|.|.+.- .-..|+.+
T Consensus 26 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~~ 86 (124)
T 1wel_A 26 FCVYLKGLPF---------EAENKHVIDFFKK--LDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALCR 86 (124)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHSCS--SCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHTS
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHHh
Confidence 5677999986 2367889999998 77754 344445556 5899999998643 34555553
No 47
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=80.49 E-value=3.3 Score=34.01 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=40.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
.++.|-|++. ..+...|++.|+. |.+ ..++...+..| +.|++.|.|.+-- .-..|+.
T Consensus 36 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 94 (124)
T 2kt5_A 36 AKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERRA-DALKAMK 94 (124)
T ss_dssp EEEEEESCCS---------SCCHHHHHHHHHT--TSCCSEEEEECCSSSSCCSEEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 4577889986 3467889999999 764 56677776666 6899999997633 2334443
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.97 E-value=3 Score=32.93 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=36.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|.+.|+. |.++ .+....++ .| +.|++.|.|...
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 16 ATVYVGGLDE---------KVSEPLLWELFLQ--AGPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp TEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 4577889986 2467889999999 8664 55555554 23 789999999774
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.65 E-value=3.5 Score=32.21 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=35.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
-++.|-|+|. ..+...|++.|+. |.++ .+....++ .| +.|++.|.|.+.
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 60 (99)
T 1whw_A 9 GRLFVRNLSY---------TSSEEDLEKLFSA--YGPLSELHYPIDSLTKKPKGFAFVTFMFP 60 (99)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCCCTTTCCCCSEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEEecCCCCCcCeEEEEEECCH
Confidence 3567889986 3467889999999 8764 45555554 33 679999999874
No 50
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.62 E-value=4.2 Score=32.76 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=42.4
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCCccchHHHHhhHh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
..++.|-|+|. ..+...|++.|+. |.+ ..|....++. | +.|++.|.|.. ...-..|+.|+.
T Consensus 25 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~g 88 (114)
T 2cq4_A 25 ARTVFCMQLAA---------RIRPRDLEDFFSA--VGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLTG 88 (114)
T ss_dssp HTEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcCC
Confidence 35667899986 2367889999999 765 4556666554 3 78999999965 445556665543
No 51
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=79.37 E-value=3.6 Score=30.40 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=37.7
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
+.|-|+|. ..+...|++.|+. |.+. .+....++ .| +.|++.|.|.+. ..-..|+.
T Consensus 2 l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSV---------NTTVEDVKHYFEQ--FGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCE 59 (75)
T ss_dssp EEEECCCS---------SCCHHHHHHHHHT--TSCCSEECCCBCSSSTTSCBEEEEECSCH-HHHHHHHS
T ss_pred EEEecCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 45778886 3467889999999 8764 45555554 23 789999999875 33455554
No 52
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=79.05 E-value=2.9 Score=32.93 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=40.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|++.|.|.+.- .-..|+.
T Consensus 10 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~-~a~~Ai~ 68 (102)
T 2xs2_A 10 NTVFVGGIDV---------RMDETEIRSFFAR--YGSVKEVKIITDRTGVSKGYGFVSFYNDV-DVQKIVE 68 (102)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSCC-CHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEEECCCCCccceEEEEECCHH-HHHHHHh
Confidence 4577889886 3467889999999 765 45666666655 6799999998644 3355554
No 53
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=78.99 E-value=3.1 Score=35.04 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=37.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w 179 (432)
-.+.|-|+|. ..+...|++.|+. |.+ ..+....++.| +.|++.|.|.+.-
T Consensus 96 ~~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 96 RKLFIGMISK---------KCTENDIRVMFSS--FGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CeEEEcCCCC---------cCCHHHHHHHHHh--CCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 3567889986 3467889999999 865 55666667677 4899999998743
No 54
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=78.78 E-value=3.9 Score=33.52 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=36.3
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|.+.|+. |.+ ..|....+..| ..|++.|.|.+.
T Consensus 9 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 9 KLFIGGLNR---------ETNEKMLKAVFGK--HGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp EEEEECCTT---------TCCHHHHHHHHHT--SSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 466889986 3477889999999 765 45666666655 679999999763
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=78.54 E-value=3.1 Score=31.56 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=37.2
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc-eeeecCCC--C-CceeEEEEeCCCcc
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR-VQSLWNFR--G-HSGCALVQFNKNWP 180 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~--g-h~g~avv~F~~~w~ 180 (432)
|-.+.|-|+|. ..+...|.+.|+. |.+.. +....+.. + +.|++.|.|.+.-.
T Consensus 4 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 4 PTKVHIGRLTR---------NVTKDHIMEIFST--YGKIKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 45677889986 3467889999999 87643 44444442 4 78999999987543
No 56
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=77.79 E-value=30 Score=31.84 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=46.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCccchHHHHhh-Hhhhhhc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMAF-EKSFEAD 195 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~f-e~~Fe~~ 195 (432)
..+.|-|+|. ..+...|++.|+. |.+ ..|..+.+..| ++|++.|.|.+.-.--.--..| ...|-..
T Consensus 97 ~~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 97 AALTVKNLSP---------VVSNELLEQAFSQ--FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred CcccccCCCC---------CCCHHHHHHHHHh--cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 3577889886 2367889999999 766 46677777666 6899999998764443333333 3334444
Q ss_pred cCCh
Q 047081 196 HHGK 199 (432)
Q Consensus 196 ~~Gr 199 (432)
+.||
T Consensus 166 ~~~r 169 (261)
T 3sde_A 166 TTPR 169 (261)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 4444
No 57
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=77.71 E-value=4 Score=30.81 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=33.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~ 178 (432)
++.|-|+|. ..++. ...+...|++.|+. |.++.-..+....| +.|++.|.|.+.
T Consensus 3 ~l~V~nLp~-~~~~~--~~~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 3 VIVVDNVPQ-VGPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASP 57 (81)
T ss_dssp EEEEESCCC-CCTTT--HHHHHHHHHHHHHT--TCCEEEEECCCBTTBCCCEEEEEESSH
T ss_pred EEEEeCCCC-CcHHH--HHHHHHHHHHHHhh--cCCeEEEEecCCCCcEeEEEEEEECCH
Confidence 467889885 11110 01145789999999 87754333333344 679999999864
No 58
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=77.63 E-value=3.7 Score=36.57 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=38.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+. |.+ ..|...++..| +.|+|.|.|...
T Consensus 89 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~g~~kG~afV~F~~~ 139 (177)
T 2f3j_A 89 AKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERR 139 (177)
T ss_dssp EEEEEECCCS---------CCCHHHHHHHHHH--TSCCSEEEECCCTTSSCSCCEEEEESCH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCEeeEEEEEeCCH
Confidence 4777889986 4578889999999 865 46666666655 679999999864
No 59
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.62 E-value=3.1 Score=33.40 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=36.5
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|++.|.|.+.
T Consensus 17 ~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 17 TVFVANLDY---------KVGWKKLKEVFSM--AGVVVRADILEDKDGKSRGIGTVTFEQS 66 (114)
T ss_dssp CEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTCSEEEEEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCeeeEEEEEECCH
Confidence 466889986 2367889999999 765 45666666666 589999999863
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.47 E-value=40 Score=30.21 Aligned_cols=66 Identities=26% Similarity=0.429 Sum_probs=42.0
Q ss_pred HhhcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh----HHHHHh
Q 047081 345 EAKNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQAL----ELEIER 420 (432)
Q Consensus 345 ~~~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~L----ELEi~q 420 (432)
....+..+.+++.|++. |-.+=.++ |.. .|-+-+++...+..|.-+|++||..+..+ +.++..
T Consensus 74 R~~aE~~~~~ie~ElEe-------LTasLFeE--AN~----MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 74 RTKAEEEADKLNKEVED-------LTASLFDE--ANN----MVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHTHHHHHHHHHHH-------HHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555554 44455555 443 34455888888999999999999988753 445555
Q ss_pred hhc
Q 047081 421 LRG 423 (432)
Q Consensus 421 LkG 423 (432)
||.
T Consensus 141 LK~ 143 (154)
T 2ocy_A 141 LKK 143 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.39 E-value=2.5 Score=33.01 Aligned_cols=56 Identities=23% Similarity=0.138 Sum_probs=38.3
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc-eeeecC-CCC-CceeEEEEeCCCccchHHHH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR-VQSLWN-FRG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~-~~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
..+.|-|+|. ..+...|++.|+. |.++. +..+.. ..| +.|++.|.|.+.- .-..|+
T Consensus 16 ~~l~v~nLp~---------~~t~~~l~~~F~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~-~a~~Ai 74 (98)
T 2cqp_A 16 TIIKVQNMPF---------TVSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESRD-EATAAV 74 (98)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHTTT--SCCCTTTCEEEECSSSCEEEEEEEEESCHH-HHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--cCCccceEEEEECCCCCeeeEEEEEECCHH-HHHHHH
Confidence 4577889986 3467889999999 77764 444443 334 6899999997643 333444
No 62
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.14 E-value=4.1 Score=32.12 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=38.5
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
.+.|-|+|. ..+...|++.|+. |.++ .++...++. | +.|++.|.|... ..-..|+.
T Consensus 17 ~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 75 (103)
T 2cqg_A 17 DLIVLGLPW---------KTTEQDLKEYFST--FGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVMS 75 (103)
T ss_dssp CEEEESCCS---------SCCHHHHHHHHGG--GSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHHH
T ss_pred EEEEEcCCC---------cCCHHHHHHHHHh--cCCeEEEEEEecCCCCCccceEEEEECCH-HHHHHHHH
Confidence 466889886 2367889999999 8764 566666543 4 689999999753 33344443
No 63
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=75.98 E-value=4.6 Score=31.93 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=40.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCCccchHHHHh-hHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA-FEK 190 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~-fe~ 190 (432)
..+.|-|+|. ..+...|++.|+. |.+ ..|+.+.++. | +.|++.|.|...-. -..|+. |+.
T Consensus 14 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~A~~~l~g 77 (106)
T 2dgp_A 14 IKLFIGQIPR---------NLDEKDLKPLFEE--FGKIYELTVLKDRFTGMHKGCAFLTYCERES-ALKAQSALHE 77 (106)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHH--HSCCCEEECCCCSSSCSCCSEEEEEESSHHH-HHHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEecCCCCCcceEEEEEECCHHH-HHHHHHHhcC
Confidence 4566889986 3467889999999 765 4566555543 3 78999999986433 344443 444
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=75.72 E-value=3.6 Score=35.68 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=40.3
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
++++.|-|+|. ..+...|.+.|+. |.++ .|....++ .| +.|+++|.|.. ...-..|+.
T Consensus 72 ~~~l~V~nLp~---------~~t~~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~ 132 (165)
T 1rk8_A 72 GWILFVTSIHE---------EAQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAKE 132 (165)
T ss_dssp CEEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHhhc--CCCEEEEEEEecCCCCcEeeEEEEEECC-HHHHHHHHH
Confidence 47788999996 3478889999999 8765 44444443 34 68999999985 333444443
No 65
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=75.70 E-value=4 Score=33.93 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=38.3
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCC-CceeEEEEeCCCccchHHHH
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
++.|-|+|. ..+...|.+.|+. |.++ .+....++.| +.|+|.|.|.+.- .-..|+
T Consensus 2 ~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~g~afV~f~~~~-~a~~A~ 58 (166)
T 3md3_A 2 VLYVGNLDK---------AITEDILKQYFQV--GGPIANIKIMIDKNNKNVNYAFVEYHQSH-DANIAL 58 (166)
T ss_dssp EEEEEEEET---------TCCHHHHHHHHGG--GSCEEEEEEECCCC-CCEEEEEEEESSHH-HHHHHH
T ss_pred EEEECCCCC---------cCCHHHHHHHHHh--cCCeEEEEEEECCCCCCCCEEEEEeCCHH-HHHHHH
Confidence 356888886 3467889999999 7664 4666666655 7799999997643 333444
No 66
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=75.70 E-value=2.1 Score=33.94 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=40.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCC--CC-CceeEEEEeCCCccchHHHHhhH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNF--RG-HSGCALVQFNKNWPGLDNAMAFE 189 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~--~g-h~g~avv~F~~~w~Gf~~A~~fe 189 (432)
.++.|-|++. ..+...|++.|+. |....++...+. .| +.|++.|.|.+ ...-..|+.+.
T Consensus 20 ~~l~V~nLp~---------~~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~l~ 81 (100)
T 2j76_E 20 YTAFLGNLPY---------DVTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSALSLN 81 (100)
T ss_dssp CEEEESCCSS---------CCSSSHHHHHSCS--SCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHHHTT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHHhcC
Confidence 4566889886 2366789999999 556666666654 34 68999999974 44455555443
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.58 E-value=4.8 Score=30.96 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+. |.++ .+...+++. | +.|++.|.|.+.
T Consensus 16 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 67 (95)
T 2cqc_A 16 CCLGVFGLSL---------YTTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENV 67 (95)
T ss_dssp GCEEEESCCS---------SCCHHHHHHHHHT--TSCEEEEEEEECSSSSSEEEEEEEEESSH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEcCCCCCcccEEEEEECCH
Confidence 3466889986 2467889999999 8764 555665554 3 679999999864
No 68
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.08 E-value=4.8 Score=31.56 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=35.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+. |.++ .+....++. | +.|++.|.|.+-
T Consensus 13 ~~l~v~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 13 GKLFVGGLSF---------DTNEQSLEQVFSK--YGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHHH--HSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 4567889986 2467889999999 7664 555555543 3 689999999763
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.06 E-value=5.6 Score=30.65 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=35.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
-.+.|-|+|. ..+...|++.|+. |.+ ..+....++. | +.|++.|.|.+.
T Consensus 6 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 6 SGLYVGSLHF---------NITEDMLRGIFEP--FGKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 3567889986 3477889999999 765 4555555543 3 689999999873
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=74.96 E-value=5.1 Score=30.26 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=35.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|++.|+. |.+ ..+....++ .| +.|++.|.|.+.
T Consensus 7 ~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 7 FHVFVGDLSP---------EITTAAIAAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 4577889986 3477889999999 765 455555553 33 689999999753
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.95 E-value=3.2 Score=32.33 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=35.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-----CCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-----GHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-----gh~g~avv~F~~~ 178 (432)
.+.|-|+|. ..+...|++.|+. |.++ .+....++. -+.|++.|.|.+.
T Consensus 7 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 7 GLFIKNLNF---------STTEETLKGVFSK--VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 467889886 3467889999999 8764 455555443 3679999999863
No 72
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=74.81 E-value=5.1 Score=32.03 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=36.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
.+.|-|+|. ..+...|++.|+. |.++ .++...++. | +.|+|.|.|.+.
T Consensus 21 ~lfV~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 21 NLIVNYLPQ---------NMTQDELRSLFSS--IGEVESAKLIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEeEeeecCCCCcccccEEEEECCH
Confidence 467889996 3467899999999 8764 556665543 4 779999999864
No 73
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.33 E-value=4.9 Score=29.62 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=38.7
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC--CCceeEEEEeCCCccchHHHHhh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR--GHSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--gh~g~avv~F~~~w~Gf~~A~~f 188 (432)
++.|-|+|. ..+...|++.|+. |.+ ..+....++. .+.|++.|.|.+.- .-..|+..
T Consensus 2 ~l~v~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~ 61 (77)
T 1uaw_A 2 KMFIGGLSW---------QTTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLAQ 61 (77)
T ss_dssp CEEEESCCS---------SCCSHHHHHHHTT--TSCCCCEEEECCCCSSSCSSEEEECCCCTT-HHHHHHHT
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEecCCCCCCcCceEEEEEcCHH-HHHHHHHh
Confidence 466889886 3467889999999 765 4455555543 37899999998643 34444443
No 74
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=74.32 E-value=4.7 Score=33.42 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=33.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNK 177 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~ 177 (432)
+.+.|-|+|. ..+...|++.|+.-|+....+.+.. ....|++.|.|.+
T Consensus 29 ~~l~VgnLp~---------~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 29 YRITMKNLPE---------GCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPS 76 (111)
T ss_dssp EEEEEECSSC---------CCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESS
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECC
Confidence 5788999986 3467899999999333233333322 3478999999986
No 75
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=73.94 E-value=4.9 Score=32.85 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=37.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
++.|-|++. ..+...|++.|+. |.+ ..|+..+++. | +.|++.|.|.+.
T Consensus 8 ~lfV~nL~~---------~~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~aFV~f~~~ 58 (110)
T 3s8s_A 8 EVTFARLND---------NVRETFLKDMCRK--YGEVEEVEILLHPRTRKHLGLARVLFTST 58 (110)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCeeEEEEEECCCCCceeeEEEEEECCH
Confidence 567889885 3467889999999 876 5566777665 4 789999999874
No 76
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=73.56 E-value=4.7 Score=32.47 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=36.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|++.|+. |.+ ..++...++ .| +.|++.|.|...
T Consensus 26 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 26 ANLFIYHLPQ---------EFGDQDLLQMFMP--FGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CCEEEESCCS---------SCCHHHHHHHHGG--GSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 3566889986 2467889999999 865 456666665 33 679999999853
No 77
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.48 E-value=3.9 Score=32.33 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=40.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
..+.|-|+|. ..+...|++.|+. |.++ .|+...++. | +.|++.|.|.+. ..-..|+..
T Consensus 17 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDW---------STTQETLRSYFSQ--YGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 4466889886 2467889999999 8664 556666533 3 679999999863 444555554
No 78
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.81 E-value=3.2 Score=33.37 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=37.3
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCC
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKN 178 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~ 178 (432)
|-.+.|-|+|. ..+...|++.|+. |.+ ..++...++.| +.|++.|.|.+.
T Consensus 25 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 25 PTNLYISNLPL---------SMDEQELENMLKP--FGQVISTRILRDSSGTSRGVGFARMEST 76 (114)
T ss_dssp TTEEEEESCCT---------TCCHHHHHHTTTT--TSCEEEEEEEECSSSCEEEEEEEEESCH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCcceEEEEEECCH
Confidence 45677889986 3467889999998 754 55666666655 579999999863
No 79
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=72.66 E-value=7.1 Score=30.34 Aligned_cols=49 Identities=16% Similarity=0.347 Sum_probs=35.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w 179 (432)
.+.|-|+|. ..+...|++.|+. |.++ .++...++. | +.|+|.|.|.+.-
T Consensus 4 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 4 VVYLGSIPY---------DQTEEQILDLCSN--VGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 466888886 3467889999999 7664 455555543 3 6899999998643
No 80
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=72.40 E-value=1.3 Score=30.19 Aligned_cols=29 Identities=34% Similarity=0.616 Sum_probs=20.3
Q ss_pred cCCceEeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 29 SGNYNVKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 29 ~g~~~vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
||+-+|+ -+|-||..+ +-+.+.|+-|-..
T Consensus 3 sgsskik-----qhcrfckkk---ysdvknlikhire 31 (37)
T 2elu_A 3 SGSSGIK-----QHCRFCKKK---YSDVKNLIKHIRD 31 (37)
T ss_dssp SCCCCCC-----CEETTTTEE---CSSHHHHHHHHHH
T ss_pred CchHHHH-----HHHHHHHHH---HHHHHHHHHHHHH
Confidence 4555555 699999632 3389999999654
No 81
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.23 E-value=3.3 Score=32.70 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=35.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|++.|+. |.++ .+.......-+.|++.|.|..-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 16 VNLYVKNLDD---------GIDDERLRKAFSP--FGTITSAKVMMEGGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCEEEECCCT---------TCCHHHHHHTTTT--TSCEEEEEEEECSSSEEEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEcCCCCcCEEEEEEECCH
Confidence 3466889986 3467889999998 7654 5555555233789999999853
No 82
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=71.81 E-value=5.4 Score=30.00 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=35.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |.+. .+....++ .| +.|+|.|.|.+.-
T Consensus 8 ~~l~V~nl~~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 60 (85)
T 3mdf_A 8 RVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 60 (85)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHhc--cCCEEEEEEEECCCCCccccEEEEEECCHH
Confidence 3567889886 2367889999999 7654 44444442 34 7899999998643
No 83
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=71.54 E-value=6.7 Score=29.30 Aligned_cols=49 Identities=14% Similarity=0.377 Sum_probs=35.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
+.+.|-|+|. ..+...|++.|+. |.+ ..+....++. | +.|++.|.|.+.
T Consensus 2 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 2 FNLFVGDLNV---------NVDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEcCCCCCccceEEEEECCH
Confidence 3567889886 3467889999999 766 4455555532 3 689999999864
No 84
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.25 E-value=6 Score=31.67 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=36.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|++.|+. |.+ ..+....+ |++.|.|.. ...-..|+.
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~-----g~afV~f~~-~~~a~~Ai~ 68 (108)
T 1x4c_A 16 NRVVVSGLPP---------SGSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVR-KEDMTYAVR 68 (108)
T ss_dssp CEEEEESCCS---------SCCHHHHHHHHGG--GSCEEEEEEETT-----TEEEEEESS-HHHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEecC-----CEEEEEECC-HHHHHHHHH
Confidence 5678999986 3468899999999 765 34444443 899999977 333445554
No 85
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=70.82 E-value=7.2 Score=31.01 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=35.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |.++ .+....++. | +.|++.|.|...-
T Consensus 27 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 79 (110)
T 1oo0_B 27 WILFVTSIHE---------EAQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYETHK 79 (110)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEECCBCTTTSSBCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4566889986 3467889999999 8664 444444432 3 6899999998543
No 86
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=70.58 E-value=8.7 Score=31.28 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=35.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
+.+.|-|+|. ..+...|++.|+. |.++ .+..+.+ |++.|.|.+ ...-..|+.
T Consensus 17 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~i~~~-----g~afV~f~~-~~~a~~Ai~ 69 (115)
T 3beg_B 17 NRVVVSGLPP---------SGSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVR-KEDMTYAVR 69 (115)
T ss_dssp CCEEEEECCS---------SCCTTHHHHHHGG--GSCEEEEEECTT-----SEEEEEESS-HHHHHHHHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEecC-----CEEEEEECC-HHHHHHHHH
Confidence 5678999986 2356789999999 7654 3333332 899999987 344455555
No 87
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.37 E-value=7.8 Score=30.18 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=38.8
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHhh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
.+.|-|+|. ..+...|++.|+. |.++ .++...++. | +.|++.|.|.+. ..-..|+.+
T Consensus 12 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~ 71 (99)
T 2dgs_A 12 KIFVGGIPH---------NCGETELREYFKK--FGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVNM 71 (99)
T ss_dssp EEEEESCCS---------SCCHHHHHHHHSS--SSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHHh
Confidence 456889986 3467889999999 8664 555555542 3 789999999663 334445543
No 88
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.20 E-value=7.2 Score=30.65 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=39.0
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
-.+.|-|+|. ..+...|.+.|+. |.++ .+....++. | +.|++.|.|.+.-. -..|+.
T Consensus 14 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~A~~ 73 (103)
T 2dnm_A 14 ITLKVDNLTY---------RTSPDSLRRVFEK--YGRVGDVYIPREPHTKAPRGFAFVRFHDRRD-AQDAEA 73 (103)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEECCBCSSSCSBCSCEEEEESSSSH-HHHHHH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCCCCeEEEEEECCHHH-HHHHHH
Confidence 4567889986 3477889999999 8764 455555543 3 68999999987443 334443
No 89
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=70.15 E-value=5 Score=32.19 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=37.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC---cceeeecCCC-C-CceeEEEEeCCCcc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP---TRVQSLWNFR-G-HSGCALVQFNKNWP 180 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p---~kv~~l~~~~-g-h~g~avv~F~~~w~ 180 (432)
+++|-|+|. -.+...|++.|+. |.+ ..|+...++. | +.||+.|.|.+.-.
T Consensus 11 tlfV~nL~~---------~~tee~L~~~F~~--~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~ 65 (95)
T 2lkz_A 11 TIILRNIAP---------HTVVDSIMTALSP--YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMD 65 (95)
T ss_dssp EEEEESCCT---------TCCHHHHHHHSTT--TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHh--hCCccEEEEEEEecCCCCCCceEeEEEECCHHH
Confidence 467889986 2367889999999 774 4566666654 3 67999999987543
No 90
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.10 E-value=51 Score=33.86 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=57.7
Q ss_pred hhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-----------hhHHHHHHHHHHHH---
Q 047081 228 IGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIE-----------TSNFIENLMEEKDR--- 293 (432)
Q Consensus 228 iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~-----------~s~sL~~~meek~~--- 293 (432)
|-++|.|+ .-=|....+....+|..+.|.=.....+++.|..+|+. .+..=.+||+|+.+
T Consensus 25 l~d~L~ky------e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~ 98 (411)
T 3ghg_C 25 IADFLSTY------QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEA 98 (411)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh------ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 55555554 33334444455555666666666666677777766543 34444568888644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhH
Q 047081 294 LVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVD 340 (432)
Q Consensus 294 l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~e 340 (432)
++..+...|+.+|.. +.-+..+-.+|..+...|+.+|.+
T Consensus 99 ~~~~~~~~i~~l~~~--------~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 99 SILTHDSSIRYLQEI--------YNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555566655554 444444446777777777777654
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.03 E-value=6 Score=30.41 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=35.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
.+.|-|+|. ..+...|++.|+. |.++ .+....++. | +.|++.|.|.+.
T Consensus 18 ~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 18 TVYVSNLPF---------SLTNNDLYRIFSK--YGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp SEEEESCCT---------TSCHHHHHHHTTT--TSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 466889986 3467889999999 8764 555555544 3 789999999763
No 92
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.96 E-value=31 Score=35.33 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----------hHHHHHHHHHHHHH
Q 047081 245 VEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIET-----------SNFIENLMEEKDRL 294 (432)
Q Consensus 245 ~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~-----------s~sL~~~meek~~l 294 (432)
|....+....+|.-|.|.-...+..++.+...+++. +.+.++|+++..+|
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~ 96 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRY 96 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHH
Confidence 344445555566666666666677777777776653 66777777776544
No 93
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.90 E-value=8.6 Score=30.46 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=36.3
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |.++ .|+..+++. | +.|++.|.|.+.-
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 16 KTVFIRNLSF---------DSEEEALGEVLQQ--FGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 3466889986 3467889999999 8764 455555543 3 6899999998643
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=69.76 E-value=8.9 Score=29.00 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=39.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCC-CC-CceeEEEEeCCCccchHHHHhhH
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMAFE 189 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~fe 189 (432)
++.|-|+|. ..+...|++.|+. |.+ ..+....++ .| +.|++.|.|.+.- .-..|+.++
T Consensus 8 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~~ 68 (89)
T 3ucg_A 8 SIYVGNVDY---------GATAEELEAHFHG--CGSVNRVTILCDKFSGHPKGFAYIEFSDKE-SVRTSLALD 68 (89)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GCCEEEEEEEESCSSSSCCEEEEEEESSTH-HHHHHGGGT
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHhcC
Confidence 567889886 3367889999999 765 455555553 33 6899999999653 344555443
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=69.72 E-value=6.9 Score=31.60 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=39.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|++.|+. |.++ .++...++. | +.|++.|.|.+ -..-..|+.
T Consensus 26 ~~lfV~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~~~~~tg~~kg~afV~f~~-~~~A~~Ai~ 85 (109)
T 2rs2_A 26 CKMFIGGLSW---------QTTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 85 (109)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEECCCTTTCCCTTCEEEEESS-HHHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHc--cCCeEEEEEEECCCCCCcCcEEEEEECC-HHHHHHHHH
Confidence 4567889986 3467889999999 8764 555555543 3 78999999975 333444443
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.71 E-value=7.8 Score=30.10 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=39.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-c-ceeeecCC-C-CCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-T-RVQSLWNF-R-GHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~-kv~~l~~~-~-gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
-++.|-|+|. ..+...|++.|+. |.+ . .++.+.++ . .+.|++.|.|.+-- .-..|+.
T Consensus 10 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~ 70 (99)
T 2div_A 10 ASLWMGDLEP---------YMDENFISRAFAT--MGETVMSVKIIRNRLTGIPAGYCFVEFADLA-TAEKCLH 70 (99)
T ss_dssp SEEEECSCCT---------TCCHHHHHHHHHH--TTCCCCEEEEEECSSSCCEEEEEEEECSCHH-HHHHHHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--hCCcceEEEEeecCCCCCcCCEEEEEeCCHH-HHHHHHH
Confidence 3466889886 3467889999999 876 3 66677665 2 36799999997533 3334443
No 97
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.43 E-value=9.1 Score=30.78 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNK 177 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~ 177 (432)
-++.|-|+|. ..+...|++.|+. |.++ .++.+.++. | +.|+|.|.|..
