Query 047084
Match_columns 437
No_of_seqs 392 out of 3558
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 190.5 16.3 182 1-187 84-290 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 4E-23 1.4E-27 197.0 5.1 235 1-275 53-306 (313)
3 3rgz_A Protein brassinosteroid 99.9 1.4E-22 4.9E-27 216.2 9.1 270 1-276 397-743 (768)
4 2id5_A Lingo-1, leucine rich r 99.8 7.5E-23 2.6E-27 206.5 0.7 278 1-284 35-344 (477)
5 4eco_A Uncharacterized protein 99.8 4.9E-22 1.7E-26 207.5 5.2 247 1-255 209-527 (636)
6 4eco_A Uncharacterized protein 99.8 4.8E-22 1.6E-26 207.6 4.8 247 2-254 85-470 (636)
7 4fcg_A Uncharacterized protein 99.8 2.2E-20 7.5E-25 179.2 13.5 161 1-167 107-289 (328)
8 3rgz_A Protein brassinosteroid 99.8 1.9E-21 6.5E-26 207.4 4.6 182 1-187 321-551 (768)
9 4ecn_A Leucine-rich repeat pro 99.8 2.4E-21 8.3E-26 206.9 4.5 247 1-255 451-767 (876)
10 1xku_A Decorin; proteoglycan, 99.8 7E-21 2.4E-25 182.7 6.9 99 2-107 56-156 (330)
11 3v47_A TOLL-like receptor 5B a 99.8 5.4E-21 1.8E-25 191.5 6.2 102 1-107 33-140 (455)
12 3t6q_A CD180 antigen; protein- 99.8 2.9E-21 1E-25 200.6 4.2 277 1-284 257-571 (606)
13 4ecn_A Leucine-rich repeat pro 99.8 2E-21 6.8E-26 207.5 3.0 244 1-252 494-787 (876)
14 2id5_A Lingo-1, leucine rich r 99.8 7E-21 2.4E-25 192.0 6.0 249 1-255 59-334 (477)
15 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-20 4E-25 181.3 6.3 198 1-207 57-279 (332)
16 1ogq_A PGIP-2, polygalacturona 99.8 6.2E-20 2.1E-24 174.8 9.6 182 1-187 79-281 (313)
17 2z7x_B TOLL-like receptor 1, v 99.8 3.5E-20 1.2E-24 189.0 8.2 248 1-254 24-412 (520)
18 2z80_A TOLL-like receptor 2, v 99.8 8.2E-21 2.8E-25 184.0 1.8 232 3-254 36-290 (353)
19 3t6q_A CD180 antigen; protein- 99.8 4.4E-20 1.5E-24 191.7 6.9 253 1-258 281-564 (606)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.3E-20 1.8E-24 189.5 7.4 101 1-107 55-157 (562)
21 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.8E-24 173.6 9.7 178 1-189 34-231 (330)
22 3zyj_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 177.2 13.4 184 1-190 67-271 (440)
23 2z66_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 171.6 9.4 185 1-189 31-238 (306)
24 1wwl_A Monocyte differentiatio 99.8 2.9E-19 9.8E-24 170.2 10.6 163 1-167 98-286 (312)
25 3vq2_A TLR4, TOLL-like recepto 99.8 1.9E-20 6.6E-25 194.4 2.5 159 127-286 391-571 (606)
26 3zyj_A Leucine-rich repeat-con 99.8 2E-19 6.8E-24 179.6 9.6 226 2-254 47-292 (440)
27 3zyi_A Leucine-rich repeat-con 99.8 5E-19 1.7E-23 177.3 12.1 183 1-190 78-282 (452)
28 2z66_A Variable lymphocyte rec 99.8 6.7E-20 2.3E-24 173.9 5.0 229 1-256 10-263 (306)
29 3g06_A SSPH2 (leucine-rich rep 99.8 1.4E-19 4.7E-24 187.2 7.3 233 1-254 43-297 (622)
30 1ozn_A Reticulon 4 receptor; N 99.8 4.6E-19 1.6E-23 166.4 10.1 101 2-107 36-140 (285)
31 3zyi_A Leucine-rich repeat-con 99.8 2.5E-19 8.4E-24 179.5 8.6 227 2-255 58-304 (452)
32 3o6n_A APL1; leucine-rich repe 99.8 7.8E-20 2.7E-24 179.5 4.7 243 1-254 48-308 (390)
33 2z7x_B TOLL-like receptor 1, v 99.8 2.2E-19 7.4E-24 183.0 7.9 79 1-81 48-129 (520)
34 3v47_A TOLL-like receptor 5B a 99.8 1.6E-19 5.3E-24 180.9 6.6 246 2-256 14-362 (455)
35 2ft3_A Biglycan; proteoglycan, 99.8 2.5E-19 8.4E-24 172.1 7.5 222 1-254 36-277 (332)
36 3oja_B Anopheles plasmodium-re 99.8 8.3E-20 2.9E-24 189.3 4.3 139 2-148 55-205 (597)
37 4fmz_A Internalin; leucine ric 99.8 3.6E-19 1.2E-23 171.8 8.4 137 1-148 47-190 (347)
38 3o6n_A APL1; leucine-rich repe 99.8 7.6E-20 2.6E-24 179.6 3.4 227 20-254 44-285 (390)
39 2o6q_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 159.0 14.1 180 1-187 19-218 (270)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.2E-19 7.5E-24 184.9 5.8 269 1-277 79-514 (562)
41 3oja_B Anopheles plasmodium-re 99.8 1.4E-19 4.8E-24 187.6 4.2 240 1-253 78-336 (597)
42 3j0a_A TOLL-like receptor 5; m 99.8 3E-19 1E-23 192.4 6.5 148 1-153 27-192 (844)
