Query 047084
Match_columns 437
No_of_seqs 392 out of 3558
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14111 DUF4283: Domain of un 99.9 1.3E-26 2.8E-31 198.6 9.0 151 198-348 2-153 (153)
2 KOG4194 Membrane glycoprotein 99.9 3.6E-24 7.8E-29 206.4 -4.8 296 2-302 153-483 (873)
3 KOG0444 Cytoskeletal regulator 99.8 1.2E-22 2.6E-27 197.3 -3.9 241 2-252 82-373 (1255)
4 PLN00113 leucine-rich repeat r 99.8 2.6E-20 5.7E-25 205.1 9.0 249 1-255 143-418 (968)
5 KOG4194 Membrane glycoprotein 99.8 3.1E-20 6.8E-25 179.4 4.8 245 1-253 81-353 (873)
6 PLN00113 leucine-rich repeat r 99.8 6.4E-20 1.4E-24 202.0 6.9 251 1-256 167-467 (968)
7 KOG0617 Ras suppressor protein 99.8 5.5E-21 1.2E-25 158.0 -5.1 131 3-154 38-168 (264)
8 KOG0444 Cytoskeletal regulator 99.7 8E-20 1.7E-24 177.8 -4.2 244 3-255 37-305 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 3E-19 6.4E-24 165.8 -4.6 225 2-236 72-316 (565)
10 PRK15387 E3 ubiquitin-protein 99.7 2.1E-17 4.6E-22 171.8 8.2 233 2-255 205-459 (788)
11 KOG0472 Leucine-rich repeat pr 99.7 1.2E-18 2.6E-23 161.8 -6.4 241 2-253 49-309 (565)
12 KOG0617 Ras suppressor protein 99.7 1.8E-17 3.9E-22 137.3 0.7 154 16-190 28-189 (264)
13 KOG4237 Extracellular matrix p 99.6 5.6E-17 1.2E-21 150.5 -0.4 259 4-289 52-375 (498)
14 PRK15370 E3 ubiquitin-protein 99.6 1.7E-15 3.7E-20 158.4 6.1 213 3-254 204-428 (754)
15 PRK15370 E3 ubiquitin-protein 99.5 1.2E-14 2.6E-19 152.2 7.5 170 1-187 223-401 (754)
16 PRK15387 E3 ubiquitin-protein 99.5 8.9E-15 1.9E-19 152.4 4.7 215 1-236 225-464 (788)
17 PF14392 zf-CCHC_4: Zinc knuck 99.5 2.8E-14 6.1E-19 95.5 3.3 44 349-392 1-49 (49)
18 KOG4237 Extracellular matrix p 99.5 5.9E-15 1.3E-19 137.2 -0.4 191 2-197 71-345 (498)
19 KOG0618 Serine/threonine phosp 99.5 1.4E-14 3E-19 147.6 1.8 245 1-255 48-324 (1081)
20 KOG0618 Serine/threonine phosp 99.5 5.9E-15 1.3E-19 150.3 -1.5 179 2-187 245-443 (1081)
21 KOG0532 Leucine-rich repeat (L 99.4 5.8E-14 1.3E-18 136.2 -1.8 144 3-155 80-230 (722)
22 KOG0532 Leucine-rich repeat (L 99.3 2E-13 4.4E-18 132.5 -2.9 145 3-155 103-253 (722)
23 PLN03210 Resistant to P. syrin 99.3 6.2E-12 1.4E-16 140.0 8.0 75 2-77 615-691 (1153)
24 PLN03210 Resistant to P. syrin 99.2 3.8E-11 8.1E-16 133.8 9.2 147 13-167 580-737 (1153)
25 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.8E-16 105.0 4.3 101 1-107 22-124 (175)
26 COG4886 Leucine-rich repeat (L 99.1 2.5E-11 5.3E-16 120.4 4.5 165 17-187 112-290 (394)
27 PF14580 LRR_9: Leucine-rich r 99.1 3.1E-11 6.7E-16 104.1 2.7 122 4-148 3-126 (175)
28 cd00116 LRR_RI Leucine-rich re 99.0 2.4E-11 5.2E-16 116.8 -0.5 234 2-254 2-291 (319)
29 KOG1259 Nischarin, modulator o 99.0 4.3E-11 9.2E-16 108.1 0.5 123 20-149 283-413 (490)
30 cd00116 LRR_RI Leucine-rich re 99.0 2.5E-10 5.4E-15 109.7 5.7 236 2-253 27-319 (319)
31 COG4886 Leucine-rich repeat (L 99.0 1.3E-10 2.8E-15 115.3 2.5 160 1-167 119-289 (394)
32 PLN03150 hypothetical protein; 98.9 1.7E-09 3.6E-14 112.9 8.0 111 22-152 419-532 (623)
33 PLN03150 hypothetical protein; 98.8 8E-09 1.7E-13 107.8 8.8 92 45-156 419-511 (623)
34 PF13855 LRR_8: Leucine rich r 98.8 4.4E-09 9.6E-14 74.6 3.3 58 22-79 2-61 (61)
35 KOG1259 Nischarin, modulator o 98.7 6.7E-09 1.5E-13 94.1 2.2 102 39-148 279-387 (490)
36 KOG4658 Apoptotic ATPase [Sign 98.6 3.6E-08 7.7E-13 105.5 5.9 100 2-106 549-652 (889)
37 PF13855 LRR_8: Leucine rich r 98.6 2.6E-08 5.6E-13 70.6 3.2 59 44-107 1-60 (61)
38 KOG0531 Protein phosphatase 1, 98.5 2E-08 4.3E-13 100.2 0.2 176 3-187 77-268 (414)
39 KOG4579 Leucine-rich repeat (L 98.5 7.2E-09 1.6E-13 83.4 -2.5 60 21-80 53-113 (177)
40 KOG0531 Protein phosphatase 1, 98.5 5.1E-08 1.1E-12 97.2 1.9 181 19-207 70-270 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.4 2.1E-07 4.6E-12 99.7 4.4 112 2-120 527-647 (889)
42 KOG1859 Leucine-rich repeat pr 98.4 6.9E-09 1.5E-13 104.1 -6.9 96 3-107 169-265 (1096)
43 KOG3207 Beta-tubulin folding c 98.3 2.8E-07 6E-12 87.9 3.3 164 18-186 118-313 (505)
44 KOG3207 Beta-tubulin folding c 98.3 2.6E-07 5.7E-12 88.0 1.2 142 3-148 126-284 (505)
45 KOG4579 Leucine-rich repeat (L 98.2 1.5E-07 3.2E-12 75.9 -1.5 80 22-107 28-111 (177)
46 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.3E-11 56.7 3.4 36 45-80 2-37 (44)
47 KOG1909 Ran GTPase-activating 98.2 2.3E-06 5E-11 79.5 5.6 218 17-254 26-283 (382)
48 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 55.0 3.5 41 21-61 1-41 (44)
49 KOG1909 Ran GTPase-activating 98.0 2.1E-06 4.6E-11 79.8 1.9 105 2-107 96-224 (382)
50 KOG1644 U2-associated snRNP A' 97.9 1.3E-05 2.9E-10 69.1 4.9 103 2-110 23-127 (233)
51 KOG1859 Leucine-rich repeat pr 97.9 1.4E-06 3.1E-11 87.9 -1.6 119 23-148 166-292 (1096)
52 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4.1E-10 68.2 4.7 114 23-144 21-149 (233)
53 PRK15386 type III secretion pr 97.8 2.9E-05 6.4E-10 75.4 4.9 67 2-79 56-124 (426)
54 PRK15386 type III secretion pr 97.6 0.00012 2.7E-09 71.2 5.9 111 18-148 49-169 (426)
55 KOG2982 Uncharacterized conser 97.3 3.8E-05 8.3E-10 70.1 -0.4 61 18-78 94-157 (418)
56 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.8E-09 76.6 2.8 135 1-149 125-264 (699)
57 PF00098 zf-CCHC: Zinc knuckle 97.1 0.00026 5.7E-09 36.3 1.4 18 375-392 1-18 (18)
58 KOG2123 Uncharacterized conser 97.0 4.6E-05 1E-09 69.0 -3.4 62 18-80 38-101 (388)
59 KOG3665 ZYG-1-like serine/thre 96.9 0.00037 7.9E-09 73.3 1.6 102 43-148 121-233 (699)
60 COG5238 RNA1 Ran GTPase-activa 96.8 0.0014 3.1E-08 59.3 4.5 144 2-148 34-227 (388)
61 COG5238 RNA1 Ran GTPase-activa 96.8 0.0021 4.5E-08 58.4 5.4 90 17-107 26-131 (388)
62 KOG0473 Leucine-rich repeat pr 96.7 4.3E-05 9.2E-10 67.4 -6.2 93 9-107 29-122 (326)
63 KOG2120 SCF ubiquitin ligase, 96.6 0.00019 4E-09 65.8 -2.7 143 1-147 188-350 (419)
64 KOG2982 Uncharacterized conser 96.6 0.00091 2E-08 61.4 1.7 38 43-80 70-110 (418)
65 KOG0473 Leucine-rich repeat pr 96.5 6.8E-05 1.5E-09 66.2 -5.9 79 2-80 46-124 (326)
66 KOG2123 Uncharacterized conser 96.4 0.00034 7.4E-09 63.5 -2.6 82 20-107 18-99 (388)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0022 4.7E-08 57.9 2.2 85 18-107 40-127 (260)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0013 2.9E-08 59.2 0.8 73 7-80 52-129 (260)
69 PF00560 LRR_1: Leucine Rich R 96.2 0.0017 3.6E-08 35.3 0.4 19 23-41 2-20 (22)
70 KOG2120 SCF ubiquitin ligase, 95.6 0.0012 2.5E-08 60.7 -2.8 123 23-148 187-326 (419)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0067 1.5E-07 32.9 1.0 12 69-80 2-13 (22)
72 PF13306 LRR_5: Leucine rich r 95.2 0.032 7E-07 45.4 4.9 84 13-105 3-90 (129)
73 KOG0109 RNA-binding protein LA 94.7 0.26 5.6E-06 45.1 9.2 161 220-397 6-183 (346)
74 PF13306 LRR_5: Leucine rich r 94.4 0.084 1.8E-06 42.9 5.4 93 2-105 16-112 (129)
75 PF13504 LRR_7: Leucine rich r 94.4 0.024 5.2E-07 28.5 1.3 16 22-37 2-17 (17)
76 PF13696 zf-CCHC_2: Zinc knuck 93.8 0.028 6.2E-07 33.2 0.9 19 375-393 9-27 (32)
77 smart00370 LRR Leucine-rich re 93.8 0.052 1.1E-06 30.6 2.0 21 20-40 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 93.8 0.052 1.1E-06 30.6 2.0 21 20-40 1-21 (26)
79 PF13504 LRR_7: Leucine rich r 93.1 0.058 1.3E-06 27.1 1.2 17 135-152 1-17 (17)
80 smart00343 ZnF_C2HC zinc finge 92.2 0.061 1.3E-06 30.4 0.7 18 376-393 1-18 (26)
81 smart00370 LRR Leucine-rich re 90.0 0.27 5.8E-06 27.6 2.0 19 44-62 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 90.0 0.27 5.8E-06 27.6 2.0 19 44-62 2-20 (26)
83 PF15288 zf-CCHC_6: Zinc knuck 89.4 0.19 4.1E-06 31.4 1.1 20 375-394 2-23 (40)
84 smart00364 LRR_BAC Leucine-ric 82.3 0.75 1.6E-05 25.9 1.0 17 22-38 3-19 (26)
85 COG5082 AIR1 Arginine methyltr 80.2 0.91 2E-05 39.2 1.3 17 375-391 98-114 (190)
86 smart00365 LRR_SD22 Leucine-ri 80.0 1.3 2.7E-05 25.1 1.4 16 20-35 1-16 (26)
87 PF13917 zf-CCHC_3: Zinc knuck 78.8 1.1 2.4E-05 28.6 1.0 19 374-392 4-22 (42)
88 COG5222 Uncharacterized conser 77.3 1.3 2.8E-05 40.6 1.5 26 375-400 177-202 (427)
89 KOG4308 LRR-containing protein 77.0 0.082 1.8E-06 53.4 -6.9 84 23-107 89-183 (478)
90 COG5082 AIR1 Arginine methyltr 76.2 1.2 2.5E-05 38.6 0.8 20 372-391 58-77 (190)
91 KOG4308 LRR-containing protein 75.0 0.048 1E-06 55.1 -9.2 145 3-148 120-303 (478)
92 PF13516 LRR_6: Leucine Rich r 72.6 1.7 3.6E-05 23.7 0.6 15 135-149 2-16 (24)
93 PTZ00368 universal minicircle 70.2 2.4 5.1E-05 35.6 1.3 21 373-393 128-148 (148)
94 smart00368 LRR_RI Leucine rich 62.8 5.4 0.00012 22.8 1.5 14 135-148 2-15 (28)
95 KOG0119 Splicing factor 1/bran 62.3 3.9 8.4E-05 40.5 1.2 30 376-405 287-317 (554)
96 KOG4400 E3 ubiquitin ligase in 61.7 3.6 7.9E-05 38.2 0.9 23 369-392 139-161 (261)
97 PF14787 zf-CCHC_5: GAG-polypr 60.1 6.1 0.00013 24.1 1.3 23 374-396 2-24 (36)
98 KOG3864 Uncharacterized conser 54.6 6.4 0.00014 34.7 1.2 12 96-107 151-162 (221)
99 COG1644 RPB10 DNA-directed RNA 54.3 5.3 0.00011 27.5 0.5 14 373-386 3-17 (63)
100 PLN00032 DNA-directed RNA poly 54.1 5.6 0.00012 28.4 0.6 14 373-386 3-17 (71)
101 PRK04016 DNA-directed RNA poly 53.7 5.8 0.00013 27.6 0.6 13 373-385 3-16 (62)
102 PF01194 RNA_pol_N: RNA polyme 52.3 6.6 0.00014 27.1 0.7 14 373-386 3-17 (60)
103 KOG3497 DNA-directed RNA polym 50.0 5.8 0.00013 27.1 0.2 11 373-383 3-13 (69)
104 KOG2560 RNA splicing factor - 49.3 7.1 0.00015 38.3 0.7 26 375-400 113-138 (529)
105 PTZ00368 universal minicircle 49.2 8.5 0.00018 32.2 1.1 17 376-392 2-18 (148)
106 KOG2044 5'-3' exonuclease HKE1 46.1 12 0.00027 39.4 1.9 27 369-395 255-281 (931)
107 KOG0341 DEAD-box protein abstr 45.6 8.9 0.00019 37.1 0.7 21 375-395 571-591 (610)
108 KOG3763 mRNA export factor TAP 44.1 12 0.00027 38.0 1.4 60 43-107 217-281 (585)
109 PF10083 DUF2321: Uncharacteri 43.6 11 0.00023 31.6 0.8 32 351-383 45-77 (158)
110 KOG3763 mRNA export factor TAP 42.3 14 0.00029 37.7 1.4 16 65-80 216-231 (585)
111 KOG1947 Leucine rich repeat pr 39.2 13 0.00029 37.3 0.9 13 94-106 293-305 (482)
112 KOG3864 Uncharacterized conser 37.9 7.6 0.00016 34.3 -0.9 80 21-105 101-185 (221)
113 KOG4285 Mitotic phosphoprotein 35.5 66 0.0014 30.1 4.6 73 288-364 186-259 (350)
114 PF01191 RNA_pol_Rpb5_C: RNA p 35.2 48 0.001 24.1 3.0 43 304-346 31-73 (74)
115 TIGR00864 PCC polycystin catio 30.6 32 0.0007 42.0 2.3 30 4-33 1-31 (2740)
116 COG1998 RPS31 Ribosomal protei 29.4 34 0.00075 22.5 1.3 18 364-381 6-26 (51)
117 PF14605 Nup35_RRM_2: Nup53/35 29.3 1.6E+02 0.0035 19.6 4.7 33 299-333 1-33 (53)
118 KOG4400 E3 ubiquitin ligase in 28.1 30 0.00064 32.1 1.2 24 373-396 163-186 (261)
119 KOG4236 Serine/threonine prote 26.4 45 0.00098 34.0 2.1 30 354-383 136-165 (888)
120 KOG3794 CBF1-interacting corep 26.4 28 0.00061 33.6 0.7 21 375-395 125-147 (453)
121 PF00567 TUDOR: Tudor domain; 26.2 95 0.0021 24.0 3.8 48 337-384 63-121 (121)
122 PF05515 Viral_NABP: Viral nuc 25.9 32 0.0007 27.6 0.9 19 375-393 63-81 (124)
123 KOG4211 Splicing factor hnRNP- 25.8 1.2E+02 0.0027 30.3 4.9 70 253-322 52-126 (510)
124 TIGR00864 PCC polycystin catio 25.3 44 0.00095 41.0 2.1 30 27-56 1-31 (2740)
125 KOG1947 Leucine rich repeat pr 23.3 39 0.00084 33.9 1.1 126 18-148 240-375 (482)
126 COG4416 Com Mu-like prophage p 23.0 29 0.00062 23.2 0.1 26 375-400 5-37 (60)
127 COG5179 TAF1 Transcription ini 22.9 38 0.00083 34.8 0.9 20 374-393 937-958 (968)
128 PRK09570 rpoH DNA-directed RNA 22.8 79 0.0017 23.3 2.3 44 304-347 34-77 (79)
129 PF14599 zinc_ribbon_6: Zinc-r 22.4 52 0.0011 22.9 1.2 21 363-383 37-57 (61)
130 smart00647 IBR In Between Ring 21.9 49 0.0011 22.6 1.1 17 374-390 48-64 (64)
131 COG2012 RPB5 DNA-directed RNA 21.0 1.2E+02 0.0027 22.1 2.9 41 306-346 39-79 (80)
No 1
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=99.93 E-value=1.3e-26 Score=198.55 Aligned_cols=151 Identities=33% Similarity=0.676 Sum_probs=144.5
Q ss_pred eechHHHhhhcccccceEEEEecC-CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHhHHcCceEEcC
Q 047084 198 KFSKRIQDKLIKPWQNSVVVKLLG-RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFG 276 (437)
Q Consensus 198 ~l~~n~l~~l~~~~~~~l~~~l~~-~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~vl~~~pw~~~~ 276 (437)
.++..+.++....|+.++++++.+ .+++...+...+..+|+..+.+++.++++|+|+++|++.+|+.+|+.++||.+++
T Consensus 2 ~i~~~~~~~~~~~~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~~~p~~~~~ 81 (153)
T PF14111_consen 2 KISEEEVEELLERWQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLKGGPWNFNG 81 (153)
T ss_pred EeCHHHHHhHHHhcCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEecccccccc
Confidence 466777777888999999999986 6689999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCCCCcccccceeEEEEecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEEE
Q 047084 277 HYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVR 348 (437)
Q Consensus 277 ~~l~l~~w~~~~~~~~~~~~~~p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V~ 348 (437)
+.+.+++|++.+++.+..+.+.++|||++|||++||+++++..||+.+|+++++|..|....+++||||+|+
T Consensus 82 ~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv~V~ 153 (153)
T PF14111_consen 82 HFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARVRVE 153 (153)
T ss_pred cchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-24 Score=206.42 Aligned_cols=296 Identities=14% Similarity=0.120 Sum_probs=156.5
Q ss_pred EEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
.||||.|.|+++|. +|..=.++++|+|++|.|+.+. ..|.++.+|.+|.|++|+++.+|.. |.+|++|+.|+|..|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 45666666666654 3444455666666666665443 3455555666666666666666553 5556666666666665
Q ss_pred cccccccccccccccCCccCcEEEeecCChH--------hHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSE--------ALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~--------~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~ 149 (437)
|.-.- -..|.++.+|+.|.|..|... .+.+|+.|..-.|.+..+. .++.++++|+.|+||.|.|..