T Consensus 18 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 18 TKIFVGGLPY---------HTTDASLRKYFEG--FGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp SEEEEECCCS---------SCCHHHHHHHHHT--TSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 3466889986 3467889999999 8764 555555543 3 78999999975
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=69.32 E-value=6.8 Score=30.87 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=36.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|.+.|+. |.++ .+....++. | +.|+|.|.|.+.-
T Consensus 24 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 76 (106)
T 1p27_B 24 WILFVTGVHE---------EATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYK 76 (106)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhc--cCCeEEEEEEecCCCCceeeEEEEEECCHH
Confidence 5677889986 3467889999999 8664 555555543 3 6899999998643
No 99
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=69.30 E-value=6.4 Score=31.58 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=35.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+. |.+ ..|+...++ .| +.|+|.|.|..-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 16 FHVFVGDLSP---------EITTEDIKAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 3566889986 3467889999999 865 455666653 34 689999999763
No 100
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.23 E-value=76 Score=29.78 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 047081 257 SNLTNTIEVKNKHLEEMKER 276 (432)
Q Consensus 257 ~~L~~~i~~kn~~l~~lE~k 276 (432)
+.|...+......+++++..
T Consensus 21 ~~l~~~~~~lp~el~~le~~ 40 (256)
T 3na7_A 21 DSLEPLIREKRKDLDKALND 40 (256)
T ss_dssp HHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 33333333333334444333
No 101
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=69.11 E-value=5.9 Score=29.09 Aligned_cols=55 Identities=9% Similarity=0.179 Sum_probs=37.9
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
+.|-|+|. ..+...|++.|+. |.+. .+....++. | +.|++.|.|.+.- .-..|+.
T Consensus 2 l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSP---------DTPEEKIREYFGG--FGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCS---------SCCHHHHHHHHHH--HSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 45778876 3467889999999 7664 444444433 3 7899999998643 4455555
No 102
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=68.88 E-value=6.8 Score=30.66 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=37.7
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCccchHHHHh-hHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNWPGLDNAMA-FEK 190 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~-fe~ 190 (432)
.+.|-|+|. ..+...|++.|+. |.++ .+....+ +.|++.|.|.+.- .-..|+. |+.
T Consensus 2 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~---~~g~afV~f~~~~-~a~~A~~~l~g 59 (101)
T 2hvz_A 2 KVYVGNLGT---------GAGKGELERAFSY--YGPLRTVWIARN---PPGFAFVEFEDPR-DAEDAVRGLDG 59 (101)
T ss_dssp EEEEECCCS---------SCSHHHHHHHHHH--HCCCSEEEEESS---SSSEEEEECSSHH-HHHHHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeC---CCCEEEEEECCHH-HHHHHHHHHCC
Confidence 356788886 3467889999999 7664 4444444 8899999997643 3444544 444
No 103
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.76 E-value=7.1 Score=30.55 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=35.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC--CCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR--GHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--gh~g~avv~F~~~w 179 (432)
..+.|-|+|. ..+...|.+.|+. |.++ .+....++. .+.|++.|.|...-
T Consensus 13 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 65 (102)
T 2cqb_A 13 RVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 65 (102)
T ss_dssp SCEEEESCCS---------SCCHHHHHHHHTT--TSCCCCEECCCCSSSCCCSSEEEECCSSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHhhc--cCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 3466889986 3467889999999 8664 555555433 37899999998643
No 104
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=68.65 E-value=6.4 Score=31.81 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=36.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w 179 (432)
-.+.|-|+|. ..+...|++.|+. |.++ .+....++. | +.|+|.|.|.+.-
T Consensus 27 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 79 (108)
T 2jrs_A 27 MRLYVGSLHF---------NITEDMLRGIFEP--FGRIESIQLMMDSETGRSKGYGFITFSDSE 79 (108)
T ss_dssp EEEEEECCCS---------SCCHHHHHHHHTT--TSCEEEEEEEEETTTTEEEEEEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 4566889986 3478889999999 7664 555555543 3 6899999998643
No 105
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=68.64 E-value=8.2 Score=31.48 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=36.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc-eeeecCC-CC-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR-VQSLWNF-RG-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~-~g-h~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|.+.|+. |.++. |....++ .| +.|+|.|.|...-
T Consensus 23 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 23 WILFVTGVHE---------EATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 4677999986 3467889999999 77644 4444553 34 5899999998653
No 106
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=68.32 E-value=7.8 Score=30.92 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=38.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
-++.|-|+|. ..++. ...+...|++.|+. |.++.-..+-...| +.|++.|.|.+.-. -..|+.
T Consensus 16 ~~l~V~nLp~-~~~~~--~~~t~~~l~~~F~~--~G~v~~v~i~~~~g~~~G~afV~f~~~~~-A~~Ai~ 79 (105)
T 2nlw_A 16 SVIVVDNVPQ-VGPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASPAH-AVDAVK 79 (105)
T ss_dssp SEEEEESCCC-CCTTT--TTHHHHHHHHHHGG--GSCEEEEECCCBTTBSCCEEEEEECSSSH-HHHHHH
T ss_pred CEEEEeCCCc-chhhh--hHHHHHHHHHHHhc--CCCEEEEEeeCCCCCeeeEEEEEECCHHH-HHHHHH
Confidence 3567889985 22111 01145789999999 87754333333444 67999999986543 344443
No 107
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=68.27 E-value=28 Score=27.37 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHH
Q 047081 307 LSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALA 356 (432)
Q Consensus 307 ~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~ 356 (432)
+.+-+-+++++.+|..||.-|.---..|..|+.+|..-....-.+|.-|.
T Consensus 4 ~~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~ 53 (70)
T 3brv_B 4 QGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLM 53 (70)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567789999999999999999999999999999877664444444443
No 108
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.24 E-value=4.8 Score=32.68 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=36.2
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCC-----CCceeEEEEeCCCc
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFR-----GHSGCALVQFNKNW 179 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~-----gh~g~avv~F~~~w 179 (432)
+.|-|+|. ..+...|++.|+. |.++.+..+.... -+.|+|.|.|...-
T Consensus 11 lfVgnLp~---------~~te~~L~~~F~~--~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 11 VFVGGLPP---------DIDEDEITASFRR--FGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63 (114)
T ss_dssp EEEECCCT---------TCCHHHHHHHTTT--TCCCCEECTTSSSSCCCSCTTSEEEECCSSHH
T ss_pred EEEcCCCC---------CCCHHHHHHHHHh--cCCEEEEEeecCCCCCCCCcccEEEEEECCHH
Confidence 55788886 2367889999999 8888766666543 36899999998743
No 109
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=68.24 E-value=1.2e+02 Score=31.73 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=35.9
Q ss_pred ccCCCCCCcchhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH---HHHH
Q 047081 218 RSDDHSLNNIIGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEE---KDRL 294 (432)
Q Consensus 218 radD~~~~~~iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~mee---k~~l 294 (432)
.-+|+...=|-| |.| .++..+..|.-..-|..|+|.|..-.+.....-.-.+.+...|+..+.+ ++..
T Consensus 38 aDeDwGvkCPSG------CrL---qglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~ 108 (491)
T 1m1j_A 38 VDDDWGTKCPSG------CRM---QGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDEN 108 (491)
T ss_dssp CTTSTTTEECCS------TTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCc------cch---hhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhH
Confidence 566776644433 222 2334444444444455555555444444444444444444444444433 3344
Q ss_pred HHHHHHHHHHH
Q 047081 295 VQGYNEEIKKI 305 (432)
Q Consensus 295 ~~~~neEi~km 305 (432)
..+|.++++.-
T Consensus 109 ~~e~S~eLe~r 119 (491)
T 1m1j_A 109 YGHVSTELRRR 119 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=68.21 E-value=4.9 Score=30.75 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC--CCceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR--GHSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--gh~g~avv~F~~~w 179 (432)
.+.|-|+|. ..+...|++.|+. |.+ ..+....++. .+.|++.|.|.+.-
T Consensus 3 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 3 NIYVGNLVY---------SATSEQVKELFSQ--FGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEEECT---------TSSHHHHTTTHHH--HTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEEECCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 356788886 3467888999999 765 4566666553 37899999998765
No 111
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=67.89 E-value=6.9 Score=36.41 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=42.5
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCCccchHHHHhh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~f 188 (432)
++.|-|+|. ..+...|.+.|+. |.+ ..|+...++.|..|+|.|.|.+ -..-..|+.+
T Consensus 43 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~ 100 (292)
T 2ghp_A 43 TVLVKNLPK---------SYNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITK 100 (292)
T ss_dssp EEEEEEECT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTT
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHHh
Confidence 466899986 3467889999999 765 4566677778889999999984 4444555544
No 112
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.86 E-value=5.3 Score=30.58 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=32.8
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.+.|-|+|. ..+...|++.|+. |.++.-..+. ..+.|++.|.|...-
T Consensus 7 ~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~--~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 7 GVFVGRCTG---------DMTEDELREFFSQ--YGDVMDVFIP--KPFRAFAFVTFADDQ 53 (88)
T ss_dssp EEEEESCCS---------SSCHHHHHHHSTT--TSCCCEEECC--SSCCSCCEEECSCHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCeeEEEEe--cCCCCEEEEEECCHH
Confidence 356788886 3467889999999 8764333332 237889999999843
No 113
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=67.71 E-value=9.7 Score=31.31 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=35.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC--CCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR--GHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~--gh~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|++.|+. |.++ .++...++. .+.|++.|.|.+.
T Consensus 64 ~~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 115 (140)
T 2ku7_A 64 RVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELA 115 (140)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEECCCCTTTCCCCSEEEEEESCH
T ss_pred cEEEEEeCCC---------CCCHHHHHHHHHh--cCCEEEEEEeecCCCCCcCcEEEEEECCH
Confidence 4566889986 3467889999999 8764 455555532 3789999999864
No 114
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.62 E-value=4.5 Score=31.73 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=37.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
.++.|-|+|. ..+...|++.|+. |.++ +.+....| +.|++.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~g~v--~~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 71 (101)
T 2fc9_A 16 KTLVLSNLSY---------SATEETLQEVFEK--ATFI--KVPQNQNGKSKGYAFIEFASF-EDAKEALN 71 (101)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHCSS--CSEE--ECCBCSSSCBCSEEEEECSSH-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCEE--EEEECCCCCEeeEEEEEECCH-HHHHHHHH
Confidence 4567889986 2467889998888 7554 55555555 689999999853 33344444
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=67.56 E-value=8.8 Score=31.20 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=42.8
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHHhhHh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
+.++.|-|+|. ..+...|++.|+. |.++ .|..++++ .| +.|++.|.|.+.-. -..|+.|+.
T Consensus 36 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~l~g 99 (124)
T 2jwn_A 36 KRSVYVGNVDY---------GSTAQDLEAHFSS--CGSINRITILCDKFSGHPKGYAYIEFAERNS-VDAAVAMDE 99 (124)
T ss_dssp HTEEEEEEECT---------TCCHHHHHHHHHT--TSCEEEEEEEEECTTSSCEEEEEEEESSHHH-HHHHHTTTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcccEEEEEECCHHH-HHHHHhcCC
Confidence 45677889986 3467889999999 8764 56666653 34 68999999976543 455554443
No 116
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.27 E-value=8.6 Score=30.15 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=39.3
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHh-cCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIR-RGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~-~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|.+.|+. -| ....|....++.| +.|++.|.|.+--. -..|+.
T Consensus 10 ~~l~V~nLp~---------~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~-a~~A~~ 69 (104)
T 2dhg_A 10 YSLFVGDLTP---------DVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELE-QKRALT 69 (104)
T ss_dssp CCEEEECCCT---------TCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHH-HHHHHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHH-HHHHHH
Confidence 3466889886 2367889998886 44 2456677777666 68999999986433 334443
No 117
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=67.19 E-value=3.1 Score=25.99 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=18.1
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.++.+|.||.|+.. +.....|..|-.
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~l~~H~~ 32 (37)
T 1p7a_A 7 TGIKPFQCPDCDRS---FSRSDHLALHRK 32 (37)
T ss_dssp CCSSSBCCTTTCCC---BSSHHHHHHHHG
T ss_pred CCCCCccCCCCCcc---cCcHHHHHHHHH
Confidence 45678999999753 345666777743
No 118
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=67.10 E-value=7.3 Score=29.37 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=31.7
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhc----CCCC---cceeeecCCCCCceeEEEEeCCC
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRR----GLHP---TRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~----GF~p---~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
+..+.|-|+|. ..+...|++.|+.- |+.+ ..|..++-.. ..|+|.|.|.+-
T Consensus 6 ~~~l~V~nLp~---------~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~ 63 (87)
T 2hzc_A 6 ARRLYVGNIPF---------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSV 63 (87)
T ss_dssp GGEEEEESCCT---------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCH
Confidence 35677889986 34678899999993 2211 0222222111 278999999864
No 119
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=67.06 E-value=8.7 Score=31.86 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|.+.|+. |.+. .+....++ .| +.|++.|.|.+.
T Consensus 4 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 54 (167)
T 1fxl_A 4 NLIVNYLPQ---------NMTQEEFRSLFGS--IGEIESCKLVRDKITGQSLGYGFVNYIDP 54 (167)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEcCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCcceeEEEEEECCH
Confidence 467889986 3467889999999 7764 45555554 34 679999999863
No 120
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=67.05 E-value=5.5 Score=33.13 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=41.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc---eeeecCC-CC-CceeEEEEeCCCccchHHHHhhHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR---VQSLWNF-RG-HSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k---v~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
.+.|-|+|. -.+...|++.|+. |.++. |+...++ .| +.||+.|.|... ..-.-...|..
T Consensus 25 ~lfV~nL~~---------~~te~~L~~~F~~--~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 25 TIILRNLNP---------HSTMDSILGALAP--YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp EEEECSCCT---------TCCSHHHHHHHGG--GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 456889886 2357889999999 86653 6777766 34 789999999987 44433344443
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=66.94 E-value=6.5 Score=32.13 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=33.7
Q ss_pred EEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 122 IVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 122 Ii~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
+|-|++. + .+.+.|++.|.. |.|+.-..+.- |+||+.|+|...
T Consensus 11 ~VgNL~~-~--------~te~~L~~lF~q--~G~V~~~~l~~---~kGfaFVey~~~ 53 (89)
T 2wbr_A 11 LLKNLTA-Q--------IDGPTLRTLCMQ--HGPLVSFHPYL---NQGIALCKYTTR 53 (89)
T ss_dssp EEECCCT-T--------CCCHHHHHHHHH--HSCEEEEEEET---TTTEEEEEESSH
T ss_pred EEeCCCc-c--------CCHHHHHHHHHh--hCCEEEEEEcC---CCcEEEEEECCH
Confidence 3788875 2 356889999999 98977766643 789999999874
No 122
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.90 E-value=2.9e+02 Score=35.60 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhh
Q 047081 390 QKIEKEELHNKIIQLEKQLDAKQAL 414 (432)
Q Consensus 390 hkreKe~~~~kil~LEkqLd~kQ~L 414 (432)
..+||+.+.+.+-..++.|+..++|
T Consensus 2054 ~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777766
No 123
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.79 E-value=7.1 Score=30.55 Aligned_cols=47 Identities=21% Similarity=0.014 Sum_probs=35.5
Q ss_pred eEEEeccccccCCCCCccccchhhHH----HHHHhcCCCC-cceeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLK----DELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~----~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
.+.|-|+|. ..+...|+ +.|+. |.+ ..|+...++.+ .|++.|.|.+.
T Consensus 11 ~l~V~nL~~---------~~~~~~l~~~l~~~F~~--~G~v~~v~i~~~~~~-rg~afV~f~~~ 62 (96)
T 2dgx_A 11 DVQVSNIDY---------RLSRKELQQLLQEAFAR--HGKVKSVELSPHTDY-QLKAVVQMENL 62 (96)
T ss_dssp EEEEESCCT---------TSCHHHHHHHHHHHHHH--HSCEEEEEECSCCST-TCCEEEEESSH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHHhccc--cCcEEEEEEEeCCCC-CeEEEEEECCH
Confidence 466889886 23667787 89999 775 55666666667 89999999764
No 124
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=66.66 E-value=49 Score=26.57 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhHHHHH
Q 047081 317 FTEHENFKLQLEAQKKELEFLGVDLQKR 344 (432)
Q Consensus 317 ~~e~ekl~~eLe~k~~eL~~r~~eL~k~ 344 (432)
+.+.+.....|.+++.+|+....+|..+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666655555544
No 125
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.55 E-value=10 Score=29.52 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=35.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
.++.|-|+|. ..+...|++.|+. |.++.-..+. .+ .|+|.|.|.+. ..-..|+.
T Consensus 18 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~~~--~~-~g~afV~f~~~-~~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGP---------NTSLAALAREFDR--FGSIRTIDHV--KG-DSFAYIQYESL-DAAQAACA 71 (97)
T ss_dssp SCEEEECCCS---------SCCHHHHHHHHHT--TSCEEEEEEC--SS-SCCEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEe--CC-CCEEEEEECCH-HHHHHHHH
Confidence 3466889986 3467889999999 8764433332 22 78999999753 33344444
No 126
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=66.10 E-value=7.5 Score=34.98 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=37.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w 179 (432)
-++.|-|+|. ..+...|++.|+. |.+ ..|+......| +.|+|.|.|.+.-
T Consensus 110 ~~l~V~nLp~---------~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPT---------DATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCT---------TCCHHHHHHHHTT--SCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCC---------cCCHHHHHHHHhc--CCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 4677899986 2367889999999 876 44555555555 6899999998743
No 127
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=65.98 E-value=4.3 Score=32.25 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=37.1
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~ 178 (432)
+++|-|+|. -... ..-.+...|++.|+. |.+ ..++...++. | +.|++.|.|.+.
T Consensus 8 ~vfV~nLp~-v~~~--~~~~~~~~L~~~F~~--~G~i~~v~i~~d~~tg~~kG~afV~f~~~ 64 (100)
T 3ns6_A 8 YIVVNGAPV-IPSA--KVPVLKKALTSLFSK--AGKVVNMEFPIDEATGKTKGFLFVECGSM 64 (100)
T ss_dssp EEEEESCCC-CBGG--GHHHHHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEeCCCc-CChH--HHHHHHHHHHHHHHh--cCCEeEEEEEEcCCCCccceEEEEEECCH
Confidence 577889985 1111 112356789999999 775 4566666665 5 789999999864
No 128
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=65.90 E-value=3.1 Score=24.00 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=15.7
Q ss_pred CeeeccCCCCCCccccCcHHHHhhhh
Q 047081 39 ETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
++|.|+.|+. .+.....|..|..
T Consensus 1 ~~~~C~~C~k---~f~~~~~l~~H~~ 23 (29)
T 2m0f_A 1 GPLKCRECGK---QFTTSGNLKRHLR 23 (29)
T ss_dssp CCEECTTTSC---EESCHHHHHHHHH
T ss_pred CCccCCCCCC---ccCChhHHHHHHH
Confidence 4799999974 2345667777743
No 129
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=65.82 E-value=79 Score=28.69 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047081 392 IEKEELHNKIIQLEKQLD 409 (432)
Q Consensus 392 reKe~~~~kil~LEkqLd 409 (432)
-++..+..+|..|||+-.
T Consensus 118 ~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456678889999998643
No 130
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.32 E-value=64 Score=27.47 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=17.8
Q ss_pred HHHHHHHHHhHHhhhHHHHHhhhccc
Q 047081 400 KIIQLEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 400 kil~LEkqLd~kQ~LELEi~qLkG~L 425 (432)
...+.+.=||.|-.|++||.--+.-|
T Consensus 103 ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 103 QNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455556788899999997655444
No 131
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=65.32 E-value=11 Score=28.49 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=39.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
-.+.|-|+|. ..+...|++.|+. |.+ ..++...++. | +.|++.|.|.+.-. -..|+..
T Consensus 12 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-a~~A~~~ 72 (87)
T 3s7r_A 12 GKMFVGGLSW---------DTSKKDLKDYFTK--FGEVVDCTIKMDPNTGRSRGFGFILFKDAAS-VEKVLDQ 72 (87)
T ss_dssp TEEEEECCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSTHH-HHHHHHS
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEeecCCCCccccEEEEEECCHHH-HHHHHHh
Confidence 4566889986 3367889999999 865 4565555543 4 68999999986443 3444443
No 132
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=65.03 E-value=11 Score=31.63 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=38.4
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCcc
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWP 180 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~ 180 (432)
+.++.|-|+|. ..+...|++.|+. |.++ .+....++ .| ..|++.|.|.+.-.
T Consensus 94 ~~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 94 AHKLFIGGLPN---------YLNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TTCEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CCEEEEEcCCC---------cCCHHHHHHHHHh--cCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 56788999986 3367889999999 8764 45555553 34 68999999987543
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.96 E-value=11 Score=29.38 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=36.4
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
++.|-|+|. ..+...|++.|+. |.+..|..+.-. .|++.|.|... ..-..|+.
T Consensus 17 ~l~V~nLp~---------~~t~~~l~~~F~~--~g~g~v~~~~~~---~g~afV~f~~~-~~A~~A~~ 69 (99)
T 2cpd_A 17 ILYVRNLML---------STSEEMIEKEFNN--IKPGAVERVKKI---RDYAFVHFSNR-EDAVEAMK 69 (99)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSTTCEEEEEEC---SSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEEe---CCeEEEEeCCH-HHHHHHHH
Confidence 466889986 3467889999999 866666655443 56999999763 33344444
No 134
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.68 E-value=11 Score=28.94 Aligned_cols=42 Identities=7% Similarity=0.130 Sum_probs=31.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNK 177 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~ 177 (432)
.+.|-|+|. ..+...|++.|+. |.++....+. .|++.|.|.+
T Consensus 10 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~~~-----~g~afV~f~~ 51 (90)
T 2dnq_A 10 KLFIGNLPR---------EATEQEIRSLFEQ--YGKVLECDII-----KNYGFVHIED 51 (90)
T ss_dssp EEEEESCCS---------SCCHHHHHHHHHT--SSCEEEEEEE-----TTEEEEEESS
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEE-----CCEEEEEECC
Confidence 466889886 3467889999999 8765433332 6799999986
No 135
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=64.49 E-value=8.8 Score=32.65 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=40.8
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
+.++.|-|+|. ..+...|.+.|+. |.+ ..|..+.++. | +.|+|.|.|.+.-. -..|+.
T Consensus 39 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~Ai~ 99 (156)
T 1h2v_Z 39 SCTLYVGNLSF---------YTTEEQIYELFSK--SGDIKKIIMGLDKMKKTACGFCFVEYYSRAD-AENAMR 99 (156)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHHH-HHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 45677999986 3467889999999 865 4666666654 3 67999999986433 344444
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=64.16 E-value=9.7 Score=31.79 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=36.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+. |.++ .+....++ .| ++|++.|.|.+.
T Consensus 90 ~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 90 TNLYVTNLPR---------TITDDQLDTIFGK--YGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTS--SSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCEEEeCCCC---------CCCHHHHHHhhhc--CCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 5677899986 3467889999999 7664 45555554 34 679999999863
No 137
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=64.03 E-value=4.8 Score=32.81 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=39.5
Q ss_pred ceEEEeccccccC-CCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCC----CceeEEEEeCCCccc
Q 047081 119 WIGIVVNIPTRRG-QDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRG----HSGCALVQFNKNWPG 181 (432)
Q Consensus 119 wmgIi~N~~~~~~-~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~g----h~g~avv~F~~~w~G 181 (432)
.+++|.|+.+... .+..+...--..|++.|+. |.++ .|++.-+..+ ..|++.|.|...-+.
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k--~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK--YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT--TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHc--cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 3688999876322 3333333445688899999 8764 4555545444 369999999886443
No 138
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.86 E-value=5.4 Score=32.35 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=37.2
Q ss_pred ceEEEeccccccC--CCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCcc
Q 047081 119 WIGIVVNIPTRRG--QDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWP 180 (432)
Q Consensus 119 wmgIi~N~~~~~~--~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~ 180 (432)
.+++|.|+..... .|..+.......|++.|+. |.++.-..++.. ...|++.|.|...-.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~--~G~v~~v~i~~~-~~~G~afV~f~~~~~ 76 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK--FGQIRKLLLFDR-HPDGVASVSFRDPEE 76 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG--TSCCSEEEEETT-CTTCEEEEECSCHHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc--cCCEeEEEEecC-CCCEEEEEEECCHHH
Confidence 5688899854111 1222333345788999999 776544444433 378999999986543
No 139
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.70 E-value=5.7 Score=31.25 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=36.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-C-CCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-R-GHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~-gh~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |.++ .|....++ . .+.|++.|.|.+.-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (103)
T 2cq0_A 16 ATIRVTNLSE---------DTRETDLQELFRP--FGSISRIYLAKDKTTGQSKGFAFISFHRRE 68 (103)
T ss_dssp EEEEEESCCT---------TCCHHHHHTTSTT--TCCEEEEEEEECSSSCSEEEEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEeecCCCCceeeEEEEEECCHH
Confidence 4566889986 3467889999998 7664 55555554 2 37899999998643
No 140
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.68 E-value=9.1 Score=29.91 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=36.0
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCC-CC-CceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|++.|+. |.+ ..++..+++ .| +.|++.|.|.+.
T Consensus 10 ~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 10 SVFVGNIPY---------EATEEQLKDIFSE--VGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp CEEEESCCT---------TSCHHHHHHHHHT--TSCCSEEEEEEETTTTEEEEEEEEECSCH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHh--cCCeeEEEEEeCCCCCccceEEEEEECCH
Confidence 467889886 3467889999999 765 466666664 34 689999999864
No 141
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=63.56 E-value=8.4 Score=32.29 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=38.5
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC--CCceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR--GHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
++.|-|+|. ..+...|++.|+. |.+ ..|..++++. -..|++.|.|...- .-..|+.
T Consensus 48 ~l~V~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~~G~afV~F~~~~-~A~~Ai~ 106 (129)
T 2kxn_B 48 CLGVFGLSL---------YTTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENVD-DAKEAKE 106 (129)
T ss_dssp CBCEETCTT---------SCCHHHHHHHHTT--TSCEEEEEEECCSSSSCCCCEEEEEESCHH-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH-HHHHHHH
Confidence 355889986 3467889999999 875 4566666543 37899999997643 3344443
No 142
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=63.53 E-value=9.6 Score=31.95 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=36.5
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCC----CceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRG----HSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~g----h~g~avv~F~~~w 179 (432)
.+.|-|+|. ..+...|.+.|+. |.++ .++.+.++.+ +.|++.|.|.+.-
T Consensus 5 ~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~ 58 (175)
T 3nmr_A 5 KMFVGQVPR---------TWSEKDLRELFEQ--YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK 58 (175)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEEECSSSSCEEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEecCCCCCCCcceEEEEEECCHH
Confidence 356889886 3467889999999 8664 5566666554 6899999998753
No 143
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=63.23 E-value=8.8 Score=35.67 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=37.8
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCC-CceeEEEEeCCCccchHHHHh
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
+.++.|-|+|. ..+...|.+.|+.-|+....+.......| +.|++.|.|.+.- .-..|+.
T Consensus 117 ~~~l~v~nlp~---------~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~-~a~~A~~ 177 (292)
T 2ghp_A 117 ECTLWMTNFPP---------SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE-DARYCVE 177 (292)
T ss_dssp SCEEEEECCCT---------TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH-HHHHHHH
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 35677889886 34678899999994444566666665555 7899999997643 3334444
No 144
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.16 E-value=9.5 Score=28.72 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=37.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
.+.|-|+|. ..+...|++.|+. |.++ .+....++. | +.|++.|.|.+.- .-..|++
T Consensus 7 ~l~v~nlp~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQP---------GTTDQDLVKLCQP--YGKIVSTKAILDKTTNKCKGYGFVDFDSPS-AAQKAVT 65 (85)
T ss_dssp EEEEESCCT---------TCCHHHHHTTSTT--TSCEEEEEEECCSSSCSCCSEEEEEESCHH-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCcEEEEEECCHH-HHHHHHH
Confidence 567889886 3467889998988 7664 455555532 3 6899999998643 3344444
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=62.85 E-value=4.6 Score=31.31 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=32.3
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|++.|+. |..+ ..+.....+.|++.|.|.+.