43 2z62_A TOLL-like receptor 4, v 99.8 5.4E-19 1.8E-23 165.1 7.4 229 3-270 12-253 (276)
44 3bz5_A Internalin-J, INLJ; leu 99.8 9.5E-19 3.3E-23 175.3 9.1 191 1-207 45-248 (457)
45 1ziw_A TOLL-like receptor 3; i 99.8 1.7E-19 5.8E-24 189.8 3.8 278 1-286 251-636 (680)
46 1jl5_A Outer protein YOPM; leu 99.8 2.1E-19 7.2E-24 179.9 4.2 74 2-80 135-208 (454)
47 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-18 8.6E-23 161.3 10.6 217 1-258 14-242 (285)
48 3j0a_A TOLL-like receptor 5; m 99.7 4.9E-19 1.7E-23 190.7 6.3 249 1-254 51-375 (844)
49 2z62_A TOLL-like receptor 4, v 99.7 3.1E-18 1E-22 160.0 10.7 182 1-187 31-237 (276)
50 1ziw_A TOLL-like receptor 3; i 99.7 6.2E-19 2.1E-23 185.5 6.7 148 1-153 28-189 (680)
51 1o6v_A Internalin A; bacterial 99.7 8.3E-19 2.8E-23 176.4 7.1 76 2-80 50-125 (466)
52 4fmz_A Internalin; leucine ric 99.7 7.5E-19 2.6E-23 169.6 6.4 241 1-254 69-324 (347)
53 2z81_A CD282 antigen, TOLL-lik 99.7 2.4E-19 8.3E-24 183.8 2.8 122 131-256 383-512 (549)
54 2z81_A CD282 antigen, TOLL-lik 99.7 2.3E-19 7.9E-24 184.0 2.4 145 1-149 29-210 (549)
55 1h6u_A Internalin H; cell adhe 99.7 7.4E-18 2.5E-22 160.0 11.7 175 1-187 44-230 (308)
56 1jl5_A Outer protein YOPM; leu 99.7 3.6E-18 1.2E-22 170.9 9.6 212 21-254 131-350 (454)
57 3vq2_A TLR4, TOLL-like recepto 99.7 1.5E-18 5.3E-23 180.0 6.9 178 2-186 15-216 (606)
58 1p9a_G Platelet glycoprotein I 99.7 1.4E-17 4.9E-22 156.7 12.8 139 1-148 13-161 (290)
59 1wwl_A Monocyte differentiatio 99.7 1.3E-18 4.6E-23 165.5 5.3 182 2-188 67-288 (312)
60 1o6v_A Internalin A; bacterial 99.7 1.8E-18 6.3E-23 173.9 6.5 238 1-254 71-322 (466)
61 4g8a_A TOLL-like receptor 4; l 99.7 5.1E-19 1.8E-23 184.1 1.9 81 1-81 55-138 (635)
62 2z63_A TOLL-like receptor 4, v 99.7 1.9E-18 6.6E-23 177.8 6.2 103 1-107 55-160 (570)
63 2o6q_A Variable lymphocyte rec 99.7 2.4E-17 8.1E-22 153.5 12.7 162 1-167 40-217 (270)
64 4glp_A Monocyte differentiatio 99.7 1.1E-17 3.9E-22 158.9 10.7 183 1-187 94-307 (310)
65 3m19_A Variable lymphocyte rec 99.7 3.9E-17 1.3E-21 150.3 13.5 165 1-187 17-192 (251)
66 1p9a_G Platelet glycoprotein I 99.7 1.2E-17 4E-22 157.2 10.1 165 1-187 34-208 (290)
67 2z80_A TOLL-like receptor 2, v 99.7 1.3E-17 4.6E-22 161.3 10.7 160 1-167 55-234 (353)
68 3rfs_A Internalin B, repeat mo 99.7 8.9E-17 3E-21 149.8 14.3 165 1-187 44-218 (272)
69 2xwt_C Thyrotropin receptor; s 99.7 3.6E-17 1.2E-21 149.3 10.7 167 2-191 35-222 (239)
70 3e6j_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 141.9 14.7 149 1-187 22-172 (229)
71 3m19_A Variable lymphocyte rec 99.7 1.5E-16 5E-21 146.5 12.3 148 1-153 38-197 (251)
72 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.8E-21 141.0 11.1 126 1-149 47-173 (197)
73 3bz5_A Internalin-J, INLJ; leu 99.7 2.2E-16 7.4E-21 158.1 13.6 175 1-191 67-250 (457)
74 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4.2E-21 166.1 12.0 146 3-156 36-194 (635)
75 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-18 4.3E-23 166.1 -3.0 205 18-254 31-250 (317)
76 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-16 6.3E-21 142.8 11.1 131 1-153 14-147 (220)
77 3g06_A SSPH2 (leucine-rich rep 99.7 5.8E-17 2E-21 167.5 8.4 213 2-235 65-302 (622)
78 3rfs_A Internalin B, repeat mo 99.7 3.5E-16 1.2E-20 145.7 12.5 147 1-153 66-223 (272)
79 1w8a_A SLIT protein; signaling 99.7 3.6E-16 1.2E-20 137.8 11.7 130 1-152 11-143 (192)
80 1h6t_A Internalin B; cell adhe 99.7 2.5E-16 8.5E-21 148.2 11.3 159 1-187 49-213 (291)
81 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.9E-21 146.0 8.7 177 8-209 21-222 (239)
82 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.4E-21 161.1 10.0 175 1-188 37-228 (487)
83 2v9t_B SLIT homolog 2 protein 99.7 2.6E-16 8.9E-21 141.8 10.9 127 1-150 14-143 (220)
84 2z63_A TOLL-like receptor 4, v 99.7 2.4E-17 8.2E-22 169.6 4.5 250 3-263 262-540 (570)