T Consensus 233 irive-----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 233 IRIVE-----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred eeeeh-----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 54110 112344444444444444311 1112222222223333222 233444444444444444443
Q ss_pred CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccc--c
Q 047084 150 DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPW--Q 212 (437)
Q Consensus 150 ~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~--~ 212 (437)
.-+..+ .+.++.++.|++.. +.....++.|+|++|.++.... .++.++.+..|.++...+.. .
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 223322 23334444444411 1112223444444444442211 23333334444333222211 0
Q ss_pred ceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE----EeCChhhHHHhHHcCceEEcCceEEEeecCCCC
Q 047084 213 NSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI----RLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQF 288 (437)
Q Consensus 213 ~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~----~f~~~~d~~~vl~~~pw~~~~~~l~l~~w~~~~ 288 (437)
+.-+.++..+.+..|+++.+.+++|.....++.+++++|.+.- .|+..+-.+.|+......|||+...+..|--+-
T Consensus 388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhc
Confidence 1114456677899999999999999999999999999998874 477776666689999999999999999996543
Q ss_pred CC--CcccccceeEEE
Q 047084 289 DS--TTTDLDSAIVWI 302 (437)
Q Consensus 289 ~~--~~~~~~~~p~Wv 302 (437)
.+ +...-...|-|.
T Consensus 468 ~lq~sv~a~CayPe~L 483 (873)
T KOG4194|consen 468 KLQSSVIAKCAYPEPL 483 (873)
T ss_pred ccccceeeeccCCccc
Confidence 22 222233455554
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.2e-22 Score=197.33 Aligned_cols=241 Identities=18% Similarity=0.235 Sum_probs=172.2
Q ss_pred EEEecCCCC--CcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 2 VLDLEDAPV--DYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 2 ~L~L~~n~l--~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
.+++.+|++ .-+|..+.+|..|+.||||+|++.++|..+.+-.++-.|+|++|.|..||.. |.+|+.|-+||||+|+
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 456677877 5678888889999999999999988888888888888999998888889887 6788889999999998
Q ss_pred cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhcc-----cccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQLR-----NLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l~-----n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
+. .+|..+..+..|++|.|++|.. ..+++++.|..|. .-...+|.++..+.+|..+|||.|.+.
T Consensus 162 Le------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 162 LE------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred hh------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 87 6788888888899999998873 3335555555551 123567778888888888888888887
Q ss_pred CCCCCCc----hhhhhhcCCCCCCC---Cchh-ccceeeecCCCCcccCCC-----CC----------------------
Q 047084 149 ADSPSPL----SFKDALVHPEQYRS---SEDA-EMEEEWDLEPGDVTIGDD-----GT---------------------- 193 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l~~---~~~~-~~~~~L~L~~n~l~~~~~-----~~---------------------- 193 (437)
..|..+ ++..+.+++|+|.- .... ..++.|+||.|+|+..+. ..
T Consensus 236 -~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 677654 56677777887722 1111 134667777777774433 11
Q ss_pred ---CCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcE
Q 047084 194 ---MPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNY 252 (437)
Q Consensus 194 ---lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~ 252 (437)
+..+....|.+.-.++. .|-++++..+.+++|.+.+ +|.+...+..++++|+..|-
T Consensus 315 L~~Levf~aanN~LElVPEg--lcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEG--LCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhHHHHhhccccccCchh--hhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 12222333333323222 3445677777888888764 78888889999999999884
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=2.6e-20 Score=205.05 Aligned_cols=249 Identities=18% Similarity=0.242 Sum_probs=148.6
Q ss_pred CEEEecCCCCC-cCCccccCCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCc-ccccchhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTL-VRELPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~n 77 (437)
++|+|++|.+. .+|..++++.+|++|+|++|.+ +.+|..++++++|++|++++|. .+.+|..++++++|++|++++|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 45666666663 5666777777777777777776 4677777777777777777444 4466777777777777777777
Q ss_pred ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccc-cccCCchhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNL-LKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~-~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.+++. +|..++++++|++|++++|. +..+.++++|+.+ +|. .+.+|..+.++++|++|++++|.++
T Consensus 223 ~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 223 NLSGE-----IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ccCCc-----CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 77653 36677777777777777775 3445555555544 333 3566777777777777777777777
Q ss_pred CCCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccc
Q 047084 149 ADSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQN 213 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~ 213 (437)
+.+|..+ ++..+.++.|.+.. +.....++.|++++|+++...+ ..+..+.++.|.+....+.+.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~- 376 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL- 376 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-
Confidence 7666543 34455566666511 1223334667777777652221 234445555554443222110
Q ss_pred eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084 214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI 255 (437)
Q Consensus 214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~ 255 (437)
+-..++..+.++.|.+.+.++..+.....++.+++++|.+..
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 111223334455555555555555555555555555555543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.1e-20 Score=179.44 Aligned_cols=245 Identities=18% Similarity=0.253 Sum_probs=157.7
Q ss_pred CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~ 78 (437)
+.||+++|++.++. ..|.++++|+.+++.+|.+..+|...+...+|+.|+|.+|.|..+.. ++.-++.|+.||||.|.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 46888988888884 45788899999999998888888777777778899998888888765 48888889999999998
Q ss_pred cccccccccccc-cccCCccCcEEEeecCC--------hHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084 79 YTAGFAAAKLHE-GFGSLTNLQKLCIIEAD--------SEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~--------~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~ 148 (437)
|+ ++|. +|-.-.++++|+|++|+ +..+.+|..|+..+|.++.+|. .|.++++|+.|+|..|+|.
T Consensus 161 is------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 161 IS------EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hh------cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 88 4453 35556688889988887 4445566666666888888885 4556888888888888886
Q ss_pred C----CCCCCchhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcc-ccc
Q 047084 149 A----DSPSPLSFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIK-PWQ 212 (437)
Q Consensus 149 ~----~~p~~~~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~-~~~ 212 (437)
- ++...-++..+-+..|.+. .+-..+..+.|+|+.|+++.... ..+..++++.|.++.+.. .|.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 1 1222235555666666662 23334445667777777652211 123334444444444322 332
Q ss_pred ceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEE
Q 047084 213 NSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF 253 (437)
Q Consensus 213 ~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f 253 (437)
. ..++..+++++|+++..-+..+..+..++.+.+++|.+
T Consensus 315 f--tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 315 F--TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred h--cccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 2 23333344455555544444444444555555555543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=6.4e-20 Score=201.98 Aligned_cols=251 Identities=21% Similarity=0.258 Sum_probs=163.8
Q ss_pred CEEEecCCCC-CcCCccccCCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCcc-cccchhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPV-DYLPEGVGNLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTLV-RELPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l-~~lp~~~~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~~-~~lp~~~~~L~~L~~L~l~~n 77 (437)
|+|+|++|.+ +.+|..+.++++|++|+|++|.+ +.+|..++++++|++|++++|.+ +.+|..++++++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 5789999987 57788899999999999999988 47888899999999999995554 478888999999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---cccc-ccCCchhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLL-KTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~-~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.+++. +|..++++++|++|++++|. +..+.++.+|+.+ +|.+ +.+|..+..+++|++|++++|.++
T Consensus 247 ~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 247 NLTGP-----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred eeccc-----cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 88864 47788888888888888886 3445555555444 3433 567777777888888888888887
Q ss_pred CCCCCCc----hhhhhhcCCCCCC--C---CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhccccc-
Q 047084 149 ADSPSPL----SFKDALVHPEQYR--S---SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQ- 212 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l~--~---~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~- 212 (437)
+.+|..+ ++..+.++.|.+. . ......++.|++++|+++...+ ..+..+.++.|.+....+.+.
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 7666544 3445566666652 1 1122334567777777652221 223334444443332211110
Q ss_pred ----------------------ceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE
Q 047084 213 ----------------------NSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR 256 (437)
Q Consensus 213 ----------------------~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~ 256 (437)
......+..++++.|.+.+..+..+...+.++.+++++|.+...
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 00111222344555555555555444556666666666666543
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=5.5e-21 Score=158.04 Aligned_cols=131 Identities=22% Similarity=0.351 Sum_probs=68.4
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG 82 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~ 82 (437)
|-||+|+++.+|+.+..|.+|+.|++++|+|.++|..+..|++|+.|+++-|++..+|.+|+.++.|+.|||.+|++...
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555422
Q ss_pred cccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084 83 FAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP 154 (437)
Q Consensus 83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~ 154 (437)
.+|..|..|+.|+-|++++|. +..+|+.++++++|+.|.+.+|.+- ++|..
T Consensus 118 ----~lpgnff~m~tlralyl~dnd----------------fe~lp~dvg~lt~lqil~lrdndll-~lpke 168 (264)
T KOG0617|consen 118 ----SLPGNFFYMTTLRALYLGDND----------------FEILPPDVGKLTNLQILSLRDNDLL-SLPKE 168 (264)
T ss_pred ----cCCcchhHHHHHHHHHhcCCC----------------cccCChhhhhhcceeEEeeccCchh-hCcHH
Confidence 345555555555555555554 4444555555555555555555544 34433
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=8e-20 Score=177.85 Aligned_cols=244 Identities=17% Similarity=0.201 Sum_probs=166.0
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcc--cccchhhcCCcCCcEEeceeeccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLV--RELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~--~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
|.|...++.++|+.++.|.+|++|.+++|++..+...+..|++|+.+.+..|.+ +.+|+++..|..|+.||||+|+++
T Consensus 37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh
Confidence 445555566666666666666666666666666666666666666666663333 357888888888888888888888
Q ss_pred cccccccccccccCCccCcEEEeecCChHhH-----hhcc---chHhcccccccCCchhhcCCCCCeEEeeCCcCC----
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-----KELM---KLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD---- 148 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~-----~~L~---~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~---- 148 (437)
++|..+..-.++-.|+||+|+.+.+ .+|+ -|+..+|.+..+|+.+..+..|++|+|++|++.
T Consensus 117 ------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 117 ------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred ------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 6788888888888888888884443 2344 344447888899999999999999999999886
Q ss_pred CCCCCCchhhhhhcCCCCC------CCCchhccceeeecCCCCcccCCC-----CCCCeEeechHHHhhhcccccceEEE
Q 047084 149 ADSPSPLSFKDALVHPEQY------RSSEDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQDKLIKPWQNSVVV 217 (437)
Q Consensus 149 ~~~p~~~~~~~~~l~~n~l------~~~~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~~l~~~~~~~l~~ 217 (437)
..+|...++..+.+++.+- ++......+..+|||.|+|...+. .++..+.++.|.++++.--. ....
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~--~~W~ 268 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE--GEWE 268 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH--HHHh
Confidence 3466665666555554332 222233344557888888874443 45556677777777654310 0124
Q ss_pred EecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084 218 KLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI 255 (437)
Q Consensus 218 ~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~ 255 (437)
++.++++|.|+++. +|.+.+.+++++-+.+.+|.+.|
T Consensus 269 ~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred hhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccc
Confidence 56677888888864 67777788888888888888775
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=3e-19 Score=165.80 Aligned_cols=225 Identities=24% Similarity=0.289 Sum_probs=151.3
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA 81 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~ 81 (437)
+|++++|++.++|++++.+..++.|+.++|++.++|+.++.+.+|..|+.+.|.+..+|++++.+-.|..|+..+|+++
T Consensus 72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~- 150 (565)
T KOG0472|consen 72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS- 150 (565)
T ss_pred EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-
Confidence 4566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084 82 GFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP-- 152 (437)
Q Consensus 82 ~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p-- 152 (437)
.+|++++.+.+|..|++.+|. +...-+++.|+.+ .|.++.+|+.++.+.+|..|+|.+|+|. .+|
T Consensus 151 -----slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef 224 (565)
T KOG0472|consen 151 -----SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPEF 224 (565)
T ss_pred -----cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCCC
Confidence 557777777777777777776 2222335555555 6889999999999999999999999998 555
Q ss_pred -CCchhhhhhcCCCCCCCC-----chhccceeeecCCCCcccCCC-----CCCCeEeechHHHhhhcccccceEEEEecC
Q 047084 153 -SPLSFKDALVHPEQYRSS-----EDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQDKLIKPWQNSVVVKLLG 221 (437)
Q Consensus 153 -~~~~~~~~~l~~n~l~~~-----~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~ 221 (437)
..-.+.++..+.|++... .....+-.|||..|+++..++ .++..+.+++|.++.++...... .+..
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl---hL~~ 301 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL---HLKF 301 (565)
T ss_pred CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc---eeee
Confidence 444678999999998432 234455779999999985444 34566777888877776654332 2223
Q ss_pred CCcCHHHHHHHHHhc
Q 047084 222 RNIGYKVLCNRLKVM 236 (437)
Q Consensus 222 ~~ls~n~l~~~l~~~ 236 (437)
+.+-.|-+++.-+.+
T Consensus 302 L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 302 LALEGNPLRTIRREI 316 (565)
T ss_pred hhhcCCchHHHHHHH
Confidence 334555555444433
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=2.1e-17 Score=171.79 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=159.6
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA 81 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~ 81 (437)
.|++++|.++.+|+.+. .+|+.|++++|+|+.+|.. +++|++|++++|.++.+|.. .++|+.|++++|.++.
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTH 276 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhh
Confidence 68899999999988775 3788888888888877753 46788888888888877753 2455556555555542
Q ss_pred ccc--------------cccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeEEee
Q 047084 82 GFA--------------AAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKARFR 143 (437)
Q Consensus 82 ~~~--------------~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~ 143 (437)
..+ +..+|. .+++|+.|++++|++..+ ..|..|...+|.+..+|.. ..+|+.|+|+
T Consensus 277 Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 277 LPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVS 350 (788)
T ss_pred hhhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCcccccccc---ccccceEecC
Confidence 110 002232 125678888888774443 2455555556777777742 2479999999
Q ss_pred CCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC--CCCCeEeechHHHhhhcccccceEEEEe
Q 047084 144 SHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD--GTMPTIKFSKRIQDKLIKPWQNSVVVKL 219 (437)
Q Consensus 144 ~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~--~~lp~l~l~~n~l~~l~~~~~~~l~~~l 219 (437)
+|+|+ .+|... ++..+.++.|++.. ......++.|++++|+|+..+. ..+..+.++.|.+..++.. ..++
T Consensus 351 ~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l-----~~~L 424 (788)
T PRK15387 351 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML-----PSGL 424 (788)
T ss_pred CCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcc-----hhhh
Confidence 99999 466543 45566778888732 2223456789999999984432 3566788888888776532 2345
Q ss_pred cCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084 220 LGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI 255 (437)
Q Consensus 220 ~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~ 255 (437)
..++++.|.++ .+|..+.....+..+++++|.|..
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 56788899987 467778888999999999999874
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=1.2e-18 Score=161.82 Aligned_cols=241 Identities=20% Similarity=0.286 Sum_probs=193.5
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA 81 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~ 81 (437)
.|++++|.+..+.+.+.+|..|.+|++++|++.++|++++.+..++.|+.+.|.+..+|+.++.+.+|..|+.++|++.
T Consensus 49 ~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~- 127 (565)
T KOG0472|consen 49 KLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK- 127 (565)
T ss_pred hhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-
Confidence 4678999999998899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084 82 GFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP 154 (437)
Q Consensus 82 ~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~ 154 (437)
++|++++.+..|..|+..+|+ |+++.++..|..+ .|.+..+|+..-+++.|++||...|-++ ++|+.
T Consensus 128 -----el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~ 201 (565)
T KOG0472|consen 128 -----ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPE 201 (565)
T ss_pred -----ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChh
Confidence 789999999999999999998 5555555555444 6788888877767999999999999998 88887
Q ss_pred c----hhhhhhcCCCCC---CCCchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccceEEEEecC
Q 047084 155 L----SFKDALVHPEQY---RSSEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLG 221 (437)
Q Consensus 155 ~----~~~~~~l~~n~l---~~~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~ 221 (437)
+ ++.-+++..|++ +.+...+.+..|.++.|++.+.+. ..+-.+.+.+|.+.+++.. .|+...+..
T Consensus 202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~r 279 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLER 279 (565)
T ss_pred hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH--HHHhhhhhh
Confidence 7 344567889988 555666677788999999985543 3444566677777766543 344555677
Q ss_pred CCcCHHHHHHHHHhcccCCCceEEEEcCCcEE
Q 047084 222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF 253 (437)
Q Consensus 222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f 253 (437)
+++|.|.++. ++...+.+ .+..+.+.+|-+
T Consensus 280 LDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 280 LDLSNNDISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence 7888888765 44455555 667777777755
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-17 Score=137.30 Aligned_cols=154 Identities=22% Similarity=0.330 Sum_probs=128.5
Q ss_pred cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCC
Q 047084 16 GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSL 95 (437)
Q Consensus 16 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l 95 (437)
.+.++.+.+.|-||+|++..+|+.+..+.+|+.|++.||.+..+|.++..|++|++|+++-|++. .+|.+|+.+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~------~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN------ILPRGFGSF 101 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh------cCccccCCC
Confidence 56778999999999999999999999999999999999999999999999999999999999988 679999999
Q ss_pred ccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCch----hhhhhcCCCCC-CC-
Q 047084 96 TNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLS----FKDALVHPEQY-RS- 169 (437)
Q Consensus 96 ~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~----~~~~~l~~n~l-~~- 169 (437)
+.|+.|++..|+.. -..+|..|+.++.|+.|+|++|.+. .+|..+. +.-+.+..|.+ ..