T Consensus 18 ~l~V~nL~~---------~~t~~~l~~~F~~--~g~v--~~~~~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 18 TLLAKNLSF---------NITEDELKEVFED--ALEI--RLVSQDGKSKGIAYIEFKSE 63 (96)
T ss_dssp EEEEESCCS---------SCCHHHHHHHHCS--EEEE--CCEEETTEEEEEEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhh--CCcE--EEeCCCCCcceEEEEEECCH
Confidence 466889886 3467889999988 7544 44422233789999999863
No 146
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=62.66 E-value=4.3 Score=23.41 Aligned_cols=22 Identities=23% Similarity=0.794 Sum_probs=15.4
Q ss_pred CeeeccCCCCCCccccCcHHHHhhh
Q 047081 39 ETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
.+|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQR---SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSCE---ESSHHHHHHHH
T ss_pred cCccCCCcChh---hCCHHHHHHHH
Confidence 57999999742 34566677774
No 147
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.50 E-value=10 Score=30.15 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=33.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w 179 (432)
-++.|-|+|. ..+...|++.|+. |.++ .|....+ .|+|.|.|...-
T Consensus 26 ~~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~~----~g~afV~f~~~~ 72 (109)
T 1x4g_A 26 CTVYCGGIAS---------GLTDQLMRQTFSP--FGQIMEIRVFPE----KGYSFVRFSTHE 72 (109)
T ss_dssp CEEEEECCSS---------CCCHHHHHHHHHH--HSCEEEEEEETT----TTEEEEEESSHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeCC----CCEEEEEECCHH
Confidence 4567889986 3478899999999 7654 4444433 789999998744
No 148
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=61.64 E-value=13 Score=33.49 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=42.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC---cceeeecCCCCCceeEEEEeCCCccchHHHHhhHhhhhhcc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP---TRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADH 196 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p---~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~ 196 (432)
++.|-|+|. ..+...|++.|+. |.+ ..|+.+....+.+|+++|.|.+ ..-=..|+.-=+.+...+
T Consensus 125 ~l~v~NLp~---------~~t~~~L~~~F~~--~G~v~~~~v~~~~~~~~~~g~gfV~f~~-~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 125 VLHFFNAPL---------EVTEENFFEICDE--LGVKRPTSVKVFSGKSERSSSGLLEWDS-KSDALETLGFLNHYQMKN 192 (205)
T ss_dssp EEEEEEECT---------TCCHHHHHHHHHH--HTCCCCSEEEECSCCSSSSEEEEEECSS-HHHHHHHHHHHTTCEECC
T ss_pred eEEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEEEcCCCCCceEEEEEeCC-HHHHHHHHHHhCCCCccC
Confidence 466789986 3467889999999 665 4566655554567999999985 444444554334444333
No 149
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=61.58 E-value=14 Score=28.28 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=37.1
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCC---CcceeeecCC-CC-CceeEEEEeCCCccchHHHH
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLH---PTRVQSLWNF-RG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~---p~kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
++.|-|+|. ..+...|++.|+. |. ...++...++ .| +.|++.|.|.+ -..-..|+
T Consensus 3 ~l~V~nL~~---------~~t~~~l~~~F~~--~G~~~v~~v~i~~~~~~g~~kG~afV~f~~-~~~a~~Ai 62 (90)
T 3p5t_L 3 ALYIGNLTW---------WTTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGS-EASSKKLM 62 (90)
T ss_dssp -CEEESCCT---------TCCHHHHHHHHHT--TTCCCCCCEEEEECTTTCCEEEEEEECC-C-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCCceEEEEEEecCCCCccCcEEEEEECC-HHHHHHHH
Confidence 456788875 2367889999999 65 4566666664 34 68999999975 34444555
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=61.56 E-value=12 Score=31.63 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=33.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w 179 (432)
-.+.|-|+|. ..+...|++.|+. |.++ .++... ++.|++.|.|.+.-
T Consensus 74 ~~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~---~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 74 CKVYVGNLGN---------NGNKTELERAFGY--YGPLRSVWVAR---NPPGFAFVEFEDPR 121 (150)
T ss_dssp CEEEEESCCS---------CCSCHHHHHHHHH--HSCEEEEEECS---SSCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--hCCEEEEEEee---CCCcEEEEEECCHH
Confidence 4566889986 3467889999999 7654 333333 37889999997643
No 151
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=61.41 E-value=9.3 Score=30.75 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=35.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC--CCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR--GHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--gh~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |.+ ..++...++. .+.|++.|.|.+.-
T Consensus 41 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 93 (118)
T 2khc_A 41 CNLFIYHLPQ---------EFTDTDLASTFLP--FGNVISAKVFIDKQTSLSKCFGFVSFDNPD 93 (118)
T ss_dssp EEEEEECSCT---------TCCHHHHHHHTTT--SCEEEEEEECCCSSSSCCCCEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCCcCcEEEEEECCHH
Confidence 4566889986 3367889999999 765 4455555532 37899999998654
No 152
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.36 E-value=13 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=31.3
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc-eeeecCCCCCceeEEEEeCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR-VQSLWNFRGHSGCALVQFNK 177 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~gh~g~avv~F~~ 177 (432)
++.|-|+|. ..+...|++.|+. |.++. +.... ..|++.|.|.+
T Consensus 14 ~l~V~~l~~---------~~t~~~l~~~f~~--~G~i~~~~~~~----~kg~afV~f~~ 57 (85)
T 2ytc_A 14 TLYVGGLGD---------TITETDLRNHFYQ--FGEIRTITVVQ----RQQCAFIQFAT 57 (85)
T ss_dssp CEEEECCTT---------TSCHHHHHHHHHT--TSCEEEEEEEG----GGTEEEEEESS
T ss_pred EEEEcCCCC---------CCCHHHHHHHHHh--CCCEeEEEEEC----CCCEEEEEECC
Confidence 466889986 3477889999999 87643 33333 36899999985
No 153
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.24 E-value=97 Score=31.18 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047081 295 VQGYNEEIKKIQLSAQYHFQRIF 317 (432)
Q Consensus 295 ~~~~neEi~kmq~~a~~~~~~I~ 317 (432)
...|..|+.-+-+.-|+++-++.
T Consensus 323 ~~eF~~Eve~L~~i~HrNLV~L~ 345 (487)
T 3oja_A 323 SETERLECERENQARQREIDALK 345 (487)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhHH
Confidence 34566677766666666665554
No 154
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.08 E-value=4.5 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=16.8
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
...+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elt_A 6 SGKPYKCPQCSYA---SAIKANLNVHLR 30 (36)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHHH
T ss_pred CCCCCCCCCCCcc---cCCHHHHHHHHH
Confidence 4568999999742 335566777743
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.06 E-value=13 Score=30.01 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=33.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |.++.-..+- -..|+|.|.|...-
T Consensus 11 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~---~~~g~afV~f~~~~ 57 (111)
T 1whx_A 11 TVILAKNLPA---------GTLAAEIQETFSR--FGSLGRVLLP---EGGITAIVEFLEPL 57 (111)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECC---SSSSCEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEe---CCCCEEEEEeCCHH
Confidence 3567889986 3478889999999 8775433332 25679999998654
No 156
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.88 E-value=4.8 Score=24.93 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=17.1
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+..+|.|+.|+.. +..-..|..|..
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2els_A 6 SGKIFTCEYCNKV---FKFKHSLQAHLR 30 (36)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCEECCCCCce---eCCHHHHHHHHH
Confidence 4578999999742 335566777754
No 157
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.75 E-value=12 Score=30.04 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=40.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
-.+.|-|+|. ..+...|++.|+. |.+ ..|+...++. | +.|++.|.|.. -..-..|+..
T Consensus 28 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~ 88 (116)
T 1x4b_A 28 RKLFIGGLSF---------ETTEESLRNYYEQ--WGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMAA 88 (116)
T ss_dssp TEEEEECCTT---------CCCHHHHHHHHTS--SCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHTS
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHHh
Confidence 4567889986 2367889999999 865 4666666543 3 78999999985 3344445544
No 158
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.53 E-value=4.8 Score=24.75 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=17.9
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
....+|.|+.|+. .+.....|..|-.
T Consensus 5 ~~~~~~~C~~C~k---~f~~~~~l~~H~~ 30 (36)
T 2elr_A 5 SSGKTHLCDMCGK---KFKSKGTLKSHKL 30 (36)
T ss_dssp CCCSSCBCTTTCC---BCSSHHHHHHHHH
T ss_pred CCCCCeecCcCCC---CcCchHHHHHHHH
Confidence 3567899999974 2445666777743
No 159
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=60.32 E-value=12 Score=31.71 Aligned_cols=57 Identities=19% Similarity=0.134 Sum_probs=39.9
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHH
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
+..+.|-|+|. ..+...|++.|+. |.++ .++...++ .| +.|++.|.|.+. ..-..|+
T Consensus 70 ~~~l~v~nl~~---------~~~~~~l~~~F~~--~G~v~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~ 129 (158)
T 2kn4_A 70 MTSLKVDNLTY---------RTSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHDK-RDAEDAM 129 (158)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEECCCCSSCTTSCCEEEEEESBH-HHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeecCCCCccceEEEEEECCH-HHHHHHH
Confidence 45677889986 3467889999999 7764 55556553 23 889999999863 3334444
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=60.30 E-value=9 Score=34.27 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=38.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.+.|-|++. ..+...|++.|+. |.+ ..++.+.+..+..|++.|.|.+.-
T Consensus 105 ~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 105 NIFIKNLDK---------SIDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred cceECCccc---------ccHHHHHHHHHhh--cCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 456889886 2367889999999 865 566777777778999999997753
No 161
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=60.22 E-value=12 Score=32.54 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=33.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+.-||....++.+.. ..|++.|.|.+.
T Consensus 121 ~~l~v~nl~~---------~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPP---------SVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCT---------TCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCH
Confidence 4566788885 34678899999995544555655443 368999999763
No 162
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=60.15 E-value=14 Score=28.80 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=33.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |.++.-..+. -+.|++.|.|.+.-
T Consensus 28 ~~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~~~---~~~g~afV~f~~~~ 74 (101)
T 2la4_A 28 TTAYIGNIPH---------FATEADLIPLFQN--FGFILDFKHY---PEKGCCFIKYDTHE 74 (101)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TSCCSEEEEE---TTTTEEEEECSSHH
T ss_pred CEEEEcCCCc---------ccCHHHHHHHHHh--CCCEEEEEEe---cCCCEEEEEECCHH
Confidence 3566889986 3467889999999 8764433332 35789999998644
No 163
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.15 E-value=6.7 Score=30.67 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=36.4
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCC-C-CCceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNF-R-GHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~-~-gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
++.|-|+|. ..+...|++.|+. | +.+..+... . .+.|++.|.|.+. ..-..|+.
T Consensus 17 ~l~V~nLp~---------~~t~~~l~~~F~~--~--~~~~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~ 72 (102)
T 2fc8_A 17 TLFVKGLSE---------DTTEETLKESFDG--S--VRARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 72 (102)
T ss_dssp SEEEECCCT---------TCCHHHHHHTSTT--C--SEEEEEECSSSCSEEEEEEEECSSH-HHHHHHHH
T ss_pred EEEEeCCCC---------ccCHHHHHHHhcC--C--eEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 456889986 2367889998886 7 466666654 3 3679999999853 33344443
No 164
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.14 E-value=74 Score=26.44 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=27.2
Q ss_pred hhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 047081 368 SLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQ 412 (432)
Q Consensus 368 ~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ 412 (432)
.|-.+=.++ |. +.|-.-.++...+..|.-+|+.||..+.
T Consensus 58 eLTasLFeE--AN----~MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 58 DLTASLFDE--AN----NMVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555 43 3444557888888999999999998875
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=60.08 E-value=13 Score=31.87 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=38.5
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCcc
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWP 180 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~ 180 (432)
+..+.|-|+|. ..+...|++.|+. |.++ .+....++ .| +.|++.|.|.+.-.
T Consensus 114 ~~~l~v~nl~~---------~~~~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPN---------YLNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHHT--BSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 46677889886 3367889999999 8764 56666664 34 58999999987544
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=59.95 E-value=14 Score=30.62 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=36.0
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|++.|+. |.+. .++...+. .| +.|++.|.|.+.
T Consensus 89 ~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 89 ANLYVSGLPK---------TMTQKELEQLFSQ--YGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CcEEECCCCC---------cCCHHHHHHHHHh--cCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 4567889986 3367889999999 8764 45555554 34 589999999874
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=59.91 E-value=17 Score=30.27 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=39.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC--CCCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF--RGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|.+.|+. |.++ .++...++ ..++|++.|.|.+. ..-..|+.
T Consensus 88 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 147 (167)
T 2cjk_A 88 GKIFVGGIGP---------DVRPKEFEEFFSQ--WGTIIDAQLMLDKDTGQSRGFGFVTYDSA-DAVDRVCQ 147 (167)
T ss_dssp EEEEEEEECT---------TCCHHHHHHHHHT--TSCCSEEECCCSSSSSTTSEEEEEEESSH-HHHHHHHH
T ss_pred CeEEECCCCC---------CCCHHHHHHHHHh--CccEEEEEEEEcCCCCccceEEEEEECCH-HHHHHHHh
Confidence 4677889986 3467889999999 8664 56666554 23789999999763 33334443
No 168
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.78 E-value=5.2 Score=24.94 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=17.0
Q ss_pred ecCCeeeccCCCCCCccccCc-HHHHhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLY-KDLLQHA 63 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~-~~LlqHA 63 (432)
....+|.|+.|+.. +..- ..|..|-
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~~L~~H~ 30 (37)
T 2elp_A 5 SSGRAMKCPYCDFY---FMKNGSDLQRHI 30 (37)
T ss_dssp CCCCCEECSSSSCE---ECSSCHHHHHHH
T ss_pred CCCCCeECCCCChh---hccCHHHHHHHH
Confidence 35678999999742 3344 6777774
No 169
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.68 E-value=15 Score=28.91 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=33.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC--cceeee-cCCC--CCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP--TRVQSL-WNFR--GHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p--~kv~~l-~~~~--gh~g~avv~F~~~ 178 (432)
.+.|-|+|. ..+...|++.|+. |.+ ..+... .... -+.|+|.|.|.+.
T Consensus 10 ~l~V~nLp~---------~~t~~~l~~~f~~--~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 10 RLFIGGIPK---------MKKREEILEEIAK--VTEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp EEEEECCCT---------TSCHHHHHHHHHH--HSTTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHH--hcCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 466889886 3467889999999 754 344443 2222 3789999999863
No 170
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=59.53 E-value=10 Score=30.24 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=36.1
Q ss_pred ceEEEeccccccCCCCCccc-cchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHH
Q 047081 119 WIGIVVNIPTRRGQDGRSVG-ESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G-~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~ 186 (432)
-.+.|-|+|. . .+...|++.|+. |.++.-..+ +.|++.|.|...-. -..|+
T Consensus 28 ~~l~V~nl~~---------~~~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~~-A~~A~ 79 (110)
T 1wf1_A 28 SRVFIGNLNT---------ALVKKSDVETIFSK--YGRVAGCSV-----HKGYAFVQYSNERH-ARAAV 79 (110)
T ss_dssp SEEEECSCCC---------SSCCHHHHHHHHGG--GSCCSEEEE-----ETTEEEEECSSSHH-HHHHH
T ss_pred cEEEEeCCCc---------ccCCHHHHHHHHHh--CCCeEEEEE-----eCCEEEEEECCHHH-HHHHH
Confidence 3677889986 2 367889999999 876554444 67899999976543 33444
No 171
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=58.82 E-value=5.5 Score=22.97 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=16.1
Q ss_pred CeeeccCCCCCCccccCcHHHHhhhh
Q 047081 39 ETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+|.|+.|+.. +.....|..|-.
T Consensus 2 k~~~C~~C~~~---f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGRS---FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCCE---ESCHHHHHHHHH
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 57999999853 335666777754
No 172
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=58.19 E-value=5.2 Score=30.98 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=32.4
Q ss_pred eEEEeccccccCCCCCccccchhhHH----HHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLK----DELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~----~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|+ +.|+. |.++....+.....+.|++.|.|.+.
T Consensus 10 ~l~V~nLp~---------~~~~~~l~~~l~~~f~~--~G~i~~v~i~~~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 10 TIYINNLNE---------KIKKDELKKSLHAIFSR--FGQILDILVSRSLKMRGQAFVIFKEV 61 (97)
T ss_dssp EEEEESCCT---------TSCHHHHHHHHHHHHGG--GSCEEEEECCHHHHHTTCEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHHHHh--CCCEEEEEEEcCCCcCcEEEEEeCCH
Confidence 567889886 34667777 88999 77654433332223668999999854
No 173
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=57.88 E-value=12 Score=31.03 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=38.6
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
.+.|-|++. ..+...|++.|+. |.+ ..|+...++. | +.|+|.|.|.+.-. -..|+.
T Consensus 44 ~l~V~nLp~---------~~~~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 102 (139)
T 1u6f_A 44 NLMVNYIPT---------TVDEVQLRQLFER--YGPIESVKIVCDRETRQSRGYGFVKFQSGSS-AQQAIA 102 (139)
T ss_dssp EEEEESCST---------TCCHHHHHHHHHH--HSCEEEEEEEEETTTTEEEEEEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCHHH-HHHHHH
Confidence 456889886 3467889999999 766 4566666554 3 68999999986433 333443
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=57.86 E-value=14 Score=31.61 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=36.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+. |.++ .+..+.++ .| +.|++.|.|.+.
T Consensus 105 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKE---------DTEEHHLRDYFEQ--YGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCC---------CCCHHHHHHHHhc--CCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 5678899986 2467889999998 8764 45566654 33 689999999873
No 175
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.86 E-value=6 Score=24.04 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
++.+|.|+.|+.. +..-..|..|-.
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 28 (35)
T 2elx_A 4 GSSGYVCALCLKK---FVSSIRLRSHIR 28 (35)
T ss_dssp CCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCeECCCCcch---hCCHHHHHHHHH
Confidence 4678999999753 335566777744
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=56.85 E-value=15 Score=31.99 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=39.0
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
.++.|-|+|. ..+...|.+.|+. |.++ .++.+..+ .| +.|++.|.|.+. ..-..|+.
T Consensus 29 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 88 (216)
T 2qfj_A 29 SRVYVGSIYY---------ELGEDTIRQAFAP--FGPIKSIDMSWDSVTMKHKGFAFVEYEVP-EAAQLALE 88 (216)
T ss_dssp TEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEECCC-CC-CCCSEEEEEESSH-HHHHHHHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--CCCEEEEEEeecCCCCccCceEEEEeCCH-HHHHHHHH
Confidence 4677999996 3467889999999 8764 45555554 33 789999999753 33344444
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=56.77 E-value=16 Score=30.14 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=36.0
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCC-CC-CceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNF-RG-HSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~g-h~g~avv~F~~~ 178 (432)
..+.|-|+|. ..+...|.+.|+. |.+ ..+....++ .| +.|++.|.|.+.
T Consensus 88 ~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 88 FNLFVGDLNV---------NVDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred ceEEECCCCC---------CCCHHHHHHHHhc--cCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 4577889986 3467889999998 876 455555553 23 678999999864
No 178
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=56.74 E-value=13 Score=29.97 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=31.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
-.+.|-|+|. ..+...|++.|+. |.++.-..+. .|++.|.|.+.
T Consensus 32 ~~l~V~nLp~---------~~t~~~L~~~F~~--~G~i~~v~i~-----kg~afV~f~~~ 75 (108)
T 2jvo_A 32 TRLFVRPFPL---------DVQESELNEIFGP--FGPMKEVKIL-----NGFAFVEFEEA 75 (108)
T ss_dssp SEEEECSSCT---------TCCHHHHHHHHTT--TSCCCEEEEE-----TTEEEEECSSH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEECCH
Confidence 4556889886 3467889999999 8765433333 78999999863
No 179
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.60 E-value=5.9 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elq_A 6 SGKPFKCSLCEYA---TRSKSNLKAHMN 30 (36)
T ss_dssp CCCSEECSSSSCE---ESCHHHHHHHHH
T ss_pred CCCCccCCCCCch---hCCHHHHHHHHH
Confidence 4578999999742 445566777743
No 180
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=56.58 E-value=6.2 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=18.1
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+..+|.|+.|+. .+.....|..|-..
T Consensus 4 ~~k~~~C~~C~k---~f~~~~~l~~H~~~ 29 (35)
T 1srk_A 4 GKRPFVCRICLS---AFTTKANCARHLKV 29 (35)
T ss_dssp CCSCEECSSSCC---EESSHHHHHHHHGG
T ss_pred CCcCeeCCCCCc---ccCCHHHHHHHHHH
Confidence 467899999974 24456677788543
No 181
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.32 E-value=18 Score=27.85 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=35.3
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCccee--eecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQ--SLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~--~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|++.|+. |.++.-. ...+ ..+|.+.|.|.+.- .-..|+.
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~~~~i~~~--~~~~~afV~f~~~~-~a~~Ai~ 72 (96)
T 2e44_A 16 RKLQIRNIPP---------HLQWEVLDSLLVQ--YGVVESCEQVNTD--SETAVVNVTYSSKD-QARQALD 72 (96)
T ss_dssp CCEEEEEECS---------SSCHHHHHHHHHH--HSCEEEEEEECCS--SSSEEEEEEESSHH-HHHHHHH
T ss_pred CEEEEEcCCC---------CCCHHHHHHHHHh--cCCeEEEEEeecC--CCCCEEEEEECCHH-HHHHHHH
Confidence 4577889986 3467889999999 8765443 3333 34455999997543 3334443
No 182
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=56.20 E-value=11 Score=31.65 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=35.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC--CCCceeEEEEeCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF--RGHSGCALVQFNK 177 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~gh~g~avv~F~~ 177 (432)
.++.|-|+|. ..+...|++.|+. |.++ .|....++ .-+.|++.|.|.+
T Consensus 48 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 48 TSLKVDNLTY---------RTSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp CCEEEECCCS---------SCHHHHHHHHHGG--GSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCccceEEEEEECC
Confidence 4577889986 3478889999999 7654 55555554 2378999999985
No 183
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=56.14 E-value=1e+02 Score=26.93 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=9.2
Q ss_pred HhhhHHHHHhhhccccc
Q 047081 411 KQALELEIERLRGTSKC 427 (432)
Q Consensus 411 kQ~LELEi~qLkG~L~V 427 (432)
.+.++.+++.+...|.+
T Consensus 267 ~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 267 YKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34455566666555544
No 184
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=55.77 E-value=4.8 Score=31.60 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=39.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCC--CCceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFR--GHSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~--gh~g~avv~F~~~w~Gf~~A~~f 188 (432)
..+.|-|+|. ..+...|++.|+. |.++....+.... -+.|++.|.|.+ -..-..|+.+
T Consensus 18 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~~~~~~~g~~~g~afV~f~~-~~~a~~A~~l 77 (101)
T 1fj7_A 18 FNLFIGNLNP---------NKSVAELKVAISE--LFAKNDLAVVDVRTGTNRKFGYVDFES-AEDLEKALEL 77 (101)
T ss_dssp EEEEEECCCT---------TSCHHHHHHHHHH--HHHHHTCCCCEEEEETTTTEEEEEESS-HHHHHHHHHG
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCcceEEEecCCCCCcCcEEEEEECC-HHHHHHHHhc
Confidence 4677889986 3467889999999 7765553444322 367999999975 3445556653
No 185
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.76 E-value=22 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=30.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNK 177 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~ 177 (432)
..+.|-|+|. ..+...|++.|+. |.++.-..+. .+++.|.|.+
T Consensus 11 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~v~~~-----~~~afV~f~~ 53 (92)
T 2dgt_A 11 TKLHVGNISP---------TCTNQELRAKFEE--YGPVIECDIV-----KDYAFVHMER 53 (92)
T ss_dssp EEEEEESCCS---------SCCHHHHHHHHHT--TSCCCEEEEC-----SSEEEEEESC
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEE-----CCEEEEEECC
Confidence 3466889986 3467889999999 7764333332 3499999986
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=55.69 E-value=14 Score=30.72 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=38.7
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
++.|-|+|. ..+...|.+.|+. |.++ .++...++ .| +.|++.|.|.+. ..-..|+.
T Consensus 5 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 63 (168)
T 1b7f_A 5 NLIVNYLPQ---------DMTDRELYALFRA--IGPINTCRIMRDYKTGYSYGYAFVDFTSE-MDSQRAIK 63 (168)
T ss_dssp EEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEeCCCCccceEEEEEECCH-HHHHHHHH
Confidence 467889986 3467889999999 8775 45555443 34 679999999853 33444443
No 187
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=55.49 E-value=6.5 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.467 Sum_probs=16.0
Q ss_pred CeeeccCCCCCCccccCcHHHHhhhh
Q 047081 39 ETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+|.|+.|+. .+.....|..|-.
T Consensus 2 k~~~C~~C~k---~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGK---RFSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCC---EESCHHHHHHHHT
T ss_pred cCccCCCCCc---ccCCHHHHHHHHH
Confidence 4799999974 2345667778843
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=54.91 E-value=13 Score=37.81 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=39.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCCCccchHHHH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~ 186 (432)
-++.|-|++. ..+...|.+.|+. |.++ .|.++++. .| +.|||.|.|...-. -..|+
T Consensus 103 ~~lfV~nL~~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNY---------DTTESKLRREFEV--YGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--cCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 3677889986 3467889999999 8764 56666653 34 68999999976543 34444
No 189
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=54.29 E-value=6.9 Score=22.47 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=14.6
Q ss_pred eeeccCCCCCCccccCcHHHHhhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+|.|+.|+.. +..-..|..|-.
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~~ 23 (29)
T 1ard_A 2 SFVCEVCTRA---FARQEHLKRHYR 23 (29)
T ss_dssp CCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CeECCCCCcc---cCCHHHHHHHHH
Confidence 6899999753 334556777743
No 190
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.24 E-value=8.8 Score=30.67 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=32.7
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-----ceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-----RVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-----kv~~l~~~~gh~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|.+.|+. |.++ .+... ...+.|+|.|.|...
T Consensus 26 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~v~~~~~~~~~~--~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSP---------RVTERDLVSLFAR--FQEKKGPPIQFRMM--TGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHTHH--HHHSSSSCCEEEEE--CSSSCSEEEEECSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCccceEEEEEcC--CCccceEEEEEECCH
Confidence 4566889986 3467889999999 7654 22222 334679999999863
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=54.24 E-value=12 Score=31.73 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=34.0
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
+.++.|.|+|. ..+...|++.|+. |.. |+.+....-..|++.|.|.+.
T Consensus 99 ~~~l~v~nlp~---------~~t~~~l~~~F~~--~g~--v~~~~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 99 ARTLLAKNLSF---------NITEDELKEVFED--ALE--IRLVSQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp GGEEEEESCCS---------SCCHHHHHHHCTT--CSE--EEEECSSSSCCSEEEEECSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCe--EEEecCCCCCceEEEEEECCH
Confidence 35678999986 2367889998888 754 444422334789999999863
No 192
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.23 E-value=14 Score=28.70 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=32.5
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
..+.|-|+|. ..+...|++.|+. |.++....+-. ..|++.|.|...-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~~~~---~kg~afV~f~~~~ 62 (99)
T 2cpj_A 16 SRLFVGNLPP---------DITEEEMRKLFEK--YGKAGEVFIHK---DKGFGFIRLETRT 62 (99)
T ss_dssp TEEEEESCCT---------TCCHHHHHHHTST--TCCCSEEEEET---TTTEEEEECSSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhh--cCCeEEEEEec---CCCEEEEEECCHH
Confidence 3567889986 2467889999999 76643333321 2689999998643
No 193
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.72 E-value=7.5 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=17.3
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
...+|.|+.|+. .+..-..|..|-.
T Consensus 6 ~~k~~~C~~C~k---~f~~~~~l~~H~~ 30 (36)
T 2elv_A 6 SGLLYDCHICER---KFKNELDRDRHML 30 (36)
T ss_dssp CCCCEECSSSCC---EESSHHHHHHHHT
T ss_pred CCCCeECCCCCC---ccCCHHHHHHHHH
Confidence 457899999974 2345566777854
No 194
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=53.26 E-value=7.3 Score=22.44 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=15.0
Q ss_pred eeeccCCCCCCccccCcHHHHhhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+|.|+.|+.. +..-..|..|-.