85 3o53_A Protein LRIM1, AGAP0063 99.7 8.9E-17 3E-21 153.2 7.5 191 1-205 37-250 (317)
86 3cvr_A Invasion plasmid antige 99.7 2.9E-16 9.9E-21 160.5 11.8 165 1-187 62-243 (571)
87 4b8c_D Glucose-repressible alc 99.7 4.4E-17 1.5E-21 172.1 5.2 149 13-184 216-369 (727)
88 3oja_A Leucine-rich immune mol 99.6 6E-17 2.1E-21 163.5 5.6 213 10-254 19-250 (487)
89 2xot_A Amphoterin-induced prot 99.6 3.4E-16 1.2E-20 151.9 9.8 141 1-148 21-176 (361)
90 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.2E-20 133.9 12.6 126 1-149 13-140 (193)
91 1h6u_A Internalin H; cell adhe 99.6 3.9E-16 1.3E-20 148.1 9.1 156 1-167 66-229 (308)
92 2ell_A Acidic leucine-rich nuc 99.6 7.6E-16 2.6E-20 132.5 10.1 131 1-153 27-164 (168)
93 3e6j_A Variable lymphocyte rec 99.6 1.8E-15 6.3E-20 137.1 12.6 130 1-152 43-176 (229)
94 2o6s_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 133.6 12.7 144 1-151 10-164 (208)
95 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.5E-20 156.5 11.9 137 1-148 46-188 (605)
96 1xeu_A Internalin C; cellular 99.6 7.2E-16 2.5E-20 142.9 8.1 156 3-187 24-185 (263)
97 2o6s_A Variable lymphocyte rec 99.6 6.8E-16 2.3E-20 137.7 7.4 147 1-158 31-188 (208)
98 4glp_A Monocyte differentiatio 99.6 6.4E-16 2.2E-20 146.7 7.2 165 19-188 89-286 (310)
99 4ay9_X Follicle-stimulating ho 99.6 2E-15 6.8E-20 145.9 10.4 183 1-191 12-219 (350)
100 1xeu_A Internalin C; cellular 99.6 2.9E-15 9.8E-20 138.8 10.7 138 1-150 44-187 (263)
101 1h6t_A Internalin B; cell adhe 99.6 3.5E-15 1.2E-19 140.4 10.8 138 1-149 71-214 (291)
102 2je0_A Acidic leucine-rich nuc 99.6 5.4E-15 1.9E-19 124.5 8.6 122 1-143 20-148 (149)
103 3goz_A Leucine-rich repeat-con 99.6 1.7E-15 5.7E-20 147.1 6.2 234 2-254 2-297 (362)
104 2xot_A Amphoterin-induced prot 99.6 2.9E-15 9.9E-20 145.4 7.8 144 1-149 42-203 (361)
105 4ezg_A Putative uncharacterize 99.6 9.5E-15 3.2E-19 129.1 10.1 148 17-187 40-194 (197)
106 4b8c_D Glucose-repressible alc 99.5 9.1E-15 3.1E-19 154.4 10.6 102 1-108 227-328 (727)
107 2o6r_A Variable lymphocyte rec 99.5 3E-14 1E-18 123.6 11.8 129 1-152 10-141 (177)
108 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4E-19 126.1 8.3 83 17-107 15-99 (176)
109 3cvr_A Invasion plasmid antige 99.5 5.4E-15 1.8E-19 151.1 6.8 145 1-167 83-242 (571)
110 2ast_B S-phase kinase-associat 99.5 9.4E-16 3.2E-20 147.0 1.2 180 1-184 73-282 (336)
111 2ca6_A RAN GTPase-activating p 99.5 2.5E-15 8.7E-20 147.1 2.2 230 11-254 22-316 (386)
112 2ca6_A RAN GTPase-activating p 99.5 1.7E-15 5.7E-20 148.4 0.8 187 1-188 35-288 (386)
113 1m9s_A Internalin B; cell inva 99.5 4.2E-14 1.4E-18 145.9 11.2 138 1-149 68-211 (605)
114 1dce_A Protein (RAB geranylger 99.5 6.7E-14 2.3E-18 143.4 12.0 107 22-152 442-550 (567)
115 2v9t_B SLIT homolog 2 protein 99.5 4E-14 1.4E-18 127.4 8.7 128 1-149 35-166 (220)
116 1w8a_A SLIT protein; signaling 99.5 6E-14 2.1E-18 123.5 9.2 104 1-109 32-139 (192)
117 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4.2E-18 133.3 11.7 161 1-167 33-214 (350)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 7.3E-14 2.5E-18 125.7 8.7 131 1-151 35-169 (220)
119 2wfh_A SLIT homolog 2 protein 99.5 1.6E-13 5.4E-18 120.9 10.6 102 1-108 34-138 (193)
120 1z7x_W Ribonuclease inhibitor; 99.5 7.7E-16 2.6E-20 154.2 -5.7 147 1-148 59-240 (461)
121 3g39_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 117.7 10.3 101 1-108 12-114 (170)
122 3goz_A Leucine-rich repeat-con 99.5 1.4E-14 4.7E-19 140.6 3.2 186 1-187 25-266 (362)
123 2ast_B S-phase kinase-associat 99.5 1.7E-14 5.7E-19 138.3 3.5 182 1-187 96-306 (336)
124 2r9u_A Variable lymphocyte rec 99.4 2.5E-13 8.5E-18 117.5 10.0 101 1-109 15-118 (174)
125 1z7x_W Ribonuclease inhibitor; 99.4 1.5E-14 5.2E-19 144.7 1.8 204 1-205 6-269 (461)
126 1ds9_A Outer arm dynein; leuci 99.4 4.1E-14 1.4E-18 125.1 1.1 120 10-153 37-158 (198)