T Consensus 102 p~levldltynnl~--------------e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 102 PALEVLDLTYNNLN--------------ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred chhhhhhccccccc--------------cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCc
Confidence 99999999997532 2468889999999999999999999 7887663 33344555665 22
Q ss_pred --CchhccceeeecCCCCcccCC
Q 047084 170 --SEDAEMEEEWDLEPGDVTIGD 190 (437)
Q Consensus 170 --~~~~~~~~~L~L~~n~l~~~~ 190 (437)
......+..|.+.+|++++.+
T Consensus 167 keig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecC
Confidence 122333466889999998554
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=5.6e-17 Score=150.53 Aligned_cols=259 Identities=18% Similarity=0.229 Sum_probs=173.7
Q ss_pred EecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCccccc-chhhcCCcCCcEEecee-eccc
Q 047084 4 DLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQ-YNYT 80 (437)
Q Consensus 4 ~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~-n~l~ 80 (437)
|-++-.++++|..+. ..-..++|..|+|+.||+ +|+.+++|+.|||++|.|+.| |..|.+|++|..|-+.+ |+|+
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344455777776553 245677888888888874 567788888888888888877 44588888888776666 8887
Q ss_pred ccccccccccc-ccCCccCcEEEeecCC-----hHhHhhccchHh---cccccccCCc-hhhcCCCCCeEEeeCCcCC--
Q 047084 81 AGFAAAKLHEG-FGSLTNLQKLCIIEAD-----SEALKELMKLRQ---LRNLLKTIPP-PLAADRSTKKARFRSHEVD-- 148 (437)
Q Consensus 81 ~~~~~~~lp~~-~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~---l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~-- 148 (437)
.+|.. |++|.+|+.|.+..|. ...|..|..|.. -+|.+..++. ++..+..++++.+..|.+-
T Consensus 130 ------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 130 ------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred ------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 56755 7888888888888776 233444444443 3778888886 6778888888888888832
Q ss_pred ----------CCCCCCc--------------------------hhhhh--hcCCCC-C----CC--CchhccceeeecCC
Q 047084 149 ----------ADSPSPL--------------------------SFKDA--LVHPEQ-Y----RS--SEDAEMEEEWDLEP 183 (437)
Q Consensus 149 ----------~~~p~~~--------------------------~~~~~--~l~~n~-l----~~--~~~~~~~~~L~L~~ 183 (437)
...|..+ .+.++ .++.+. . +. +.....+++|+|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 1111111 00000 011111 1 00 12233456688888
Q ss_pred CCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE----EeCC
Q 047084 184 GDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI----RLKS 259 (437)
Q Consensus 184 n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~----~f~~ 259 (437)
|+++...++.+.. + ..+..+.+..|++...-..+|..+.+++.+++.+|.+.. .|..
T Consensus 284 N~i~~i~~~aFe~----------~---------a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 284 NKITRIEDGAFEG----------A---------AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred Cccchhhhhhhcc----------h---------hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 8887443322221 1 234445688899999999999999999999999999985 4666
Q ss_pred hhhHHHh-HHcCceEEcCceEEEeecCCCCC
Q 047084 260 PEDAVYA-LTEGPWVIFGHYLTVQPWTPQFD 289 (437)
Q Consensus 260 ~~d~~~v-l~~~pw~~~~~~l~l~~w~~~~~ 289 (437)
...+..+ +-++||.++++...+.+|-..-.
T Consensus 345 ~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred cceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 5555554 78899999999999999976544
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1.7e-15 Score=158.44 Aligned_cols=213 Identities=19% Similarity=0.215 Sum_probs=97.0
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG 82 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~ 82 (437)
|+|++|+++.+|..+. .+|++|++++|++..+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++|+++
T Consensus 204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-- 275 (754)
T PRK15370 204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-- 275 (754)
T ss_pred EEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC--
Confidence 4444444444444332 244445555444444444332 244555555444445544432 24555555555554
Q ss_pred cccccccccccCCccCcEEEeecCChHhH-----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc--
Q 047084 83 FAAAKLHEGFGSLTNLQKLCIIEADSEAL-----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL-- 155 (437)
Q Consensus 83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~~-----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~-- 155 (437)
.+|..+. .+|+.|++++|++..+ .+|..|...+|.+..+|..+. ++|+.|++++|.++ .+|..+
T Consensus 276 ----~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~~ 346 (754)
T PRK15370 276 ----CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT-SLPASLPP 346 (754)
T ss_pred ----ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCccc-cCChhhcC
Confidence 2343332 2455555555553222 133444444455555554332 35555555555555 244322
Q ss_pred hhhhhhcCCCCCCCC--chhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHH-
Q 047084 156 SFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNR- 232 (437)
Q Consensus 156 ~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~- 232 (437)
++..+.+++|++... .....++.|++++|+|+ .++.... ..+..+++++|.+...
T Consensus 347 sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt------------------~LP~~l~----~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 347 ELQVLDVSKNQITVLPETLPPTITTLDVSRNALT------------------NLPENLP----AALQIMQASRNNLVRLP 404 (754)
T ss_pred cccEEECCCCCCCcCChhhcCCcCEEECCCCcCC------------------CCCHhHH----HHHHHHhhccCCcccCc
Confidence 333444444444211 11123344555555543 3322110 1222344555555432
Q ss_pred --HHhcccCCCceEEEEcCCcEEE
Q 047084 233 --LKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 233 --l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
++........+..+++++|.|.
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 3333344566778888888876
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.2e-14 Score=152.17 Aligned_cols=170 Identities=17% Similarity=0.259 Sum_probs=122.6
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|+++.+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++|.+..+|..+. ++|+.|++++|+++
T Consensus 223 ~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 223 KTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc
Confidence 478888888888887654 368888888888888887664 478888888888888887654 47888888888887
Q ss_pred cccccccccccccCCccCcEEEeecCChHhH-----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL 155 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~-----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~ 155 (437)
.+|..+. ++|+.|++++|....+ .+|+.|...+|.+..+|..+. ++|+.|++++|+|+ .+|..+
T Consensus 297 ------~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 297 ------TLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred ------cCcccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh
Confidence 3454442 4678888888874333 356666666777777887653 68888888888888 466533
Q ss_pred --hhhhhhcCCCCCCCC--chhccceeeecCCCCcc
Q 047084 156 --SFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 156 --~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~ 187 (437)
++..+.+++|++... .....++.|++++|+|+
T Consensus 366 p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 366 PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLV 401 (754)
T ss_pred cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc
Confidence 456677888887221 12234677888888886
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=8.9e-15 Score=152.38 Aligned_cols=215 Identities=17% Similarity=0.102 Sum_probs=117.0
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhc-----------------ccCCCEEEccCCcccccchhh
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGN-----------------LLGLETLDLKNTLVRELPVEI 63 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~-----------------l~~L~~L~l~~~~~~~lp~~~ 63 (437)
+.|++++|+++.+|.. +++|++|++++|+|..+|....+ ..+|+.|++++|.+..+|.
T Consensus 225 ~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~-- 299 (788)
T PRK15387 225 TTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV-- 299 (788)
T ss_pred CEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc--
Confidence 3577888888777753 46778888888877766642211 1234455555555555554
Q ss_pred cCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhHh----hccchHhcccccccCCchhhcCCCCCe
Q 047084 64 RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALK----ELMKLRQLRNLLKTIPPPLAADRSTKK 139 (437)
Q Consensus 64 ~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~----~L~~L~~l~n~~~~ip~~~~~l~~L~~ 139 (437)
.+++|+.|++++|++++. |... .+|+.|++++|....++ +|..|...+|.+..+|.. ..+|+.
T Consensus 300 -~p~~L~~LdLS~N~L~~L------p~lp---~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~ 366 (788)
T PRK15387 300 -LPPGLQELSVSDNQLASL------PALP---SELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSELYK 366 (788)
T ss_pred -cccccceeECCCCccccC------CCCc---ccccccccccCccccccccccccceEecCCCccCCCCCC---Ccccce
Confidence 236799999999998843 3311 23555666666544332 344444445666666642 235556
Q ss_pred EEeeCCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC--CCCCeEeechHHHhhhcccccceE
Q 047084 140 ARFRSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD--GTMPTIKFSKRIQDKLIKPWQNSV 215 (437)
Q Consensus 140 L~l~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~--~~lp~l~l~~n~l~~l~~~~~~~l 215 (437)
|++++|+|+ .+|... ++..+.+++|++.. ......++.|++++|+|+..+. ..+..+.++.|.+..++..+. .
T Consensus 367 L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~--~ 443 (788)
T PRK15387 367 LWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLI--H 443 (788)
T ss_pred ehhhccccc-cCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHh--h
Confidence 666666666 355433 34455566666521 1122334556677776653221 123334555555555543321 1
Q ss_pred EEEecCCCcCHHHHHHHHHhc
Q 047084 216 VVKLLGRNIGYKVLCNRLKVM 236 (437)
Q Consensus 216 ~~~l~~~~ls~n~l~~~l~~~ 236 (437)
...+..+++++|.+++..+..
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred ccCCCeEECCCCCCCchHHHH
Confidence 234444566666666554443
No 17
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=99.47 E-value=2.8e-14 Score=95.50 Aligned_cols=44 Identities=39% Similarity=0.887 Sum_probs=40.2
Q ss_pred eeCCCCceeEEEEe---Ce--EEEEEEccCcccccccccccccCCCCCC
Q 047084 349 ISLSQPLLSRFNID---GK--IQKVEYEGLPIICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 349 id~~kpl~~~i~~~---g~--~~~v~YE~lp~~C~~cg~~gH~~~~C~~ 392 (437)
||+++||..++.+. |. +++|+|||+|.||++||.+||..++|++
T Consensus 1 id~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 1 IDVSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDKECPK 49 (49)
T ss_pred CCCCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHhHcCC
Confidence 69999999999995 33 7899999999999999999999999985
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=5.9e-15 Score=137.25 Aligned_cols=191 Identities=15% Similarity=0.230 Sum_probs=133.0
Q ss_pred EEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEcc-CCcccccchh-hcCCcCCcEEeceee
Q 047084 2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLK-NTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~-~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
.++|..|+|+.||+ .|..+.+|+.||||+|.|+.| |.+|.++.+|.+|-+. +|.|+.+|.+ |++|.+|+.|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 57899999999987 689999999999999999855 6889999999988776 6999999976 777777777777776
Q ss_pred ccccccccccccccccCCccCcEEEeecCChHhH------------------------hhccc-----------------
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL------------------------KELMK----------------- 116 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~------------------------~~L~~----------------- 116 (437)
++.... ...|..|++|..|.+.+|....+ -+|+.
T Consensus 151 ~i~Cir-----~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 151 HINCIR-----QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hhcchh-----HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 665321 23344555555554444431111 00100
Q ss_pred ----------------------hHhc-------ccccccCC-chhhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhc
Q 047084 117 ----------------------LRQL-------RNLLKTIP-PPLAADRSTKKARFRSHEVDADSPSPL----SFKDALV 162 (437)
Q Consensus 117 ----------------------L~~l-------~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l 162 (437)
++.+ .+....-| ..|..+++|++|+|++|+|++.-+..| ++.++.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 0001 11123333 347889999999999999996555555 6889999
Q ss_pred CCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeE
Q 047084 163 HPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTI 197 (437)
Q Consensus 163 ~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l 197 (437)
+.|++.. +.....+..|+|.+|++|...++.+.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 9999933 3445567889999999996655555443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=1.4e-14 Score=147.57 Aligned_cols=245 Identities=18% Similarity=0.207 Sum_probs=146.4
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
+.||+++|.+..+|..+..+.+|+.|+++.|.|..+|.++.++.+|++|.|.+|.+..+|.++..+++|++|+++.|++.
T Consensus 48 ~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 48 KSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred EEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC
Confidence 35777777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred cccccccccccccCCccCcEEEeecCC-hHhHhhcc--chHhc-ccccccCCchhhcCCCCCeEEeeCCcCCCCC-CCCc
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEAD-SEALKELM--KLRQL-RNLLKTIPPPLAADRSTKKARFRSHEVDADS-PSPL 155 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~-~~~~~~L~--~L~~l-~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~-p~~~ 155 (437)
.+|..+..++.+..+..++|. ...++.+. .+..- +.+.+.++..+..++. .|+|.+|++.... ...-
T Consensus 128 ------~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 128 ------PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred ------CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhcc
Confidence 456667777777777777772 22222222 22211 2233555555555554 5888888877211 1222
Q ss_pred hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC----CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHH
Q 047084 156 SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD----GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC 230 (437)
Q Consensus 156 ~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~----~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~ 230 (437)
.+..+....|++.. .-.+..+..|+.++|.++.... ..+..+.++.+.+..++ .|... ..++...+.++|.+.
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~-~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGA-CANLEALNANHNRLV 277 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHh-cccceEecccchhHH
Confidence 33444555566522 2223344555666666652222 33444556666666665 44322 224444455555554
Q ss_pred HHHHhc----------------------ccCCCceEEEEcCCcEEEE
Q 047084 231 NRLKVM----------------------WHQIHDFSVIDLENNYFLI 255 (437)
Q Consensus 231 ~~l~~~----------------------w~~~~~l~~l~l~~N~f~~ 255 (437)
....++ -...+.++.+++..|.+..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence 433222 2346678888998887653
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=5.9e-15 Score=150.25 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=100.5
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA 81 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~ 81 (437)
++|+++|++..+|+.++.+.+|+.|++.+|++..+|..+..+++|+.|.+..|.+..+|+...++++|++|+|..|++.
T Consensus 245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~- 323 (1081)
T KOG0618|consen 245 YLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP- 323 (1081)
T ss_pred eeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-
Confidence 5666677776676666667777777777777766666666667777776666667777766666677777777777665
Q ss_pred ccccccccccc-cCCc-cCcEEEeecCChHh--------HhhccchHhccccccc-CCchhhcCCCCCeEEeeCCcCCCC
Q 047084 82 GFAAAKLHEGF-GSLT-NLQKLCIIEADSEA--------LKELMKLRQLRNLLKT-IPPPLAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 82 ~~~~~~lp~~~-~~l~-~L~~L~l~~n~~~~--------~~~L~~L~~l~n~~~~-ip~~~~~l~~L~~L~l~~N~l~~~ 150 (437)
.+|+.+ .-+. +|+.|..+.|..+. .+.|..|..-+|.++. .=+.+-+..+|+.|+|++|+|. .
T Consensus 324 -----~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 324 -----SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred -----ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence 344432 2222 24444444443111 1223333333444422 2234555666777777777776 5
Q ss_pred CCCCc-----hhhhhhcCCCCCCCC----chhccceeeecCCCCcc
Q 047084 151 SPSPL-----SFKDALVHPEQYRSS----EDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 151 ~p~~~-----~~~~~~l~~n~l~~~----~~~~~~~~L~L~~n~l~ 187 (437)
+|... .+.++.+++|++... .....+++|..-+|++.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee
Confidence 66543 455666666666221 11223345555556553
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=5.8e-14 Score=136.23 Aligned_cols=144 Identities=28% Similarity=0.406 Sum_probs=78.6
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG 82 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~ 82 (437)
.||+.|++.++|..++.+..|+.|.|..|.+..+|..++++..|++|+|+.|.+..+|..+..|+ |+.|-+++|+++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-- 156 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-- 156 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc--
Confidence 45666666666666555555666666666665566666666666666666555566665555554 555556666555
Q ss_pred cccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc
Q 047084 83 FAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL 155 (437)
Q Consensus 83 ~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~ 155 (437)
.+|+.++.+..|..|+.+.|+ +..+..|..|+.+ +|....+|+.+..|+ |.+||+|+|+++ .+|-.|
T Consensus 157 ----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 157 ----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred ----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhh
Confidence 445555555555556555555 2222233333332 344455555555333 555555555555 455444
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=2e-13 Score=132.54 Aligned_cols=145 Identities=24% Similarity=0.343 Sum_probs=128.8
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG 82 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~ 82 (437)
|.|+.|.+..+|..+.+|..|++|||+.|++..+|..++.|+ |+.|.++||.++.+|++++.+..|.+|+.+.|++.
T Consensus 103 liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-- 179 (722)
T KOG0532|consen 103 LILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-- 179 (722)
T ss_pred HHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh--
Confidence 457889999999999999999999999999999999999887 99999999999999999999999999999999998
Q ss_pred cccccccccccCCccCcEEEeecCChHh----Hh--hccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc
Q 047084 83 FAAAKLHEGFGSLTNLQKLCIIEADSEA----LK--ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL 155 (437)
Q Consensus 83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~----~~--~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~ 155 (437)
.+|..++++.+|+.|.+..|.... +. .|..|+...|.+..||..|.+|..|++|-|.+|.|. .-|..+
T Consensus 180 ----slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 180 ----SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred ----hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 779999999999999999998433 32 234555558999999999999999999999999999 445554
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=6.2e-12 Score=139.98 Aligned_cols=75 Identities=29% Similarity=0.441 Sum_probs=37.9
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeeccc-CcccChhhhcccCCCEEEcc-CCcccccchhhcCCcCCcEEeceee
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDLK-NTLVRELPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~l~-~~~~~~lp~~~~~L~~L~~L~l~~n 77 (437)
.|++++|.+..+|..+..+++|++|+|+++. ++.+| .+..+++|++|+++ ++.+..+|..+++|++|+.|++++|
T Consensus 615 ~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred EEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 3445555555555545555555555555443 34443 24445555555555 3344555555555555555555543
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.19 E-value=3.8e-11 Score=133.81 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=76.2
Q ss_pred CCccccCC-CCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccccc
Q 047084 13 LPEGVGNL-FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG 91 (437)
Q Consensus 13 lp~~~~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~ 91 (437)
+|..+..+ .+|+.|.+.++.+..+|..+ .+.+|++|++.++.+..+|.++..+++|+.|+|+++...+ .+| .