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPKR---FMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSCE---ESCSHHHHHHHT
T ss_pred CccCCCCCch---hCCHHHHHHHHH
Confidence 6999999743 345566777743
No 195
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=52.89 E-value=5.2 Score=23.24 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=15.1
Q ss_pred CeeeccCCCCCCccccCcHHHHhhh
Q 047081 39 ETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
.+|.|+.|+. .+..-..|..|-
T Consensus 2 k~~~C~~C~k---~f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRA---GCPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTE---EESCHHHHHHHH
T ss_pred cCcCCCCCCc---ccCCHHHHHHHH
Confidence 5799999974 234556677774
No 196
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.74 E-value=13 Score=28.61 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=32.7
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.+.|-|+|. ..+...|++.|+. |.+ +....+. +.|++.|.|.+.-
T Consensus 10 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~vv~~~~~~----~~g~afV~f~~~~ 55 (93)
T 2cqh_A 10 KLYIGNLSP---------AVTADDLRQLFGD--RKLPLAGQVLL----KSGYAFVDYPDQN 55 (93)
T ss_dssp CEEEECCCT---------TCCHHHHHHHHHH--TTCCCSSCEEE----ETTEEEECCSCHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCceEEEEEc----CCCEEEEEECCHH
Confidence 356889886 3467889999999 776 5544442 4689999998643
No 197
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.74 E-value=1.8e+02 Score=30.40 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEK-DRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEA 329 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek-~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~ 329 (432)
..++.+.++.+.+....+..++.+-.|++.+.-|++-.+.- +++.... .-|+-+|. .++.+.-++.+|...+..
T Consensus 83 ~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~~IrvLq~----~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 83 TSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-NRIKALQN----SIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 56788888999999999999999999999999999877663 3333333 55555554 444555677788888887
Q ss_pred HHHHHHH
Q 047081 330 QKKELEF 336 (432)
Q Consensus 330 k~~eL~~ 336 (432)
+++--..
T Consensus 158 q~~~Cr~ 164 (491)
T 1m1j_A 158 KIRACKG 164 (491)
T ss_dssp HHHTTTT
T ss_pred HHHHhcc
Confidence 7764333
No 198
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.41 E-value=18 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=30.3
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
++.|-|+|. ..+...|++.|+. |.++.-..+. .|++.|.|...
T Consensus 11 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~~~~~-----~~~afV~f~~~ 53 (90)
T 2dnp_A 11 KIFVGNVSA---------ACTSQELRSLFER--RGRVIECDVV-----KDYAFVHMEKE 53 (90)
T ss_dssp CEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEEEC-----SSCEEEEESCH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHc--CCCEEEEEEE-----CCEEEEEECCH
Confidence 466889886 3467889999999 7764333332 34999999853
No 199
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.58 E-value=8.2 Score=24.71 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=18.0
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
-.++.+|.|+.|+.. +.....|..|-
T Consensus 6 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 31 (42)
T 2en2_A 6 SGGEKPYKCETCGAR---FVQVAHLRAHV 31 (42)
T ss_dssp CCSSCSEECTTTCCE---ESSHHHHHHHT
T ss_pred cCCCCCEeCCCcChh---hCCHHHHHHHH
Confidence 346778999999753 34556677774
No 200
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=51.25 E-value=7.7 Score=22.07 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=13.7
Q ss_pred eeeccCCCCCCccccCcHHHHhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+|.|+.|+.. +-....|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK---FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC---CCTTTHHHHHH
T ss_pred CCcCCCCCcc---cCCHHHHHHHH
Confidence 6899999853 23445566663
No 201
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.20 E-value=6.2 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=17.6
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (37)
T 2elo_A 5 SSGRSYSCPVCEKS---FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCCCEETTTTEE---CSSHHHHHHHHH
T ss_pred CCCCCcCCCCCCCc---cCCHHHHHHHHH
Confidence 35678999999742 335566777744
No 202
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=50.89 E-value=1.1e+02 Score=25.78 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=39.9
Q ss_pred hcHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 047081 347 KNENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA 413 (432)
Q Consensus 347 ~~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~ 413 (432)
+=..-|+||.+..+......++++..++.+..+.- ..+-+||-+|.++|.....
T Consensus 50 QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~V-------------salq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 50 QLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAV-------------STLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 33446778888877777788888888888744432 3467899999999987655
No 203
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=50.85 E-value=8.2 Score=22.13 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=15.3
Q ss_pred eeeccCCCCCCccccCcHHHHhhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+|.|+.|+.. +.....|..|..
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFR---SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCC---CSCSHHHHHHHH
T ss_pred CccCCCCCCc---cCCHHHHHHHHH
Confidence 5899999753 345667777754
No 204
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.65 E-value=8.8 Score=24.63 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=18.9
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2eos_A 6 SGGEKPYPCEICGTR---FRHLQTLKSHLR 32 (42)
T ss_dssp CSSSCCBCCSSSCCC---BSSHHHHHHHTT
T ss_pred cCCCCCEECCCCCCc---cCCHHHHHHHHH
Confidence 345678999999753 445667778854
No 205
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=50.58 E-value=22 Score=30.85 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=39.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCC---CcceeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLH---PTRVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~---p~kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
-.+.|-|++. ..+...|++.|+. |. ...|+...++ .| ..||+.|.|.+. ..-..|+.
T Consensus 56 ~~lfVgnLp~---------~~te~~L~~~F~~--~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~-~~A~~Ai~ 117 (156)
T 3n9u_C 56 AAVYVGSFSW---------WTTDQQLIQVIRS--IGVYDVVELKFAENRANGQSKGYAEVVVASE-NSVHKLLE 117 (156)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHH--TTCCCEEEEEEEECTTTCCEEEEEEEEESCH-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--HCCccEEEEEEEecCCCCccceEEEEEECCH-HHHHHHHH
Confidence 4677889886 3467889999999 76 4556666654 34 689999999753 33344443
No 206
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=50.26 E-value=8.7 Score=22.27 Aligned_cols=20 Identities=20% Similarity=0.492 Sum_probs=14.7
Q ss_pred eeeccCCCCCCccccCcHHHHhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
+|.|+.|+.. +..-..|..|
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRA---FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCB---CSSSHHHHHH
T ss_pred CcCCcccCcc---cCChHHHHHH
Confidence 6899999742 4456678888
No 207
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=50.04 E-value=20 Score=33.07 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=41.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCC---CcceeeecCC-CC-CceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLH---PTRVQSLWNF-RG-HSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~---p~kv~~l~~~-~g-h~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|++. ..+...|++.|+. |. ...|+++.++ .| ..||+.|.|.+.-. -..|+.
T Consensus 69 ~~lfVgnL~~---------~~te~~L~~~F~~--~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 69 IALYIGNLTW---------WTTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--HCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 3567889886 2367889999999 65 5677777764 34 68999999987543 455554
No 208
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=49.90 E-value=20 Score=32.32 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=33.8
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+.-||....|..+.. ..|++.|.|.+.
T Consensus 152 ~~l~V~nlp~---------~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~ 199 (229)
T 2adc_A 152 ATLHLSNIPP---------SVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 199 (229)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSH
T ss_pred CEEEEeCCCc---------cCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCH
Confidence 6778889986 33678899999994433445555432 367999999773
No 209
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.84 E-value=8.3 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=16.2
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
+..+|.|+.|+.. +..-..|..|
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~L~~H 28 (37)
T 2elm_A 6 SGHLYYCSQCHYS---SITKNCLKRH 28 (37)
T ss_dssp SSCEEECSSSSCE---EECHHHHHHH
T ss_pred CCcCeECCCCCcc---cCCHHHHHHH
Confidence 4678999999742 3345567777
No 210
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=49.70 E-value=19 Score=28.27 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=31.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
++.|-|+|. ..+...|++.|+. |.++....+. .|++.|.|...-
T Consensus 13 ~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~~~-----~~~afV~f~~~~ 56 (103)
T 2dgu_A 13 VLFVRNLAN---------TVTEEILEKAFSQ--FGKLERVKKL-----KDYAFIHFDERD 56 (103)
T ss_dssp CEEEECCCT---------TCCHHHHHHHHHH--HSCEEEEEEC-----SSCEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEeCCHH
Confidence 466889986 3467889999999 8764433332 459999998643
No 211
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.65 E-value=9.3 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=18.8
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.++.+|.|+.|+.. +.....|..|...
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (41)
T 2ept_A 6 SGQRVYECQECGKS---FRQKGSLTLHERI 32 (41)
T ss_dssp CCCCCEECSSSCCE---ESSHHHHHHHGGG
T ss_pred CCCCCeECCCCCCC---cCCHHHHHHHHHH
Confidence 35678999999742 4456678888543
No 212
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=49.36 E-value=18 Score=30.06 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=51.9
Q ss_pred eEEEeccccccC-CCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHhhhhhccCC
Q 047081 120 IGIVVNIPTRRG-QDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHG 198 (432)
Q Consensus 120 mgIi~N~~~~~~-~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~~G 198 (432)
+++|.|+.+... .|..+..+=-..|++.|+. |.++.-..+. .....|++.|.|...- +|.+--+.+. |
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k--fG~V~~v~i~-~~~~~G~~fV~f~~~e----~A~~Ai~~ln----G 77 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK--HGGVIHIYVD-KNSAQGNVYVKCPSIA----AAIAAVNALH----G 77 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT--TTCCSEEEEC-TTCTTCCEEEECSSHH----HHHHHHHHHT----T
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhc--cCCEEEEEEe-cCCCcEEEEEEECCHH----HHHHHHHHhC----C
Confidence 688999987333 3555555556678888998 8765433332 2234799999998743 2322222221 2
Q ss_pred hhhhhccCCCCCcceeeecccCCCCC
Q 047081 199 KKDWNDGNQVKSGLYGWVARSDDHSL 224 (432)
Q Consensus 199 r~dW~~~~~~~~~LYGw~AradD~~~ 224 (432)
| | -.|+.|+--.+..++|..
T Consensus 78 ~--~----f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 78 R--W----FAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp C--E----ETTEECEEEEECHHHHHH
T ss_pred C--E----ECCEEEEEEEEcHHHHHH
Confidence 2 1 135677777777776643
No 213
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.18 E-value=31 Score=26.50 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=36.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~f 188 (432)
.+.|-|+|. ..+...|++.|+. |.++.-.+.....|. ++.|.|.+ -..-..|+.+
T Consensus 10 ~l~V~nl~~---------~~t~~~l~~~F~~--~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~l 64 (94)
T 2e5g_A 10 SVFVSGFPR---------GVDSAQLSEYFLA--FGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLSQ 64 (94)
T ss_dssp EEEEECCCT---------TCCHHHHHHHGGG--TSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHTC
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHhc
Confidence 355788885 2367889999999 877654333333344 99999976 5555666653
No 214
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.15 E-value=1.2e+02 Score=26.57 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=29.9
Q ss_pred hhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 047081 368 SLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQAL 414 (432)
Q Consensus 368 ~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~L 414 (432)
.|-.+=.++ |. +.|-+-+++...+..|.-+|+.||..+..|
T Consensus 78 ~LTasLFeE--AN----~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 78 DLTASLFDE--AN----NLVADARMEKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHHHHHHHH--HH----HHHHHTTHHHHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 44 444556888899999999999999999764
No 215
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=49.03 E-value=19 Score=29.96 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=36.4
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCccee---eec-----CCCCCceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQ---SLW-----NFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~---~l~-----~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
++.|-|+|. ..+...|++.|+. |.++... +.+ ...-+.|++.|.|.+.- .-..|+.
T Consensus 47 ~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 110 (143)
T 3egn_A 47 RIYVKNLAK---------HVQEKDLKYIFGR--YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK-AAAKALK 110 (143)
T ss_dssp EEEEEEECT---------TCCHHHHHHHHGG--GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHH-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCcccccccceeeEEeccCCCcccEEEEEeCCHH-HHHHHHH
Confidence 467889986 3467889999999 7765431 111 22347899999997543 3344444
No 216
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=49.01 E-value=27 Score=28.30 Aligned_cols=86 Identities=6% Similarity=-0.010 Sum_probs=50.6
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCC--C-CceeEEEEeCCCccchHHHHhhHhhhhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFR--G-HSGCALVQFNKNWPGLDNAMAFEKSFEA 194 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~--g-h~g~avv~F~~~w~Gf~~A~~fe~~Fe~ 194 (432)
.+++|.|+.+... +.-.....|++.|+. |.+ ..|.+...+. | ..|++.|.|.+.-..-.-...|+..+
T Consensus 9 ~~l~l~Nm~~~~~----l~dd~~~dl~~~f~~--~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~-- 80 (105)
T 2pe8_A 9 KVVLLRNMVGAGE----VDEDLEVETKEECEK--YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY-- 80 (105)
T ss_dssp SEEEEESSSCSCC----C---CHHHHHHHGGG--GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE--
T ss_pred CEEEEEcCCChHH----hhHHHHHHHHHHHHh--cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE--
Confidence 3688889875211 212346889999999 876 4555555442 2 57999999987643333222333221
Q ss_pred ccCChhhhhccCCCCCcceeeecccCCCCC
Q 047081 195 DHHGKKDWNDGNQVKSGLYGWVARSDDHSL 224 (432)
Q Consensus 195 ~~~Gr~dW~~~~~~~~~LYGw~AradD~~~ 224 (432)
-.++.|+--.|..++|..
T Consensus 81 ------------~~Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 81 ------------FGGRVVKACFYNLDKFRV 98 (105)
T ss_dssp ------------ETTEECEEEECCHHHHHT
T ss_pred ------------ECCcEEEEEEcCHHHhhh
Confidence 124577777777766644
No 217
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=48.97 E-value=23 Score=30.35 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=40.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCccchHHHHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNWPGLDNAMAF 188 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w~Gf~~A~~f 188 (432)
-.+.|-|+|. ..+...|.+.|+. |.++ .+....++. | +.|++.|.|.+ -..-..|+..
T Consensus 14 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~ 74 (196)
T 1l3k_A 14 RKLFIGGLSF---------ETTDESLRSHFEQ--WGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAMNA 74 (196)
T ss_dssp GEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEEcCCCCCccceEEEEeCC-HHHHHHHHhc
Confidence 3567889996 3467889999999 7664 556666543 4 68999999975 3334444443
No 218
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.75 E-value=25 Score=28.43 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHH
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~ 186 (432)
.++.|-|+|. ..+...|++.|+. |.++.-..+- . ..|+|.|.|.. ...-..|+
T Consensus 16 ~~l~V~nLp~---------~~te~~L~~~F~~--fG~V~~v~i~--~-~kg~aFVef~~-~~~A~~Ai 68 (104)
T 1wex_A 16 PVVHVRGLCE---------SVVEADLVEALEK--FGTICYVMMM--P-FKRQALVEFEN-IDSAKECV 68 (104)
T ss_dssp SEEEEESCCS---------SCCHHHHHHHHTT--TSCEEEEEEE--T-TTTEEEEEESS-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEE--C-CCCEEEEEECC-HHHHHHHH
Confidence 4677889986 3467889999999 8764433222 1 26899999986 33333444
No 219
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=48.68 E-value=9.9 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.++.+|.|+.|+.. +..-..|..|-.
T Consensus 5 ~H~~~~~~~C~~C~k~---f~~~~~l~~H~~ 32 (42)
T 2epc_A 5 SSGGETPYLCGQCGKS---FTQRGSLAVHQR 32 (42)
T ss_dssp CCCSSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCCCCeECCCCCcc---cCCHHHHHHHhh
Confidence 3346778999999743 335566777754
No 220
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=48.67 E-value=9.3 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=17.8
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
++.+|.|+.|+.. +..-..|..|-..
T Consensus 3 ~~k~~~C~~C~k~---f~~~~~L~~H~~~ 28 (39)
T 1njq_A 3 PPRSYTCSFCKRE---FRSAQALGGHMNV 28 (39)
T ss_dssp CSSSEECTTTCCE---ESSHHHHHHHHHT
T ss_pred CCCceECCCCCcc---cCCHHHHHHHHHH
Confidence 4578999999743 3455667778543
No 221
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.01 E-value=9.4 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+-..+.+|.|+.|+.. +.....|..|...
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2yu5_A 6 SGAGENPFKCSKCDRV---FTQRNYLVQHERT 34 (44)
T ss_dssp CCSCCCSEECSSSSCE---ESSSHHHHHHHHH
T ss_pred ccCCCCCeECCCCCch---hCCHHHHHHHhHh
Confidence 3346778999999752 4456677788543
No 222
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.77 E-value=18 Score=29.07 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=36.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHH---HHHHhcCCCCc-ceeeecCCC-----CCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLK---DELIRRGLHPT-RVQSLWNFR-----GHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~---~~l~~~GF~p~-kv~~l~~~~-----gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
.++.|-|+|. . .+...|. +.|+. |.++ .+....+.. .+.|++.|.|...-. -..|+.
T Consensus 16 ~~l~V~nLp~-~--------~~~~~l~~~~~~F~~--~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~-A~~Ai~ 81 (111)
T 2cpi_A 16 NLVFVVGLSQ-R--------LADPEVLKRPEYFGK--FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED-ALRAIQ 81 (111)
T ss_dssp SCEEEEEECT-T--------TCCHHHHHSTTTTTT--TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHH-HHHHHH
T ss_pred CEEEEECCCC-C--------CCHHHHHHHHHHhhc--cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHH-HHHHHH
Confidence 4567889986 2 2456777 88888 8764 444444332 356899999986433 334443
No 223
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=47.68 E-value=29 Score=27.17 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=31.4
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.+.|-|++. . ..+...|++.|+. |.++....+ ..|++.|.|.+.-
T Consensus 24 ~l~V~nLp~-~-------~~t~~~L~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~ 68 (97)
T 2xnq_A 24 RLFIGNLPL-K-------NVSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDNPQ 68 (97)
T ss_dssp EEEEESCCS-S-------CCCHHHHHHHHGG--GSCEEEEEE-----CSSEEEEEESSHH
T ss_pred EEEEeCCCc-c-------cCCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECCHH
Confidence 355788872 0 2367889999999 876544433 3789999998743
No 224
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=47.28 E-value=28 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=24.2
Q ss_pred HHHHH-HhcCCCC-cceeeecCCCC-CceeEEEEeCCCccc
Q 047081 144 LKDEL-IRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNWPG 181 (432)
Q Consensus 144 L~~~l-~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w~G 181 (432)
|++.| +. |.+ ..|.+..+..| ..|++.|.|.+.-..
T Consensus 43 l~~~f~~~--~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 43 VFTEMEEK--YGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp HHHHHHHH--TCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred HHHHhhcc--CCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 34445 88 776 45666655555 489999999875543
No 225
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.16 E-value=9.7 Score=24.26 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=19.0
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.+..+|.|+.|+.. +.....|..|-..
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 33 (42)
T 2ytb_A 7 GGEKPYRCDQCGKA---FSQKGSLIVHIRV 33 (42)
T ss_dssp CSCCSBCCTTTTCC---BSSHHHHHTTGGG
T ss_pred CCCCCeeCCCccch---hCCHHHHHHHHHH
Confidence 45678999999753 4456678888543
No 226
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.06 E-value=1.4e+02 Score=25.84 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047081 388 EDQKIEKEELHNKIIQLEKQLD 409 (432)
Q Consensus 388 e~hkreKe~~~~kil~LEkqLd 409 (432)
++-+++..++..+|.+||..|.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666654
No 227
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=46.75 E-value=10 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=18.6
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.++.+|.|+.|+.. +.....|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (42)
T 2el5_A 6 SGENPYECSECGKA---FNRKDQLISHQRT 32 (42)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHGG
T ss_pred CCCCCccCCCcChh---hCCHHHHHHHHHh
Confidence 35678999999753 4456667778543
No 228
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.60 E-value=10 Score=24.70 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=19.5
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|+.|+. .+..-..|..|-..
T Consensus 7 H~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2yts_A 7 GTGEKPYICNECGK---SFIQKSHLNRHRRI 34 (46)
T ss_dssp CCSCCSEECSSSCC---EESSHHHHHHHGGG
T ss_pred CCCCcCEECCCCCh---hhCChHHHHHHHHh
Confidence 34677899999974 24456677788543
No 229
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.55 E-value=10 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-....+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emi_A 7 GTGERHYECSECGKA---FIQKSTLSMHQR 33 (46)
T ss_dssp CSSCCCEECSSSCCE---ESSHHHHHHHHG
T ss_pred cCCCCCCCCCCCCcc---cCCHHHHHHHHh
Confidence 345778999999753 345566777744
No 230
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.52 E-value=10 Score=24.51 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2emb_A 6 SGHTRKRYECSKCQAT---FNLRKHLIQHQK 33 (44)
T ss_dssp CCCCCSSEECTTTCCE---ESCHHHHHHHGG
T ss_pred ccCCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 3456778999999753 345666777754
No 231
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=46.40 E-value=25 Score=32.28 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=34.0
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.++.|-|++. ..+...|++.|+. |.++.-..+. .+..|++.|.|.+.-
T Consensus 208 ~~l~v~nl~~---------~~~~~~l~~~F~~--~G~i~~v~~~--~~~~g~afV~f~~~~ 255 (282)
T 3pgw_A 208 HILFLTNLPE---------ETNELMLSMLFNQ--FPGFKEVRLV--PGRHDIAFVEFDNEV 255 (282)
T ss_pred CEEEEeCCCC---------cCCHHHHHHHHHh--cCCeEEEEEe--cCCCcEEEEEeCCHH
Confidence 4577888875 3367889999999 8765433333 344689999998753
No 232
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.24 E-value=10 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2eof_A 8 TGEKPYECNECQKA---FNTKSNLMVHQR 33 (44)
T ss_dssp SCCCSEECTTTCCE---ESCHHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHhHHHHHHH
Confidence 45678999999742 445666777743
No 233
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.17 E-value=11 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enf_A 6 SGTGEKPYKCNECGKV---FTQNSHLVRHRG 33 (46)
T ss_dssp CCCCCCSCBCSSSCCB---CSSHHHHHHHHT
T ss_pred CCCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3346788999999753 445666777854
No 234
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.16 E-value=11 Score=24.53 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=18.6
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-..+.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~h~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2eou_A 6 SGAAKTTSECQECGKI---FRHSSLLIEHQA 33 (44)
T ss_dssp SCSSSCCCCCTTTCCC---CSSHHHHHHHHH
T ss_pred CCCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 4456788999999753 334556777743
No 235
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.06 E-value=11 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=18.1
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eow_A 7 GTGEKPYKCNECGKA---FRARSSLAIHQA 33 (46)
T ss_dssp SCCCCCEECTTSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCeeccccCCh---hcCHHHHHHHHH
Confidence 346778999999742 335566767743
No 236
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.87 E-value=8.4 Score=27.98 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=16.0
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+-..+.+|.|++|+.. +.....|..|-
T Consensus 8 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 34 (72)
T 1x6e_A 8 IHSGEKPYGCVECGKA---FSRSSILVQHQ 34 (72)
T ss_dssp TTTTCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred ccCCCCCccCCCCCCc---cCCHHHHHHHH
Confidence 3345677888888642 33455566664
No 237
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.85 E-value=11 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=19.4
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|++|+.. +.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eq1_A 7 GTGEKPYKCNECGKA---FRAHSNLTTHQVI 34 (46)
T ss_dssp CCCSCCCCCTTTTCC---CSSHHHHHHHHTT
T ss_pred cCCCCCeECCcCChh---hCCHHHHHHHHHH
Confidence 346778999999743 4456677788543
No 238
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.63 E-value=11 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (42)
T 2yte_A 6 SGEKPYSCAECKET---FSDNNRLVQHQK 31 (42)
T ss_dssp CSCCSCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 45678999999753 345566777754
No 239
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.59 E-value=11 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=18.8
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
....+|.|+.|+. .+.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2ytf_A 8 TGEKPFECSECQK---AFNTKSNLIVHQRT 34 (46)
T ss_dssp CCCCSEECSSSCC---EESSHHHHHHHHHT
T ss_pred CCCCCcCCCCCCc---ccCCHHHHHHHHHH
Confidence 4567899999974 24456667777543
No 240
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.54 E-value=8.8 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=20.4
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+-.+..+|.|+.|+. .+.....|..|-..
T Consensus 6 ~h~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2ysp_A 6 SGTGEKPYKCEKCGK---GYNSKFNLDMHQKV 34 (46)
T ss_dssp CCSSCCSEEETTTTE---EESCHHHHHHHHTT
T ss_pred CCCCCCCeECCCCCC---ccCCHHHHHHHHHh
Confidence 445678999999974 34456678888543
No 241
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.41 E-value=11 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=18.6
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.++.+|.|+.|+. .+..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2ep3_A 8 TGEKPYRCAECGK---AFTDRSNLFTHQK 33 (46)
T ss_dssp SCCCSEECSSSCC---EESSHHHHHHHHT
T ss_pred CCCCCeECCCCCc---hhCCHHHHHHHHH
Confidence 4567899999974 3445667778854
No 242
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.41 E-value=1.7e+02 Score=30.54 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=44.1
Q ss_pred hhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 228 IGEHLRKNRDLKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQL 307 (432)
Q Consensus 228 iG~~LrK~gdLKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~ 307 (432)
|-++|.|+ .--|....+....+|..++|.=.....+++.|..+|+.. ++....++.+.+.|..+|..++.
T Consensus 82 lad~L~ky------e~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~----q~~~~~n~~~~~~s~~mle~~~~ 151 (461)
T 3ghg_B 82 LQEALLQQ------ERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKR----QKQVKDNENVVNEYSSELEKHQL 151 (461)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH----HHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhc------ccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc----cCCCCcchhHHHHHHHHHHHHHH
Confidence 66677665 333455555556667777777667777777777766654 34455556666667666665554
Q ss_pred H
Q 047081 308 S 308 (432)
Q Consensus 308 ~ 308 (432)
.
T Consensus 152 ~ 152 (461)
T 3ghg_B 152 Y 152 (461)
T ss_dssp H
T ss_pred H
Confidence 4
No 243
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.26 E-value=11 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (44)
T 2epv_A 6 SGSGEKPYECNECGKA---FIWKSLLIVHER 33 (44)
T ss_dssp CCCCCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred ccCCCcCeECCCCCcc---cCchHHHHHHHh
Confidence 3356778999999742 445667777754
No 244
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.19 E-value=14 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=18.6
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.++.+|.|+.|+.. +.....|..|-.
T Consensus 4 ~h~~~k~~~C~~C~k~---f~~~~~l~~H~~ 31 (66)
T 2drp_A 4 TKEGEHTYRCKVCSRV---YTHISNFCRHYV 31 (66)
T ss_dssp EEEETTEEECTTTCCE---ESSHHHHHHHHH
T ss_pred ccCCCcceECCCCcch---hCCHHHHHHHHH
Confidence 3456789999999743 335566777743
No 245
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.89 E-value=26 Score=28.87 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=33.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
+++.|-|+|. ..+...|++.|+. |.+ ..|+.+.+ .|++.|.|...
T Consensus 17 ~~LfV~nLp~---------~vte~dL~~lF~~--fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 17 RVIHIRKLPI---------DVTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CEEEECSCCT---------TSCHHHHHHHHHH--HCCEEEEEEETT----TTEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEcC----CCEEEEEECCH
Confidence 5567889886 3467889999999 876 34554432 68999999863
No 246
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.89 E-value=13 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.6
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2elz_A 6 SGSVEKPYKCEDCGKG---YNRRLNLDMHQR 33 (46)
T ss_dssp CCCCCSSCBCSSSCCB---CSSHHHHHHHGG
T ss_pred CCCCCCCeeCcccCch---hCCHHHHHHHHH
Confidence 4456789999999753 445666777754
No 247
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.88 E-value=13 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+-....+|.|+.|+.. +..-..|..|-..