127 2ell_A Acidic leucine-rich nuc 99.4 1.4E-12 4.8E-17 111.9 9.8 101 1-108 52-159 (168)
128 1a9n_A U2A', U2A'; complex (nu 99.4 7.3E-13 2.5E-17 114.7 7.7 128 1-148 22-153 (176)
129 1dce_A Protein (RAB geranylger 99.4 1.7E-12 5.7E-17 133.1 11.2 99 2-106 445-543 (567)
130 2o6r_A Variable lymphocyte rec 99.4 2.4E-12 8.3E-17 111.4 10.5 102 1-108 31-136 (177)
131 1ds9_A Outer arm dynein; leuci 99.4 6.5E-14 2.2E-18 123.8 -0.1 135 1-149 51-186 (198)
132 2je0_A Acidic leucine-rich nuc 99.3 1.4E-12 4.8E-17 109.6 6.7 101 1-105 45-149 (149)
133 2r9u_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 108.4 9.6 106 23-153 14-122 (174)
134 3g39_A Variable lymphocyte rec 99.3 7.1E-12 2.4E-16 107.8 9.6 106 22-150 10-117 (170)
135 2ifg_A High affinity nerve gro 99.2 1.5E-11 5.3E-16 118.2 8.9 101 2-110 12-117 (347)
136 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.7E-15 111.5 9.0 104 24-149 11-117 (347)
137 3ogk_B Coronatine-insensitive 99.1 1.8E-12 6E-17 133.9 -5.7 143 1-143 167-350 (592)
138 3ogk_B Coronatine-insensitive 99.0 6.7E-12 2.3E-16 129.5 -7.1 99 2-104 196-326 (592)
139 3sb4_A Hypothetical leucine ri 98.9 8.9E-10 3.1E-14 105.1 6.4 73 1-74 52-155 (329)
140 3un9_A NLR family member X1; l 98.9 2.2E-10 7.6E-15 111.2 0.7 136 1-148 75-224 (372)
141 3sb4_A Hypothetical leucine ri 98.8 8.9E-09 3E-13 98.1 7.6 78 20-103 48-155 (329)
142 3un9_A NLR family member X1; l 98.7 1.4E-09 4.9E-14 105.4 -1.4 156 20-187 71-252 (372)
143 2p1m_B Transport inhibitor res 98.5 9.4E-09 3.2E-13 105.8 0.1 13 175-187 482-494 (594)
144 2p1m_B Transport inhibitor res 98.5 3.8E-08 1.3E-12 101.3 3.7 88 19-107 103-195 (594)
145 4fdw_A Leucine rich hypothetic 98.5 1.6E-06 5.5E-11 84.7 13.8 53 22-75 158-211 (401)
146 1io0_A Tropomodulin; LRR prote 98.5 6.5E-08 2.2E-12 84.0 3.4 120 17-148 32-164 (185)
147 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.8E-12 82.6 3.8 109 1-110 39-165 (185)
148 4fdw_A Leucine rich hypothetic 98.3 3.4E-06 1.1E-10 82.4 10.3 137 3-148 162-335 (401)
149 2ra8_A Uncharacterized protein 98.2 2.4E-06 8.2E-11 82.1 8.3 16 134-149 278-293 (362)
150 3rw6_A Nuclear RNA export fact 98.2 2.9E-07 1E-11 84.3 1.7 86 18-108 138-232 (267)
151 3rw6_A Nuclear RNA export fact 98.0 1.7E-06 5.8E-11 79.2 2.6 63 18-81 167-234 (267)
152 2ra8_A Uncharacterized protein 98.0 8.9E-06 3E-10 78.2 7.3 116 17-149 135-266 (362)
153 3e4g_A ATP synthase subunit S, 97.5 0.00011 3.9E-09 62.4 5.1 91 12-107 52-150 (176)
154 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00048 1.6E-08 59.7 4.0 118 19-148 39-170 (197)
155 3e4g_A ATP synthase subunit S, 96.9 0.00082 2.8E-08 57.1 4.6 78 1-78 64-150 (176)
156 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.6E-08 52.0 6.0 54 25-80 12-68 (130)
157 3rfe_A Platelet glycoprotein I 96.7 0.0018 6.1E-08 52.2 5.0 52 48-107 12-66 (130)
158 1dsq_A Nucleic acid binding pr 96.6 0.00086 2.9E-08 37.3 1.8 21 374-394 2-22 (26)
159 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0012 4.2E-08 57.1 3.7 108 1-109 44-170 (197)
160 1nc8_A Nucleocapsid protein; H 96.6 0.00083 2.8E-08 38.5 1.7 22 374-395 6-27 (29)
161 4gt6_A Cell surface protein; l 96.3 0.014 4.8E-07 56.3 9.9 105 17-147 261-369 (394)
162 4gt6_A Cell surface protein; l 96.3 0.013 4.4E-07 56.6 9.2 106 16-148 283-391 (394)
163 1a6b_B Momulv, zinc finger pro 96.3 0.0019 6.4E-08 39.9 1.9 23 374-396 10-32 (40)
164 4fs7_A Uncharacterized protein 96.1 0.0085 2.9E-07 57.9 6.6 103 16-145 271-376 (394)
165 4h09_A Hypothetical leucine ri 95.9 0.027 9.3E-07 53.9 9.2 119 17-144 213-342 (379)
166 4fs7_A Uncharacterized protein 95.7 0.032 1.1E-06 53.8 9.0 111 10-148 241-355 (394)
167 1u6p_A GAG polyprotein; MLV, A 95.6 0.0047 1.6E-07 41.2 1.7 23 374-396 23-45 (56)
168 4h09_A Hypothetical leucine ri 95.2 0.037 1.3E-06 52.9 7.3 102 10-119 228-337 (379)
169 2hqh_E Restin; beta/BETA struc 95.1 0.0065 2.2E-07 32.8 1.0 21 374-394 3-23 (26)