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-----~ip-~ 652 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-----EIP-D 652 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-----cCC-c
Confidence 45555444 34666666666666666554 3556666666666666666666666666666666543221 233 2
Q ss_pred ccCCccCcEEEeecCC-----hHhHhhccchHhc----ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc-hhhhhh
Q 047084 92 FGSLTNLQKLCIIEAD-----SEALKELMKLRQL----RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL-SFKDAL 161 (437)
Q Consensus 92 ~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l----~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~ 161 (437)
+..+++|++|++++|. +..+..|.+|+.+ .+.+..+|..+ ++++|+.|++++|...+.+|... ++..+.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 5556666666666553 3333344444333 12345555443 45566666666655444444322 233334
Q ss_pred cCCCCC
Q 047084 162 VHPEQY 167 (437)
Q Consensus 162 l~~n~l 167 (437)
++.|.+
T Consensus 732 L~~n~i 737 (1153)
T PLN03210 732 LDETAI 737 (1153)
T ss_pred cCCCcc
Confidence 444443
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=2.2e-11 Score=104.97 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=32.5
Q ss_pred CEEEecCCCCCcCCcccc-CCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhh-cCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~n~ 78 (437)
|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|..++ .+..+++|++|++++|.++.+++.+ ..+++|++|++++|+
T Consensus 22 ~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 22 RELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred cccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 45677777776663 443 4667777777777776663 4666777777777777777776554 356777777777777
Q ss_pred cccccccccccccccCCccCcEEEeecCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
|.... ++ ..+..+++|+.|++.+|+
T Consensus 100 I~~l~---~l-~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 100 ISDLN---EL-EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp --SCC---CC-GGGGG-TT--EEE-TT-G
T ss_pred CCChH---Hh-HHHHcCCCcceeeccCCc
Confidence 76432 22 335566677777776665
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=2.5e-11 Score=120.43 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=73.5
Q ss_pred ccCCCCCcEEEeecccCcccChhhhccc-CCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCC
Q 047084 17 VGNLFNLHYLSVKNTKVKIIPKSIGNLL-GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSL 95 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l 95 (437)
+..+..++.|++.+|.+..+|+....+. +|+.|+++.|.+..+|..++.+++|+.|++++|+++ ++|...+.+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~------~l~~~~~~~ 185 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS------DLPKLLSNL 185 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh------hhhhhhhhh
Confidence 3334445555555555554544444442 455555555555555444455555555555555544 334333344
Q ss_pred ccCcEEEeecCChHhHh-------hccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC--C-CCCCchhhhhhcCCC
Q 047084 96 TNLQKLCIIEADSEALK-------ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA--D-SPSPLSFKDALVHPE 165 (437)
Q Consensus 96 ~~L~~L~l~~n~~~~~~-------~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~--~-~p~~~~~~~~~l~~n 165 (437)
+.|+.|++++|+...++ .|..|...+|....++..+..+.++..+.+++|++.. . +....++..+.++.|
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 45555555555422221 1222322334333444444445555555555555441 0 111112333444444
Q ss_pred CC---CCCchhccceeeecCCCCcc
Q 047084 166 QY---RSSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 166 ~l---~~~~~~~~~~~L~L~~n~l~ 187 (437)
++ ........++.|++++|.++
T Consensus 266 ~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 266 QISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccccccccCccCEEeccCcccc
Confidence 44 11122334466777777775
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=3.1e-11 Score=104.07 Aligned_cols=122 Identities=25% Similarity=0.384 Sum_probs=42.2
Q ss_pred EecCCCCCcCCccccCCCCCcEEEeecccCcccChhhh-cccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084 4 DLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIG-NLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG 82 (437)
Q Consensus 4 ~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~ 82 (437)
.|..+.|.++| .+.+...++.|+|++|.|..+. .++ .+.+|+.|++++|.++.++ ++..|++|++|++++|+++
T Consensus 3 ~lt~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-- 77 (175)
T PF14580_consen 3 RLTANMIEQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-- 77 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----
T ss_pred ccccccccccc-cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC--
Confidence 45556666665 3455668899999999998773 566 5899999999999999986 5888999999999999998
Q ss_pred cccccccccc-cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 83 FAAAKLHEGF-GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 83 ~~~~~lp~~~-~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.+.+.+ ..+++|+.|++++|+...+..+. .+..+++|+.|+|.+|+++
T Consensus 78 ----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~--------------~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 ----SISEGLDKNLPNLQELYLSNNKISDLNELE--------------PLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ----S-CHHHHHH-TT--EEE-TTS---SCCCCG--------------GGGG-TT--EEE-TT-GGG
T ss_pred ----ccccchHHhCCcCCEEECcCCcCCChHHhH--------------HHHcCCCcceeeccCCccc
Confidence 444445 46899999999998765543322 3456788899999999987
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=2.4e-11 Score=116.78 Aligned_cols=234 Identities=17% Similarity=0.155 Sum_probs=130.3
Q ss_pred EEEecCCCC--CcCCccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccc-------cchhhcCCc
Q 047084 2 VLDLEDAPV--DYLPEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRE-------LPVEIRNLK 67 (437)
Q Consensus 2 ~L~L~~n~l--~~lp~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-------lp~~~~~L~ 67 (437)
.|+|..+.+ ...+..+..+.+|+.|+++++.++ .++..+...+.|++|+++.+.++. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 477777776 344555667777888888888873 355566677778888888655552 334567788
Q ss_pred CCcEEeceeeccccccccccccccccCCc---cCcEEEeecCChH---------hHhhc-cchHhc---ccccc-----c
Q 047084 68 RLRYLMVYQYNYTAGFAAAKLHEGFGSLT---NLQKLCIIEADSE---------ALKEL-MKLRQL---RNLLK-----T 126 (437)
Q Consensus 68 ~L~~L~l~~n~l~~~~~~~~lp~~~~~l~---~L~~L~l~~n~~~---------~~~~L-~~L~~l---~n~~~-----~ 126 (437)
+|+.|++++|.+.+.. +..+..+. +|++|++++|... .+..+ ..|+.+ ++.+. .
T Consensus 82 ~L~~L~l~~~~~~~~~-----~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 82 GLQELDLSDNALGPDG-----CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred ceeEEEccCCCCChhH-----HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 8888888888886422 33344343 4888888888632 22222 333333 34333 2
Q ss_pred CCchhhcCCCCCeEEeeCCcCCCC----CCC----CchhhhhhcCCCCCCCC---------chhccceeeecCCCCcccC
Q 047084 127 IPPPLAADRSTKKARFRSHEVDAD----SPS----PLSFKDALVHPEQYRSS---------EDAEMEEEWDLEPGDVTIG 189 (437)
Q Consensus 127 ip~~~~~l~~L~~L~l~~N~l~~~----~p~----~~~~~~~~l~~n~l~~~---------~~~~~~~~L~L~~n~l~~~ 189 (437)
++..+..+.+|++|++++|.+++. ++. ...+..+.++.|.+... .....++.|++++|+++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~- 235 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD- 235 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-
Confidence 334556667788888888888742 111 11344555555655211 111234667777776641
Q ss_pred CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHH----HHHHhcccCCCceEEEEcCCcEEE
Q 047084 190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC----NRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 190 ~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~----~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
.....+...... ....+..+.+++|.++ ..+.........++.++++.|.+.
T Consensus 236 ------------~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 236 ------------AGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred ------------HHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 001111100000 0012223334444432 233344445578888999988876
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=4.3e-11 Score=108.13 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=73.0
Q ss_pred CCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084 20 LFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ 99 (437)
Q Consensus 20 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~ 99 (437)
...|+.||||+|.|+.+..++.-++.++.|+++.|.+..+.. +..|++|+.||||+|.++ ++...-..+.+++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls------~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA------ECVGWHLKLGNIK 355 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH------hhhhhHhhhcCEe
Confidence 345666666666666655555556666666666666555544 556666666666666655 2222223455556
Q ss_pred EEEeecCChHhHhhccchHhc------ccccccCC--chhhcCCCCCeEEeeCCcCCC
Q 047084 100 KLCIIEADSEALKELMKLRQL------RNLLKTIP--PPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 100 ~L~l~~n~~~~~~~L~~L~~l------~n~~~~ip--~~~~~l~~L~~L~l~~N~l~~ 149 (437)
+|.|+.|..+.++.|..|-.+ .|.+..+. ..+++++.|+.+.|.+|++++
T Consensus 356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666655555544444333 23333332 357888999999999999984
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=2.5e-10 Score=109.72 Aligned_cols=236 Identities=17% Similarity=0.149 Sum_probs=119.8
Q ss_pred EEEecCCCC-----CcCCccccCCCCCcEEEeecccCcc-------cChhhhcccCCCEEEccCCccc-ccchhhcCCcC
Q 047084 2 VLDLEDAPV-----DYLPEGVGNLFNLHYLSVKNTKVKI-------IPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKR 68 (437)
Q Consensus 2 ~L~L~~n~l-----~~lp~~~~~l~~L~~L~L~~n~l~~-------lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~ 68 (437)
+|+++++.+ ..+++.+...+.|+.|+++++.++. ++..+..+++|+.|+++++.+. ..+..+..+.+
T Consensus 27 ~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 106 (319)
T cd00116 27 VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR 106 (319)
T ss_pred EEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc
Confidence 566666665 2234445556667777777666542 2234555667777777755443 33444444444
Q ss_pred ---CcEEeceeeccccccccccccccccCC-ccCcEEEeecCChH---------hHhhccchHhc---ccccc-----cC
Q 047084 69 ---LRYLMVYQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEADSE---------ALKELMKLRQL---RNLLK-----TI 127 (437)
Q Consensus 69 ---L~~L~l~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~~~---------~~~~L~~L~~l---~n~~~-----~i 127 (437)
|++|++++|++++.. ...+...+..+ ++|+.|++++|... .+..+..|+.+ .+.++ .+
T Consensus 107 ~~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 107 SSSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred cCcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 777777777665311 11223344455 66777777766522 22222233333 23222 23
Q ss_pred CchhhcCCCCCeEEeeCCcCCCC--------CCCCchhhhhhcCCCCCCC------Cch----hccceeeecCCCCcccC
Q 047084 128 PPPLAADRSTKKARFRSHEVDAD--------SPSPLSFKDALVHPEQYRS------SED----AEMEEEWDLEPGDVTIG 189 (437)
Q Consensus 128 p~~~~~l~~L~~L~l~~N~l~~~--------~p~~~~~~~~~l~~n~l~~------~~~----~~~~~~L~L~~n~l~~~ 189 (437)
+..+...++|+.|++++|.+++. ++...++..+.+++|.+.- ... ...++.|++++|.++.
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~- 264 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD- 264 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc-
Confidence 33445556777777777776522 1112235556666666521 001 1345778888888750
Q ss_pred CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHH----HHhcccCC-CceEEEEcCCcEE
Q 047084 190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNR----LKVMWHQI-HDFSVIDLENNYF 253 (437)
Q Consensus 190 ~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~----l~~~w~~~-~~l~~l~l~~N~f 253 (437)
.....+.+..+.. .++...+++.|.+... ...++... ..+..+++++|.|
T Consensus 265 ---------~~~~~l~~~~~~~-----~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 265 ---------DGAKDLAEVLAEK-----ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ---------HHHHHHHHHHhcC-----CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 0111111111111 2233345555555533 55566555 6777888877643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=1.3e-10 Score=115.31 Aligned_cols=160 Identities=22% Similarity=0.337 Sum_probs=132.2
Q ss_pred CEEEecCCCCCcCCccccCCC-CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLF-NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l 79 (437)
+.|++.+|.+.++|+....+. +|+.|++++|++..+|..+.+++.|+.|++++|.+..+|...+.+++|+.|++++|++
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred eEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc
Confidence 368899999999998888885 9999999999999998889999999999999999999999888999999999999999
Q ss_pred ccccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP 152 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p 152 (437)
+ .+|.....+.+|++|.+++|. +..+..+..+..+ +|.+..++..++.++++++|++++|+++ .++
T Consensus 199 ~------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~ 271 (394)
T COG4886 199 S------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SIS 271 (394)
T ss_pred c------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-ccc
Confidence 8 678777778889999999994 3334444444443 5667777888899999999999999998 444
Q ss_pred C---CchhhhhhcCCCCC
Q 047084 153 S---PLSFKDALVHPEQY 167 (437)
Q Consensus 153 ~---~~~~~~~~l~~n~l 167 (437)
. ...+..+.+++|.+
T Consensus 272 ~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 272 SLGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccCccCEEeccCccc
Confidence 3 33566667777765
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.94 E-value=1.7e-09 Score=112.89 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=80.3
Q ss_pred CCcEEEeecccC-cccChhhhcccCCCEEEccCCcc-cccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084 22 NLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTLV-RELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ 99 (437)
Q Consensus 22 ~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~~-~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~ 99 (437)
.++.|+|++|.+ +.+|..++.+++|+.|+|++|.+ +.+|..++.|++|+.|+|++|+++|.. |+.++++++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-----P~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-----PESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-----chHHhcCCCCC
Confidence 377888888888 47888888888888888885555 578888888888888888888888754 78888888888
Q ss_pred EEEeecCChHhHhhccchHhcccccccCCchhhc-CCCCCeEEeeCCcCCCCCC
Q 047084 100 KLCIIEADSEALKELMKLRQLRNLLKTIPPPLAA-DRSTKKARFRSHEVDADSP 152 (437)
Q Consensus 100 ~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~-l~~L~~L~l~~N~l~~~~p 152 (437)
.|+|++|++.... |..+.. ..++..+++++|......|
T Consensus 494 ~L~Ls~N~l~g~i---------------P~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 494 ILNLNGNSLSGRV---------------PAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EEECcCCcccccC---------------ChHHhhccccCceEEecCCccccCCC
Confidence 8888888632110 111111 2345677888887664333
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=8e-09 Score=107.83 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=80.4
Q ss_pred CCCEEEccCCcc-cccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccc
Q 047084 45 GLETLDLKNTLV-RELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNL 123 (437)
Q Consensus 45 ~L~~L~l~~~~~-~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~ 123 (437)
.++.|+|++|.+ +.+|..+++|++|+.|+|++|.++|.. |..++.+++|+.|+|++|+ +
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-----P~~~~~l~~L~~LdLs~N~---------------l 478 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-----PPSLGSITSLEVLDLSYNS---------------F 478 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-----ChHHhCCCCCCEEECCCCC---------------C
Confidence 478899995554 588999999999999999999999754 8889999999999999974 3
Q ss_pred cccCCchhhcCCCCCeEEeeCCcCCCCCCCCch
Q 047084 124 LKTIPPPLAADRSTKKARFRSHEVDADSPSPLS 156 (437)
Q Consensus 124 ~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 156 (437)
.+.+|..++++++|+.|+|++|+++|.+|..+.
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 457899999999999999999999999998664
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.4e-09 Score=74.58 Aligned_cols=58 Identities=43% Similarity=0.610 Sum_probs=38.2
Q ss_pred CCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecc
Q 047084 22 NLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 22 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l 79 (437)
+|++|++++|+|..+|+ .|.++++|++|++++|.+..+|++ |.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 56677777777766663 455677777777776666666553 66777777777766653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=6.7e-09 Score=94.11 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=81.6
Q ss_pred hhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhH-------
Q 047084 39 SIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL------- 111 (437)
Q Consensus 39 ~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~------- 111 (437)
.+..+..|++|||+.|.|+.+.++..-+|+++.|++|+|.+. .+ ..+..+.+|+.||||+|....+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~------~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR------TV-QNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEecccccee------ee-hhhhhcccceEeecccchhHhhhhhHhhh
Confidence 344567899999999999999999999999999999999998 22 3488899999999999975443
Q ss_pred hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 112 KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 112 ~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.+++.|....|.+..+. ++..+-+|..||+++|+|.
T Consensus 352 GNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred cCEeeeehhhhhHhhhh-hhHhhhhheeccccccchh
Confidence 45555555567766663 5677778888888888887
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=3.6e-08 Score=105.55 Aligned_cols=100 Identities=26% Similarity=0.314 Sum_probs=75.7
Q ss_pred EEEecCCC--CCcCCcc-ccCCCCCcEEEeeccc-CcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceee
Q 047084 2 VLDLEDAP--VDYLPEG-VGNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 2 ~L~L~~n~--l~~lp~~-~~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n 77 (437)
+|-+.+|. +..++.. |..++.|++|||++|. ++++|..+++|.+|++|+++.+.+..+|.++++|++|.+|++..+
T Consensus 549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 45566665 6666654 5668888888888775 578888888888888888888888888888888888888888877
Q ss_pred ccccccccccccccccCCccCcEEEeecC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEA 106 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n 106 (437)
..... +|.....|++|++|.+..-
T Consensus 629 ~~l~~-----~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 629 GRLES-----IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccc-----ccchhhhcccccEEEeecc
Confidence 65422 2455566888888887654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=2.6e-08 Score=70.61 Aligned_cols=59 Identities=32% Similarity=0.425 Sum_probs=51.2
Q ss_pred cCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC
Q 047084 44 LGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 44 ~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
++|++|++++|.+..+|++ |.++++|++|++++|.++... |..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-----~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-----PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-----TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-----HHHHcCCCCCCEEeCcCCc
Confidence 4789999999999999975 899999999999999998432 4568999999999999885
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=2e-08 Score=100.16 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=119.4
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG 82 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~ 82 (437)
++++.|.++.+-..+..+.+|+.|++.+|+|..+...+..+.+|++|++++|.|+.+.. +..++.|+.|++++|.++..
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhc
Confidence 45667777765455788889999999999988776557889999999999998888764 66777799999999998832
Q ss_pred cccccccccccCCccCcEEEeecCChHhHhh-----ccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084 83 FAAAKLHEGFGSLTNLQKLCIIEADSEALKE-----LMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP-- 152 (437)
Q Consensus 83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~-----L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p-- 152 (437)
..+..+..|+.+++++|....+.. +..+..+ +|.+..+. .+..+..+..+++..|.++-.-+
T Consensus 156 -------~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~l~ 227 (414)
T KOG0531|consen 156 -------SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEGLN 227 (414)
T ss_pred -------cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccCcc
Confidence 346668889999999987433333 3333333 45554443 34444555566888888873222
Q ss_pred CCch--hhhhhcCCCCCCCC----chhccceeeecCCCCcc
Q 047084 153 SPLS--FKDALVHPEQYRSS----EDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 153 ~~~~--~~~~~l~~n~l~~~----~~~~~~~~L~L~~n~l~ 187 (437)
.... +.++.+.+|.+... ........|++.+|++.