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2enh_A 6 SGTGEKPYECDVCRKA---FSHHASLTQHQRV 34 (46)
T ss_dssp CCCCSSSCBCTTTCCB---CSSSHHHHHHGGG
T ss_pred CcCCCCCcCCCCcCch---hCCHHHHHHHHHH
Confidence 3456778999999753 4456677788543
No 248
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=44.85 E-value=94 Score=27.63 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=50.5
Q ss_pred HhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchh----hHhHHHHhhhhhHHHHHHHHHHHHHHH
Q 047081 321 ENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSL----QLATLEQQKADDNVRKLAEDQKIEKEE 396 (432)
Q Consensus 321 ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l----~lA~~EQ~kade~vlkL~e~hkreKe~ 396 (432)
+++..+|.+....++.-|.+|+- +-+++..|..+....-..- +++.+-+ .=..|+.+
T Consensus 28 e~l~~~l~~~i~q~d~elqQLef-------q~kr~~~e~~~q~~~~~~p~~~~qi~~iq~------------q~~~ek~~ 88 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQ-------EGQTVVDQVRRQSANPLDPRVQEQVANIQQ------------QVAGKRSE 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCTTCHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccCCCCChhHHHHHHHHHH------------HHHHHHHH
Confidence 45566777777777776666664 2234444444421110000 1122211 12356667
Q ss_pred HHHHHHHHHHHHhHHhhhHHHHHhhhcccc
Q 047081 397 LHNKIIQLEKQLDAKQALELEIERLRGTSK 426 (432)
Q Consensus 397 ~~~kil~LEkqLd~kQ~LELEi~qLkG~L~ 426 (432)
.+.++-+|..||.+-+.|+|.=+=..|+++
T Consensus 89 r~e~k~~l~~ql~qv~~L~lGsEv~qg~vE 118 (150)
T 4dci_A 89 LEEQKRNLLQQQAQVRELEMDQIVEQGQLE 118 (150)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcCEEeeceee
Confidence 788888999999999999987665556554
No 249
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=44.82 E-value=12 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=19.7
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+-.+..+|.|+.|+.. +.....|..|-..
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2em9_A 6 SGTGEKPYNCKECGKS---FRWASCLLKHQRV 34 (46)
T ss_dssp SCCCCCSEECSSSCCE---ESSHHHHHHHGGG
T ss_pred CCCCCcCeECCccccc---cCChHHHHHHHHH
Confidence 3346788999999742 4456677788543
No 250
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.72 E-value=11 Score=24.76 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=19.6
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-....+|.|+.|+. .+.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2eon_A 6 SGTGEKPYKCQVCGK---AFRVSSHLVQHHS 33 (46)
T ss_dssp SCSSCCSCBCSSSCC---BCSSHHHHHHHTT
T ss_pred CCCCCcccCCCCCCc---ccCcHHHHHHHHH
Confidence 334678899999974 2445667888854
No 251
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.59 E-value=12 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=17.3
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
..+.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2en3_A 8 TGEKPFQCKECGMN---FSWSCSLFKHL 32 (46)
T ss_dssp CCCCSEECSSSCCE---ESSSHHHHHHH
T ss_pred CCCCCeeCcccChh---hCCHHHHHHHH
Confidence 45678999999753 34556676773
No 252
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.50 E-value=12 Score=24.51 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.4
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-....+|.|+.|+. .+.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k---~F~~~~~L~~H~~ 33 (46)
T 2ytp_A 6 SGTGERHYECSECGK---AFARKSTLIMHQR 33 (46)
T ss_dssp SSCCCCCEECSSSCC---EESSHHHHHHHHT
T ss_pred CcCCCCCeECCcCCc---ccCCHHHHHHHHH
Confidence 334678899999974 2445667778854
No 253
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=44.47 E-value=23 Score=32.57 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=38.2
Q ss_pred cceEEEeccccccCCCCCcccc-chhhHHHHHHhcCCCC-cceeeecCCCC-CceeEEEEeCCCc
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGE-SGSKLKDELIRRGLHP-TRVQSLWNFRG-HSGCALVQFNKNW 179 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~-s~~~L~~~l~~~GF~p-~kv~~l~~~~g-h~g~avv~F~~~w 179 (432)
+.++.|-|+|. .. +...|++.|+. |.+ ..+....++.| ..|++.|.|.+.-
T Consensus 184 ~~~l~v~nlp~---------~~~~~~~l~~~f~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 184 SRCLCVDRLPP---------GFNDVDALCRALSA--VHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CSEEEEECCCT---------TCCCHHHHHHHTCS--SSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ccEEEEecCCc---------ccCCHHHHHHHhhC--CCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 35677889986 21 45789999998 775 46777777777 5899999998653
No 254
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.46 E-value=12 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2en9_A 6 SGAGKKLFKCNECKKT---FTQSSSLTVHQR 33 (46)
T ss_dssp SCCSSCCCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCCCCEECCccCcc---cCCHHHHHHHHH
Confidence 3456788999999753 345566777743
No 255
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.43 E-value=13 Score=24.36 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em8_A 6 SGSGEKPYKCVECGKG---YKRRLDLDFHQR 33 (46)
T ss_dssp CCCSCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCCeECcccCch---hCCHHHHHHHHH
Confidence 4456789999999743 335566777743
No 256
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.43 E-value=11 Score=24.59 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=18.3
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-....+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2em3_A 7 GTGEKPYECKVCSKA---FTQKAHLAQHQK 33 (46)
T ss_dssp CSSCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 346778999999742 345566777743
No 257
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=44.10 E-value=32 Score=28.55 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=35.6
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCC-CC-CceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNF-RG-HSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~-~g-h~g~avv~F~~~w 179 (432)
.+.|-|+|. ..+...|++.|+. |.+ ..++...++ .| +.|++.|.|.+.-
T Consensus 5 ~l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 5 KMFIGGLNW---------DTTEDNLREYFGK--YGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp EEEECSCCT---------TCCHHHHHHHHTT--TCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 567889886 3467889999999 765 445555553 23 7899999998653
No 258
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=44.08 E-value=13 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=18.6
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ely_A 6 SGTGEKPFKCVECGKG---FSRRSALNVHHK 33 (46)
T ss_dssp CCCCCCSBCCSSSCCC---BSSTTHHHHHHH
T ss_pred CCCCCCCcccCccCcc---cCCHHHHHHHHH
Confidence 4456788999999853 334555666643
No 259
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.02 E-value=37 Score=26.79 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhccc
Q 047081 381 DNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 381 e~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L 425 (432)
+.+++.-.+.=++|++. |-+||++|++| +-+|++|+..|
T Consensus 25 q~~L~~K~eELr~kd~~---I~eLEk~L~ek---d~eI~~LqseL 63 (72)
T 3nmd_A 25 QYALQEKIEELRQRDAL---IDELELELDQK---DELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHH
No 260
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=43.89 E-value=17 Score=27.67 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=34.3
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
.+.|-|+|. ..+...|++.|+. |....++.. -..|++.|.|.+. ..-..|+.
T Consensus 7 ~l~V~nLp~---------~~t~~~l~~~F~~--~~v~~~~i~----~~~g~afV~f~~~-~~a~~Ai~ 58 (88)
T 1wg1_A 7 GILVKNLPQ---------DSNCQEVHDLLKD--YDLKYCYVD----RNKRTAFVTLLNG-EQAQNAIQ 58 (88)
T ss_dssp CEEEESCCS---------SCCHHHHHHHTCS--SCCCCEEEE----GGGTEEEECCSCH-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhh--CCeEEEEEe----CCCcEEEEEECCH-HHHHHHHH
Confidence 466888886 3467889999998 833344331 5778999999753 33344443
No 261
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.73 E-value=13 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=19.2
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yrj_A 6 SGTGEKPYRCGECGKA---FAQKANLTQHQR 33 (46)
T ss_dssp CCCCCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 3346788999999743 445666777854
No 262
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=43.70 E-value=12 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=14.4
Q ss_pred eeeccCCCCCCccccCcHHHHhhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+|.|+.|+.. +..-..|..|-.
T Consensus 1 ~~~C~~C~k~---f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCERS---FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCCB---CSSHHHHHHHGG
T ss_pred CccCCCCCCc---CCCHHHHHHHHH
Confidence 4889999742 335566777753
No 263
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.68 E-value=13 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-....+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yto_A 7 GTGEKPYKCSDCGKA---FTRKSGLHIHQQ 33 (46)
T ss_dssp CCSCCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCCCEECcccCCc---cCCHhHHHHHHH
Confidence 345778999999743 345566777743
No 264
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.63 E-value=13 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|+.|+. .+.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k---~F~~~~~L~~H~~~ 34 (46)
T 2epw_A 7 GTGEKPCKCTECGK---AFCWKSQLIMHQRT 34 (46)
T ss_dssp CCCCCSEECSSSCC---EESSSHHHHHHHHH
T ss_pred CCCCCCeeCCCCCC---ccCCHHHHHHHHHH
Confidence 34567899999974 34466777777543
No 265
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=49.51 E-value=4.9 Score=32.49 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=34.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc---------eeeecCCC-C-CceeEEEEeCCCcc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR---------VQSLWNFR-G-HSGCALVQFNKNWP 180 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k---------v~~l~~~~-g-h~g~avv~F~~~w~ 180 (432)
.+.|-|+|. ..+...|++.|+. |.++. +....++. | ..|+|.|.|.+.-.
T Consensus 9 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~ 69 (116)
T 2lcw_A 9 TIFVQGLGE---------NVTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 69 (116)
Confidence 355778875 2356678899999 77765 55555533 3 67999999986443
No 266
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.49 E-value=1.4e+02 Score=26.91 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=8.7
Q ss_pred hhHHHHHHhhcHHHHHHHHHHH
Q 047081 338 GVDLQKREAKNENDRKALAEEI 359 (432)
Q Consensus 338 ~~eL~k~~~~~~~er~kl~~e~ 359 (432)
.+++.++.++-..+|-+...++
T Consensus 119 ~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 119 AKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444443
No 267
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.38 E-value=11 Score=24.15 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.4
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2en7_A 8 TGMKPYVCNECGKA---FRSKSYLIIHTR 33 (44)
T ss_dssp SSSSSSCCTTTCCC---CSSHHHHHHHHT
T ss_pred CCCcCeECCCCCCc---cCCHHHHHHHhh
Confidence 45678999999753 445666777854
No 268
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=43.19 E-value=11 Score=25.68 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=12.8
Q ss_pred CCeeeccCCCCCCccccCcHHHHhhh
Q 047081 38 DETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 38 ~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+.+|.||.|+.. +.....|..|-
T Consensus 2 ~~~~~C~~C~~~---f~~~~~l~~H~ 24 (57)
T 3uk3_C 2 SSSRECSYCGKF---FRSNYYLNIHL 24 (57)
T ss_dssp ---CBCTTTCCB---CSCHHHHHHHH
T ss_pred CCCccCCCCcch---hCChHHHHHHH
Confidence 467899999743 33455566664
No 269
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.13 E-value=13 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=18.8
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.+..+|.|+.|+.. +.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eme_A 8 SGEKPYVCDYCGKA---FGLSAELVRHQRI 34 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHGG
T ss_pred CCCCCeECCCCChh---hCCHHHHHHHHHh
Confidence 45678999999853 4456667778543
No 270
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.04 E-value=13 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-....+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eom_A 6 SGHGERGHRCSDCGKF---FLQASNFIQHRR 33 (46)
T ss_dssp CCCCCSSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCCe---eCChHHHHHHHH
Confidence 3446778999999753 345566777743
No 271
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.91 E-value=13 Score=24.39 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=18.6
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em2_A 6 SGSGEKPFKCKECGKA---FRQNIHLASHLR 33 (46)
T ss_dssp SCCCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCCEECCcCCch---hCCHHHHHHHHH
Confidence 3346788999999753 335566777743
No 272
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.91 E-value=12 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.529 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytj_A 8 TGEKPYICAECGKA---FTIRSNLIKHQK 33 (46)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCcCeECCCCChh---hCCHHHHHHHHH
Confidence 45678999999753 445666777743
No 273
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.53 E-value=13 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=18.6
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-....+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em4_A 6 SGTGQRPYECIECGKA---FKTKSSLICHRR 33 (46)
T ss_dssp CCCCSSSEECSSSCCE---ESSHHHHHHHHH
T ss_pred ccCCCcCcCCCCCCCc---cCCHHHHHHHHH
Confidence 3346778999999743 335566777743
No 274
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.51 E-value=13 Score=24.28 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=18.6
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yth_A 7 GSGEKPFQCEECGKR---FTQNSHLHSHQR 33 (46)
T ss_dssp CCCSSSBCCSSSCCC---BSSHHHHHHHGG
T ss_pred CCCCcCCCCCCCCcc---cCCHHHHHHHHH
Confidence 346778999999753 345666777744
No 275
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.49 E-value=13 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=18.8
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eop_A 7 GTGEKPHECRECGKS---FSFNSQLIVHQR 33 (46)
T ss_dssp CCCCCSCBCTTTCCB---CSSHHHHHHHHT
T ss_pred cCCCCCeeCCCCCch---hCCHHHHHHHHH
Confidence 345778999999743 445666777744
No 276
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.43 E-value=14 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=19.2
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em6_A 6 SGMGEKCYKCDVCGKE---FSQSSHLQTHQR 33 (46)
T ss_dssp CCCCCCCCBCSSSCCB---CSSHHHHHHHHT
T ss_pred ccCCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 3356788999999743 445666777743
No 277
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.20 E-value=2.2e+02 Score=26.57 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHh
Q 047081 310 QYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREA 346 (432)
Q Consensus 310 ~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~ 346 (432)
.+.+..+....+.++..++.....+.....+|....+
T Consensus 110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~ 146 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES 146 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 278
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.16 E-value=1.6e+02 Score=24.94 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHhhhHHHHH
Q 047081 396 ELHNKIIQLEKQLDAKQALELEIE 419 (432)
Q Consensus 396 ~~~~kil~LEkqLd~kQ~LELEi~ 419 (432)
.++-+..-||-+|++|..|.-.+|
T Consensus 88 ~aiErnalLE~El~EKe~L~~~~Q 111 (111)
T 2v66_B 88 QAIERNAFLESELDEKESLLVSVQ 111 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 466777789999999998876543
No 279
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.15 E-value=15 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2emg_A 6 SGTGENPFICSECGKV---FTHKTNLIIHQK 33 (46)
T ss_dssp CCCSCCSCBCTTTCCB---CSSHHHHHHHHT
T ss_pred CCCCCCCEECCccCcc---cCCHHHHHHHHH
Confidence 3346678999999753 445667778854
No 280
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.09 E-value=13 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eov_A 8 TGEKPYKCSDCGKS---FTWKSRLRIHQK 33 (46)
T ss_dssp SSCCSCBCSSSCCB---CSSHHHHHHHHH
T ss_pred CCCCCccCCccChh---hCCHHHHHHHHH
Confidence 45678999999753 345566777743
No 281
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.07 E-value=14 Score=24.17 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=19.9
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+-....+|.|+.|+.. +.....|..|-..
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eoy_A 6 SGQKEKCFKCNKCEKT---FSCSKYLTQHERI 34 (46)
T ss_dssp CCCCSCCEECSSSCCE---ESSSHHHHHHHTT
T ss_pred ccCCCCCEECcCCCCc---CCCHHHHHHHHHH
Confidence 3356788999999742 4456777788543
No 282
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.05 E-value=9.8 Score=25.00 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=17.7
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
-.+..+|.|++|+.. +..-..|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eoz_A 7 GTGEKPYSCNVCGKA---FVLSAHLNQHL 32 (46)
T ss_dssp CSSCCSEEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCeECcccChh---hCCHHHHHHHH
Confidence 346778999999742 34556677774
No 283
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.02 E-value=33 Score=28.79 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=34.2
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCCc
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.++.|-|+|. ..+...|++.|+. |..+ .|..+.+ .|+|.|.|...-
T Consensus 32 ~~LfVgNLp~---------~vte~dL~~lF~~--fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPI---------DVTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHTT--TSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEeCC----CCEEEEEECCHH
Confidence 4567889986 2367889999999 8764 4665543 689999998743
No 284
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.97 E-value=13 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=18.9
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-....+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoh_A 6 SGSGKKPYECKECRKT---FIQIGHLNQHKR 33 (46)
T ss_dssp SCCCSCSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CcCCCCCcCCCCcCch---hCCHHHHHHHHH
Confidence 3345678999999753 345566777754
No 285
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.81 E-value=12 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=18.3
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq2_A 8 TGGKPYQCNECGKA---FSQTSKLARHQR 33 (46)
T ss_dssp SSSCSSSCCSSCCC---CSSHHHHHHHGG
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 45678999999753 445666777743
No 286
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=41.77 E-value=37 Score=29.46 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=35.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCC-CC-CceeEEEEeCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNF-RG-HSGCALVQFNK 177 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~-~g-h~g~avv~F~~ 177 (432)
.++.|-|++. ..+...|++.|+. |.++ .++.+.++ .| +.|++.|.|.+
T Consensus 126 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQ---------DLSDDDIKSVFEA--FGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHTT--SSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCC---------cCCHHHHHHHHhc--cCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 4677889986 2367889999999 8754 55666553 34 58999999976
No 287
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.63 E-value=11 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=18.6
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2yti_A 7 GTGEKPYKCNECGKV---FTQNSHLARHRG 33 (46)
T ss_dssp CSCCCTTCCSSSCCC---CSSHHHHHHHHT
T ss_pred CCCCcCeECCCCCcc---cCChhHHHHHhH
Confidence 345778999999753 445666777743
No 288
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.25 E-value=15 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=19.7
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.++.+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (47)
T 2epx_A 6 SGTGKKPYECIECGKA---FIQNTSLIRHWR 33 (47)
T ss_dssp CCCCCCSBCCSSSCCC---BSSHHHHHHHHT
T ss_pred ccCCCCCEECCccCch---hCChHHHHHHhH
Confidence 3456778999999753 445667878854
No 289
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=41.24 E-value=14 Score=27.18 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=14.5
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
++.+|.|+.|+.. +.....|..|-
T Consensus 1 SEKpy~C~~C~k~---F~~~~~L~~H~ 24 (60)
T 4gzn_C 1 SERPFFCNFCGKT---YRDASGLSRHR 24 (60)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCccCCCCCCE---eCCHHHHHHHH
Confidence 4567888888742 33445566653
No 290
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.20 E-value=15 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=18.5
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+-.+..+|.|+.|+.. +.....|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2yu8_A 6 SGTGEKPYKCNECGKV---FTQNSHLARHR 32 (46)
T ss_dssp CCCCCSSEECSSSCCE---ESSSHHHHHHT
T ss_pred CCCCCCCeECCcCCch---hCCHHHHHHHH
Confidence 3456788999999743 44566677774
No 291
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.11 E-value=14 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+. .+.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2enc_A 6 SGSGEKPFKCEECGK---GFYTNSQCYSHQR 33 (46)
T ss_dssp CCCCCCSEECSSSCC---EESSHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCC---cCCChHHHHHHHH
Confidence 334677899999974 2445667777754
No 292
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.96 E-value=15 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=18.7
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emy_A 6 SGTGENPYECHECGKA---FSRKYQLISHQR 33 (46)
T ss_dssp CCCSSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCcCcCCCCCCcc---cCcHHHHHHHHH
Confidence 3346788999999753 345566777743
No 293
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.91 E-value=14 Score=24.19 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.1
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+. .+.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2em5_A 7 GSSTKSHQCHECGR---GFTLKSHLNQHQR 33 (46)
T ss_dssp CCCSCSEECSSSCC---EESSHHHHHHHHT
T ss_pred CCCCCCeECCcCCC---ccCCHHHHHHHHH
Confidence 34677899999974 2445667888854
No 294
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.84 E-value=27 Score=28.17 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=32.1
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCCCCceeEEEEeCCC
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~gh~g~avv~F~~~ 178 (432)
.++.|-|+|. ..+...|++.|+. |..+ .|..+- + .|+|.|.|...
T Consensus 16 ~~l~V~nLp~---------~~te~~L~~~F~~--fG~v~~v~i~~---~-kg~aFVef~~~ 61 (101)
T 2cq1_A 16 RVLHIRKLPG---------EVTETEVIALGLP--FGKVTNILMLK---G-KNQAFLELATE 61 (101)
T ss_dssp SEEEEESCCT---------TCCHHHHHHTTTT--TSCEEEEEEET---T-TTEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEC---C-CCEEEEEECCH
Confidence 3566889985 3467889999998 8764 343332 2 78999999864
No 295
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.72 E-value=14 Score=24.05 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=17.4
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eor_A 7 GTGEKPYNCEECGKA---FIHDSQLQEHQ 32 (46)
T ss_dssp SSCCCSEECTTTCCE---ESSHHHHHHHH
T ss_pred cCCCcCccCCCCCCC---cCCHHHHHHHH
Confidence 345778999999743 33555666663
No 296
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.70 E-value=10 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=18.8
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.++.+|.|+.|+. .+.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (44)
T 2eoj_A 8 TGENPYECCECGK---VFSRKDQLVSHQKT 34 (44)
T ss_dssp SSCCSCEETTTTE---ECSSHHHHHHHHTT
T ss_pred CCCcCeeCCCCCC---ccCCHHHHHHHHHH
Confidence 4567899999974 24456677788543
No 297
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=40.69 E-value=14 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=18.2
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emj_A 6 SGTGEKPFECAECGKS---FSISSQLATHQR 33 (46)
T ss_dssp CCCCCCSEECSSSSCE---ESSHHHHHHHHH
T ss_pred CCCCCCCEECCCCCcc---cCCHHHHHHHHH
Confidence 3345778999999742 334556666743
No 298
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=40.66 E-value=38 Score=28.87 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=46.0
Q ss_pred cceEEEeccccccCCCCCccccchhhHHHHHHh-cCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHhhhhhcc
Q 047081 118 PWIGIVVNIPTRRGQDGRSVGESGSKLKDELIR-RGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADH 196 (432)
Q Consensus 118 PwmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~-~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~ 196 (432)
|||..|+.+.+ ...+..-...-+..|+..++. =||-... .+.+++| . ...|-|=.|-.-|..-.+-..|-+++.
T Consensus 11 ~pm~aViFe~~-~~~~~~~Y~~la~~~~~la~~qpGFI~~E--s~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~ 85 (122)
T 2go8_A 11 PPYYAVIFSSV-KSENDTGYGETAERMVSLAADQPGFLGVE--SVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKE 85 (122)
T ss_dssp SCEEEEEEEEE-CC------CHHHHHHHHHHHHSTTEEEEE--EEECTTS-E-EEEEEEESCHHHHHHHHHHC-------
T ss_pred CCEEEEEEEEE-eCCchhHHHHHHHHHHHHHhhCCCceEEE--EEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHH
Confidence 57777766655 222222233345666664444 2555544 5666666 3 456677778888888888999999999
Q ss_pred CChhhhhcc-CCC---CCcceeeecccCCC
Q 047081 197 HGKKDWNDG-NQV---KSGLYGWVARSDDH 222 (432)
Q Consensus 197 ~Gr~dW~~~-~~~---~~~LYGw~AradD~ 222 (432)
.||..|... +.. --.=||+-.+..|+
T Consensus 86 ~Gr~~w~~~y~~rv~~V~r~y~~~~~~~~~ 115 (122)
T 2go8_A 86 KGRSVWYESYAVRVAKVDRQRLFQENTNDL 115 (122)
T ss_dssp ------CCEEEEEEEEECCCCCCCC-----
T ss_pred hHHHHHhccCcEEEEEEEEEecCCCCCcch
Confidence 999999863 211 33556766665555
No 299
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=40.63 E-value=7.7 Score=31.52 Aligned_cols=14 Identities=36% Similarity=1.094 Sum_probs=11.3
Q ss_pred ecCCeeeccCCCCC
Q 047081 36 ISDETFTCPYCPKK 49 (432)
Q Consensus 36 ~~~~~~~CP~C~~~ 49 (432)
-.+..|.||||.-.
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 35688999999865
No 300
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.61 E-value=14 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=19.7
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+-.+..+|.|+.|+.. +.....|..|-..
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2ytn_A 6 SGTGKKPYKCNECGKV---FTQNSHLARHRGI 34 (46)
T ss_dssp CCSCCSSCBCTTTCCB---CSSHHHHHHHGGG
T ss_pred CCCCCcCeECCCCCCe---eCCHHHHHHHhhh
Confidence 3456788999999753 4456667778543
No 301
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=40.59 E-value=38 Score=26.16 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=30.4
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNK 177 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~ 177 (432)
.+.|-|+|. + ..+...|++.|+. |.++....+ ..|++.|.|..
T Consensus 12 ~l~V~nlp~-~-------~~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~ 54 (96)
T 2kvi_A 12 RLFIGNLPL-K-------NVSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDN 54 (96)
T ss_dssp EEEEESSTT-S-------CCCHHHHHHHHTT--TCCCCEEEE-----ETTEEEEEESC
T ss_pred EEEEeCCCc-c-------cCCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECC
Confidence 355788873 0 2367889999999 876544444 36899999986
No 302
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.56 E-value=11 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.295 Sum_probs=19.2
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.++.+|.|+.|+. .+.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k---~F~~~~~L~~H~~ 33 (44)
T 2eox_A 6 SGTDSKSYNCNECGK---AFTRIFHLTRHQK 33 (44)
T ss_dssp CCCCCCCEEETTTTE---EESSSHHHHTTHH
T ss_pred CCCCCCCeECcccCc---ccCCHHHHHHHHH
Confidence 334678899999974 3445666777744
No 303
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.55 E-value=40 Score=25.38 Aligned_cols=40 Identities=35% Similarity=0.370 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHhhhccc
Q 047081 379 ADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 379 ade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~LELEi~qLkG~L 425 (432)
+...|+|| |..+..+..||.+||-+-..+ |-||++|..-|
T Consensus 9 se~q~~kL----Kq~n~~L~~kv~~Le~~c~e~---eQEieRL~~LL 48 (58)
T 3a2a_A 9 SERQLLRL----KQMNVQLAAKIQHLEFSCSEK---EQEIERLNKLL 48 (58)
T ss_dssp --CHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44456665 667788999999998887665 77899987644
No 304
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.52 E-value=10 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=18.6
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.+..+|.|+.|+. .+.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2eq3_A 8 TGEKPYECNQCGK---AFSVRSSLTTHQAI 34 (46)
T ss_dssp CCCCSSEETTTTE---ECSSHHHHHHHHTT
T ss_pred CCCCCeECCCCCh---hhCCHHHHHHHHHH
Confidence 4567899999974 24456667778543
No 305
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.50 E-value=14 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=18.8
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep2_A 7 GTGEKPYECSICGKS---FTKKSQLHVHQQ 33 (46)
T ss_dssp SSCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCcCcCCCCCCcc---cCCHHHHHHHHH
Confidence 345778999999742 445666777754
No 306
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.43 E-value=14 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep1_A 7 GTGEKPYECSDCGKS---FIKKSQLHVHQR 33 (46)
T ss_dssp CSSCCSSCCSSSCCC---CSSHHHHHHHHG
T ss_pred CCCCCCcCCCCCCch---hCCHHHHHHHHH
Confidence 345778999999753 345566777754
No 307
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=46.53 E-value=5.9 Score=22.98 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=14.5
Q ss_pred CeeeccCCCCCCccccCcHHHHhhh
Q 047081 39 ETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
.+|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (30)
T 2lvr_A 2 KPYVCIHCQRQ---FADPGALQRHV 23 (30)
Confidence 47999999743 33455566674
No 308
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.35 E-value=14 Score=24.12 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=19.5
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|+.|+. .+.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2em7_A 7 GTGEKPYKCEECGK---GFICRRDLYTHHMV 34 (46)
T ss_dssp SSCCCSEECSSSCC---EESCHHHHHHHGGG
T ss_pred CCCCcCccCCCccc---hhCCHHHHHHHHHH
Confidence 34567899999974 34456778888543
No 309
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=40.27 E-value=31 Score=28.12 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=15.4
Q ss_pred ceEeecCCeeeccCCCCCCccccCcHHHHhhhhcc
Q 047081 32 YNVKISDETFTCPYCPKKRKHDYLYKDLLQHASGI 66 (432)
Q Consensus 32 ~~vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~gv 66 (432)
+.|....+.|+|-.|+. ..+.-+|+++..|.