170 2ysa_A Retinoblastoma-binding 95.0 0.0088 3E-07 39.7 1.6 22 375-396 8-29 (55)
171 3nyb_B Protein AIR2; polya RNA 93.5 0.042 1.4E-06 40.0 2.7 23 374-396 46-68 (83)
172 2ec7_A GAG polyprotein (PR55GA 93.3 0.036 1.2E-06 35.9 1.8 22 373-394 5-26 (49)
173 2bl6_A Nucleocapsid protein P1 92.8 0.047 1.6E-06 33.0 1.7 18 376-393 2-19 (37)
174 2a51_A Nucleocapsid protein; s 92.7 0.05 1.7E-06 33.3 1.7 18 376-393 2-19 (39)
175 2ihx_A Nucleocapsid (NC) prote 92.3 0.053 1.8E-06 37.0 1.6 21 374-394 4-24 (61)
176 2ihx_A Nucleocapsid (NC) prote 92.2 0.052 1.8E-06 37.0 1.5 23 374-396 30-52 (61)
177 2ec7_A GAG polyprotein (PR55GA 92.1 0.056 1.9E-06 35.0 1.5 20 375-394 28-47 (49)
178 2bl6_A Nucleocapsid protein P1 91.8 0.054 1.9E-06 32.7 1.1 19 374-392 19-37 (37)
179 1a1t_A Nucleocapsid protein; s 91.7 0.063 2.1E-06 35.7 1.5 21 373-393 11-31 (55)
180 2a51_A Nucleocapsid protein; s 91.6 0.075 2.6E-06 32.5 1.6 19 374-392 21-39 (39)
181 2cqf_A RNA-binding protein LIN 90.9 0.12 4.2E-06 35.4 2.3 19 375-393 30-48 (63)
182 2cqf_A RNA-binding protein LIN 90.3 0.11 3.9E-06 35.6 1.7 21 373-393 6-26 (63)
183 1cl4_A Protein (GAG polyprotei 90.1 0.15 5.1E-06 34.5 2.2 22 373-394 29-50 (60)
184 1a1t_A Nucleocapsid protein; s 89.9 0.11 3.8E-06 34.5 1.4 20 375-394 34-53 (55)
185 2li8_A Protein LIN-28 homolog 89.2 0.18 6.3E-06 35.7 2.1 20 373-392 23-42 (74)
186 2li8_A Protein LIN-28 homolog 89.0 0.14 4.9E-06 36.3 1.5 20 375-394 47-66 (74)
187 1cl4_A Protein (GAG polyprotei 87.7 0.1 3.5E-06 35.4 0.0 20 375-394 2-21 (60)
188 2pzo_E CAP-Gly domain-containi 87.7 0.18 6.1E-06 30.5 1.0 21 374-394 20-40 (42)
189 3nyb_B Protein AIR2; polya RNA 86.7 0.17 5.8E-06 36.8 0.7 23 372-394 3-25 (83)
190 3ts2_A Protein LIN-28 homolog 86.7 0.22 7.5E-06 40.7 1.4 20 375-394 98-117 (148)
191 3e2u_E CAP-Gly domain-containi 82.8 0.44 1.5E-05 29.0 1.1 21 374-394 20-40 (42)
192 3ts2_A Protein LIN-28 homolog 81.5 0.51 1.7E-05 38.5 1.5 23 374-396 119-141 (148)
193 2lli_A Protein AIR2; RNA surve 73.7 1.3 4.4E-05 34.8 1.7 20 373-392 104-123 (124)
194 2lli_A Protein AIR2; RNA surve 72.5 1.4 4.8E-05 34.6 1.6 15 377-391 7-21 (124)
195 1l3k_A Heterogeneous nuclear r 62.3 63 0.0022 26.4 10.3 82 252-334 57-138 (196)
196 1ef4_A Subunit N, DNA-directed 56.6 3.4 0.00012 27.0 0.8 14 373-386 2-16 (55)
197 4ayb_N DNA-directed RNA polyme 54.7 4 0.00014 27.8 0.9 14 373-386 3-17 (66)
198 1twf_J DNA-directed RNA polyme 52.6 4.5 0.00015 27.9 0.9 13 373-385 3-16 (70)
199 4ayb_H DNA-directed RNA polyme 46.5 15 0.00051 26.4 2.9 44 305-348 40-83 (84)
200 2ghp_A U4/U6 snRNA-associated 46.0 84 0.0029 27.8 8.9 86 250-335 159-246 (292)
201 3alr_A Nanos protein; zinc-fin 42.6 11 0.00036 28.1 1.6 22 375-396 72-96 (106)
202 1fje_B Nucleolin RBD12, protei 33.3 1.5E+02 0.0051 23.5 7.8 116 249-372 53-172 (175)
203 2yqp_A Probable ATP-dependent 32.7 13 0.00044 24.3 0.7 16 375-392 20-35 (60)
204 1hmj_A RPB5, protein (subunit 26.5 52 0.0018 23.2 3.0 45 304-348 31-75 (78)
205 2row_A RHO-associated protein 25.3 47 0.0016 23.8 2.6 25 359-383 20-44 (84)
206 1wwh_A Nucleoporin 35, nucleop 25.0 1.6E+02 0.0054 22.6 5.8 34 297-332 22-55 (119)
207 2lz0_A Uncharacterized protein 24.8 85 0.0029 23.0 4.2 44 8-52 6-51 (100)
208 2w0t_A Lethal(3)malignant brai 23.1 24 0.00081 21.7 0.6 16 374-389 6-21 (43)
209 2lz0_A Uncharacterized protein 21.8 75 0.0026 23.4 3.3 43 33-76 8-52 (100)
210 3sde_A Paraspeckle component 1 21.1 3.1E+02 0.011 23.6 8.0 94 223-333 33-129 (261)
211 1eik_A RNA polymerase subunit 20.0 38 0.0013 23.8 1.2 41 304-346 33-73 (77)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5.2e-22 Score=190.49 Aligned_cols=182 Identities=21% Similarity=0.303 Sum_probs=154.8
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|+|++|.++.+|+.++++++|++|+|++|.+..+|..++++++|++|++++|.+..+|..++++++|++|++++|++.