T Consensus 228 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 1222 67788888887332 22333456788888875
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.51 E-value=7.2e-09 Score=83.39 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=26.8
Q ss_pred CCCcEEEeecccCcccChhhhc-ccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 21 FNLHYLSVKNTKVKIIPKSIGN-LLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 21 ~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
.+|+..+|++|.+..+|+.|.. ++-+++|++++|.+..+|.++..|+.|+.|+++.|.+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence 3344444444444444444332 23444444444444444444444444444444444443
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=5.1e-08 Score=97.21 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=115.9
Q ss_pred CCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccC
Q 047084 19 NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNL 98 (437)
Q Consensus 19 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L 98 (437)
.+..++.+.++.|.|..+-..+..+++|+.|++.+|.+..+...+..+++|++|++++|.|+... .+..++.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-------~l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-------GLSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-------chhhccch
Confidence 46677777788888876545577888888888888888888776778888888888888888432 45666678
Q ss_pred cEEEeecCChHhHhhcc---chHhc---ccccccCCch-hhcCCCCCeEEeeCCcCCCCCCCCc---hhhhhhcCCCCCC
Q 047084 99 QKLCIIEADSEALKELM---KLRQL---RNLLKTIPPP-LAADRSTKKARFRSHEVDADSPSPL---SFKDALVHPEQYR 168 (437)
Q Consensus 99 ~~L~l~~n~~~~~~~L~---~L~~l---~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~~~p~~~---~~~~~~l~~n~l~ 168 (437)
+.|++++|....+.++. .|+.+ .|.+..+... +..+.+++.+.+..|.+. .+...- .+..+.+..|.+.
T Consensus 143 ~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 143 KELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred hhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccchHHHHHHHHhhcccccce
Confidence 88888888855554433 33322 5556666543 467788888888888887 322211 2223345666662
Q ss_pred CCch---hcc--ceeeecCCCCcccC-----CCCCCCeEeechHHHhhh
Q 047084 169 SSED---AEM--EEEWDLEPGDVTIG-----DDGTMPTIKFSKRIQDKL 207 (437)
Q Consensus 169 ~~~~---~~~--~~~L~L~~n~l~~~-----~~~~lp~l~l~~n~l~~l 207 (437)
.... ... +..+.+++|++.-. ....++.+.+.++.+...
T Consensus 222 ~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 222 KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred eccCcccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 2221 122 46678888887643 123444455555544433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=2.1e-07 Score=99.69 Aligned_cols=112 Identities=27% Similarity=0.339 Sum_probs=71.9
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeeccc--CcccChh-hhcccCCCEEEcc-CCcccccchhhcCCcCCcEEeceee
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTK--VKIIPKS-IGNLLGLETLDLK-NTLVRELPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~--l~~lp~~-~~~l~~L~~L~l~-~~~~~~lp~~~~~L~~L~~L~l~~n 77 (437)
...+-+|.+..++.... .+.|++|-+.+|. +..++.. |..|+.|++|||+ |..++.+|.++++|-+|++|+++..
T Consensus 527 r~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence 34455566655554432 2357777777775 5566554 4447777777777 4456777777777777777777777
Q ss_pred ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL 120 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l 120 (437)
.++ .+|.+++++.+|.+|++..+. +.....|.+|+.+
T Consensus 606 ~I~------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 606 GIS------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred Ccc------ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 766 667777777777777777665 2223335555555
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=6.9e-09 Score=104.10 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=68.3
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTA 81 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~ 81 (437)
.+.++|.+..+..++.-++.|+.|+|++|++..+. .+..+++|++|||+.|.+..+|.- ...++ |+.|.+++|.++.
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence 35667777777667777778888888888876663 677788888888887777777763 23333 7778888887762
Q ss_pred ccccccccccccCCccCcEEEeecCC
Q 047084 82 GFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 82 ~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
+ .++.+|.+|+.||+++|-
T Consensus 247 ------L-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 247 ------L-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred ------h-hhHHhhhhhhccchhHhh
Confidence 2 246677778888888775
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.8e-07 Score=87.85 Aligned_cols=164 Identities=14% Similarity=0.079 Sum_probs=92.7
Q ss_pred cCCCCCcEEEeecccCcccC--hhhhcccCCCEEEccCCcccccch---hhcCCcCCcEEeceeeccccccccccccccc
Q 047084 18 GNLFNLHYLSVKNTKVKIIP--KSIGNLLGLETLDLKNTLVRELPV---EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGF 92 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~l~~~~~~~lp~---~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~ 92 (437)
+++.+|+...|.+..+...+ .....+++++.|+|+.|.+...-+ -...|++|+.|+++.|++..... + ..-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--s--~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--S--NTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc--c--cch
Confidence 35667777777777765544 355667778888887776665433 24577788888888887763220 0 011
Q ss_pred cCCccCcEEEeecCC---------hHhHhhccchHhcccc-cccCCchhhcCCCCCeEEeeCCcCCCCCCC------Cch
Q 047084 93 GSLTNLQKLCIIEAD---------SEALKELMKLRQLRNL-LKTIPPPLAADRSTKKARFRSHEVDADSPS------PLS 156 (437)
Q Consensus 93 ~~l~~L~~L~l~~n~---------~~~~~~L~~L~~l~n~-~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~------~~~ 156 (437)
..+++|+.|.++.|. ...++++..|..-.|- +..-......++.|+.|+|++|++- .++. ...
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccc
Confidence 356677777777776 2334555555544442 2111122334566777788777775 2221 114
Q ss_pred hhhhhcCCCCCCCCch-----------hccceeeecCCCCc
Q 047084 157 FKDALVHPEQYRSSED-----------AEMEEEWDLEPGDV 186 (437)
Q Consensus 157 ~~~~~l~~n~l~~~~~-----------~~~~~~L~L~~n~l 186 (437)
+..+.++.+.++.... ...++.|+++.|++
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 4455555555522111 11246688888877
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.6e-07 Score=88.00 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=75.1
Q ss_pred EEecCCCCCcCCc--cccCCCCCcEEEeecccCc---ccChhhhcccCCCEEEccCCcccccchh--hcCCcCCcEEece
Q 047084 3 LDLEDAPVDYLPE--GVGNLFNLHYLSVKNTKVK---IIPKSIGNLLGLETLDLKNTLVRELPVE--IRNLKRLRYLMVY 75 (437)
Q Consensus 3 L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~l~~~~~~~lp~~--~~~L~~L~~L~l~ 75 (437)
..|.+..+...+. ....|++++.||||.|-+. .+-.-...|++|+.|+++.|.+...-.+ -..+.+|+.|.++
T Consensus 126 IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~ 205 (505)
T KOG3207|consen 126 ISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLN 205 (505)
T ss_pred eeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEec
Confidence 3455555555442 4566777777777777663 2223345577777777775554432221 2345666666676
Q ss_pred eeccccccccccccccccCCccCcEEEeecCC--------hHhHhhccchHhcccccccCC--chhhcCCCCCeEEeeCC
Q 047084 76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD--------SEALKELMKLRQLRNLLKTIP--PPLAADRSTKKARFRSH 145 (437)
Q Consensus 76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~--------~~~~~~L~~L~~l~n~~~~ip--~~~~~l~~L~~L~l~~N 145 (437)
.+.++.. ++-..+...++|+.|+|..|. ...+..|+.|+..+|.+...+ ...+.++.|..|+++.+
T Consensus 206 ~CGls~k----~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 206 SCGLSWK----DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred cCCCCHH----HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 6666622 222223445556666666552 122334444444455444444 33445555555555555
Q ss_pred cCC
Q 047084 146 EVD 148 (437)
Q Consensus 146 ~l~ 148 (437)
.++
T Consensus 282 gi~ 284 (505)
T KOG3207|consen 282 GIA 284 (505)
T ss_pred Ccc
Confidence 554
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.5e-07 Score=75.95 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=66.3
Q ss_pred CCcEEEeecccCcccChhhhcc---cCCCEEEccCCcccccchhhc-CCcCCcEEeceeeccccccccccccccccCCcc
Q 047084 22 NLHYLSVKNTKVKIIPKSIGNL---LGLETLDLKNTLVRELPVEIR-NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTN 97 (437)
Q Consensus 22 ~L~~L~L~~n~l~~lp~~~~~l---~~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~ 97 (437)
-+..++|+++++..+++....+ ..|...+|++|.+..+|+.|. ..+.++.|+|++|+++ ++|+.+..++.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis------dvPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS------DVPEELAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh------hchHHHhhhHH
Confidence 4667899999988777766554 455566889999999999875 4458999999999998 78999999999
Q ss_pred CcEEEeecCC
Q 047084 98 LQKLCIIEAD 107 (437)
Q Consensus 98 L~~L~l~~n~ 107 (437)
|+.|+++.|.
T Consensus 102 Lr~lNl~~N~ 111 (177)
T KOG4579|consen 102 LRSLNLRFNP 111 (177)
T ss_pred hhhcccccCc
Confidence 9999999886
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.5e-06 Score=56.65 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=17.4
Q ss_pred CCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 45 GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 45 ~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
+|++|++++|.++.+|+.+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 345555555555555544555555555555555544
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=2.3e-06 Score=79.50 Aligned_cols=218 Identities=14% Similarity=0.165 Sum_probs=119.7
Q ss_pred ccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccc----ccchh-------hcCCcCCcEEeceeeccc
Q 047084 17 VGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVR----ELPVE-------IRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~----~lp~~-------~~~L~~L~~L~l~~n~l~ 80 (437)
+..+..++.++||+|.++ .+-+.+.+.++|+..++++-.++ .+|+. +...++|++|+||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 456788999999999996 34456777889999999855544 45554 446679999999999986
Q ss_pred cccccccccccccCCccCcEEEeecCChHhH------hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL------KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP 154 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~------~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~ 154 (437)
-.. .+.+-+-+.+++.|++|+|.+|..... ..|..|... ..++.-+.|+.+...+|++. ..+..
T Consensus 106 ~~g-~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~--------kk~~~~~~Lrv~i~~rNrle-n~ga~ 175 (382)
T KOG1909|consen 106 PKG-IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN--------KKAASKPKLRVFICGRNRLE-NGGAT 175 (382)
T ss_pred ccc-hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH--------hccCCCcceEEEEeeccccc-cccHH
Confidence 221 112223356788999999999972221 112222210 11122345666666666655 11111
Q ss_pred ---------chhhhhhcCCCCCCC---------CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEE
Q 047084 155 ---------LSFKDALVHPEQYRS---------SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVV 216 (437)
Q Consensus 155 ---------~~~~~~~l~~n~l~~---------~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~ 216 (437)
..+.+..+..|.|.+ +.....++.|||..|-|+.- ..-.+.+.-+.|...-.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----------gs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----------GSVALAKALSSWPHLRE 245 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----------HHHHHHHHhcccchhee
Confidence 123333444455422 12234567899999988711 11222223333432222
Q ss_pred EEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 217 VKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 217 ~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
.++.+..++..--.......-...+.+.++.++.|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 33333334333322333333334566677777766654
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.4e-06 Score=55.03 Aligned_cols=41 Identities=32% Similarity=0.507 Sum_probs=30.4
Q ss_pred CCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch
Q 047084 21 FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV 61 (437)
Q Consensus 21 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~ 61 (437)
++|++|++++|+|..+|+.+++|++|++|++++|.++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 36788888888888887778888888888888777776653
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=2.1e-06 Score=79.77 Aligned_cols=105 Identities=13% Similarity=0.057 Sum_probs=53.0
Q ss_pred EEEecCCCCC-cCCc----cccCCCCCcEEEeecccCcccC-----hh---------hhcccCCCEEEccCCcccccch-
Q 047084 2 VLDLEDAPVD-YLPE----GVGNLFNLHYLSVKNTKVKIIP-----KS---------IGNLLGLETLDLKNTLVRELPV- 61 (437)
Q Consensus 2 ~L~L~~n~l~-~lp~----~~~~l~~L~~L~L~~n~l~~lp-----~~---------~~~l~~L~~L~l~~~~~~~lp~- 61 (437)
+||||+|.++ .-++ -+..+..|+.|+|.+|.++... .+ +..-+.|+++..++|++..-+.
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence 5666666652 1111 1344556666666666554221 11 1223456666666665554432
Q ss_pred ----hhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC
Q 047084 62 ----EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 62 ----~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
.|...+.|+.+.++.|.|.-.. ...+...|..+++|+.|+|.+|-
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG-~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEG-VTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHHHHhccccceEEEecccccCch-hHHHHHHHHhCCcceeeecccch
Confidence 2555566666666666654111 01223345566666666666664
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.3e-05 Score=69.09 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=68.9
Q ss_pred EEEecCCCCCcCCccc-cCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhc-CCcCCcEEeceeecc
Q 047084 2 VLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIR-NLKRLRYLMVYQYNY 79 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~n~l 79 (437)
.++|++.++..+.. + .-+.....+||++|.+..+ ..|..+..|.+|.+++|.|..+.+.+. -+++|+.|.|.+|+|
T Consensus 23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccccccccchhh-ccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 45666666544422 2 2245677788888887655 346677888888888888888877754 456788888888888
Q ss_pred ccccccccccccccCCccCcEEEeecCChHh
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSEA 110 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~ 110 (437)
.-.. ++ ..+..+++|++|.+-+|+...
T Consensus 101 ~~l~---dl-~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 101 QELG---DL-DPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred hhhh---hc-chhccCCccceeeecCCchhc
Confidence 7221 22 235677788888888886433
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=1.4e-06 Score=87.93 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=62.6
Q ss_pred CcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEE
Q 047084 23 LHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLC 102 (437)
Q Consensus 23 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~ 102 (437)
|.+.+.++|.+..+..++.-++.|++|+|+.|++..+. .+..|++|++|||++|.++ .+|.--..-.+|+.|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~------~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR------HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc------cccccchhhhhheeee
Confidence 44555566666555556666666667777766666555 5666666777777777666 3443211112366666
Q ss_pred eecCChHhHhhccchHhc------ccccccCC--chhhcCCCCCeEEeeCCcCC
Q 047084 103 IIEADSEALKELMKLRQL------RNLLKTIP--PPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 103 l~~n~~~~~~~L~~L~~l------~n~~~~ip--~~~~~l~~L~~L~l~~N~l~ 148 (437)
+++|....+..+.+|+.| .|++.... ..++.+..|+.|+|.+|.+-
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666654443333322222 23332222 23444555555555555553
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=1.9e-05 Score=68.16 Aligned_cols=114 Identities=23% Similarity=0.321 Sum_probs=70.8
Q ss_pred CcEEEeecccCcccChhhhc-ccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccccccc-CCccCcE
Q 047084 23 LHYLSVKNTKVKIIPKSIGN-LLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFG-SLTNLQK 100 (437)
Q Consensus 23 L~~L~L~~n~l~~lp~~~~~-l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~-~l~~L~~ 100 (437)
=+.++|++.++..+. .++. +.+...+||++|.+..++. |..++.|.+|.+++|+|+ .+...+. -+++|+.
T Consensus 21 e~e~~LR~lkip~ie-nlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt------~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE-NLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRIT------RIDPDLDTFLPNLKT 92 (233)
T ss_pred ccccccccccccchh-hccccccccceecccccchhhccc-CCCccccceEEecCCcce------eeccchhhhccccce
Confidence 456777777664332 2333 4577888999888887764 778889999999999998 3444554 4567999
Q ss_pred EEeecCChHhH---------hhccchHhcccccccCC----chhhcCCCCCeEEeeC
Q 047084 101 LCIIEADSEAL---------KELMKLRQLRNLLKTIP----PPLAADRSTKKARFRS 144 (437)
Q Consensus 101 L~l~~n~~~~~---------~~L~~L~~l~n~~~~ip----~~~~~l~~L~~L~l~~ 144 (437)
|.+.+|+...+ +.|..|..+.|....-+ -.+..+++|+.||++.
T Consensus 93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred EEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999874433 23333333334333322 1244555666665443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=2.9e-05 Score=75.39 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=37.1
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecc-cCcccChhhhcccCCCEEEccCC-cccccchhhcCCcCCcEEeceeecc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNT-KVKIIPKSIGNLLGLETLDLKNT-LVRELPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~~-~~~~lp~~~~~L~~L~~L~l~~n~l 79 (437)
+|++++|.++.+| .+ -.+|+.|.++++ .+..+|..+. .+|++|.++++ .+..+|.. |+.|+++.|..
T Consensus 56 ~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~ 124 (426)
T PRK15386 56 RLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSAT 124 (426)
T ss_pred EEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCC
Confidence 5667777666666 11 235677777653 3455554442 46677777643 55555543 44555554443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00012 Score=71.15 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=72.3
Q ss_pred cCCCCCcEEEeecccCcccChhhhcccCCCEEEcc-CCcccccchhhcCCcCCcEEeceee-ccccccccccccccccCC
Q 047084 18 GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLK-NTLVRELPVEIRNLKRLRYLMVYQY-NYTAGFAAAKLHEGFGSL 95 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~-~~~~~~lp~~~~~L~~L~~L~l~~n-~l~~~~~~~~lp~~~~~l 95 (437)
..+.+++.|++++|.|..+|. --.+|++|.++ ++.+..+|..+. ++|++|++++| .+. .+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~------sLP~----- 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS------GLPE----- 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc------cccc-----
Confidence 347899999999999988882 23479999998 577788887653 58999999988 544 4565
Q ss_pred ccCcEEEeecCChHhHh----hccchHhcc-ccc--ccCCchhhcC-CCCCeEEeeCCcCC
Q 047084 96 TNLQKLCIIEADSEALK----ELMKLRQLR-NLL--KTIPPPLAAD-RSTKKARFRSHEVD 148 (437)
Q Consensus 96 ~~L~~L~l~~n~~~~~~----~L~~L~~l~-n~~--~~ip~~~~~l-~~L~~L~l~~N~l~ 148 (437)
+|+.|+++.+....+. +|..|..-. +.. ..+|. .+ ++|++|++++|...
