BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047082
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 19 CGKPTFSLGSDGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQS 76
G DGNLV +G + T KG V +GN+V++ + +W S
Sbjct: 163 AGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS 220
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 29 DGNLVLAEADGTVVCQSNTANKGVVGFKLLPNGNMVLHDSKGNFIWQSF 77
DGNLV+ A V+ S+T +L NG++ + D K +W F
Sbjct: 204 DGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKP--VWARF 250
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 24 FSLGSDGNLVLAEADGTVVCQSNTANKGVVGFK--LLPNGNMVLHDSKGNFIWQSFDCPT 81
F + D NLVL + T V SNT G G K L +GN V++D++G +W S
Sbjct: 23 FIMQEDCNLVLYDHS-TSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRG 81
Query: 82 DTLLVGQSLLSVKENVSFVM 101
+ G +L ++E+ + V+
Sbjct: 82 N----GNYVLVLQEDGNVVI 97
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 24 FSLGSDGNLVLAEADGTVVCQSNTANKGVVGFK--LLPNGNMVLHDSKGNFIWQSFDCPT 81
F + D NLVL + T V SNT G G K L +GN V++D++G +W S
Sbjct: 23 FIMQEDCNLVLYDHS-TSVWASNTGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRG 81
Query: 82 DTLLVGQSLLSVKENVSFVM 101
+ G +L ++E+ + V+
Sbjct: 82 N----GNYVLVLQEDGNVVI 97
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 20 GKPTFSLGSDGNLVLAEADGTVVCQSNTANKGV-VGFKLLPNGNMVLHDSKGNFIWQSFD 78
G T ++ + NLV + +G + SNT +G LL +GN+V++D N +W S
Sbjct: 19 GAYTLTIQNKCNLVKYQ-NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGSA- 76
Query: 79 CPTDTLLVGQSLLSVKENVSFVM 101
C D G+ L ++++ FV+
Sbjct: 77 CWGDN---GKYALVLQKDGRFVI 96
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 20 GKPTFSLGSDGNLVLAEADGTVVCQSNTANKGV-VGFKLLPNGNMVLHDSKGNFIWQSFD 78
G T ++ + NLV + +G + SNT +G LL +GN+V++D N +W S
Sbjct: 20 GAYTLTIQNKCNLVKYQ-NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGSA- 77
Query: 79 CPTDTLLVGQSLLSVKENVSFVM 101
C D G+ L ++++ FV+
Sbjct: 78 CWGDN---GKYALVLQKDGRFVI 97
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 5 KNSCSL------NSIFASPVCGKPT---FSLGSDGNLVLAEADGTVVCQSNTANKGVVGF 55
+N C+L +++AS GK + + +DGNLV+ + + G
Sbjct: 26 QNDCNLVLYDNNRAVWASGTNGKASGCVLKMQNDGNLVIYSGSRAIWASNTNRQNGNYYL 85
Query: 56 KLLPNGNMVLHDSKGNFIWQS 76
L + N+V++D+ N IW +
Sbjct: 86 ILQRDRNVVIYDNSNNAIWAT 106
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 54 GFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGS 113
G K L + ++ D K + I DC L G L+ SF+MEP+ T YY+
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG---LARTAGTSFMMEPEVVTRYYR-- 192
Query: 114 NSPQPVL 120
+P+ +L
Sbjct: 193 -APEVIL 198
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 24 FSLGSDGNLVLAEADGTVVCQSNTANKGVVGFK-----LLPNGNMVLHDSKGNFIWQSFD 78
F + D NLVL + T V SNT G++G K L +GN V++D++G +W S
Sbjct: 23 FIMQEDCNLVLYDHS-TSVWASNT---GILGKKGCRAVLQSDGNFVVYDAEGRSLWASHS 78
Query: 79 CPTDTLLVGQSLLSVKENVSFVM 101
+ G +L ++E+ + V+
Sbjct: 79 VRGN----GNYVLVLQEDGNVVI 97
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 54 GFKLLPNGNMVLHDSKGNFIWQSFDCPTDTLLVGQSLLSVKENVSFVMEPKRFTLYYKGS 113
G K L + ++ D K + I DC L G L+ SF+MEP+ T YY+
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG---LARTAGTSFMMEPEVVTRYYR-- 192
Query: 114 NSPQPVL 120
+P+ +L
Sbjct: 193 -APEVIL 198
>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 5 KNSCSL------NSIFASPVCGKPT---FSLGSDGNLVLAEADGTVVCQSNTANKGVVGF 55
+N C+L +++AS GK + + DGNLV+ + + G
Sbjct: 26 QNDCNLVLYDNNRAVWASGTNGKASNCILKMQRDGNLVIYSGSRAMWASNTNRQDGNYYL 85
Query: 56 KLLPNGNMVLHDSKGNFIWQS 76
L + N+V++D+ N IW S
Sbjct: 86 ILQRDRNVVIYDNSNNAIWAS 106
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 208 VACPTEKGLLGWSKEWVNH 226
+ACP+ G+ WS EW+ H
Sbjct: 83 LACPSSDGVRFWSHEWLKH 101
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 29 DGNLVLAEADGTVVCQSNTANKGVVGFK--LLPNGNMVLHDSKGNFIWQSFDCPTDTLLV 86
D NLVL + T V SNT G G K L +GN V++D++G +W S +
Sbjct: 28 DCNLVLYDH-STAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGN---- 82
Query: 87 GQSLLSVKENVSFVM 101
G +L ++E+ + V+
Sbjct: 83 GNYVLVLQEDGNVVI 97
>pdb|4F1I|A Chain A, Crystal Structure Of Semet Tdp2 From Caenorhabditis
Elegans
Length = 362
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 171 GMHGNLKIYTHYDKVDSQPTQLPERCSKLGVCDD 204
G G LK++ ++S P+RC++ G C D
Sbjct: 219 GSIGGLKVFLLNTHLESTREHRPQRCAQFGFCXD 252
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 29 DGNLVLAEADGTVVCQSNTANKGVVGFK--LLPNGNMVLHDSKGNFIWQSFDCPTDTLLV 86
D NLVL + T V SNT G G K L +GN V++D++G +W S +
Sbjct: 28 DCNLVLYDH-STAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGN---- 82
Query: 87 GQSLLSVKENVSFVM 101
G +L ++E+ + V+
Sbjct: 83 GNYVLVLQEDGNVVI 97
>pdb|1EY2|A Chain A, Human Homogentisate Dioxygenase With Fe(ii)
pdb|1EYB|A Chain A, Crystal Structure Of Apo Human Homogentisate Dioxygenase
Length = 471
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 161 YNIRSSFLRLGMHGNLKIYTHYDKVDSQPTQL 192
YN FL + GNL IYT + K QP ++
Sbjct: 174 YNSDGDFLIVPQKGNLLIYTEFGKXLVQPNEI 205
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 29 DGNLVLAEADGTVVCQSNTANKGVVGFK--LLPNGNMVLHDSKGNFIWQSFDCPTDTLLV 86
D NLVL + T V +NT G G K L +GN V++D++G +W S +
Sbjct: 28 DCNLVLYDH-STAVWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGN---- 82
Query: 87 GQSLLSVKENVSFVM 101
G +L ++E+ + V+
Sbjct: 83 GNYVLVLQEDGNVVI 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,729,295
Number of Sequences: 62578
Number of extensions: 373177
Number of successful extensions: 696
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 36
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)