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccccccccccc---------CCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeC
Q 047084 81 AGFAAAKLHEGFG---------SLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRS 144 (437)
Q Consensus 81 ~~~~~~~lp~~~~---------~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~ 144 (437)
+.. |..++ ++++|++|++++|. +..+..+..|+.+ +|.+..+|..+..+++|++|++++
T Consensus 164 ~~~-----p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 164 TEL-----PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp CCC-----CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred ccc-----ChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 654 65554 49999999999998 3445555555544 788888999999999999999999
Q ss_pred CcCCCCCCCCc----hhhhhhcCCCCC----C-CCchhccceeeecCCCCcc
Q 047084 145 HEVDADSPSPL----SFKDALVHPEQY----R-SSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 145 N~l~~~~p~~~----~~~~~~l~~n~l----~-~~~~~~~~~~L~L~~n~l~ 187 (437)
|++.+.+|..+ ++..+.+++|.+ + .+.....++.|+|++|++.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 99998888765 566777888766 1 2334456788999999987
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=4e-23 Score=196.95 Aligned_cols=235 Identities=14% Similarity=0.157 Sum_probs=156.8
Q ss_pred CEEEecCCCCC---cCCccccCCCCCcEEEeec-ccC-cccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEec
Q 047084 1 KVLDLEDAPVD---YLPEGVGNLFNLHYLSVKN-TKV-KIIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMV 74 (437)
Q Consensus 1 ~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~-n~l-~~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l 74 (437)
+.|+|++|.++ .+|..+.++++|++|++++ |.+ +.+|..++++++|++|++++|.+. .+|..+.++++|++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 36889999986 6888999999999999995 777 488888999999999999966665 78888999999999999
Q ss_pred eeeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCC-CCCeEEeeCCcCCCCCCC
Q 047084 75 YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADR-STKKARFRSHEVDADSPS 153 (437)
Q Consensus 75 ~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~-~L~~L~l~~N~l~~~~p~ 153 (437)
++|.+++. +|..+..+++|++|++++|... +.+|..++.++ +|++|++++|++++.+|.
T Consensus 133 s~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~---------------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 133 SYNALSGT-----LPPSISSLPNLVGITFDGNRIS---------------GAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CSSEEESC-----CCGGGGGCTTCCEEECCSSCCE---------------EECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCCccCCc-----CChHHhcCCCCCeEECcCCccc---------------CcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 99999864 3788899999999999987621 23444444444 455555555555444443
Q ss_pred Cch---hhhhhcCCCCCC-----CCchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcC
Q 047084 154 PLS---FKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIG 225 (437)
Q Consensus 154 ~~~---~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls 225 (437)
.+. +..+.+++|++. .+.....++.|+|++|+++. ..+.+. ...++..++++
T Consensus 193 ~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~----------------~l~~L~~L~Ls 252 (313)
T 1ogq_A 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGKVG----------------LSKNLNGLDLR 252 (313)
T ss_dssp GGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC----BGGGCC----------------CCTTCCEEECC
T ss_pred HHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee----ecCccc----------------ccCCCCEEECc
Confidence 321 222333333330 11122345667777777751 111110 01123334566
Q ss_pred HHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHh----HHcCceEEc
Q 047084 226 YKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYA----LTEGPWVIF 275 (437)
Q Consensus 226 ~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~v----l~~~pw~~~ 275 (437)
.|.+++.++..+.....++.+++++|.+....+....+..+ +.++||.++
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 66666566677778889999999999999877765443332 566777664
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.4e-22 Score=216.15 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=196.0
Q ss_pred CEEEecCCCCC-cCCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~n 77 (437)
++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 46777777774 66778888888888888888884 77888888888888888855554 77888888888888888888
Q ss_pred ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---cccc-ccCCchhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLL-KTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~-~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
++++.. |..++.+++|+.|++++|+ +..+..+..|+.+ +|.+ +.+|..+..+++|+.|++++|+++
T Consensus 477 ~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 477 DLTGEI-----PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCCSCC-----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cccCcC-----CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 888654 7788889999999999887 3455555555555 4554 588888999999999999999999
Q ss_pred CCCCCCchhhhh----hc----------------------------------------------CCCCC-----CCCchh
Q 047084 149 ADSPSPLSFKDA----LV----------------------------------------------HPEQY-----RSSEDA 173 (437)
Q Consensus 149 ~~~p~~~~~~~~----~l----------------------------------------------~~n~l-----~~~~~~ 173 (437)
|.+|..+..... .+ ..|.+ ..+...