T Consensus 113 -sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 113 -SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI 169 (426)
T ss_pred -ccceEEeCCCCCcccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc
Confidence 4666777665522222 333333211 111 11121 12 57999999988866
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=3.8e-05 Score=70.12 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=24.5
Q ss_pred cCCCCCcEEEeecccCcccChhh-hcccCCCEEEccCCccc--ccchhhcCCcCCcEEeceeec
Q 047084 18 GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVR--ELPVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~n~ 78 (437)
.+|++|++|+|+.|.+...-.++ ..+.+|++|-|.++.+. .....+..+|.++.|++|.|+
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 34455555555555442111111 22334444444433332 122224444455555555443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=0.00013 Score=76.62 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=78.9
Q ss_pred CEEEecCCCC--CcCCcccc-CCCCCcEEEeecccCc--ccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEece
Q 047084 1 KVLDLEDAPV--DYLPEGVG-NLFNLHYLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVY 75 (437)
Q Consensus 1 ~~L~L~~n~l--~~lp~~~~-~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~ 75 (437)
|+||+++... ..-|..++ -|+.|+.|.+++-.+. ++-.-..++++|..||++++.++.+ .+++.|++|+.|.+.
T Consensus 125 ~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 125 QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence 3566666542 33344453 3677888888776652 3333445677888888887777777 567788888888777
Q ss_pred eeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084 76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
+=.+.... .+ ..+.+|++|+.||+|......-..+.. ..+ +.-..++.|+.||.|+..++.
T Consensus 204 nLe~e~~~---~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~--------qYl-ec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 204 NLEFESYQ---DL-IDLFNLKKLRVLDISRDKNNDDTKIIE--------QYL-ECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCCCCchh---hH-HHHhcccCCCeeeccccccccchHHHH--------HHH-HhcccCccccEEecCCcchhH
Confidence 66655221 11 245677888888887654211110000 000 111236788888888777763
No 57
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=97.12 E-value=0.00026 Score=36.28 Aligned_cols=18 Identities=33% Similarity=0.851 Sum_probs=16.2
Q ss_pred ccccccccccccCCCCCC
Q 047084 375 IICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~ 392 (437)
..|+.||..||....||.
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 369999999999999984
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=4.6e-05 Score=68.98 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=28.6
Q ss_pred cCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh--hcCCcCCcEEeceeeccc
Q 047084 18 GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE--IRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~--~~~L~~L~~L~l~~n~l~ 80 (437)
.+|+.|++|.||-|+|+.+ ..+..+++|++|+|..|.|..+.+- +.+|++|+.|-|..|.-.
T Consensus 38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 3444555555555555444 2344444555555554444444331 344444444444444433
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00037 Score=73.32 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=61.3
Q ss_pred ccCCCEEEccCCc-c-cccchhhc-CCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCCh---HhHhhccc
Q 047084 43 LLGLETLDLKNTL-V-RELPVEIR-NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS---EALKELMK 116 (437)
Q Consensus 43 l~~L~~L~l~~~~-~-~~lp~~~~-~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~---~~~~~L~~ 116 (437)
-.+|++|++++.. + ..-|..++ .||+|+.|.+++=.+... ++-.-..++++|..||+|+.+. .+++.|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~----dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND----DFSQLCASFPNLRSLDISGTNISNLSGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch----hHHHHhhccCccceeecCCCCccCcHHHhcccc
Confidence 3567777777422 2 22333443 577788777776554421 2222345677778888887763 44555566
Q ss_pred hHhc--ccc-cccCC--chhhcCCCCCeEEeeCCcCC
Q 047084 117 LRQL--RNL-LKTIP--PPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 117 L~~l--~n~-~~~ip--~~~~~l~~L~~L~l~~N~l~ 148 (437)
|+.| +|+ +..-. ..+++|++|+.||+|.....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 6655 222 12111 35789999999999998877
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.83 E-value=0.0014 Score=59.33 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=86.1
Q ss_pred EEEecCCCCCc-----CCccccCCCCCcEEEeecccCc----ccCh-------hhhcccCCCEEEccCCccc-ccchh--
Q 047084 2 VLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTKVK----IIPK-------SIGNLLGLETLDLKNTLVR-ELPVE-- 62 (437)
Q Consensus 2 ~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~----~lp~-------~~~~l~~L~~L~l~~~~~~-~lp~~-- 62 (437)
.+|||+|-|++ +...+.+-.+|+..+++.-..+ ++++ ++-.+++|+..+||.|.++ ..|+.
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 47888888742 3334556677777777764332 3443 3446778888888866555 34443
Q ss_pred --hcCCcCCcEEeceeeccccccccccccc---------cccCCccCcEEEeecCChHhH------------hhccchHh
Q 047084 63 --IRNLKRLRYLMVYQYNYTAGFAAAKLHE---------GFGSLTNLQKLCIIEADSEAL------------KELMKLRQ 119 (437)
Q Consensus 63 --~~~L~~L~~L~l~~n~l~~~~~~~~lp~---------~~~~l~~L~~L~l~~n~~~~~------------~~L~~L~~ 119 (437)
+.+-+.|.+|.|++|.+- .+....+.. ....-+.|++.....|++... .+|+.++.
T Consensus 114 d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred HHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEe
Confidence 566777888888877664 111112221 123446788888888763221 13333333
Q ss_pred cccccccCCc--------hhhcCCCCCeEEeeCCcCC
Q 047084 120 LRNLLKTIPP--------PLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 120 l~n~~~~ip~--------~~~~l~~L~~L~l~~N~l~ 148 (437)
..|-+. |. .++.+.+|+.|+|++|-++
T Consensus 193 ~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 193 QQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eecCcC--cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 334332 32 3567889999999999998
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.83 E-value=0.0021 Score=58.36 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=65.5
Q ss_pred ccCCCCCcEEEeecccCc-c----cChhhhcccCCCEEEccCCcccc----cchh-------hcCCcCCcEEeceeeccc
Q 047084 17 VGNLFNLHYLSVKNTKVK-I----IPKSIGNLLGLETLDLKNTLVRE----LPVE-------IRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~-~----lp~~~~~l~~L~~L~l~~~~~~~----lp~~-------~~~L~~L~~L~l~~n~l~ 80 (437)
+.-+..+..++||+|.|+ + +...+.+-.+|+..+++.-+++. +|.. +.++++|+..+||.|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344788999999999996 2 33456667788888888555543 3433 567899999999999997
Q ss_pred cccccccccccccCCccCcEEEeecCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
...+ +.+-+-+.+-+.|.+|.+++|.
T Consensus 106 ~~~~-e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFP-EELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccc-hHHHHHHhcCCCceeEEeecCC
Confidence 5441 1222335677899999999997
No 62
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.67 E-value=4.3e-05 Score=67.43 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=81.4
Q ss_pred CCCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccc
Q 047084 9 PVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAK 87 (437)
Q Consensus 9 ~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~ 87 (437)
.+.++|- ++......+.||++.|++..+-..++-++.|..|+++.|.+..+|.+++++..++.+++..|..+ .
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~------~ 102 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS------Q 102 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh------h
Confidence 3456653 56777889999999999888878888899999999999999999999999999999999999887 7
Q ss_pred ccccccCCccCcEEEeecCC
Q 047084 88 LHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 88 lp~~~~~l~~L~~L~l~~n~ 107 (437)
.|.+++.+++++++++..|.
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CCccccccCCcchhhhccCc
Confidence 79999999999999999887
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.00019 Score=65.79 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=85.9
Q ss_pred CEEEecCCCCC--cCCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEcc-CCcccccch--hhcCCcCCcEEec
Q 047084 1 KVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLK-NTLVRELPV--EIRNLKRLRYLMV 74 (437)
Q Consensus 1 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~-~~~~~~lp~--~~~~L~~L~~L~l 74 (437)
++||||...|+ .+..-+..+.+|+.|.|.+++++ .+-..+..-..|+.|+++ .+.++.-.- -+.+++.|..|++
T Consensus 188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL 267 (419)
T ss_pred HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence 35677776653 33333567778888888888874 555667777888888888 666665433 3678888888888
Q ss_pred eeeccccccccccccccccCC-ccCcEEEeecCC-------hHh----HhhccchHhccc-cc-ccCCchhhcCCCCCeE
Q 047084 75 YQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEAD-------SEA----LKELMKLRQLRN-LL-KTIPPPLAADRSTKKA 140 (437)
Q Consensus 75 ~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~-------~~~----~~~L~~L~~l~n-~~-~~ip~~~~~l~~L~~L 140 (437)
+.+.++... +-..+... .+|..|++++.. .+. .+++.+|+..++ .+ ...-..|..++.|++|
T Consensus 268 sWc~l~~~~----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 268 SWCFLFTEK----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hHhhccchh----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 888776321 11112222 356667776654 111 134445544422 12 1222346677788888
Q ss_pred EeeCCcC
Q 047084 141 RFRSHEV 147 (437)
Q Consensus 141 ~l~~N~l 147 (437)
.++.+..
T Consensus 344 SlsRCY~ 350 (419)
T KOG2120|consen 344 SLSRCYD 350 (419)
T ss_pred ehhhhcC
Confidence 8877764
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00091 Score=61.36 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=18.6
Q ss_pred ccCCCEEEccCCcccccchh---hcCCcCCcEEeceeeccc
Q 047084 43 LLGLETLDLKNTLVRELPVE---IRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 43 l~~L~~L~l~~~~~~~lp~~---~~~L~~L~~L~l~~n~l~ 80 (437)
.+.+++|||.+|.++...+- +.+||.|+.|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 34455555555554443331 345555555555555554
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.52 E-value=6.8e-05 Score=66.18 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=57.5
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
+||++.|++..+-..|+.++.|..|+++.|++..+|..++.+..+.++++.+|..+..|.+++.+++++++++-.|.+.
T Consensus 46 vld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 46 VLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred eehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 5677777776666666667777777777777777777777777777777777777777777777777777777776655
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00034 Score=63.49 Aligned_cols=82 Identities=22% Similarity=0.186 Sum_probs=63.4
Q ss_pred CCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084 20 LFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ 99 (437)
Q Consensus 20 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~ 99 (437)
|.+.+.|+.-++.|..| +-...|+.|++|.|+-|.|+.+.+ +..+++|++|+|..|.|.... +| .-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sld---EL-~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLD---EL-EYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHH---HH-HHHhcCchhh
Confidence 56677888888888765 334579999999999888887754 678899999999999887432 12 2367889999
Q ss_pred EEEeecCC
Q 047084 100 KLCIIEAD 107 (437)
Q Consensus 100 ~L~l~~n~ 107 (437)
.|.|..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 99998885
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0022 Score=57.93 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=44.1
Q ss_pred cCCCCCcEEEeecccCcccChhhhcccCCCEEEccCC--c-ccccchhhcCCcCCcEEeceeeccccccccccccccccC
Q 047084 18 GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNT--L-VRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGS 94 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~--~-~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~ 94 (437)
-.+..|+.|.+.+..++.+ ..+-.|++|+.|.++.| . .+.++.-...+++|++|+++.|+++-. +.++ .+..
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l---stl~-pl~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL---STLR-PLKE 114 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---cccc-hhhh
Confidence 3344555555555544332 23345666777777744 1 223444344557777777777776621 1222 1344
Q ss_pred CccCcEEEeecCC
Q 047084 95 LTNLQKLCIIEAD 107 (437)
Q Consensus 95 l~~L~~L~l~~n~ 107 (437)
+.+|..|++.+|.
T Consensus 115 l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 115 LENLKSLDLFNCS 127 (260)
T ss_pred hcchhhhhcccCC
Confidence 5556666666654
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0013 Score=59.23 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=53.6
Q ss_pred CCCCCcCCccccCCCCCcEEEeecc--cC-cccChhhhcccCCCEEEccCCcccccch--hhcCCcCCcEEeceeeccc
Q 047084 7 DAPVDYLPEGVGNLFNLHYLSVKNT--KV-KIIPKSIGNLLGLETLDLKNTLVRELPV--EIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 7 ~n~l~~lp~~~~~l~~L~~L~L~~n--~l-~~lp~~~~~l~~L~~L~l~~~~~~~lp~--~~~~L~~L~~L~l~~n~l~ 80 (437)
+..++.+ ..+..|++|+.|.+|.| ++ ..++.-.-.+++|++|+++.|.+..+.. .+..+++|..|++++|..+
T Consensus 52 n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 52 NVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred ccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3334333 35667889999999999 55 3555555566999999999998876432 2677888999999988766
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.17 E-value=0.0017 Score=35.32 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=9.6
Q ss_pred CcEEEeecccCcccChhhh
Q 047084 23 LHYLSVKNTKVKIIPKSIG 41 (437)
Q Consensus 23 L~~L~L~~n~l~~lp~~~~ 41 (437)
|++|||++|+|+.+|+.|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 70
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.0012 Score=60.71 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=67.0
Q ss_pred CcEEEeecccCc--ccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084 23 LHYLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ 99 (437)
Q Consensus 23 L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~ 99 (437)
|++||||+..|+ .+..-+..+.+|+.|.+.++.+. .+-..+..-.+|+.|+++... |.. ...+.--+.+++.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t-~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFT-ENALQLLLSSCSRLD 263 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccc-hhHHHHHHHhhhhHh
Confidence 677777776663 44444566677777777755544 344456666777777776543 211 001222346677777
Q ss_pred EEEeecCCh---------HhH-hhccchHhc---cccccc-CCchhhcCCCCCeEEeeCCcCC
Q 047084 100 KLCIIEADS---------EAL-KELMKLRQL---RNLLKT-IPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 100 ~L~l~~n~~---------~~~-~~L~~L~~l---~n~~~~-ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.|+++.+.. ..+ ..|++|... +|+... +..-..++++|..||||+|..-
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 777776641 011 344444443 233322 2222246777888888776543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0067 Score=32.88 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=6.6
Q ss_pred CcEEeceeeccc
Q 047084 69 LRYLMVYQYNYT 80 (437)
Q Consensus 69 L~~L~l~~n~l~ 80 (437)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.23 E-value=0.032 Score=45.40 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=47.8
Q ss_pred CCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc
Q 047084 13 LPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH 89 (437)
Q Consensus 13 lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp 89 (437)
|++ .|.++.+|+.+.+.. .+..++. .|.++++|+.+.+.++ +..++.. |.++++|+.+.+.. .+. .++
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~------~i~ 73 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK------SIG 73 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-------EE-
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc------ccc
Confidence 444 467777888888875 5666664 4667778998888765 6677664 77887888888864 333 233
Q ss_pred c-cccCCccCcEEEeec
Q 047084 90 E-GFGSLTNLQKLCIIE 105 (437)
Q Consensus 90 ~-~~~~l~~L~~L~l~~ 105 (437)
. .|..+++|+.+.+..
T Consensus 74 ~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTTTT-TTECEEEETT
T ss_pred cccccccccccccccCc
Confidence 3 366688888887754
No 73
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=94.67 E-value=0.26 Score=45.09 Aligned_cols=161 Identities=17% Similarity=0.259 Sum_probs=100.7
Q ss_pred cCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHh-HHcCceEEcCceEEEeecCCCCCCCcccccce
Q 047084 220 LGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYA-LTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSA 298 (437)
Q Consensus 220 ~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~v-l~~~pw~~~~~~l~l~~w~~~~~~~~~~~~~~ 298 (437)
..-++..+.-...+...|...+++...|+-.|+=-+..+....-... ..-.-+.+++-.+.++.-+....++
T Consensus 6 FIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~s------- 78 (346)
T KOG0109|consen 6 FIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKAS------- 78 (346)
T ss_pred hccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCc-------
Confidence 33344555556677788999999999999999855555554444433 3356677777777777555442222
Q ss_pred eEEEEecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEEEeeCCCCceeEE------EEeCeE--EEEEE
Q 047084 299 IVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRF------NIDGKI--QKVEY 370 (437)
Q Consensus 299 p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V~id~~kpl~~~i------~~~g~~--~~v~Y 370 (437)
.-+.+.|+.....+.+. .+.-..-|.+++-|.... | ..|.+|...-....| .+.|+. +++.-
T Consensus 79 -tkl~vgNis~tctn~El-Ra~fe~ygpviecdivkd------y--~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 79 -TKLHVGNISPTCTNQEL-RAKFEKYGPVIECDIVKD------Y--AFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred -cccccCCCCccccCHHH-hhhhcccCCceeeeeecc------e--eEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 23345677777766664 444567788888777533 3 234555444333222 345654 34444
Q ss_pred ccC--------cccccccccccccCCCCCCccccc
Q 047084 371 EGL--------PIICYQCGKYGHNSIVCQSKQKMN 397 (437)
Q Consensus 371 E~l--------p~~C~~cg~~gH~~~~C~~~~~~~ 397 (437)
.++ +--|+.||+-||-.++||......
T Consensus 149 srlrtapgmgDq~~cyrcGkeghwskEcP~~~~~r 183 (346)
T KOG0109|consen 149 SRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGR 183 (346)
T ss_pred cccccCCCCCCHHHheeccccccccccCCccCCCc
Confidence 443 357999999999999999965443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.45 E-value=0.084 Score=42.91 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=54.7
Q ss_pred EEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
.+.+.. .+..++. .|.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.+ .+..++.. |..+++|+.+++..+
T Consensus 16 ~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~- 91 (129)
T PF13306_consen 16 SITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN- 91 (129)
T ss_dssp EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT-
T ss_pred EEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-
Confidence 345543 4667755 5788889999999885 777764 566787999999976 55556654 778999999999765
Q ss_pred cccccccccccc-cccCCccCcEEEeec
Q 047084 79 YTAGFAAAKLHE-GFGSLTNLQKLCIIE 105 (437)
Q Consensus 79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~ 105 (437)
++ .++. .|.+. +|+.+.+..
T Consensus 92 ~~------~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 92 IT------EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -B------EEHTTTTTT--T--EEE-TT
T ss_pred cc------EEchhhhcCC-CceEEEECC
Confidence 44 3343 36666 888887654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.43 E-value=0.024 Score=28.54 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=6.8
Q ss_pred CCcEEEeecccCcccC
Q 047084 22 NLHYLSVKNTKVKIIP 37 (437)
Q Consensus 22 ~L~~L~L~~n~l~~lp 37 (437)
+|+.|+|++|++.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555443
No 76
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=93.83 E-value=0.028 Score=33.23 Aligned_cols=19 Identities=32% Similarity=0.819 Sum_probs=17.6
Q ss_pred ccccccccccccCCCCCCc
Q 047084 375 IICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~ 393 (437)
..|..|+.-||..+.||..