T Consensus 50 f~V~~~k~~~~Cf~cg~----gGd~i~fv~~~~~~ 80 (103)
T 1d0q_A 50 FSVSPEKQIFHCFGCGA----GGNAFTFLMDIEGI 80 (103)
T ss_dssp EEEETTTTEEEETTTCC----EECHHHHHHHHHTC
T ss_pred EEEEcCCCEEEECCCCC----CCCHHHHHHHHhCC
Confidence 34444444555555542 23555666665553
No 310
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.09 E-value=14 Score=24.14 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=16.9
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
....+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emz_A 8 SGERPFKCNECGKG---FGRRSHLAGHL 32 (46)
T ss_dssp SCCCSCCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHH
Confidence 45678999999753 33455666663
No 311
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=40.09 E-value=15 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=19.1
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.+..+|.|+.|+. .+.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2el4_A 8 TGVKPYGCSQCAK---TFSLKSQLIVHQRS 34 (46)
T ss_dssp CCCCSEECSSSSC---EESSHHHHHHHGGG
T ss_pred CCCCceECCCCCc---hhCCHHHHHHHHHH
Confidence 4567899999974 34466778888543
No 312
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.03 E-value=15 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=17.9
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.++.+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eoo_A 8 SGERPYGCNECGKN---FGRHSHLIEHLK 33 (46)
T ss_dssp SCCCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCEEccccCcc---cCCHHHHHHHHH
Confidence 45778999999743 445566777743
No 313
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.02 E-value=15 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.441 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yso_A 6 SGSREKSHQCRECGEI---FFQYVSLIEHQV 33 (46)
T ss_dssp CSSCCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred ccCCCCCEEccccChh---hCCHHHHHHHHH
Confidence 3345678999999753 445666777743
No 314
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.99 E-value=16 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.3
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eq0_A 8 TGEKPYKCHECGKV---FRRNSHLARHQL 33 (46)
T ss_dssp TCCCCEECTTTCCE---ESSHHHHHHHHT
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHH
Confidence 45778999999742 445666777854
No 315
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.94 E-value=15 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=18.7
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
.+..+|.|+.|+.. +.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ene_A 8 TGEKPYKCNECGKV---FRHNSYLSRHQRI 34 (46)
T ss_dssp CCSSSEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCCCCch---hCChHHHHHHHhh
Confidence 45778999999742 4456667778543
No 316
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.92 E-value=15 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=17.5
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emh_A 7 GTGERPYICTVCGKA---FTDRSNLIKHQ 32 (46)
T ss_dssp CSCCCSEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCCCcCCCCCCch---hCCHHHHHHHH
Confidence 345678999999743 33555666674
No 317
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.84 E-value=16 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=17.5
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (43)
T 2yrm_A 6 SGNGAFFCNECDCR---FSEEASLKRHTL 31 (43)
T ss_dssp SSSCCBCCSSSCCC---BSSHHHHHHHHH
T ss_pred CCCCCEECCCCCCe---eCChHHHHHHHH
Confidence 35678999999753 335566777743
No 318
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.84 E-value=14 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=18.1
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoq_A 8 TGEKPFKCDICGKS---FCGRSRLNRHSM 33 (46)
T ss_dssp SSSCSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CCCCCcCCCcCCch---hCCHHHHHHHHH
Confidence 45678999999753 445666777744
No 319
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=39.57 E-value=14 Score=24.95 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=18.0
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+.+|.|+.|+. .+.....|..|-.
T Consensus 4 ~~kp~~C~~C~k---~F~~~~~L~~H~~ 28 (48)
T 3iuf_A 4 RDKPYACDICGK---RYKNRPGLSYHYA 28 (48)
T ss_dssp TTSCEECTTTCC---EESSHHHHHHHHH
T ss_pred CCcCEECCCcCc---ccCCHHHHHHHhh
Confidence 467899999974 3445666888855
No 320
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.57 E-value=13 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-..+.+|.|+.|+. .+.....|..|...
T Consensus 7 h~~~k~~~C~~C~k---~F~~~~~L~~H~~~ 34 (45)
T 2epu_A 7 GTGQKPFECTHCGK---SFRAKGNLVTHQRI 34 (45)
T ss_dssp CCSCCSEEETTTTE---EESSHHHHHHHHTT
T ss_pred CCCCcCccCCCCCC---ccCChHHHHHHHHH
Confidence 34577899999974 24456667888543
No 321
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.56 E-value=15 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.360 Sum_probs=18.6
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eml_A 7 GTGEKPYECSVCGKA---FSHRQSLSVHQR 33 (46)
T ss_dssp CSSCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred cCCCCCeeCCCcCCc---cCCHHHHHHHHH
Confidence 346788999999742 445666777754
No 322
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.45 E-value=8.5 Score=27.80 Aligned_cols=13 Identities=23% Similarity=0.905 Sum_probs=9.6
Q ss_pred CeeeccCCCCCCc
Q 047081 39 ETFTCPYCPKKRK 51 (432)
Q Consensus 39 ~~~~CP~C~~~kk 51 (432)
..|+||.|+..+.
T Consensus 29 ~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 29 DDWCCPVCGVSKD 41 (46)
T ss_dssp TTCBCTTTCCBGG
T ss_pred CCCcCcCCCCcHH
Confidence 3499999986543
No 323
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.14 E-value=16 Score=23.61 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=17.6
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (44)
T 2emx_A 6 SGEKPFGCSCCEKA---FSSKSYLLVHQQ 31 (44)
T ss_dssp SSCCCEECSSSSCE---ESSHHHHHHHHH
T ss_pred CCCcCccCCCCCcc---cCCHHHHHHHHH
Confidence 35678999999743 335566777743
No 324
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=38.98 E-value=16 Score=22.37 Aligned_cols=22 Identities=36% Similarity=0.777 Sum_probs=15.1
Q ss_pred eeeccCCCCCCccccCcHHHHhhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+|.|+.|+.. +.....|..|-.
T Consensus 2 p~~C~~C~k~---F~~~~~L~~H~~ 23 (33)
T 1rim_A 2 KFACPECPKR---FMRSDHLSKHIT 23 (33)
T ss_dssp CCCCSSSCCC---CSSHHHHHHHHH
T ss_pred cccCCCCCch---hCCHHHHHHHHH
Confidence 6899999753 345566777744
No 325
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.80 E-value=16 Score=23.93 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.++.+|.|+.|+. .+..-..|..|-..
T Consensus 7 H~~~k~~~C~~C~k---~F~~~~~L~~H~~~ 34 (46)
T 2emf_A 7 GTGGKHFECTECGK---AFTRKSTLSMHQKI 34 (46)
T ss_dssp SSSSCCEECSSSCC---EESCHHHHHHHGGG
T ss_pred cCCCCCeECCCCCc---hhCCHHHHHHHHHH
Confidence 34677899999974 24456667778543
No 326
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.61 E-value=17 Score=23.64 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=19.5
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2epz_A 6 SGTGEKPFDCIDCGKA---FSDHIGLNQHRR 33 (46)
T ss_dssp SCCCCCSBCCTTTCCC---BSSHHHHHHHHT
T ss_pred CcCCCCCeECCCCCce---eCCHHHHHHHHH
Confidence 4456788999999753 445666777754
No 327
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.53 E-value=16 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=18.1
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytk_A 7 GSGEKPYKCNECGKV---FTQNSHLTNHWR 33 (46)
T ss_dssp SSSSCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCEeCCcCCCc---cCCHHHHHHHHH
Confidence 345778999999753 335556667743
No 328
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=38.44 E-value=11 Score=27.80 Aligned_cols=14 Identities=21% Similarity=0.878 Sum_probs=10.4
Q ss_pred CeeeccCCCCCCcc
Q 047081 39 ETFTCPYCPKKRKH 52 (432)
Q Consensus 39 ~~~~CP~C~~~kk~ 52 (432)
..|.||.|...+.+
T Consensus 35 ~dw~CP~Cg~~K~~ 48 (52)
T 1e8j_A 35 DDWACPVCGASKDA 48 (52)
T ss_dssp TTCCCSSSCCCTTS
T ss_pred CCCcCCCCCCcHHH
Confidence 45999999865543
No 329
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=38.28 E-value=16 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=17.6
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emk_A 8 TGEKPYECKECGKA---FSQTTHLIQHQR 33 (46)
T ss_dssp SSSCSCBCSSSCCB---CSCHHHHHHHHH
T ss_pred CCCCceECCCCCch---hCCHHHHHHHHH
Confidence 45678999999753 335556667743
No 330
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=38.26 E-value=17 Score=23.66 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2em0_A 6 SGMGEKTWKCRECDMC---FSQASSLRLHQN 33 (46)
T ss_dssp CSCCCCCCCCSSSCCC---CSSHHHHHHHGG
T ss_pred ccCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3346778999999753 445666777754
No 331
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.22 E-value=14 Score=24.21 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=18.2
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+-.+..+|.|+.|+.. +..-..|..|-
T Consensus 6 ~h~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytm_A 6 SGTGEKPYKCMECGKA---FGDNSSCTQHQ 32 (46)
T ss_dssp CCSSCCSSSBTTTTBC---CSSHHHHHHHH
T ss_pred CCCCCCCcCCCCCCch---hCCHHHHHHHH
Confidence 4456788999999743 33455666664
No 332
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.06 E-value=17 Score=23.69 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=19.5
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.++.+|.|+.|+. .+.....|..|-..
T Consensus 7 h~~~~~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2ep0_A 7 GTGEKPYKCDVCHK---SFRYGSSLTVHQRI 34 (46)
T ss_dssp STTCCSEECSSSCC---EESSHHHHHHHHTT
T ss_pred CCCCCCeeCcccCc---ccCChHHHHHHHHH
Confidence 34677899999974 34456678888543
No 333
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.90 E-value=17 Score=23.79 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=20.0
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+-.+..+|.|+.|+.. +..-..|..|...
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytq_A 6 SGAGEKPYGCSECGKA---FSSKSYLIIHMRT 34 (46)
T ss_dssp CSSCCCSCBCSSSCCB---CSCHHHHHHHHTT
T ss_pred CcCCCCCcCCCccChh---hCChHHHHHHHHH
Confidence 3346778999999753 4456677788543
No 334
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.85 E-value=3.2e+02 Score=27.20 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=27.5
Q ss_pred HhHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHhhhHHHHHhhh
Q 047081 371 LATLEQQKA--DDNVRKLAEDQKIEKEELHNKIIQLEKQLD----AKQALELEIERLR 422 (432)
Q Consensus 371 lA~~EQ~ka--de~vlkL~e~hkreKe~~~~kil~LEkqLd----~kQ~LELEi~qLk 422 (432)
++.+|-|-+ .--|+-|-+--.+++-..++||.+||-|.- .-|.++-||+++|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 413 FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444433 444566655555555555667766665542 2244556666664
No 335
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.77 E-value=16 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|+.|+.. +.....|..|-..
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytg_A 7 GTGEKPFKCGECGKS---YNQRVHLTQHQRV 34 (46)
T ss_dssp CSSCCSEECTTTCCE---ESSSHHHHTTGGG
T ss_pred CCCCCCeECCCCCcc---cCCHHHHHHHHHH
Confidence 346778999999743 4456677778543
No 336
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.77 E-value=17 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=19.3
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|+.|+.. +.....|..|-..
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2en8_A 7 GSGEKSHTCDECGKN---FCYISALRIHQRV 34 (46)
T ss_dssp CCCCSSEECTTTCCE---ESSHHHHHHHHTT
T ss_pred CCCCCCeECCCcCcc---cCCHHHHHHHHHH
Confidence 346778999999743 3456677788543
No 337
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.66 E-value=17 Score=23.64 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2emm_A 7 GTGERPHKCNECGKS---FIQSAHLIQHQR 33 (46)
T ss_dssp SSCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCCCeeCCCCChh---hCCHHHHHHHHH
Confidence 345778999999743 345566777743
No 338
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=37.65 E-value=17 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=18.4
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+..+|.||.|+. .+.....|..|-..
T Consensus 26 ~~~~~~C~~C~~---~f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 26 DVRPYHCTYCNF---SFKTKGNLTKHMKS 51 (57)
T ss_dssp SCCCEECSSSSC---EESSHHHHHHHHHS
T ss_pred CCCCccCCCCCc---hhcCHHHHHHHHHH
Confidence 457899999974 24466778888554
No 339
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=37.41 E-value=26 Score=36.47 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.7
Q ss_pred cchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 139 ESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 139 ~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
.|-.+|.++|+. |.|+.-.+.|-..| .+|||+|...-
T Consensus 64 ~~~~~l~~y~~~--~g~i~~~~~~~~~g--~~~~vef~~~~ 100 (464)
T 3pq1_A 64 ISENKFLKYLSQ--FGPINNHFFYESFG--LYAVVEFCQKE 100 (464)
T ss_dssp ---CHHHHHHGG--GSCCCCEEEECSSS--EEEEEECC---
T ss_pred CCHHHHHHHHHh--cCCcceEEEEccCC--eEEEEEeCCHH
Confidence 377899999999 99999999998777 59999999853
No 340
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=37.37 E-value=16 Score=24.78 Aligned_cols=20 Identities=35% Similarity=0.653 Sum_probs=14.7
Q ss_pred eeeccCCCCCCccccCcHHHHhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
-|-||.|.. +.-....|..|
T Consensus 5 GFiCP~C~~---~l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCMK---SLGSADELFKH 24 (34)
T ss_dssp EEECTTTCC---EESSHHHHHHH
T ss_pred ccCCcHHHH---HcCCHHHHHHH
Confidence 399999973 33467778877
No 341
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=37.37 E-value=17 Score=24.83 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=17.7
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.++.+|.|+.|+.. +..-..|..|-.
T Consensus 20 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 45 (54)
T 1yui_A 20 QSEQPATCPICYAV---IRQSRNLRRHLE 45 (54)
T ss_dssp TSSCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCCccCCCCCcc---cCCHHHHHHHHH
Confidence 45678999999742 345566777743
No 342
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=43.49 E-value=7.1 Score=22.17 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=13.1
Q ss_pred eeeccCCCCCCccccCcHHHHhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
+|.|+.|+.. +..-..|..|
T Consensus 2 p~~C~~C~k~---f~~~~~l~~H 21 (26)
T 2lvu_A 2 PYVCERCGKR---FVQSSQLANH 21 (26)
Confidence 6899999753 2344556666
No 343
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.05 E-value=16 Score=23.78 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=18.6
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq4_A 7 GTGEKLYNCKECGKS---FSRAPCLLKHER 33 (46)
T ss_dssp SSCCCCCCBTTTTBC---CSCHHHHHHHHH
T ss_pred CCCCCCeECCCCCCc---cCchHHHHHHHH
Confidence 346778999999743 345666777754
No 344
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=36.78 E-value=83 Score=27.58 Aligned_cols=37 Identities=5% Similarity=0.105 Sum_probs=29.1
Q ss_pred cchhhHHHHHHhcCCCC-cceeeecCCC-C-CceeEEEEeCC
Q 047081 139 ESGSKLKDELIRRGLHP-TRVQSLWNFR-G-HSGCALVQFNK 177 (432)
Q Consensus 139 ~s~~~L~~~l~~~GF~p-~kv~~l~~~~-g-h~g~avv~F~~ 177 (432)
.+-..|+++|+. |.+ ..+...+++. | ..||+.|+|..
T Consensus 18 tte~~Lk~~Fs~--fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 18 IQDISIKNYFKK--YGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCHHHHHHHHHT--TSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCHHHHHHHHHh--cCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 467889999999 876 6666666665 3 79999999996
No 345
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=36.43 E-value=18 Score=23.60 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=19.1
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|+.|+.. +.....|..|-..
T Consensus 7 h~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2el6_A 7 GAGVNPYKCSQCEKS---FSGKLRLLVHQRM 34 (46)
T ss_dssp SCCCCSEECSSSSCE---ESSHHHHHHHHGG
T ss_pred CCCCCCeECCCCCcc---cCCHHHHHHHHHH
Confidence 346778999999742 3456667778543
No 346
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.34 E-value=2e+02 Score=24.34 Aligned_cols=30 Identities=27% Similarity=0.172 Sum_probs=19.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhHHHHH
Q 047081 315 RIFTEHENFKLQLEAQKKELEFLGVDLQKR 344 (432)
Q Consensus 315 ~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~ 344 (432)
..+.+.+.....|...+.+|+....+|..+
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~r 91 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKR 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777666666543
No 347
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=36.33 E-value=18 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=17.3
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+..+|.||.|+. .+.....|..|-
T Consensus 27 ~~~~~~C~~C~~---~f~~~~~l~~H~ 50 (60)
T 2adr_A 27 NEKPYPCGLCNR---AFTRRDLLIRHA 50 (60)
T ss_dssp SSCSEECTTTCC---EESSHHHHHHHH
T ss_pred CCCCccCCCCCC---ccCCHHHHHHHH
Confidence 456899999974 244566788884
No 348
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=36.17 E-value=10 Score=28.25 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=10.9
Q ss_pred CeeeccCCCCCCccc
Q 047081 39 ETFTCPYCPKKRKHD 53 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~ 53 (432)
..|.||.|...+.++
T Consensus 35 ~dw~CP~Cga~K~~F 49 (55)
T 2v3b_B 35 ADWVCPDCGVGKIDF 49 (55)
T ss_dssp TTCCCTTTCCCGGGE
T ss_pred CCCcCCCCCCCHHHc
Confidence 459999998755443
No 349
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=36.11 E-value=52 Score=27.58 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=29.9
Q ss_pred eEEEeccccccCCCCCccccchhhH----HHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKL----KDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L----~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
++.|-|++. . .+...| .+.|+. |.++.-..+-......|+|.|.|..-
T Consensus 31 ~LfV~nL~~-~--------~~e~~L~~~L~~~F~~--~G~I~~v~i~~~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINP-E--------VPKEKLQALLYALASS--QGDILDIVVDLSDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCT-T--------SCHHHHHHHHHHHHHH--HSCEEEEEECCCCSSCCCEEEEESSH
T ss_pred EEEEeCCCC-C--------CCHHHHHHHHHHHhcc--CCCeEEEEeccCCCcCCEEEEEECCH
Confidence 466889885 1 234444 467999 87653222222234789999999763
No 350
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.30 E-value=7.6 Score=22.51 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=13.6
Q ss_pred eeeccCCCCCCccccCcHHHHhhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+|.|+.|+.. +.....|..|-
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 2lvt_A 2 PCQCVMCGKA---FTQASSLIAHV 22 (29)
Confidence 6899999753 23445566664
No 351
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.05 E-value=18 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.475 Sum_probs=17.1
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
.+..+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emp_A 8 TGVKPYMCNECGKA---FSVYSSLTTHQ 32 (46)
T ss_dssp SCCCSEECSSSCCE---ESCHHHHHHHH
T ss_pred CCCcCeECCCCCch---hCCHHHHHHHH
Confidence 45678999999753 33555666663
No 352
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=35.95 E-value=10 Score=27.90 Aligned_cols=15 Identities=20% Similarity=0.817 Sum_probs=10.7
Q ss_pred CCeeeccCCCCCCcc
Q 047081 38 DETFTCPYCPKKRKH 52 (432)
Q Consensus 38 ~~~~~CP~C~~~kk~ 52 (432)
-..|.||.|...+.+
T Consensus 33 P~dw~CP~Cg~~K~~ 47 (52)
T 1yk4_A 33 PDDWVCPLCGAPKSE 47 (52)
T ss_dssp CTTCBCTTTCCBGGG
T ss_pred CCCCcCCCCCCCHHH
Confidence 345999999865443
No 353
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=35.85 E-value=20 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+. .+..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2ema_A 8 TGEKRYKCNECGK---VFSRNSQLSQHQK 33 (46)
T ss_dssp TTSCCEECSSSCC---EESSHHHHHHHHT
T ss_pred CCCcCcCCCCCcc---hhCCHHHHHHHHH
Confidence 4567899999974 2445666777743
No 354
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.79 E-value=16 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=17.4
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
..+.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytt_A 8 EGEKPYQCSECGKS---FSGSYRLTQHW 32 (46)
T ss_dssp SCCCTTCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCCeeCCCCCcc---cCCHHHHHHHH
Confidence 45678999999753 44556677773
No 355
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=35.57 E-value=55 Score=26.71 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=31.8
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcc-eeeecCCCCCceeEEEEeCCC
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTR-VQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~gh~g~avv~F~~~ 178 (432)
++-|-|+|. ..+..+|++.|+. |.++. |..+- ..|+|.|+|...
T Consensus 23 ~l~V~NLp~---------~~te~~L~~lF~~--fG~V~~v~i~~----~kg~AFVef~~~ 67 (100)
T 3r27_A 23 VVHIRGLID---------GVVEADLVEALQE--FGPISYVVVMP----KKRQALVEFEDV 67 (100)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEET----TTTEEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhc--cCCEEEEEEEc----CCCEEEEEECCH
Confidence 566889986 3467889999999 87643 33332 357999999864
No 356
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=35.09 E-value=11 Score=28.13 Aligned_cols=14 Identities=21% Similarity=0.859 Sum_probs=10.4
Q ss_pred CeeeccCCCCCCcc
Q 047081 39 ETFTCPYCPKKRKH 52 (432)
Q Consensus 39 ~~~~CP~C~~~kk~ 52 (432)
..|.||.|+..|.+
T Consensus 35 ~dw~CP~Cg~~K~~ 48 (54)
T 4rxn_A 35 DDWVCPLCGVGKDE 48 (54)
T ss_dssp TTCBCTTTCCBGGG
T ss_pred CCCcCcCCCCcHHH
Confidence 45999999876543
No 357
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.99 E-value=11 Score=30.47 Aligned_cols=15 Identities=20% Similarity=0.709 Sum_probs=10.7
Q ss_pred CeeeccCCCCCCccc
Q 047081 39 ETFTCPYCPKKRKHD 53 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~ 53 (432)
..|.||.|...+.++
T Consensus 59 ddW~CPvCga~K~~F 73 (81)
T 2kn9_A 59 DDWSCPDCGAAKSDF 73 (81)
T ss_dssp TTCCCTTTCCCGGGE
T ss_pred CCCcCCCCCCCHHHc
Confidence 459999998655443
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=34.57 E-value=57 Score=26.76 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.7
Q ss_pred chhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 140 SGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 140 s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
+...|++.|+. |.++.-..+- -..|++.|.|...
T Consensus 50 te~~L~~~F~~--~G~I~~v~i~---~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 50 TPTLLRGAFSP--FGNIIDLSMD---PPRNCAFVTYEKM 83 (121)
T ss_dssp CHHHHHHHHST--TCCCSCEEEE---TTTTEEEEECSSH
T ss_pred CHHHHHHHHHc--cCCEEEEEEe---CCCCEEEEEECCH
Confidence 67889999999 8765433331 4678999999753
No 359
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=34.13 E-value=55 Score=29.98 Aligned_cols=55 Identities=16% Similarity=0.046 Sum_probs=34.0
Q ss_pred eEEEeccccccCCCCCccccchhhHH----HHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHH
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLK----DELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~----~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~ 186 (432)
++.|-|++. ..+...|+ +.|+. |.++.-..+....-+.|++.|.|.+.-. -..|+
T Consensus 11 ~l~V~nlp~---------~~~~~~l~~~L~~~F~~--~G~i~~v~~~~~~~~~g~afV~f~~~~~-a~~A~ 69 (282)
T 3pgw_A 11 TIYINNLNE---------KIKKDELKKSLYAIFSQ--FGQILDILVSRSLKMRGQAFVIFKEVSS-ATNAL 69 (282)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHHHhc--cCCeEEEEEcCCCCcceEEEEEECCHHH-HHHHH
Confidence 466889886 23456655 78888 7654433333233378999999975433 34444
No 360
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.96 E-value=22 Score=23.14 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=17.9
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-.+..+|.|+.|+.. +..-..|..|..
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytd_A 7 GSGEKPYKCSECGKA---FHRHTHLNEHRR 33 (46)
T ss_dssp SCCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCcCeECCCCCCe---eCChHHHHHHHH
Confidence 345678999999753 334556667743
No 361
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.88 E-value=3.3e+02 Score=28.30 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 242 SGLVEEEARKKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKDRLVQGYNEEIKKIQLSA 309 (432)
Q Consensus 242 ~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~~l~~~~neEi~kmq~~a 309 (432)
.+-+....+.....|..|+|.....-+.++.|..+++. .+..+.++....+.|..++.+.|...
T Consensus 95 q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~----~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVK----TQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc----ccccccchhhHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555444555555444443 23344445555666666666555443
No 362
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=33.77 E-value=1.8e+02 Score=23.19 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 047081 348 NENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA 413 (432)
Q Consensus 348 ~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~ 413 (432)
=..-|+||.+..+......+.++..++.+..+.- ..+-+||-+|.++|.....
T Consensus 21 L~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V-------------~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 21 LVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAV-------------SALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHh
Confidence 3446778888887777788889998888754432 3467899999999987654
No 363
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.57 E-value=19 Score=23.30 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytr_A 6 SGTGEKPYKCNECGKA---FSQTSKLARHQR 33 (46)
T ss_dssp CCSSCCTTCCTTTCCC---CSSHHHHHHHHT
T ss_pred CCCCCcCcCCCCCCCc---cCCHHHHHHHHH
Confidence 3346778999999753 445666778854
No 364
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=33.53 E-value=18 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=17.4
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
.+.+|.|+.|+. .+-....|..|-
T Consensus 5 gekp~~C~~CgK---~F~~~s~L~~H~ 28 (36)
T 1fv5_A 5 KPARFMCLPCGI---AFSSPSTLEAHQ 28 (36)
T ss_dssp SCCCCEETTTTE---ECSCHHHHHHHH
T ss_pred CccCeECCCCCC---ccCCHhHccCcC
Confidence 467899999974 234566788884
No 365
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=33.45 E-value=21 Score=25.56 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=5.6
Q ss_pred CCeeeccCCC
Q 047081 38 DETFTCPYCP 47 (432)
Q Consensus 38 ~~~~~CP~C~ 47 (432)
..+|.||.|+
T Consensus 47 ~~~~~C~~C~ 56 (73)
T 1f2i_G 47 QKPFQCRICM 56 (73)
T ss_dssp CCCEECTTTC
T ss_pred CCCeECCCCC
Confidence 3456666665
No 366
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.27 E-value=19 Score=23.44 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+. .+..-..|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k---~f~~~~~L~~H~~ 33 (46)
T 2en6_A 6 SGSGEKPYGCNECGK---TFSQKSILSAHQR 33 (46)
T ss_dssp CCCSSCCEEETTTTE---EESSHHHHHHHHH
T ss_pred ccCCCcCeECCCCCc---ccCchHHHHHHHH
Confidence 345678899999974 2345566777743
No 367
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.17 E-value=23 Score=23.58 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=16.7
Q ss_pred cCCeeeccC--CCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPY--CPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~--C~~~kk~~y~~~~LlqHA 63 (432)
++.+|.||+ |+. .+..-..|..|-
T Consensus 6 gekp~~C~~~~C~k---~F~~~~~L~~H~ 31 (38)
T 2eln_A 6 SGILLKCPTDGCDY---STPDKYKLQAHL 31 (38)
T ss_dssp CCCCEECSSSSCCC---EESCHHHHHHHH
T ss_pred CCCCCCCCCCCCCC---ccCCHHHHHHHH
Confidence 567899987 974 344566677774
No 368
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.07 E-value=16 Score=23.73 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-.+..+|.|+.|+. .+..-..|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k---~F~~~~~L~~H~~ 33 (46)
T 2eoe_A 6 SGTGEKPYKCNECGK---VFTQNSHLANHQR 33 (46)
T ss_dssp CCCCCCSSEETTTTE---ECSSHHHHHHHHG
T ss_pred CCCCCCCeECCCcCh---hhCCHHHHHHHHH
Confidence 334677899999974 2445666777754
No 369
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*
Probab=32.34 E-value=12 Score=40.22 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=52.2
Q ss_pred hhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHhhHhhhhhccCChhhhhccCCCCCcceeeecc
Q 047081 141 GSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEKSFEADHHGKKDWNDGNQVKSGLYGWVAR 218 (432)
Q Consensus 141 ~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~~Fe~~~~Gr~dW~~~~~~~~~LYGw~Ar 218 (432)
-..|-+.+..+||+-+-+.++.+++|..-.--|-|.+.|.=. .++=.+|-.|+-.+..+-.+|+||-.