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 888865421100 00 00111 011223
Q ss_pred ccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEE
Q 047084 174 EMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVID 247 (437)
Q Consensus 174 ~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~ 247 (437)
..++.|||++|++++..+ ..+..+.++.|.+++..+..... ...+..+++++|.+++.+|..+..+..++.++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 345779999999984443 55667888888887554432111 23455678999999999999999999999999
Q ss_pred cCCcEEEEEeCChhhHHH----hHHcCceEEcC
Q 047084 248 LENNYFLIRLKSPEDAVY----ALTEGPWVIFG 276 (437)
Q Consensus 248 l~~N~f~~~f~~~~d~~~----vl~~~pw~~~~ 276 (437)
+++|.+....+....+.. ...++|+.|..
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 999999998876554433 25678887754
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.5e-23 Score=206.46 Aligned_cols=278 Identities=18% Similarity=0.177 Sum_probs=178.5
Q ss_pred CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.++ ..|.++++|++|+|++|.+..+ |..|.++++|++|++++|.++.+|.. |.++++|++|++++|
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 57899999998885 4788999999999999999755 67888999999999998888888875 788999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIPP-PLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip~-~~~~l~~L~~L~l~~N~l~ 148 (437)
.+++.. |..|..+++|+.|++++|. +..+..+..|+.+ +|.+..+|. .+..+++|+.|++++|.++
T Consensus 115 ~i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 115 KIVILL-----DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CCCEEC-----TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ccccCC-----hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 988543 5678888899999998886 2334444444444 666777774 5778888888888888887
Q ss_pred CCCCCCc----hhhhhhcCCCCC-----CCCchhccceeeecCCCCcccCC------CCCCCeEeechHHHhhhcccccc
Q 047084 149 ADSPSPL----SFKDALVHPEQY-----RSSEDAEMEEEWDLEPGDVTIGD------DGTMPTIKFSKRIQDKLIKPWQN 213 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l-----~~~~~~~~~~~L~L~~n~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~ 213 (437)
+..+..+ ++..+.++.|.. +.......++.|+|++|+++... ...+..+.++.|.+..+......
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 5433333 344455555443 11111223455666666665322 13455555665555443331110
Q ss_pred eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE----eCChhhHHHh-HHcCceEEcCceEEEeec
Q 047084 214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR----LKSPEDAVYA-LTEGPWVIFGHYLTVQPW 284 (437)
Q Consensus 214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~----f~~~~d~~~v-l~~~pw~~~~~~l~l~~w 284 (437)
...++..+.++.|.+....+..+.....++.+++++|.+... |.....++.+ +.++||.+++....+..|
T Consensus 270 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~ 344 (477)
T 2id5_A 270 -ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRR 344 (477)
T ss_dssp -TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred -ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhh
Confidence 011233345556666555566666777777777777765531 2222222222 566777776665444444
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=4.9e-22 Score=207.50 Aligned_cols=247 Identities=15% Similarity=0.180 Sum_probs=195.3
Q ss_pred CEEEecCCCCCc------------------CCcccc--CCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCc-cc-
Q 047084 1 KVLDLEDAPVDY------------------LPEGVG--NLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTL-VR- 57 (437)
Q Consensus 1 ~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~-~~- 57 (437)
++|+|++|.++. +|+.++ ++++|++|+|++|.+ +.+|..++++++|++|++++|. ++
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 689999999987 999998 999999999999997 6899999999999999999775 65
Q ss_pred -ccchhhcCC------cCCcEEeceeeccccccccccccc--cccCCccCcEEEeecCChH----hHhhccchHhc---c
Q 047084 58 -ELPVEIRNL------KRLRYLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLCIIEADSE----ALKELMKLRQL---R 121 (437)
Q Consensus 58 -~lp~~~~~L------~~L~~L~l~~n~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~----~~~~L~~L~~l---~ 121 (437)
.+|..+++| ++|++|++++|+++ .+|. .++.+++|++|++++|... .+..+..|+.+ +
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLK------TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCS------SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCC------ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence 599998887 99999999999998 5688 8999999999999999854 34344444444 6
Q ss_pred cccccCCchhhcCCC-CCeEEeeCCcCCCCCCCCc------hhhhhhcCCCCCCC-----Cc-------hhccceeeecC
Q 047084 122 NLLKTIPPPLAADRS-TKKARFRSHEVDADSPSPL------SFKDALVHPEQYRS-----SE-------DAEMEEEWDLE 182 (437)
Q Consensus 122 n~~~~ip~~~~~l~~-L~~L~l~~N~l~~~~p~~~------~~~~~~l~~n~l~~-----~~-------~~~~~~~L~L~ 182 (437)
|.+..+|..+..+++ |++|++++|+++ .+|..+ ++..+.++.|++.. +. ....++.|+|+
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred CccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 778899999999999 999999999999 788765 35667788888822 22 23356889999
Q ss_pred CCCcccCCC------CCCCeEeechHHHhhhcccccceEEE------EecCCCcCHHHHHHHHHhccc--CCCceEEEEc
Q 047084 183 PGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVV------KLLGRNIGYKVLCNRLKVMWH--QIHDFSVIDL 248 (437)
Q Consensus 183 ~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~------~l~~~~ls~n~l~~~l~~~w~--~~~~l~~l~l 248 (437)
+|+++..+. ..+..+.++.|.+..++......... ++..++++.|.++ .++..+. ....++.+++
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEEC
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEEC
Confidence 999984432 56777888888888655433221111 4555678888877 4566665 8889999999
Q ss_pred CCcEEEE
Q 047084 249 ENNYFLI 255 (437)
Q Consensus 249 ~~N~f~~ 255 (437)
++|.+..