T Consensus 9 Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 9 YVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CEeecCCCCCccHhHCCCC
Confidence 6899999999999999983
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.80 E-value=0.052 Score=30.62 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=12.8
Q ss_pred CCCCcEEEeecccCcccChhh
Q 047084 20 LFNLHYLSVKNTKVKIIPKSI 40 (437)
Q Consensus 20 l~~L~~L~L~~n~l~~lp~~~ 40 (437)
|++|++|+|++|+|..+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.80 E-value=0.052 Score=30.62 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=12.8
Q ss_pred CCCCcEEEeecccCcccChhh
Q 047084 20 LFNLHYLSVKNTKVKIIPKSI 40 (437)
Q Consensus 20 l~~L~~L~L~~n~l~~lp~~~ 40 (437)
|++|++|+|++|+|..+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666543
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.08 E-value=0.058 Score=27.12 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=9.3
Q ss_pred CCCCeEEeeCCcCCCCCC
Q 047084 135 RSTKKARFRSHEVDADSP 152 (437)
Q Consensus 135 ~~L~~L~l~~N~l~~~~p 152 (437)
++|+.|++++|+|+ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 46788888888876 443
No 80
>smart00343 ZnF_C2HC zinc finger.
Probab=92.20 E-value=0.061 Score=30.42 Aligned_cols=18 Identities=44% Similarity=0.977 Sum_probs=15.9
Q ss_pred cccccccccccCCCCCCc
Q 047084 376 ICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 376 ~C~~cg~~gH~~~~C~~~ 393 (437)
.|+.||..||....|+..
T Consensus 1 ~C~~CG~~GH~~~~C~~~ 18 (26)
T smart00343 1 KCYNCGKEGHIARDCPKX 18 (26)
T ss_pred CCccCCCCCcchhhCCcc
Confidence 599999999999999843
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.00 E-value=0.27 Score=27.60 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=9.5
Q ss_pred cCCCEEEccCCcccccchh
Q 047084 44 LGLETLDLKNTLVRELPVE 62 (437)
Q Consensus 44 ~~L~~L~l~~~~~~~lp~~ 62 (437)
++|++|+|++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.00 E-value=0.27 Score=27.60 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=9.5
Q ss_pred cCCCEEEccCCcccccchh
Q 047084 44 LGLETLDLKNTLVRELPVE 62 (437)
Q Consensus 44 ~~L~~L~l~~~~~~~lp~~ 62 (437)
++|++|+|++|.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 83
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=89.39 E-value=0.19 Score=31.43 Aligned_cols=20 Identities=30% Similarity=0.757 Sum_probs=17.1
Q ss_pred ccccccccccccC--CCCCCcc
Q 047084 375 IICYQCGKYGHNS--IVCQSKQ 394 (437)
Q Consensus 375 ~~C~~cg~~gH~~--~~C~~~~ 394 (437)
..|..||-+||.. +.||...
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~ 23 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYC 23 (40)
T ss_pred ccccccccccccccCccCCCCC
Confidence 4699999999987 7898865
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.34 E-value=0.75 Score=25.90 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=10.3
Q ss_pred CCcEEEeecccCcccCh
Q 047084 22 NLHYLSVKNTKVKIIPK 38 (437)
Q Consensus 22 ~L~~L~L~~n~l~~lp~ 38 (437)
+|+.|++++|++..+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666554
No 85
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=80.17 E-value=0.91 Score=39.22 Aligned_cols=17 Identities=47% Similarity=1.017 Sum_probs=14.5
Q ss_pred ccccccccccccCCCCC
Q 047084 375 IICYQCGKYGHNSIVCQ 391 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~ 391 (437)
..|+.||..||....|+
T Consensus 98 ~~C~~Cg~~GH~~~dC~ 114 (190)
T COG5082 98 KKCYNCGETGHLSRDCN 114 (190)
T ss_pred cccccccccCccccccC
Confidence 68889999999999993
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.95 E-value=1.3 Score=25.06 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=10.0
Q ss_pred CCCCcEEEeecccCcc
Q 047084 20 LFNLHYLSVKNTKVKI 35 (437)
Q Consensus 20 l~~L~~L~L~~n~l~~ 35 (437)
+.+|+.|+|+.|+|..
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3456677777776643
No 87
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=78.76 E-value=1.1 Score=28.57 Aligned_cols=19 Identities=32% Similarity=0.854 Sum_probs=17.4
Q ss_pred cccccccccccccCCCCCC
Q 047084 374 PIICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~ 392 (437)
...|..|+..||..-+|+.
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 4689999999999999996
No 88
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.28 E-value=1.3 Score=40.65 Aligned_cols=26 Identities=35% Similarity=0.746 Sum_probs=22.7
Q ss_pred ccccccccccccCCCCCCcccccccC
Q 047084 375 IICYQCGKYGHNSIVCQSKQKMNEAN 400 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~~~~~~~ 400 (437)
..|+.||--||..++||.-+..+.++
T Consensus 177 Y~CyRCGqkgHwIqnCpTN~Dpnfdg 202 (427)
T COG5222 177 YVCYRCGQKGHWIQNCPTNQDPNFDG 202 (427)
T ss_pred eeEEecCCCCchhhcCCCCCCCCccc
Confidence 68999999999999999977766654
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.98 E-value=0.082 Score=53.44 Aligned_cols=84 Identities=21% Similarity=0.152 Sum_probs=41.7
Q ss_pred CcEEEeecccCcc-----cChhhhcccCCCEEEccCCccccc-----chhhcCC-cCCcEEeceeecccccccccccccc
Q 047084 23 LHYLSVKNTKVKI-----IPKSIGNLLGLETLDLKNTLVREL-----PVEIRNL-KRLRYLMVYQYNYTAGFAAAKLHEG 91 (437)
Q Consensus 23 L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~~~~~~l-----p~~~~~L-~~L~~L~l~~n~l~~~~~~~~lp~~ 91 (437)
+..|.|.+|.+.. +-..+..+..|+.|+++.|.++.- -..+... ..|++|++..+.+++.. ...+.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g-~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG-AAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc-hHHHHHH
Confidence 5556666666531 223344455666666665544411 1112222 44555666666665432 1233444
Q ss_pred ccCCccCcEEEeecCC
Q 047084 92 FGSLTNLQKLCIIEAD 107 (437)
Q Consensus 92 ~~~l~~L~~L~l~~n~ 107 (437)
+.....++.++++.|.
T Consensus 168 L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNG 183 (478)
T ss_pred HhcccchhHHHHHhcc
Confidence 5445566666666665
No 90
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=76.20 E-value=1.2 Score=38.57 Aligned_cols=20 Identities=30% Similarity=0.781 Sum_probs=18.0
Q ss_pred cCcccccccccccccCCCCC
Q 047084 372 GLPIICYQCGKYGHNSIVCQ 391 (437)
Q Consensus 372 ~lp~~C~~cg~~gH~~~~C~ 391 (437)
.--.+|+.||..||..+.||
T Consensus 58 ~~~~~C~nCg~~GH~~~DCP 77 (190)
T COG5082 58 EENPVCFNCGQNGHLRRDCP 77 (190)
T ss_pred ccccccchhcccCcccccCC
Confidence 34589999999999999999
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.04 E-value=0.048 Score=55.12 Aligned_cols=145 Identities=20% Similarity=0.184 Sum_probs=79.0
Q ss_pred EEecCCCCCcCC-----ccccCC-CCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccc-----cchhh---
Q 047084 3 LDLEDAPVDYLP-----EGVGNL-FNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEI--- 63 (437)
Q Consensus 3 L~L~~n~l~~lp-----~~~~~l-~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~--- 63 (437)
|++++|.++..- ..+... ..|++|++..|.++ .+...+.....++.++++.|.+.. ++..+
T Consensus 120 L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~ 199 (478)
T KOG4308|consen 120 LDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESA 199 (478)
T ss_pred hhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhh
Confidence 677777776221 112222 45677888777763 344556667778888888665532 22223
Q ss_pred -cCCcCCcEEeceeeccccccccccccccccCCcc-CcEEEeecCChHhH---------hhc----cchHhccccc----
Q 047084 64 -RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTN-LQKLCIIEADSEAL---------KEL----MKLRQLRNLL---- 124 (437)
Q Consensus 64 -~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~-L~~L~l~~n~~~~~---------~~L----~~L~~l~n~~---- 124 (437)
....++++|+++++.++... ...+-..+...++ +..|++..|..... ..+ ..+....|.+
T Consensus 200 ~~~~~~le~L~L~~~~~t~~~-c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~ 278 (478)
T KOG4308|consen 200 ASPLSSLETLKLSRCGVTSSS-CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG 278 (478)
T ss_pred hcccccHHHHhhhhcCcChHH-HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc
Confidence 34778888888888877321 1122233455555 66788888863211 111 1122222222
Q ss_pred -ccCCchhhcCCCCCeEEeeCCcCC
Q 047084 125 -KTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 125 -~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
..+...+..+..++.+.++.|.+.
T Consensus 279 ~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 279 VRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHhhhHHHHHhhcccCccc
Confidence 222334455566777777777766
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.58 E-value=1.7 Score=23.74 Aligned_cols=15 Identities=0% Similarity=0.155 Sum_probs=9.9
Q ss_pred CCCCeEEeeCCcCCC
Q 047084 135 RSTKKARFRSHEVDA 149 (437)
Q Consensus 135 ~~L~~L~l~~N~l~~ 149 (437)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 578888888888763
No 93
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=70.24 E-value=2.4 Score=35.62 Aligned_cols=21 Identities=43% Similarity=0.816 Sum_probs=16.8
Q ss_pred CcccccccccccccCCCCCCc
Q 047084 373 LPIICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~~ 393 (437)
-+.+|+.||..||..++||.+
T Consensus 128 ~~~~C~~Cg~~gH~~~dCp~~ 148 (148)
T PTZ00368 128 GDKTCYNCGQTGHLSRDCPDK 148 (148)
T ss_pred CCCccccCCCcCcccccCCCC
Confidence 356888888888888888863
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.81 E-value=5.4 Score=22.77 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=11.4
Q ss_pred CCCCeEEeeCCcCC
Q 047084 135 RSTKKARFRSHEVD 148 (437)
Q Consensus 135 ~~L~~L~l~~N~l~ 148 (437)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888886
No 95
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=62.26 E-value=3.9 Score=40.49 Aligned_cols=30 Identities=33% Similarity=0.752 Sum_probs=22.8
Q ss_pred cccccccccccCCCCCCc-ccccccCCCccc
Q 047084 376 ICYQCGKYGHNSIVCQSK-QKMNEANNGYSE 405 (437)
Q Consensus 376 ~C~~cg~~gH~~~~C~~~-~~~~~~~~~~~~ 405 (437)
.|+.||-+||....|+.. +++..+..++++
T Consensus 287 ~c~~cg~~gH~~~dc~~~~q~~~~~~~~~d~ 317 (554)
T KOG0119|consen 287 VCKICGPLGHISIDCKVNDQQMPMSSANFDR 317 (554)
T ss_pred cccccCCcccccccCCCcccccchhhhccCH
Confidence 899999999999999997 444444444443
No 96
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.70 E-value=3.6 Score=38.17 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=15.5
Q ss_pred EEccCcccccccccccccCCCCCC
Q 047084 369 EYEGLPIICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 369 ~YE~lp~~C~~cg~~gH~~~~C~~ 392 (437)
.+.+- .+||.||..||....|+.
T Consensus 139 ~~~~~-~~Cy~Cg~~GH~s~~C~~ 161 (261)
T KOG4400|consen 139 DGPKP-AKCYSCGEQGHISDDCPE 161 (261)
T ss_pred cCCCC-CccCCCCcCCcchhhCCC
Confidence 34444 667777777777777774
No 97
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=60.14 E-value=6.1 Score=24.07 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=13.8
Q ss_pred cccccccccccccCCCCCCcccc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
|-.|+.||+=.|-..+|......
T Consensus 2 ~~~CprC~kg~Hwa~~C~sk~d~ 24 (36)
T PF14787_consen 2 PGLCPRCGKGFHWASECRSKTDV 24 (36)
T ss_dssp --C-TTTSSSCS-TTT---TCCC
T ss_pred CccCcccCCCcchhhhhhhhhcc
Confidence 45799999999999999886544
No 98
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.62 E-value=6.4 Score=34.70 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=6.3
Q ss_pred ccCcEEEeecCC
Q 047084 96 TNLQKLCIIEAD 107 (437)
Q Consensus 96 ~~L~~L~l~~n~ 107 (437)
++|+.|++++|.
T Consensus 151 ~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 151 PSLQDLDLSGCP 162 (221)
T ss_pred cchheeeccCCC
Confidence 355555555553
No 99
>COG1644 RPB10 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription]
Probab=54.33 E-value=5.3 Score=27.53 Aligned_cols=14 Identities=50% Similarity=1.462 Sum_probs=11.0
Q ss_pred Ccccccccccc-ccc
Q 047084 373 LPIICYQCGKY-GHN 386 (437)
Q Consensus 373 lp~~C~~cg~~-gH~ 386 (437)
.|..||.||+. ||.
T Consensus 3 iPiRCFsCGkvi~~~ 17 (63)
T COG1644 3 IPVRCFSCGKVIGHK 17 (63)
T ss_pred CceEeecCCCCHHHH
Confidence 58899999974 664
No 100
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=54.14 E-value=5.6 Score=28.35 Aligned_cols=14 Identities=43% Similarity=1.343 Sum_probs=10.9
Q ss_pred Ccccccccccc-ccc
Q 047084 373 LPIICYQCGKY-GHN 386 (437)
Q Consensus 373 lp~~C~~cg~~-gH~ 386 (437)
.|..||.||++ ||.
T Consensus 3 iPVRCFTCGkvig~~ 17 (71)
T PLN00032 3 IPVRCFTCGKVIGNK 17 (71)
T ss_pred CceeecCCCCCcHHH
Confidence 58899999985 443
No 101
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=53.75 E-value=5.8 Score=27.55 Aligned_cols=13 Identities=38% Similarity=1.249 Sum_probs=10.4
Q ss_pred Ccccccccccc-cc
Q 047084 373 LPIICYQCGKY-GH 385 (437)
Q Consensus 373 lp~~C~~cg~~-gH 385 (437)
.|..||.||++ ||
T Consensus 3 iPvRCFTCGkvi~~ 16 (62)
T PRK04016 3 IPVRCFTCGKVIAE 16 (62)
T ss_pred CCeEecCCCCChHH
Confidence 58899999985 44
No 102
>PF01194 RNA_pol_N: RNA polymerases N / 8 kDa subunit; InterPro: IPR000268 In eukaryotes, there are three different forms of DNA-dependent RNA polymerases (2.7.7.6 from EC) transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. Archaebacterial subunit N (gene rpoN) [] is a small protein of about 8 kDa, it is evolutionary related [] to a 8.3 kDa component shared by all three forms of eukaryotic RNA polymerases (gene RPB10 in yeast and POLR2J in mammals) as well as to African swine fever virus (ASFV) protein CP80R []. There is a conserved region which is located at the N-terminal extremity of these polymerase subunits; this region contains two cysteines that binds a zinc ion [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_N 3HKZ_N 1EF4_A 3H0G_V 2Y0S_N 2R92_J 3M4O_J 3S2D_J 1R9S_J 1Y1W_J ....
Probab=52.33 E-value=6.6 Score=27.14 Aligned_cols=14 Identities=43% Similarity=1.343 Sum_probs=9.2
Q ss_pred Ccccccccccc-ccc
Q 047084 373 LPIICYQCGKY-GHN 386 (437)
Q Consensus 373 lp~~C~~cg~~-gH~ 386 (437)
.|..||.||++ ||.
T Consensus 3 iPVRCFTCGkvi~~~ 17 (60)
T PF01194_consen 3 IPVRCFTCGKVIGNK 17 (60)
T ss_dssp -SSS-STTTSBTCGH
T ss_pred CceecCCCCCChhHh
Confidence 58899999985 443
No 103
>KOG3497 consensus DNA-directed RNA polymerase, subunit RPB10 [Transcription]
Probab=50.05 E-value=5.8 Score=27.06 Aligned_cols=11 Identities=55% Similarity=1.476 Sum_probs=9.5
Q ss_pred Ccccccccccc
Q 047084 373 LPIICYQCGKY 383 (437)
Q Consensus 373 lp~~C~~cg~~ 383 (437)
.|..||.||++
T Consensus 3 iPiRCFtCGKv 13 (69)
T KOG3497|consen 3 IPIRCFTCGKV 13 (69)
T ss_pred eeeEeeecccc
Confidence 58899999986
No 104
>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]
Probab=49.29 E-value=7.1 Score=38.33 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.3
Q ss_pred ccccccccccccCCCCCCcccccccC
Q 047084 375 IICYQCGKYGHNSIVCQSKQKMNEAN 400 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~~~~~~~ 400 (437)
-+|-.||.+||..+.|..+.++-...
T Consensus 113 GACeNCGAmtHk~KDCmERPRK~gAk 138 (529)
T KOG2560|consen 113 GACENCGAMTHKVKDCMERPRKVGAK 138 (529)
T ss_pred hhhhhhhhhhcchHHHhhcchhhccc
Confidence 68999999999999999977765554
No 105
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=49.19 E-value=8.5 Score=32.21 Aligned_cols=17 Identities=47% Similarity=1.237 Sum_probs=8.7
Q ss_pred cccccccccccCCCCCC
Q 047084 376 ICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 376 ~C~~cg~~gH~~~~C~~ 392 (437)
.|+.|+..||....||.