T Consensus 299 l~~li~ri~~~g~~~V~lqaf~dp~gdg~~~~~yfpn~~~p~----------~~Dlf~~v~wql~~r~~v~vyAWmp~ 366 (618)
T 4f9d_A 299 IDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPM----------KADIFSRVAWQLRTRSGVNIYAWMPV 366 (618)
T ss_dssp HHHHHHHHHHTTCCEEEEECEECTTCSSCBCEESSCCSSSCB----------SCSCHHHHHHHHHHHHCCEEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEEEEEEcCCCCcccccccCCCCCcch----------hhhhHHHHHHHHhhhcCCEEEEeeeh
Confidence 345777899999999999999999887545588899988766 22333488998655557799999976
No 370
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.02 E-value=18 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=19.1
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
-.+..+|.|+.|+. .+..-..|..|-..
T Consensus 7 H~~~~~~~C~~C~k---~f~~~~~L~~H~~~ 34 (46)
T 2en1_A 7 GSGEKPFKCEECGK---RFTQNSQLHSHQRV 34 (46)
T ss_dssp CCCCCSEEETTTTE---EESSHHHHHHHGGG
T ss_pred CCCCCCeeCCCCCc---ccCCHHHHHHHHHH
Confidence 34577899999974 24456667777543
No 371
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=32.02 E-value=18 Score=27.20 Aligned_cols=17 Identities=18% Similarity=0.702 Sum_probs=12.5
Q ss_pred eEeecCCeeeccCCCCC
Q 047081 33 NVKISDETFTCPYCPKK 49 (432)
Q Consensus 33 ~vk~~~~~~~CP~C~~~ 49 (432)
.|-...++|.||||...
T Consensus 26 ~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 26 QVDYRAKLWACNFCYQR 42 (59)
T ss_dssp EEEGGGTEEECSSSCCE
T ss_pred EEECCCCEEEcccCCCc
Confidence 45555679999999743
No 372
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=31.68 E-value=54 Score=29.29 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=32.8
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCcc
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWP 180 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~ 180 (432)
+.|-|++. ..+...|.+.|+. |..+.-..++. +...|++.|+|...-.
T Consensus 49 l~VgNL~~---------~vted~L~~~Fs~--fG~V~~V~i~~-k~~rgfAFVeF~d~~~ 96 (164)
T 1sjr_A 49 IIVENLFY---------PVTLDVLHQIFSK--FGTVLKIITFT-KNNQFQALLQYADPVS 96 (164)
T ss_dssp EEECSCCS---------CCCHHHHHHHHHH--HSCEEEEEEEE-SSSCEEEEEEESCHHH
T ss_pred EEEeCcCC---------CCCHHHHHHHHHh--cCCEEEEEEEe-CCCCCEEEEEECCHHH
Confidence 55778875 2367789999999 87654444432 2356899999976543
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=31.57 E-value=35 Score=28.39 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=50.4
Q ss_pred ceEEEeccccccC-CCCCccccchhhHHHHHHhcCCCCcc-eeeecCCC-----C-CceeEEEEeCCCccchHHHHhhHh
Q 047081 119 WIGIVVNIPTRRG-QDGRSVGESGSKLKDELIRRGLHPTR-VQSLWNFR-----G-HSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 119 wmgIi~N~~~~~~-~dg~~~G~s~~~L~~~l~~~GF~p~k-v~~l~~~~-----g-h~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
.+++|.|+.+.+. .+ +-...|++.|+. |.++. |++.-.+. | ..|++.|.|...- +|.+--+
T Consensus 21 ~vl~L~Nm~~~~el~d-----dleedl~eef~k--~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e----~A~~Ai~ 89 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDD-----DLEGEVTEECGK--FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS----ETHKAIQ 89 (118)
T ss_dssp CEEEEESCSCGGGCCT-----THHHHHHHHHTT--TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHH----HHHHHHH
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHHHHHhc--cCCEeEEEEeecCCCcccCCcceEEEEEEECCHH----HHHHHHH
Confidence 3588999976322 22 134788999999 88754 44444433 2 2499999998753 3333222
Q ss_pred hhhhccCChhhhhccCCCCCcceeeecccCCCCCC
Q 047081 191 SFEADHHGKKDWNDGNQVKSGLYGWVARSDDHSLN 225 (432)
Q Consensus 191 ~Fe~~~~Gr~dW~~~~~~~~~LYGw~AradD~~~~ 225 (432)
.+. || |. .++.|..-.+..++|...
T Consensus 90 ~Ln----Gr--~f----~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 90 ALN----GR--WF----AGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp HHT----TC--EE----TTEECEEEEECHHHHHTT
T ss_pred HHC----CC--EE----CCcEEEEEEcChHhcccc
Confidence 222 22 11 356777777777766543
No 374
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.56 E-value=22 Score=25.93 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+-..+.+|.|+.|+.. +.....|..|-
T Consensus 9 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 35 (77)
T 2ct1_A 9 THSGEKPYECYICHAR---FTQSGTMKMHI 35 (77)
T ss_dssp CCSCCCSEECTTTCCE---ESCHHHHHHHH
T ss_pred ccCCCCCeECCCcCch---hCCHHHHHHHH
Confidence 4456788999999752 44566677774
No 375
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=31.48 E-value=13 Score=28.97 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=10.8
Q ss_pred CeeeccCCCCCCccc
Q 047081 39 ETFTCPYCPKKRKHD 53 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~ 53 (432)
..|.||.|...+.++
T Consensus 39 ddw~CP~Cga~K~~F 53 (70)
T 1dx8_A 39 DSFMCPACRSPKNQF 53 (70)
T ss_dssp TTCBCTTTCCBGGGE
T ss_pred CCCcCCCCCCCHHHc
Confidence 459999998755443
No 376
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.37 E-value=25 Score=24.06 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.4
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
...+|.|+.|+.. +.....|..|-
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (54)
T 2eps_A 9 VGKPYICQSCGKG---FSRPDHLNGHI 32 (54)
T ss_dssp SSCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHH
Confidence 4678999999752 44566788884
No 377
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.95 E-value=51 Score=26.57 Aligned_cols=38 Identities=24% Similarity=0.137 Sum_probs=27.6
Q ss_pred ccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 138 GESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 138 G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
+.+...|++.|+. |.++.-..+- ....|++.|.|...-
T Consensus 28 ~~te~~L~~~F~~--~G~V~~v~i~--~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 28 GYSKDVLLRLLQK--YGEVLNLVLS--SKKPGTAVVEFATVK 65 (100)
T ss_dssp SCCHHHHHHHHHT--TSCEEEEEEE--SSSSSEEEEEESCHH
T ss_pred CCCHHHHHHHHHh--cCCEEEEEEc--cCCCCEEEEEECCHH
Confidence 4578899999999 8764333332 357899999998743
No 378
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=30.72 E-value=52 Score=27.31 Aligned_cols=59 Identities=25% Similarity=0.288 Sum_probs=34.9
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhc----CCCCc---ceeeecCCCCCceeEEEEeCCCccchHHHHhhH
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRR----GLHPT---RVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFE 189 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~----GF~p~---kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe 189 (432)
.+.|-|+|. ..+...|.+.|+.- |.... .+....- ....|++.|.|.+. ..-..|+.+.
T Consensus 6 ~l~V~nLp~---------~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~-~~A~~A~~~~ 71 (172)
T 2g4b_A 6 RLYVGNIPF---------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSV-DETTQAMAFD 71 (172)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSH-HHHHHHGGGT
T ss_pred EEEEcCCCc---------ccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCH-HHHHHHHHhC
Confidence 467889986 34788999999993 22110 2222221 12478999999753 3334444433
No 379
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=30.59 E-value=79 Score=24.73 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=25.8
Q ss_pred hhhHHHHHHhcCCCCcc-eeeecC-CCCCceeEEEEeCCCccch
Q 047081 141 GSKLKDELIRRGLHPTR-VQSLWN-FRGHSGCALVQFNKNWPGL 182 (432)
Q Consensus 141 ~~~L~~~l~~~GF~p~k-v~~l~~-~~gh~g~avv~F~~~w~Gf 182 (432)
...++.+|..+||.|+. |+++.. +.| |-.+|....+-..+
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~g--gPi~v~v~g~~iaL 60 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLG--DPIHIETRRVSLVL 60 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTT--CCEEEECSSCEEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCC--CcEEEEECCEEEEc
Confidence 46788889999999855 555543 233 55677776654333
No 380
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.97 E-value=1.8e+02 Score=24.14 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 047081 348 NENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA 413 (432)
Q Consensus 348 ~~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~ 413 (432)
=..-|+||....+........++..++.+..+-- ..+-+||-+|.++|.....
T Consensus 21 L~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V-------------~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 21 LVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAV-------------SALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHh
Confidence 3446778888777777778888888888744432 3467899999999987665
No 381
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.86 E-value=70 Score=24.52 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=24.9
Q ss_pred chhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCC
Q 047081 140 SGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 140 s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~ 178 (432)
+...|++.|+. |.++.-..+ .-..|++.|.|...
T Consensus 26 t~~~l~~~F~~--~G~i~~v~i---~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 26 TPTLLRGAFSP--FGNIIDLSM---DPPRNCAFVTYEKM 59 (97)
T ss_dssp CHHHHHHHHTT--TSCEEEEEE---ETTTTEEEEEESSH
T ss_pred CHHHHHHHHhh--CCCEEEEEe---cCCCCEEEEEECCH
Confidence 67889999999 876544333 24668999999863
No 382
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=29.86 E-value=39 Score=31.06 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=34.7
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHH
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAM 186 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~ 186 (432)
++.|-|+|. ..+...|.+.|+. |....+.. ..+.|++.|.|.+.-. -..|+
T Consensus 24 ~l~V~nLp~---------~~te~~l~~~F~~--~Gi~~~~~----~~~~g~afV~f~~~~~-A~~A~ 74 (284)
T 3smz_A 24 KILIRGLPG---------DVTNQEVHDLLSD--YELKYCFV----DKYKGTAFVTLLNGEQ-AEAAI 74 (284)
T ss_dssp EEEEECCCT---------TCCHHHHHHHTTT--SCEEEEEE----ETTTTEEEEEESSHHH-HHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCEEEEE----ecCCCEEEEEeCCHHH-HHHHH
Confidence 577899986 3467889999999 65444443 3467899999976433 34444
No 383
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.80 E-value=25 Score=25.04 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
++.+|.|+.|+.. +.....|..|-..
T Consensus 6 ~~~~~~C~~C~k~---f~~~~~L~~H~~~ 31 (70)
T 1x5w_A 6 SGHPEKCSECSYS---CSSKAALRIHERI 31 (70)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHHGG
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHHHH
Confidence 4678999999743 3355667777543
No 384
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=29.29 E-value=17 Score=29.89 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=10.3
Q ss_pred CeeeccCCCCCCc
Q 047081 39 ETFTCPYCPKKRK 51 (432)
Q Consensus 39 ~~~~CP~C~~~kk 51 (432)
..+|||.|++-+-
T Consensus 22 ~~LRCpvCqnqsI 34 (90)
T 2kw0_A 22 EELRCPKCQNNSI 34 (90)
T ss_dssp HSSBCSCTTSCTT
T ss_pred HcCcCCCCCCCch
Confidence 4599999998654
No 385
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=29.26 E-value=17 Score=29.21 Aligned_cols=11 Identities=36% Similarity=1.062 Sum_probs=8.6
Q ss_pred CCeeeccCCCC
Q 047081 38 DETFTCPYCPK 48 (432)
Q Consensus 38 ~~~~~CP~C~~ 48 (432)
...|.||||++
T Consensus 25 ~~~y~Cp~CG~ 35 (83)
T 1vq8_Z 25 NEDHACPNCGE 35 (83)
T ss_dssp HSCEECSSSCC
T ss_pred cccCcCCCCCC
Confidence 45799999975
No 386
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.23 E-value=18 Score=23.53 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=18.0
Q ss_pred eecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 35 KISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 35 k~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
-..+.+|.|+.|+.. +..-..|..|-.
T Consensus 5 h~~~k~~~C~~C~k~---f~~~~~l~~H~~ 31 (45)
T 2epq_A 5 SSGEKPYSCPVCGLR---FKRKDRMSYHVR 31 (45)
T ss_dssp CSSCCSSEETTTTEE---CSCHHHHHHHHH
T ss_pred cCCCCCCcCCCCCcc---cCCHHHHHHHHH
Confidence 345778999999743 345556667743
No 387
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=29.04 E-value=18 Score=29.28 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=10.4
Q ss_pred CeeeccCCCCCCc
Q 047081 39 ETFTCPYCPKKRK 51 (432)
Q Consensus 39 ~~~~CP~C~~~kk 51 (432)
..+|||.|++-+-
T Consensus 25 ~~LRCp~Cqnqsi 37 (84)
T 2hl7_A 25 QELRCPKCQNQDI 37 (84)
T ss_dssp HHEECTTSSSCBT
T ss_pred HcCcCCCCCCCch
Confidence 4599999998654
No 388
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.94 E-value=25 Score=27.57 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=17.4
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.++.+|.|++|+. .+.....|..|-.
T Consensus 52 ~~~k~~~C~~C~k---~F~~~~~L~~H~~ 77 (85)
T 2lv2_A 52 HAAQVFPCKYCPA---TFYSSPGLTRHIN 77 (85)
T ss_dssp SCSSSEECTTSSC---EESSHHHHHHHHH
T ss_pred cCCCccCCCCCCC---EeCCHHHHHHhCc
Confidence 3567788888864 3456667777743
No 389
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=28.90 E-value=82 Score=24.42 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=24.1
Q ss_pred chhhHHHHHHhcCCCCcc-eeeecCCCCCceeEEEEeCCC
Q 047081 140 SGSKLKDELIRRGLHPTR-VQSLWNFRGHSGCALVQFNKN 178 (432)
Q Consensus 140 s~~~L~~~l~~~GF~p~k-v~~l~~~~gh~g~avv~F~~~ 178 (432)
+...++.+|..+||.|+. |+++...+-..|-.+|....+
T Consensus 23 ~~~~~~~rL~~lGl~pG~~v~V~~~~p~g~~pi~v~v~g~ 62 (85)
T 3mhx_A 23 ANDAIARRLRELGFVKGEEVRMVAKGPVGGEPLLVQVGFT 62 (85)
T ss_dssp SSCHHHHHHHHTTCCTTCEEEEEESCSSSCSCEEEEETTE
T ss_pred CCHHHHHHHHHCCCCCCCEEEEEEeCCCCCCCEEEEECCE
Confidence 345678889999999865 445543321114566666654
No 390
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=28.83 E-value=56 Score=24.70 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhHHh
Q 047081 383 VRKLAEDQKIEK--EELHNKIIQLEKQLDAKQ 412 (432)
Q Consensus 383 vlkL~e~hkreK--e~~~~kil~LEkqLd~kQ 412 (432)
.-=||=+|+||- .-++++|++||+++....
T Consensus 23 qqWlvydqqReayV~gll~~i~eleq~~~~a~ 54 (58)
T 3e1r_A 23 QQWLVYDQQREVYVKGLLAKIFELEKKTETAA 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344666666664 457889999999987654
No 391
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.74 E-value=29 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=14.7
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
++.+|.|+.|+.. +.....|..|
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H 26 (78)
T 2d9h_A 4 GSSGLQCEICGFT---CRQKASLNWH 26 (78)
T ss_dssp SCCCEECSSSCCE---ESSHHHHHHH
T ss_pred CCcCeECCCCCCe---eCCHHHHHHH
Confidence 4678999999753 3344455555
No 392
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.67 E-value=22 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=18.3
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
...+|.|+.|+. .+.....|..|-..
T Consensus 9 ~~k~~~C~~C~k---~f~~~~~L~~H~~~ 34 (48)
T 2epr_A 9 TRKQVACEICGK---IFRDVYHLNRHKLS 34 (48)
T ss_dssp CCCSEEETTTTE---EESSHHHHHHHGGG
T ss_pred CCcCeeCCCCCc---ccCCHHHHHHHHHh
Confidence 467899999974 24466678888543
No 393
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.67 E-value=34 Score=20.05 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=16.5
Q ss_pred Ceeecc--CCCCCCccccCcHHHHhhhhc
Q 047081 39 ETFTCP--YCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 39 ~~~~CP--~C~~~kk~~y~~~~LlqHA~g 65 (432)
.+|.|+ .|+. .+.....|..|-..
T Consensus 2 k~~~C~~~~C~k---~f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 2 RPYSCDHPGCDK---AFVRNHDLIRHKKS 27 (32)
T ss_dssp CSBCCCCTTCCC---CBSSSHHHHHHHGG
T ss_pred CCCcCcCCCCCC---ccCCHHHHHHHHHH
Confidence 579999 8974 34466778788543
No 394
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.62 E-value=16 Score=29.84 Aligned_cols=15 Identities=20% Similarity=0.738 Sum_probs=10.6
Q ss_pred CeeeccCCCCCCccc
Q 047081 39 ETFTCPYCPKKRKHD 53 (432)
Q Consensus 39 ~~~~CP~C~~~kk~~ 53 (432)
..|.||.|+..+.++
T Consensus 67 ddW~CPvCga~K~~F 81 (87)
T 1s24_A 67 DDWCCPDCGATKEDY 81 (87)
T ss_dssp TTCCCSSSCCCGGGE
T ss_pred CCCCCCCCCCCHHHh
Confidence 459999998655443
No 395
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.43 E-value=1.8e+02 Score=26.81 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 047081 238 LKTISGLVEEEARKKNLLVSNLTNTIEVKNKHLEE 272 (432)
Q Consensus 238 LKTi~ei~~e~~rk~~~lv~~L~~~i~~kn~~l~~ 272 (432)
|-.+...+++..+.++.||+.|.+++...++.|+.
T Consensus 4 ~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~ 38 (190)
T 4emc_A 4 LTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDT 38 (190)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999977777666653
No 396
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.34 E-value=28 Score=25.11 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=17.1
Q ss_pred ecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 36 ISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 36 ~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 13 ~~~~~~~C~~C~k~---f~~~~~l~~H~~ 38 (74)
T 2lce_A 13 HSDKPYKCDRCQAS---FRYKGNLASHKT 38 (74)
T ss_dssp CCCCSBCCTTSSCC---BSCHHHHHHHHH
T ss_pred CCCCCeECCCCCce---eCCHHHHHHHHH
Confidence 45678999999853 334555666643
No 397
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.33 E-value=66 Score=26.83 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=25.8
Q ss_pred ccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCc
Q 047081 138 GESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 138 G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w 179 (432)
+.+...|++.|+. |..+....+ ..| .||+.|.|...-
T Consensus 38 ~~te~~L~~~F~~--fG~v~~v~i--~~~-rgfaFV~f~~~~ 74 (114)
T 2cq2_A 38 GVSRNQLLPVLEK--CGLVDALLM--PPN-KPYSFARYRTTE 74 (114)
T ss_dssp TCCHHHHHHHHHH--HSCEEEEEC--CTT-CSCEEEEESSHH
T ss_pred CCCHHHHHHHHHh--cCCeEEEEE--eCC-CCEEEEEECCHH
Confidence 3467899999999 775433222 233 789999998753
No 398
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.13 E-value=1.4e+02 Score=30.33 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=17.3
Q ss_pred HHhHHhhhHHHHHhhhcccccc
Q 047081 407 QLDAKQALELEIERLRGTSKCD 428 (432)
Q Consensus 407 qLd~kQ~LELEi~qLkG~L~Vm 428 (432)
+-..+.+|--+|+.|+|.+.|.
T Consensus 43 ~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 43 SNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEE
Confidence 3456677888999999999885
No 399
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.98 E-value=26 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=18.1
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
++++|.|+.|+. .+.....|..|-..
T Consensus 5 ~~~~~~C~~C~~---~f~~~~~l~~H~~~ 30 (96)
T 2dmd_A 5 SSGPHKCEVCGK---CFSRKDKLKTHMRC 30 (96)
T ss_dssp CCCCCCBTTTTB---CCCCHHHHHHHGGG
T ss_pred CCcCeECCCCCC---ccCCHHHHHHHHHh
Confidence 467899999974 23456778888543
No 400
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.80 E-value=31 Score=25.83 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=17.9
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+..+|.|+.|+. .+.....|..|-..
T Consensus 4 ~~~~~~C~~C~~---~f~~~~~l~~H~~~ 29 (95)
T 2yt9_A 4 GSSGVACEICGK---IFRDVYHLNRHKLS 29 (95)
T ss_dssp CCSCEECSSSCC---EESSSHHHHHHHHH
T ss_pred CCCCeECCCCCC---ccCChHHHHHHHHh
Confidence 467899999974 24456677777543
No 401
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.61 E-value=32 Score=25.24 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=15.9
Q ss_pred CCeeeccCCCCCCccccC-cHHHHhh
Q 047081 38 DETFTCPYCPKKRKHDYL-YKDLLQH 62 (432)
Q Consensus 38 ~~~~~CP~C~~~kk~~y~-~~~LlqH 62 (432)
.++|.||-|... |. +.+|-.|
T Consensus 10 ~~~~~CPrCn~~----f~~~~sLr~H 31 (49)
T 2e72_A 10 GGRKICPRCNAQ----FRVTEALRGH 31 (49)
T ss_dssp SSCCCCTTTCCC----CSSHHHHHHH
T ss_pred CCceeCCccccc----ccchHHHHhh
Confidence 478999999853 64 6667777
No 402
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=26.83 E-value=24 Score=29.77 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecC-CC-CCceeEEEEeCCCccchHHHHhhHhh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWN-FR-GHSGCALVQFNKNWPGLDNAMAFEKS 191 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~-~~-gh~g~avv~F~~~w~Gf~~A~~fe~~ 191 (432)
-.+.|-|+|. ..+...|++.|+. |.+.....+.. .. .+.|++.|.|.+. ..-..|+.+...
T Consensus 14 ~~l~V~nLp~---------~~t~~~l~~~f~~--~g~~~~~~~~~~~~~~~~g~afV~f~~~-~~a~~A~~l~g~ 76 (175)
T 1fje_B 14 FNLFIGNLNP---------NKSVAELKVAISE--LFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALELTGL 76 (175)
T ss_dssp EEEEEECCCT---------TSCHHHHHHHHHH--HHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHHGGGE
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--hCCcceEEEEECCCCccccEEEEEECCH-HHHHHHHhcCCC
Confidence 3466889986 3467788888888 65433222222 22 3789999999865 344566665544
No 403
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=26.83 E-value=89 Score=27.58 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=35.6
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCCc-ceeeecCCC-C-CceeEEEEeCCCc
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPT-RVQSLWNFR-G-HSGCALVQFNKNW 179 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~-g-h~g~avv~F~~~w 179 (432)
++.|-|+|. ..+...|++.|+. |.++ .|+...++. | +.|++.|.|.+..
T Consensus 17 tlfVgnLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 17 SLYVGDLHP---------DVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--hCCEEEEEEecccCCCCccccccceeCCHH
Confidence 355889986 3467889999999 8664 566665543 3 7899999998643
No 404
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=26.80 E-value=32 Score=24.83 Aligned_cols=10 Identities=20% Similarity=0.803 Sum_probs=5.3
Q ss_pred CCeeeccCCC
Q 047081 38 DETFTCPYCP 47 (432)
Q Consensus 38 ~~~~~CP~C~ 47 (432)
+.+|.||.|+
T Consensus 55 ~~~~~C~~C~ 64 (82)
T 2kmk_A 55 EKPHKCQVCG 64 (82)
T ss_dssp CCCEECTTTS
T ss_pred CCCCcCCCcc
Confidence 3445555554
No 405
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=26.26 E-value=33 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=11.8
Q ss_pred CCeeeccCCCCCCccccCcHHHHhhh
Q 047081 38 DETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 38 ~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
..+|.||.|+. .+.....|..|-
T Consensus 60 ~~~~~C~~C~~---~f~~~~~l~~H~ 82 (90)
T 1a1h_A 60 EKPFACDICGR---KFARSDERKRHT 82 (90)
T ss_dssp CCCEECTTTCC---EESSHHHHHHHH
T ss_pred CCCccCCCCCc---hhCCHHHHHHHH
Confidence 44566666653 123444555553
No 406
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=26.19 E-value=37 Score=21.00 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=16.0
Q ss_pred cCCeeeccC--CCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPY--CPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~--C~~~kk~~y~~~~LlqHA 63 (432)
...+|.|++ |+. .+..-..|..|-
T Consensus 5 ~~k~~~C~~~~C~k---~f~~~~~L~~H~ 30 (37)
T 1va1_A 5 KKKQHICHIQGCGK---VYGKTSHLRAHL 30 (37)
T ss_dssp SCCCEECCSTTCCC---EESCHHHHHHHH
T ss_pred CCCCCCCCCCCCCC---ccCCHHHHHHHH
Confidence 457899996 974 234556677774
No 407
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.91 E-value=33 Score=22.30 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.5
Q ss_pred eeeccCCCCCCccccCcHHHHhh
Q 047081 40 TFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 40 ~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
.|.||.|.. +-.+++-|-+|
T Consensus 3 k~~CpvCk~---q~Pd~kt~~~H 22 (28)
T 2jvx_A 3 DFCCPKCQY---QAPDMDTLQIH 22 (28)
T ss_dssp CEECTTSSC---EESSHHHHHHH
T ss_pred cccCccccc---cCcChHHHHHH
Confidence 489999975 45678888777
No 408
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.85 E-value=31 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=22.1
Q ss_pred ceEeecCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 32 YNVKISDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 32 ~~vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
..+..+..+|.||.|+. .+.....|..|-..
T Consensus 20 ~~~~~~~~~h~C~~Cgk---~F~~~~~L~~H~~~ 50 (85)
T 2lv2_A 20 LGLSASAECHLCPVCGE---SFASKGAQERHLRL 50 (85)
T ss_dssp CSSCCCCTTEECTTSCC---EESSHHHHHHHHHT
T ss_pred CCCCCCCCCEECCCCCC---CcCcHHHHhhhhhh
Confidence 44566778899999984 34466778888654
No 409
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.83 E-value=33 Score=24.95 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=11.4
Q ss_pred CCeeeccCCCCCCccccCcHHHHhhh
Q 047081 38 DETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 38 ~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
..+|.||+|+. .+.....|..|-
T Consensus 44 ~~~~~C~~C~~---~f~~~~~L~~H~ 66 (77)
T 2cot_A 44 EKPYKCDECGK---AFIQRSHLIGHH 66 (77)
T ss_dssp SCSEECSSSCC---EESSHHHHHHHG
T ss_pred CcCeeCCCCCC---ccCCHHHHHHHH
Confidence 44566666653 122444455554
No 410
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=25.76 E-value=25 Score=29.04 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=13.6
Q ss_pred hhcCC-ceEeecCCeeeccCCCCC
Q 047081 27 LKSGN-YNVKISDETFTCPYCPKK 49 (432)
Q Consensus 27 Lk~g~-~~vk~~~~~~~CP~C~~~ 49 (432)
|.+|+ ..|+++|+ ||||++.
T Consensus 47 l~nGksVvVrVnDR---GP~~~gr 67 (95)
T 4avr_A 47 LDNRRSVVVRINDR---GPFRRGR 67 (95)
T ss_dssp TTTCCEEEEEEEEC---CCCSTTE
T ss_pred CCCCcEEEEEEccC---CCCCCCC
Confidence 55666 45666664 9999864
No 411
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.67 E-value=6e+02 Score=26.32 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=30.9
Q ss_pred CCCChHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHH
Q 047081 237 DLKTISGLVEEEAR---KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIEN 286 (432)
Q Consensus 237 dLKTi~ei~~e~~r---k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~ 286 (432)
+|..+.+++.+-++ ....+|..|...+..++..+..++...++.+..|++
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 34444455544444 334477778888888888888877766665554443
No 412
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=24.59 E-value=75 Score=22.29 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhh
Q 047081 391 KIEKEELHNKIIQLEKQLDAKQAL 414 (432)
Q Consensus 391 kreKe~~~~kil~LEkqLd~kQ~L 414 (432)
|.||+.++.+.-++|.++...-+|
T Consensus 16 K~ekd~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 16 KLDKENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcc
Confidence 689999999999999999877665
No 413
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.54 E-value=23 Score=28.71 Aligned_cols=12 Identities=42% Similarity=1.046 Sum_probs=9.2
Q ss_pred CCeeeccCCCCC
Q 047081 38 DETFTCPYCPKK 49 (432)
Q Consensus 38 ~~~~~CP~C~~~ 49 (432)
-..|.||||...