T Consensus 2 ~C~~C~~~GH~~~~c~~ 18 (148)
T PTZ00368 2 VCYRCGGVGHQSRECPN 18 (148)
T ss_pred cCCCCCCCCcCcccCcC
Confidence 35555555555555544
No 106
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=46.09 E-value=12 Score=39.40 Aligned_cols=27 Identities=30% Similarity=0.783 Sum_probs=23.0
Q ss_pred EEccCcccccccccccccCCCCCCccc
Q 047084 369 EYEGLPIICYQCGKYGHNSIVCQSKQK 395 (437)
Q Consensus 369 ~YE~lp~~C~~cg~~gH~~~~C~~~~~ 395 (437)
.+.+-|.-|+.||..||..+.|.-..+
T Consensus 255 ~~P~~~~~C~~cgq~gh~~~dc~g~~~ 281 (931)
T KOG2044|consen 255 FFPNKPRRCFLCGQTGHEAKDCEGKPR 281 (931)
T ss_pred ecCCCcccchhhcccCCcHhhcCCcCC
Confidence 346678889999999999999998755
No 107
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=45.63 E-value=8.9 Score=37.10 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.5
Q ss_pred ccccccccccccCCCCCCccc
Q 047084 375 IICYQCGKYGHNSIVCQSKQK 395 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~~ 395 (437)
.-|.+||=+||....||+.+-
T Consensus 571 kGCayCgGLGHRItdCPKle~ 591 (610)
T KOG0341|consen 571 KGCAYCGGLGHRITDCPKLEA 591 (610)
T ss_pred cccccccCCCcccccCchhhh
Confidence 579999999999999999543
No 108
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.09 E-value=12 Score=37.97 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=29.5
Q ss_pred ccCCCEEEccCCcccccchh---hcCCcCCcEEeceee--ccccccccccccccccCCccCcEEEeecCC
Q 047084 43 LLGLETLDLKNTLVRELPVE---IRNLKRLRYLMVYQY--NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 43 l~~L~~L~l~~~~~~~lp~~---~~~L~~L~~L~l~~n--~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
.+.+..+.|++|++..+..- -...|+|..|+|++| .+.... +++. +++ ..|++|-+.+|.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~---el~K-~k~-l~Leel~l~GNP 281 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES---ELDK-LKG-LPLEELVLEGNP 281 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh---hhhh-hcC-CCHHHeeecCCc
Confidence 44555555666655544321 234566667777766 333211 1111 122 246666666665
No 109
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.59 E-value=11 Score=31.55 Aligned_cols=32 Identities=31% Similarity=0.676 Sum_probs=22.9
Q ss_pred CCCCceeEEEEeCeE-EEEEEccCcccccccccc
Q 047084 351 LSQPLLSRFNIDGKI-QKVEYEGLPIICYQCGKY 383 (437)
Q Consensus 351 ~~kpl~~~i~~~g~~-~~v~YE~lp~~C~~cg~~ 383 (437)
.+.|.+....++|.. +...|+ .|.+|..||+.
T Consensus 45 C~~~IrG~y~v~gv~~~g~~~~-~PsYC~~CGkp 77 (158)
T PF10083_consen 45 CSTPIRGDYHVEGVFGLGGHYE-APSYCHNCGKP 77 (158)
T ss_pred CCCCCCCceecCCeeeeCCCCC-CChhHHhCCCC
Confidence 345666666777653 347788 89999999975
No 110
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.25 E-value=14 Score=37.67 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=8.1
Q ss_pred CCcCCcEEeceeeccc
Q 047084 65 NLKRLRYLMVYQYNYT 80 (437)
Q Consensus 65 ~L~~L~~L~l~~n~l~ 80 (437)
+.+.+..++|++|++.
T Consensus 216 n~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY 231 (585)
T ss_pred CCcceeeeecccchhh
Confidence 3344555555555554
No 111
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=39.24 E-value=13 Score=37.32 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=6.4
Q ss_pred CCccCcEEEeecC
Q 047084 94 SLTNLQKLCIIEA 106 (437)
Q Consensus 94 ~l~~L~~L~l~~n 106 (437)
.+++|++|+++.+
T Consensus 293 ~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 293 RCPSLRELDLSGC 305 (482)
T ss_pred hcCcccEEeeecC
Confidence 3444555555544
No 112
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.92 E-value=7.6 Score=34.27 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=47.0
Q ss_pred CCCcEEEeecccCcccC-hhhhcccCCCEEEccCC-cccccch-hhc-CCcCCcEEeceeec-cccccccccccccccCC
Q 047084 21 FNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNT-LVRELPV-EIR-NLKRLRYLMVYQYN-YTAGFAAAKLHEGFGSL 95 (437)
Q Consensus 21 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~-~~~~lp~-~~~-~L~~L~~L~l~~n~-l~~~~~~~~lp~~~~~l 95 (437)
..++.+|.++..|-... ..+.++++++.|.+.+. .+...-- .++ -.++|+.|+++.|. ||... -..+..+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-----L~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-----LACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-----HHHHHHh
Confidence 44777888888774322 55667777777777643 2222111 122 45789999999664 44111 1235566
Q ss_pred ccCcEEEeec
Q 047084 96 TNLQKLCIIE 105 (437)
Q Consensus 96 ~~L~~L~l~~ 105 (437)
++|+.|.+++
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 6777776654
No 113
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.51 E-value=66 Score=30.10 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCCCcccccceeEEEEecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEEEeeCCCCce-eEEEEeCe
Q 047084 288 FDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLL-SRFNIDGK 364 (437)
Q Consensus 288 ~~~~~~~~~~~p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V~id~~kpl~-~~i~~~g~ 364 (437)
..+.+...+....||.++|.|..- .+++...-..+|++++.-.. .+.+|. ++|..-+++..|-|. ....|+|.
T Consensus 186 s~pte~~~d~~D~WVTVfGFppg~--~s~vL~~F~~cG~Vvkhv~~-~ngNwM-hirYssr~~A~KALskng~ii~g~ 259 (350)
T KOG4285|consen 186 SQPTEEEADAADTWVTVFGFPPGQ--VSIVLNLFSRCGEVVKHVTP-SNGNWM-HIRYSSRTHAQKALSKNGTIIDGD 259 (350)
T ss_pred ccccccccccccceEEEeccCccc--hhHHHHHHHhhCeeeeeecC-CCCceE-EEEecchhHHHHhhhhcCeeeccc
Confidence 345556666778999999999753 45566667899999997776 323332 444446777778774 34445554
No 114
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=35.18 E-value=48 Score=24.10 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=30.7
Q ss_pred ecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEE
Q 047084 304 LPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIA 346 (437)
Q Consensus 304 i~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~ 346 (437)
...||.-+-+.-+...+|..-|.++++.-.+......-+.|+.
T Consensus 31 ~~qLP~I~~~DPv~r~~g~k~GdVvkI~R~S~taG~~v~YR~V 73 (74)
T PF01191_consen 31 PEQLPKILSSDPVARYLGAKPGDVVKIIRKSETAGEYVTYRLV 73 (74)
T ss_dssp TTCSSEEETTSHHHHHTT--TTSEEEEEEEETTTSEEEEEEEE
T ss_pred hhhCCcccccChhhhhcCCCCCCEEEEEecCCCCCCcEEEEEe
Confidence 3468888888999999999999999999886543333445544
No 115
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.64 E-value=32 Score=42.01 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=27.1
Q ss_pred EecCCCCCcCCc-cccCCCCCcEEEeecccC
Q 047084 4 DLEDAPVDYLPE-GVGNLFNLHYLSVKNTKV 33 (437)
Q Consensus 4 ~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l 33 (437)
||++|+|..||. .|..|.+|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 689999999987 468899999999999987
No 116
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=29.36 E-value=34 Score=22.52 Aligned_cols=18 Identities=28% Similarity=0.539 Sum_probs=12.7
Q ss_pred eEEEEEE---ccCcccccccc
Q 047084 364 KIQKVEY---EGLPIICYQCG 381 (437)
Q Consensus 364 ~~~~v~Y---E~lp~~C~~cg 381 (437)
+.|+|+. .++-.||..||
T Consensus 6 ~yY~v~~~kv~rk~~~CPrCG 26 (51)
T COG1998 6 KYYEVDDEKVKRKNRFCPRCG 26 (51)
T ss_pred eEEEEcCCcEEEccccCCCCC
Confidence 3456666 44668999998
No 117
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=29.33 E-value=1.6e+02 Score=19.59 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=25.2
Q ss_pred eEEEEecCCccccccHHHHHHHhhccCcEEEEecc
Q 047084 299 IVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYH 333 (437)
Q Consensus 299 p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~ 333 (437)
+.||.+.|.|.... +.++..+.+ +|++.++...
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~-fGeI~~~~~~ 33 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFAS-FGEIVDIYVP 33 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHh-cCCEEEEEcC
Confidence 46999999997664 556666665 9999887766
No 118
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=30 Score=32.08 Aligned_cols=24 Identities=50% Similarity=0.841 Sum_probs=21.5
Q ss_pred CcccccccccccccCCCCCCcccc
Q 047084 373 LPIICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
.+..|+.|+.+||...+|+.....
T Consensus 163 ~~~~c~~c~~~~h~~~~C~~~~~~ 186 (261)
T KOG4400|consen 163 KGGTCFRCGKVGHGSRDCPSKQKS 186 (261)
T ss_pred CCCccccCCCcceecccCCccccc
Confidence 488999999999999999996655
No 119
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=26.40 E-value=45 Score=34.03 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=23.1
Q ss_pred CceeEEEEeCeEEEEEEccCcccccccccc
Q 047084 354 PLLSRFNIDGKIQKVEYEGLPIICYQCGKY 383 (437)
Q Consensus 354 pl~~~i~~~g~~~~v~YE~lp~~C~~cg~~ 383 (437)
+-...+.|..+.+.|+-=+-|-||.+||.+
T Consensus 136 at~ed~~i~PH~l~vhSY~~PtFCD~CGEm 165 (888)
T KOG4236|consen 136 ATFEDFQIRPHTLFVHSYKAPTFCDFCGEM 165 (888)
T ss_pred ccccceeeecceeeeecccCchHHHHHHHH
Confidence 445666777777888888889999999864
No 120
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=26.37 E-value=28 Score=33.57 Aligned_cols=21 Identities=33% Similarity=0.717 Sum_probs=16.9
Q ss_pred cccccccccccc--CCCCCCccc
Q 047084 375 IICYQCGKYGHN--SIVCQSKQK 395 (437)
Q Consensus 375 ~~C~~cg~~gH~--~~~C~~~~~ 395 (437)
..|..|+++||. +++||.-..
T Consensus 125 VrC~kChkwGH~n~DreCplf~~ 147 (453)
T KOG3794|consen 125 VRCLKCHKWGHINTDRECPLFGK 147 (453)
T ss_pred eeEEeecccccccCCccCcchhh
Confidence 469999999996 578998443
No 121
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=26.23 E-value=95 Score=24.01 Aligned_cols=48 Identities=27% Similarity=0.553 Sum_probs=31.0
Q ss_pred ccCCcEEEEEEEeeCCCCceeEEEEe-CeEEEEE----------EccCccccccccccc
Q 047084 337 RERGKFARIAVRISLSQPLLSRFNID-GKIQKVE----------YEGLPIICYQCGKYG 384 (437)
Q Consensus 337 ~~~~~~~rv~V~id~~kpl~~~i~~~-g~~~~v~----------YE~lp~~C~~cg~~g 384 (437)
...+.|.|+.|..+.......-..|+ |....+. +..+|..|..|..-|
T Consensus 63 ~~~~~w~Ra~I~~~~~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 63 SEDGRWYRAVITVDIDENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG 121 (121)
T ss_dssp TTTSEEEEEEEEEEECTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred ecCCceeeEEEEEecccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence 33468999999666666666666665 6654444 444677777776554
No 122
>PF05515 Viral_NABP: Viral nucleic acid binding ; InterPro: IPR008891 This family is common to ssRNA positive-strand viruses and are commonly described as nucleic acid binding proteins (NABP).
Probab=25.93 E-value=32 Score=27.60 Aligned_cols=19 Identities=37% Similarity=0.959 Sum_probs=16.6
Q ss_pred ccccccccccccCCCCCCc
Q 047084 375 IICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~ 393 (437)
..|+.||++-|....|+.-
T Consensus 63 ~~C~~CG~~l~~~~~C~~~ 81 (124)
T PF05515_consen 63 NRCFKCGRYLHNNGNCRRN 81 (124)
T ss_pred CccccccceeecCCcCCCc
Confidence 4799999999999999953
No 123
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=25.75 E-value=1.2e+02 Score=30.34 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=51.8
Q ss_pred EEEEeCChhhHHHhHHcCceEEcCceEEEeecCC-----CCCCCcccccceeEEEEecCCccccccHHHHHHHhh
Q 047084 253 FLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTP-----QFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQ 322 (437)
Q Consensus 253 f~~~f~~~~d~~~vl~~~pw~~~~~~l~l~~w~~-----~~~~~~~~~~~~p~Wvri~~Lp~~~~~~~~l~~i~~ 322 (437)
--+.|.+++|++..++..--++...++.+..-.+ .+.+....-.....-||+.+||+.+-.++|...++.
T Consensus 52 A~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaG 126 (510)
T KOG4211|consen 52 AYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAG 126 (510)
T ss_pred eEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcC
Confidence 3457899999999999988888888888876532 222222222234466999999999999999988776
No 124
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.33 E-value=44 Score=40.99 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=23.1
Q ss_pred EeecccCcccChh-hhcccCCCEEEccCCcc
Q 047084 27 SVKNTKVKIIPKS-IGNLLGLETLDLKNTLV 56 (437)
Q Consensus 27 ~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~ 56 (437)
||++|+|..||.. |..|.+|++|+|++|-.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 5788999888754 55688899999987643
No 125
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=23.26 E-value=39 Score=33.90 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=65.7
Q ss_pred cCCCCCcEEEeeccc-CcccC-hhhhc-ccCCCEEEccCCc-ccc--cchhhcCCcCCcEEeceeecccccccccccccc
Q 047084 18 GNLFNLHYLSVKNTK-VKIIP-KSIGN-LLGLETLDLKNTL-VRE--LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG 91 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~-l~~lp-~~~~~-l~~L~~L~l~~~~-~~~--lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~ 91 (437)
..+.+|+.|+++++. ++..- ..+.. +++|++|.+.+.. ++. +-.-...+++|++|+++.+...+.. .+...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~---~l~~~ 316 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS---GLEAL 316 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH---HHHHH
Confidence 556788888888877 44222 33333 7789998866443 322 1222457788999999977654221 22333
Q ss_pred ccCCccCcEEEeecCChHhHhhccchHhccccc---ccCC-chhhcCCCCCeEEeeCCcCC
Q 047084 92 FGSLTNLQKLCIIEADSEALKELMKLRQLRNLL---KTIP-PPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 92 ~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~---~~ip-~~~~~l~~L~~L~l~~N~l~ 148 (437)
..++++|+.|.+..... ...++.+....-.. ..+. ..+..++.++.+.+..+.++
T Consensus 317 ~~~c~~l~~l~~~~~~~--c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 317 LKNCPNLRELKLLSLNG--CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHhCcchhhhhhhhcCC--CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 34456666654433221 11111111110000 0111 23456777888877777733
No 126
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=23.01 E-value=29 Score=23.23 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=19.6
Q ss_pred ccccccccc-------cccCCCCCCcccccccC
Q 047084 375 IICYQCGKY-------GHNSIVCQSKQKMNEAN 400 (437)
Q Consensus 375 ~~C~~cg~~-------gH~~~~C~~~~~~~~~~ 400 (437)
..|.+|+++ ||.+.-||.-...++-.
T Consensus 5 iRC~~CnKlLa~a~~~~yle~KCPrCK~vN~~~ 37 (60)
T COG4416 5 IRCAKCNKLLAEAEGQAYLEKKCPRCKEVNEFY 37 (60)
T ss_pred eehHHHhHHHHhcccceeeeecCCccceeeeee
Confidence 468888875 79999999976665543
No 127
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=22.92 E-value=38 Score=34.83 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=16.5
Q ss_pred cccccccccccccC--CCCCCc
Q 047084 374 PIICYQCGKYGHNS--IVCQSK 393 (437)
Q Consensus 374 p~~C~~cg~~gH~~--~~C~~~ 393 (437)
-+.|..||-+||.. +.||.-
T Consensus 937 tr~C~nCGQvGHmkTNK~CP~f 958 (968)
T COG5179 937 TRTCGNCGQVGHMKTNKACPKF 958 (968)
T ss_pred ceecccccccccccccccCccc
Confidence 47899999999975 568874
No 128
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=22.75 E-value=79 Score=23.32 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=32.0
Q ss_pred ecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEE
Q 047084 304 LPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAV 347 (437)
Q Consensus 304 i~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V 347 (437)
...||.-+.+.-+...+|...|.++++--.+......-+.|+.|
T Consensus 34 ~~qLP~I~~~DPv~r~~g~k~GdVvkI~R~S~taG~~v~YR~Vv 77 (79)
T PRK09570 34 PEQLPKIKASDPVVKAIGAKPGDVIKIVRKSPTAGEAVYYRLVV 77 (79)
T ss_pred HHHCCceeccChhhhhcCCCCCCEEEEEECCCCCCccEEEEEEe
Confidence 34677778888899999999999999988755433333445444
No 129
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=22.35 E-value=52 Score=22.93 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=9.5
Q ss_pred CeEEEEEEccCcccccccccc
Q 047084 363 GKIQKVEYEGLPIICYQCGKY 383 (437)
Q Consensus 363 g~~~~v~YE~lp~~C~~cg~~ 383 (437)
+..-.+.|-.+...|.+||.|
T Consensus 37 ~~~s~v~fH~lg~KC~~C~SY 57 (61)
T PF14599_consen 37 NAKSEVPFHFLGHKCSHCGSY 57 (61)
T ss_dssp --EEEEE--TT----TTTS--
T ss_pred CCccceeeeHhhhcCCCCCCc
Confidence 344578999999999999976
No 130
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.91 E-value=49 Score=22.62 Aligned_cols=17 Identities=24% Similarity=0.706 Sum_probs=14.0
Q ss_pred cccccccccccccCCCC
Q 047084 374 PIICYQCGKYGHNSIVC 390 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C 390 (437)
..||+.|+.-.|....|
T Consensus 48 ~~fC~~C~~~~H~~~~C 64 (64)
T smart00647 48 FSFCFRCKVPWHSPVSC 64 (64)
T ss_pred CeECCCCCCcCCCCCCC
Confidence 57899999999987655
No 131
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=21.03 E-value=1.2e+02 Score=22.15 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=29.6
Q ss_pred CCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEE
Q 047084 306 GMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIA 346 (437)
Q Consensus 306 ~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~ 346 (437)
.||--..+.-+...+|...|.++++--.+.....--|.|+.
T Consensus 39 qLPkI~~~DPva~~lgak~GdvVkIvRkS~TaGe~v~YR~V 79 (80)
T COG2012 39 QLPKIKASDPVAKALGAKPGDVVKIVRKSPTAGESVYYRLV 79 (80)
T ss_pred HCCcccccChhHHHccCCCCcEEEEEecCCCCCceEEEEEe
Confidence 46666677788999999999999987765544444455554
Done!