T Consensus 33 ~~ky~CpfCGk~ 44 (83)
T 3j21_i 33 RQKHTCPVCGRK 44 (83)
T ss_dssp HSCBCCSSSCSS
T ss_pred hcccCCCCCCCc
Confidence 346999999754
No 414
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.29 E-value=89 Score=26.27 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=30.4
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCcee-EEEEeCCCc
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGC-ALVQFNKNW 179 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~-avv~F~~~w 179 (432)
+.|-|++. ..+...|.+.|+. |..+.-..+... +|+ |.|+|...-
T Consensus 28 l~V~NL~~---------~vt~~~L~~~Fs~--yG~V~~v~i~~~---~Gf~aFVef~~~~ 73 (124)
T 2e5i_A 28 LSIQNPLY---------PITVDVLYTVCNP--VGKVQRIVIFKR---NGIQAMVEFESVL 73 (124)
T ss_dssp EEEESCCS---------CCCHHHHHHHHTT--TSCEEEEEEEES---SSEEEEEEESSHH
T ss_pred EEEcCcCC---------CCCHHHHHHHHHh--cCCEEEEEEEeC---CCCEEEEEECCHH
Confidence 34678875 2356789999999 887553334433 385 999997643
No 415
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=24.24 E-value=37 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=13.2
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
+..+|.||.|+. .+.....|..|-
T Consensus 62 ~~~~~~C~~C~~---~f~~~~~l~~H~ 85 (89)
T 2wbs_A 62 GHRPFQCQKCDR---AFSRSDHLALHM 85 (89)
T ss_dssp CCCCEECSSSSC---EESSHHHHHHHG
T ss_pred CCCCccCCCCCc---ccCCHHHHHHHH
Confidence 345677777753 233455566663
No 416
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=23.82 E-value=88 Score=24.05 Aligned_cols=38 Identities=8% Similarity=-0.055 Sum_probs=23.6
Q ss_pred hhhHHHHHHhcCCCCcc-eeeecCCCCCceeEEEEeCCCc
Q 047081 141 GSKLKDELIRRGLHPTR-VQSLWNFRGHSGCALVQFNKNW 179 (432)
Q Consensus 141 ~~~L~~~l~~~GF~p~k-v~~l~~~~gh~g~avv~F~~~w 179 (432)
...++.+|..+||.|+. |+.+-..+ -.|-.+|..+.+-
T Consensus 21 ~~~~~~rL~~lGl~pG~~v~V~~~~p-~~gpi~v~v~g~~ 59 (81)
T 2k5l_A 21 TGALKRRIMDMGITRGCEIYIRKVAP-LGDPIQINVRGYE 59 (81)
T ss_dssp SSHHHHHHHHHTCCTTCEEEEEEECT-TSCCEEEEETTEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCC-CCCCEEEEECCEE
Confidence 35678889999999865 44444322 1245666665543
No 417
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=23.82 E-value=71 Score=29.28 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=35.9
Q ss_pred ceEEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 119 WIGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 119 wmgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
..+.|-|+|. ..+...|.+.|+. |.++.-..+- -..|++.|.|.+.-. -..|+.
T Consensus 23 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~---~~kg~afV~f~~~~~-A~~A~~ 76 (261)
T 3sde_A 23 CRLFVGNLPT---------DITEEDFKRLFER--YGEPSEVFIN---RDRGFGFIRLESRTL-AEIAKA 76 (261)
T ss_dssp GEEEEESCCT---------TCCHHHHHHHTGG--GCCCSEEEEE---TTTTEEEEECSSHHH-HHHHHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEe---CCCcEEEEEECCHHH-HHHHHH
Confidence 3567889986 3477889999999 7764433332 236899999986433 334443
No 418
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=23.72 E-value=25 Score=31.82 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=13.6
Q ss_pred eEe-ecCCeeeccCCCCC
Q 047081 33 NVK-ISDETFTCPYCPKK 49 (432)
Q Consensus 33 ~vk-~~~~~~~CP~C~~~ 49 (432)
+|- .++++|+||.|...
T Consensus 51 KV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 51 SVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp CEEEETTTEEEETTTTEE
T ss_pred EeeeCCCCeEECCCCCCC
Confidence 443 78999999999865
No 419
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.64 E-value=42 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=19.0
Q ss_pred ceEeecCCeeeccCCCCCCccccCcHHHHhhh
Q 047081 32 YNVKISDETFTCPYCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 32 ~~vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA 63 (432)
..+-....+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~h~~~~~~~C~~C~~~---f~~~~~l~~H~ 36 (107)
T 1wjp_A 8 ASPVENKEVYQCRLCNAK---LSSLLEQGSHE 36 (107)
T ss_dssp CCCCCCCCCCBCTTTCCB---CSSHHHHHHHH
T ss_pred CcccCCCcCeECCCCCCc---cCCHHHHHHHH
Confidence 345556788999999753 33555666663
No 420
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=23.30 E-value=45 Score=19.40 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=15.6
Q ss_pred eeecc--CCCCCCccccCcHHHHhhhhc
Q 047081 40 TFTCP--YCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 40 ~~~CP--~C~~~kk~~y~~~~LlqHA~g 65 (432)
+|.|+ .|+. .+.....|..|-..
T Consensus 2 p~~C~~~~C~k---~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 2 PFMCTWSYCGK---RFTRSDELQRHKRT 26 (31)
T ss_dssp CCBCCSTTCCC---BCSSHHHHHHHHTT
T ss_pred CcCCcCCCCCc---ccCCHhHHHHHHHH
Confidence 68998 8974 24456678888543
No 421
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.30 E-value=46 Score=21.99 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=17.0
Q ss_pred EeecCCeeecc--CCCCCCccccCcHHHHhhh
Q 047081 34 VKISDETFTCP--YCPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 34 vk~~~~~~~CP--~C~~~kk~~y~~~~LlqHA 63 (432)
+-.++.+|.|+ .|+.. +..-..|..|-
T Consensus 12 ~H~~~k~~~C~~~~C~k~---F~~~~~L~~H~ 40 (47)
T 1ncs_A 12 KEMPDKTFECLFPGCTKT---FKRRYNIRSHI 40 (47)
T ss_dssp EEETTTEEECCCTTCCCE---ECSSSSHHHHH
T ss_pred ccCCCCCeECCCCCCCCc---cCCHHHHHHHH
Confidence 45678899996 59753 33444566663
No 422
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.29 E-value=26 Score=27.68 Aligned_cols=12 Identities=33% Similarity=1.071 Sum_probs=9.1
Q ss_pred CCeeeccCCCCC
Q 047081 38 DETFTCPYCPKK 49 (432)
Q Consensus 38 ~~~~~CP~C~~~ 49 (432)
...|.||||...
T Consensus 24 ~~ky~C~fCgk~ 35 (72)
T 3jyw_9 24 HARYDCSFCGKK 35 (72)
T ss_dssp HSCBCCSSCCSS
T ss_pred ccCccCCCCCCc
Confidence 356999999744
No 423
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.25 E-value=39 Score=30.57 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=18.8
Q ss_pred hHHHHHHhhhcCCceEeecCCeeeccCCC
Q 047081 19 YEDRSYEKLKSGNYNVKISDETFTCPYCP 47 (432)
Q Consensus 19 y~~~~Y~~Lk~g~~~vk~~~~~~~CP~C~ 47 (432)
...+.-..|++|+.-.+.....|.||.|+
T Consensus 134 ~~~~~l~~l~~~~~~~~~~~~~~~C~~CG 162 (191)
T 1lko_A 134 RFLDFARNIKEGRVFLREQATKWRCRNCG 162 (191)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEEEEETTTC
T ss_pred HHHHHHHhhhcccccccCCCceEEECCCC
Confidence 44555667788874223334579999996
No 424
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.03 E-value=41 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=18.9
Q ss_pred EeecCCeeeccCCCCCCccccCcHHHHhhhh
Q 047081 34 VKISDETFTCPYCPKKRKHDYLYKDLLQHAS 64 (432)
Q Consensus 34 vk~~~~~~~CP~C~~~kk~~y~~~~LlqHA~ 64 (432)
+-..+.+|.|+.|+.. +.....|..|-.
T Consensus 9 ~H~~~k~~~C~~C~~~---f~~~~~l~~H~~ 36 (86)
T 1x6h_A 9 THTGEKPYACSHCDKT---FRQKQLLDMHFK 36 (86)
T ss_dssp TCCCCCCEECSSSSCE---ESSHHHHHHHHH
T ss_pred eecCCCCCcCCCCCCc---cCCHHHHHHHHH
Confidence 3456788999999753 345566777753
No 425
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.48 E-value=45 Score=20.43 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=15.8
Q ss_pred cCCeeeccC--CCCCCccccCcHHHHhhh
Q 047081 37 SDETFTCPY--CPKKRKHDYLYKDLLQHA 63 (432)
Q Consensus 37 ~~~~~~CP~--C~~~kk~~y~~~~LlqHA 63 (432)
++.+|.|++ |+.. +.....|..|-
T Consensus 3 ~~k~~~C~~~~C~k~---f~~~~~L~~H~ 28 (38)
T 1bhi_A 3 DDKPFLCTAPGCGQR---FTNEDHLAVHK 28 (38)
T ss_dssp TCCCEECCCTTTCCE---ESSHHHHHHHH
T ss_pred CCcceECCCCCCCcc---cCCHHHHHHHH
Confidence 457899996 9743 33455677774
No 426
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.46 E-value=4.3e+02 Score=23.87 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhH
Q 047081 305 IQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLAT 373 (432)
Q Consensus 305 mq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~ 373 (432)
|-..+-+-.+++|.+- +..||..+.+|..+..++++.-.+--.--..|.+++-+.+.-+.-++|..
T Consensus 13 ~k~~r~e~aek~~~~k---~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~ 78 (169)
T 3k29_A 13 IKKDRVDRAEKVVKEK---RRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKA 78 (169)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3344444555555544 44455555555555555555544443334455555555555555555433
No 427
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=22.35 E-value=91 Score=26.45 Aligned_cols=60 Identities=25% Similarity=0.252 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhc----CCCCc---ceeeecCCCCCceeEEEEeCCCccchHHHHhhHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRR----GLHPT---RVQSLWNFRGHSGCALVQFNKNWPGLDNAMAFEK 190 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~----GF~p~---kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~fe~ 190 (432)
.+.|-|+|. ..+...|.+.|+.- |+.+. .+...+. .-+.|++.|.|.+.- .-..|+.|..
T Consensus 6 ~l~V~nLp~---------~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~-~A~~Al~l~g 72 (198)
T 2yh0_A 6 RLYVGNIPF---------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVD-ETTQAMAFDG 72 (198)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSH-HHHHHGGGTT
T ss_pred EEEEcCCCC---------CCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHH-HHHHHHHhcC
Confidence 467889986 34678899999993 22111 2222221 235789999998743 3344554443
No 428
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.34 E-value=42 Score=25.95 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=10.9
Q ss_pred CCeeeccCCCCCCccccCcHHHHhh
Q 047081 38 DETFTCPYCPKKRKHDYLYKDLLQH 62 (432)
Q Consensus 38 ~~~~~CP~C~~~kk~~y~~~~LlqH 62 (432)
..+|.||+|+. .+.....|..|
T Consensus 63 ~~~~~C~~C~~---~f~~~~~l~~H 84 (110)
T 2csh_A 63 IKPYECNICAK---RFMWRDSFHRH 84 (110)
T ss_dssp CCCEECSSSCC---EESCHHHHHHH
T ss_pred CCCeeCCCCcc---hhcCHHHHHHH
Confidence 34566666653 23344455555
No 429
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=22.31 E-value=26 Score=28.85 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=9.1
Q ss_pred CCeeeccCCCCC
Q 047081 38 DETFTCPYCPKK 49 (432)
Q Consensus 38 ~~~~~CP~C~~~ 49 (432)
-..|.||||...
T Consensus 34 ~~ky~CpfCgk~ 45 (92)
T 3iz5_m 34 HSKYFCEFCGKF 45 (92)
T ss_dssp HSCBCCTTTCSS
T ss_pred hccccCcccCCC
Confidence 356899999754
No 430
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=22.23 E-value=99 Score=26.38 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=31.4
Q ss_pred EEEeccccccCCCCCccccchhhHHHHHHhcCCCCcceeeecCCCCCcee-EEEEeCCC
Q 047081 121 GIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHPTRVQSLWNFRGHSGC-ALVQFNKN 178 (432)
Q Consensus 121 gIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~gh~g~-avv~F~~~ 178 (432)
++|-|.+. -.+...|.+.|+. |.++.-..+... ..|+ |.|.|...
T Consensus 31 I~V~NL~~---------~vte~~L~~lFs~--yG~V~~V~i~~~--~~gfqAFVef~~~ 76 (130)
T 3zzy_A 31 IIVENLFY---------PVTLDVLHQIFSK--FGTVLKIITFTK--NNQFQALLQYADP 76 (130)
T ss_dssp EEEESCCS---------CCCHHHHHHHHTT--SSCEEEEEEEEE--TTEEEEEEEESCH
T ss_pred EEECCCCC---------CCCHHHHHHHHhC--cCCEEEEEEEcC--CCCcEEEEEECCH
Confidence 66889875 2367789999999 987554444432 2466 99999754
No 431
>1wvl_A DNA-binding proteins 7A/7B/7D, GCN4; leucine zipper, protein engineering, synchrotron radiation, thermophIle, X-RAY crystallography; 2.60A {Sulfolobus acidocaldarius} SCOP: b.34.13.1
Probab=22.22 E-value=84 Score=24.46 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=27.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047081 377 QKADDNVRKLAEDQKIEKEELHNKIIQLEKQL 408 (432)
Q Consensus 377 ~kade~vlkL~e~hkreKe~~~~kil~LEkqL 408 (432)
+.|-.++|...+++++||.-.+.++...|.+|
T Consensus 48 kdapkell~ml~k~~~ekkgvlkklravenel 79 (80)
T 1wvl_A 48 KDAPKELLDMLARAEREKKGVLKKLRAVENEL 79 (80)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccChHHHHHHHHHHHHHHhhHHHHHHHhhhcc
Confidence 44667788999999999999999998888776
No 432
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=22.11 E-value=43 Score=22.64 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=12.6
Q ss_pred hhcCCce-----EeecCCeeeccCCCC
Q 047081 27 LKSGNYN-----VKISDETFTCPYCPK 48 (432)
Q Consensus 27 Lk~g~~~-----vk~~~~~~~CP~C~~ 48 (432)
+++|++. |.|....+.|.+|..
T Consensus 3 ~~~G~W~C~~C~v~N~~~~~kC~aCet 29 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQNKADSTKCIACES 29 (34)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCC
T ss_pred CCCCceECCeeEeECccccCEEcccCC
Confidence 3556653 566667777777754
No 433
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.87 E-value=3.5e+02 Score=22.55 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHhhhHHHHHhhhcc
Q 047081 349 ENDRKALAEEIEKNAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLD----AKQALELEIERLRGT 424 (432)
Q Consensus 349 ~~er~kl~~e~~kn~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd----~kQ~LELEi~qLkG~ 424 (432)
+.+-..|...+......+..|.+-.---+-+-++.-.=-|+--.....+-+.|.-|-|.+| .+-.||..|+-|+.-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccc
Q 047081 425 SKCDE 429 (432)
Q Consensus 425 L~Vmk 429 (432)
|..+|
T Consensus 99 l~FLK 103 (119)
T 3ol1_A 99 IAFLK 103 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
No 434
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.81 E-value=6e+02 Score=25.30 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHHhhhccchhhHhH
Q 047081 314 QRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEKNAMRNSSLQLAT 373 (432)
Q Consensus 314 ~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~ 373 (432)
++|....+.|+..| .+|...+.+|+..-.....+-+.++ ++-|+.+-+-+||..
T Consensus 201 ~~~~~n~~~l~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 201 QRIMHNYDKLKSRI----SEIIDSRRRLEEDLKKQAAEYREID--KRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccChHHHHHHH
Confidence 44444444444443 3454445555433322222333333 333444444445544
No 435
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=21.75 E-value=44 Score=25.11 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=4.3
Q ss_pred CeeeccCCC
Q 047081 39 ETFTCPYCP 47 (432)
Q Consensus 39 ~~~~CP~C~ 47 (432)
.+|.|+.|+
T Consensus 74 ~~~~C~~C~ 82 (100)
T 2ebt_A 74 KPFQCGVCN 82 (100)
T ss_dssp CSCBCSSSC
T ss_pred CCeECCCCc
Confidence 345555554
No 436
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=21.60 E-value=46 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=21.6
Q ss_pred ccccchhhHHHHHHhcCCCCcceee
Q 047081 136 SVGESGSKLKDELIRRGLHPTRVQS 160 (432)
Q Consensus 136 ~~G~s~~~L~~~l~~~GF~p~kv~~ 160 (432)
+...|+.+|+.+|...|+.|+.|.+
T Consensus 3 v~~Lsd~eLr~~L~~~G~~~GPIt~ 27 (53)
T 1jei_A 3 YADLSDTELTTLLRRYNIPHGPVVG 27 (53)
T ss_dssp TTTCCHHHHHHHHSSSCCSCCCCCS
T ss_pred HHHcCHHHHHHHHHHhCCCCCCCCc
Confidence 5567999999999999999988765
No 437
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=21.52 E-value=46 Score=24.78 Aligned_cols=26 Identities=15% Similarity=0.338 Sum_probs=17.9
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+..+|.||.|+. .+.....|..|-..
T Consensus 28 ~~~~~~C~~C~k---~f~~~~~L~~H~~~ 53 (88)
T 1llm_C 28 GEKPFACDICGR---KFARSDERKRHRDI 53 (88)
T ss_dssp CCCCEECTTTCC---EESSHHHHHHHHHH
T ss_pred CCCCccCCCCCC---ccCCHHHHHHHHHH
Confidence 456899999974 24456677788543
No 438
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.20 E-value=6.6e+02 Score=25.52 Aligned_cols=77 Identities=8% Similarity=0.179 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 047081 251 KKNLLVSNLTNTIEVKNKHLEEMKERCIETSNFIENLMEEKD-RLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEA 329 (432)
Q Consensus 251 k~~~lv~~L~~~i~~kn~~l~~lE~k~~~~s~sL~~~meek~-~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~ 329 (432)
..++.+.++.+.+....+..++.+-.|++.+.-|++-.+.-+ ++..... .|+-||.. ++.+.-++.+|...++.
T Consensus 85 ~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~----l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 85 DSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKN----VRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 567778888888888888888999999999888888766533 3333333 55555543 34445566667776655
Q ss_pred HHH
Q 047081 330 QKK 332 (432)
Q Consensus 330 k~~ 332 (432)
.++
T Consensus 160 c~~ 162 (390)
T 1deq_A 160 KIR 162 (390)
T ss_pred Hhc
Confidence 544
No 439
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=21.05 E-value=1.1e+02 Score=26.09 Aligned_cols=54 Identities=24% Similarity=0.143 Sum_probs=35.2
Q ss_pred eEEEeccccccCCCCCccccchhhHHHHHHhcCCCC-cceeeecCCCCCceeEEEEeCCCccchHHHHh
Q 047081 120 IGIVVNIPTRRGQDGRSVGESGSKLKDELIRRGLHP-TRVQSLWNFRGHSGCALVQFNKNWPGLDNAMA 187 (432)
Q Consensus 120 mgIi~N~~~~~~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~gh~g~avv~F~~~w~Gf~~A~~ 187 (432)
++.|-|+|. . ..+...|.+.|+. |.+ ..++..... .|++.|.|.+.- .-..|+.
T Consensus 5 ~l~v~nlp~-~-------~~~~~~l~~~F~~--~G~i~~v~i~~~~---~g~afV~f~~~~-~a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNP-E-------RVTPQSLFILFGV--YGDVQRVKILFNK---KENALVQMADGN-QAQLAMS 59 (198)
T ss_dssp EEEEECCCS-S-------SCCHHHHHHHHHT--TCCCSEEECSTTC---SSCCEEECTTTH-HHHHHHH
T ss_pred EEEEeCCCc-c-------cCCHHHHHHHHHh--cCCEEEEEEEeCC---CCEEEEEECCHH-HHHHHHH
Confidence 466788873 0 1356889999999 765 344454443 679999998643 3444554
No 440
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=21.02 E-value=76 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=25.2
Q ss_pred hhHHHHHHhhhcCCc------eEeecCCeeeccCCCC
Q 047081 18 DYEDRSYEKLKSGNY------NVKISDETFTCPYCPK 48 (432)
Q Consensus 18 ~y~~~~Y~~Lk~g~~------~vk~~~~~~~CP~C~~ 48 (432)
+.....|..++.|++ .|......|+|+-|+.
T Consensus 42 e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~~CG~ 78 (139)
T 3a43_A 42 DIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNY 78 (139)
T ss_dssp HHHHHHHHHHHTTSTTTTCEEEEEEECCEEEETTTCC
T ss_pred HHHHHHHHHHHcCCcccCCEEEEEecCCcEECCCCCC
Confidence 466788899999885 5667788999999964
No 441
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.94 E-value=28 Score=28.69 Aligned_cols=11 Identities=36% Similarity=1.156 Sum_probs=8.6
Q ss_pred CeeeccCCCCC
Q 047081 39 ETFTCPYCPKK 49 (432)
Q Consensus 39 ~~~~CP~C~~~ 49 (432)
..|.||||...
T Consensus 35 ~ky~CpfCgk~ 45 (92)
T 3izc_m 35 ARYDCSFCGKK 45 (92)
T ss_dssp SCCCCSSSCSS
T ss_pred cCCcCCCCCCc
Confidence 56999999743
No 442
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.81 E-value=47 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCccccCcHHHHhhhhc
Q 047081 37 SDETFTCPYCPKKRKHDYLYKDLLQHASG 65 (432)
Q Consensus 37 ~~~~~~CP~C~~~kk~~y~~~~LlqHA~g 65 (432)
+.++|.|++|+. .+. ...|..|-..
T Consensus 7 ~~~~~~C~~C~k---~f~-~~~L~~H~~~ 31 (66)
T 2eod_A 7 GKRTQPCTYCTK---EFV-FDTIQSHQYQ 31 (66)
T ss_dssp CCCEEECSSSCC---EEE-HHHHHHHHHH
T ss_pred CCCCeeccccCC---ccC-HHHHHHHHHH
Confidence 467899999964 233 6667788543
No 443
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.77 E-value=26 Score=25.58 Aligned_cols=8 Identities=50% Similarity=1.481 Sum_probs=6.8
Q ss_pred eeeccCCC
Q 047081 40 TFTCPYCP 47 (432)
Q Consensus 40 ~~~CP~C~ 47 (432)
..+||+|+
T Consensus 23 ~IrCpyCG 30 (48)
T 4ayb_P 23 GVRCPYCG 30 (48)
T ss_dssp SSCCTTTC
T ss_pred CcccCccC
Confidence 47999997
No 444
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.77 E-value=1.8e+02 Score=19.94 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=14.7
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 047081 316 IFTEHENFKLQLEAQKKELE 335 (432)
Q Consensus 316 I~~e~ekl~~eLe~k~~eL~ 335 (432)
.+.+|++|..+|+.|-.++-
T Consensus 5 ~L~ENekLhk~ie~KdeeIa 24 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIA 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887666544
No 445
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.73 E-value=31 Score=29.00 Aligned_cols=11 Identities=36% Similarity=1.265 Sum_probs=8.5
Q ss_pred CCeeeccCCCC
Q 047081 38 DETFTCPYCPK 48 (432)
Q Consensus 38 ~~~~~CP~C~~ 48 (432)
-..|.||||..
T Consensus 34 ~aky~CpfCgk 44 (103)
T 4a17_Y 34 HAKYGCPFCGK 44 (103)
T ss_dssp HSCEECTTTCC
T ss_pred hcCCCCCCCCC
Confidence 35799999963
No 446
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.70 E-value=80 Score=26.24 Aligned_cols=31 Identities=10% Similarity=0.306 Sum_probs=24.3
Q ss_pred hhHHHHHHhhhcCC-c------eEeecCCeeeccCCCC
Q 047081 18 DYEDRSYEKLKSGN-Y------NVKISDETFTCPYCPK 48 (432)
Q Consensus 18 ~y~~~~Y~~Lk~g~-~------~vk~~~~~~~CP~C~~ 48 (432)
++....|+.++.|+ + .|......|+|+-|+.
T Consensus 44 e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~~CG~ 81 (119)
T 2kdx_A 44 SLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSH 81 (119)
T ss_dssp HHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSSC
T ss_pred HHHHHHHHHHHhCChhhcCcEEEEEeccceEEcCCCCC
Confidence 57778889999998 4 5667778899999864
No 447
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=20.57 E-value=99 Score=24.07 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=22.8
Q ss_pred hhhHHHHHHhcCCCCcc-eeeecCC-CCCceeEEEEeCCC
Q 047081 141 GSKLKDELIRRGLHPTR-VQSLWNF-RGHSGCALVQFNKN 178 (432)
Q Consensus 141 ~~~L~~~l~~~GF~p~k-v~~l~~~-~gh~g~avv~F~~~ 178 (432)
...++.+|..+||.|+. |+++-.. .| |-.+|..+.+
T Consensus 24 ~~~~~~rL~~mGl~pG~~V~V~~~~p~~--gpi~v~v~g~ 61 (86)
T 2k4y_A 24 ESKVRRKIMDMGIVRGTEIYIEGKAPMG--DPIALRLRGY 61 (86)
T ss_dssp TSSHHHHHHHHTCCTTCEEEEEEECTTS--CSEEEEETTE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCC--CCEEEEECCE
Confidence 34578889999999865 4444432 23 4556666544
No 448
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.47 E-value=66 Score=21.71 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=17.8
Q ss_pred HHHHHhHHhhhHHHHHhhhccc
Q 047081 404 LEKQLDAKQALELEIERLRGTS 425 (432)
Q Consensus 404 LEkqLd~kQ~LELEi~qLkG~L 425 (432)
.|.=|..++.||-|+.+|++-|
T Consensus 9 vEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3455778999999999999865
No 449
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.33 E-value=5e+02 Score=23.76 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhh
Q 047081 255 LVSNLTNTIEVKNKHLEEMKERCIET 280 (432)
Q Consensus 255 lv~~L~~~i~~kn~~l~~lE~k~~~~ 280 (432)
|=+-|-..|+...+...+|..+++..
T Consensus 43 LE~ELE~eL~~~Ek~~~~L~~~~~~L 68 (189)
T 2v71_A 43 LEAELEAQLVQAEQRNRDLQADNQRL 68 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444443
No 450
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.14 E-value=2e+02 Score=21.23 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcH
Q 047081 315 RIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNE 349 (432)
Q Consensus 315 ~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~ 349 (432)
.+....|.|+.|=-.-++||+.-+.+|.|++..+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets 41 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhh
Confidence 34566788888888889999999999999886443
No 451
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.11 E-value=1.4e+02 Score=31.53 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHHhhcHHHHHHHHHHHHH
Q 047081 282 NFIENLMEEKDRLVQGYNEEIKKIQLSAQYHFQRIFTEHENFKLQLEAQKKELEFLGVDLQKREAKNENDRKALAEEIEK 361 (432)
Q Consensus 282 ~sL~~~meek~~l~~~~neEi~kmq~~a~~~~~~I~~e~ekl~~eLe~k~~eL~~r~~eL~k~~~~~~~er~kl~~e~~k 361 (432)
....+.-.|-..-...+.+|++..+..-.+..+.+. .|+.+.+..+.-+..|++.....+.+.+.|..+..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~ 402 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMIL--------RLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNM 402 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhccchhhHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 047081 362 NAMRNSSLQLATLEQQKADDNVRKLAEDQKIEKEELHNKIIQLEKQLDAKQA 413 (432)
Q Consensus 362 n~~~~~~l~lA~~EQ~kade~vlkL~e~hkreKe~~~~kil~LEkqLd~kQ~ 413 (432)
.+.....|.--..|-+..-..+..-++....|.+.+..++..-...+...+.
T Consensus 403 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~ 454 (575)
T 2i1j_A 403 EAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAA 454 (575)
T ss_dssp ---------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=20.06 E-value=1.7e+02 Score=23.01 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q 047081 391 KIEKEELHNKIIQLEKQLDAKQ 412 (432)
Q Consensus 391 kreKe~~~~kil~LEkqLd~kQ 412 (432)
..|++++.+++-.++.++....
T Consensus 10 ~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 10 ANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
Done!