T Consensus 521 s~N~l~~ 527 (636)
T 4eco_A 521 SYNSFSK 527 (636)
T ss_dssp CSSCCSS
T ss_pred CCCCCCC
Confidence 9998763
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=4.8e-22 Score=207.57 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=183.5
Q ss_pred EEEecCCCC-CcCCccccCCCCCcEEEeecccC-----------------------------------------------
Q 047084 2 VLDLEDAPV-DYLPEGVGNLFNLHYLSVKNTKV----------------------------------------------- 33 (437)
Q Consensus 2 ~L~L~~n~l-~~lp~~~~~l~~L~~L~L~~n~l----------------------------------------------- 33 (437)
.|+|++|.+ +.+|+++++|++|++|+|++|.+
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 689999998 68899999999999999999843
Q ss_pred -------------------------------cccChhhhcccCCCEEEccCCcccc------------------cchhhc
Q 047084 34 -------------------------------KIIPKSIGNLLGLETLDLKNTLVRE------------------LPVEIR 64 (437)
Q Consensus 34 -------------------------------~~lp~~~~~l~~L~~L~l~~~~~~~------------------lp~~~~ 64 (437)
+.+|+.++++++|++|++++|.+.. +|..++
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 2488899999999999999887877 999988
Q ss_pred --CCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC-hH------hHhhc------cchHhc---cccccc
Q 047084 65 --NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-SE------ALKEL------MKLRQL---RNLLKT 126 (437)
Q Consensus 65 --~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-~~------~~~~L------~~L~~l---~n~~~~ 126 (437)
++++|++|++++|.+.|. +|..++++++|++|++++|+ .. .+..+ ..|+.+ +|.+..
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTK-----LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSS-----CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred hcccCCCCEEEecCCcCCcc-----ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 999999999999999875 48899999999999999997 33 23333 444444 677789
Q ss_pred CCc--hhhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCC----CCchhcc-ceeeecCCCCcccCCC----
Q 047084 127 IPP--PLAADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYR----SSEDAEM-EEEWDLEPGDVTIGDD---- 191 (437)
Q Consensus 127 ip~--~~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~----~~~~~~~-~~~L~L~~n~l~~~~~---- 191 (437)
+|. .++.+++|++|++++|+++|.+| .+ ++..+.++.|++. .+..... ++.|++++|+++..+.
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 998 89999999999999999999899 55 4667778888772 2333444 7889999999873322
Q ss_pred ---CCCCeEeechHHHhhhcccccc------eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 192 ---GTMPTIKFSKRIQDKLIKPWQN------SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 192 ---~~lp~l~l~~n~l~~l~~~~~~------~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
..+..+.++.|.+....+.+.. ....++..++++.|.+.......+.....++.+++++|.+.
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 1345566666666654332111 01113344456666665444444555677777777777665
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.2e-20 Score=179.15 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=141.0
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEcc-CCcccccchhhcC---------CcCCc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLK-NTLVRELPVEIRN---------LKRLR 70 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~-~~~~~~lp~~~~~---------L~~L~ 70 (437)
++|+|++|.+..+|..++++++|++|+|++|.+..+|..++++++|++|+++ ++.++.+|..+.. +++|+
T Consensus 107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~ 186 (328)
T 4fcg_A 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186 (328)
T ss_dssp SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCC
T ss_pred CEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCC
Confidence 6899999999999999999999999999999999999999999999999999 5788899987764 99999
Q ss_pred EEeceeeccccccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---c-cccccCCchhhcCCCCCeEEe
Q 047084 71 YLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---R-NLLKTIPPPLAADRSTKKARF 142 (437)
Q Consensus 71 ~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~-n~~~~ip~~~~~l~~L~~L~l 142 (437)
+|++++|.++ .+|..++.+++|++|++++|. +..+..+..|+.+ + +..+.+|..+..+++|++|++
T Consensus 187 ~L~L~~n~l~------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 187 SLRLEWTGIR------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp EEEEEEECCC------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred EEECcCCCcC------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 9999999998 568889999999999999998 3445555555555 3 567889999999999999999
Q ss_pred eCCcCCCCCCCCc----hhhhhhcCCCCC
Q 047084 143 RSHEVDADSPSPL----SFKDALVHPEQY 167 (437)
Q Consensus 143 ~~N~l~~~~p~~~----~~~~~~l~~n~l 167 (437)
++|++.+.+|..+ ++..+.+++|.+
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 9999999999776 456677888776
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.9e-21 Score=207.44 Aligned_cols=182 Identities=20% Similarity=0.220 Sum_probs=104.4
Q ss_pred CEEEecCCCCC-cCCcc-ccCCCCCcEEEeecccCc-ccChhhhccc-CCCEEEccCCc---------------------
Q 047084 1 KVLDLEDAPVD-YLPEG-VGNLFNLHYLSVKNTKVK-IIPKSIGNLL-GLETLDLKNTL--------------------- 55 (437)
Q Consensus 1 ~~L~L~~n~l~-~lp~~-~~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~l~~~~--------------------- 55 (437)
++|++++|.+. .+|.. +.++++|++|++++|.+. .+|..+.++. +|++|++++|.
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 45677777764 66654 667777777777777764 6666666554 55555555332
Q ss_pred -----cc-ccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---c
Q 047084 56 -----VR-ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---R 121 (437)
Q Consensus 56 -----~~-~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~ 121 (437)
+. .+|..++++++|++|++++|.+++.. |..++.+++|+.|++++|. +..+..+..|+.+ +
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-----PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC-----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcc-----cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 22 44555556666666666666665432 5556666666666666665 2333333333333 3
Q ss_pred ccc-ccCCchhhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCC-----CCchhccceeeecCCCCcc
Q 047084 122 NLL-KTIPPPLAADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 122 n~~-~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~ 187 (437)
|.+ +.+|..+..+++|++|++++|++++.+|..+ ++..+.+++|++. .+.....++.|++++|+++
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 433 3566666666667777777777766666554 3445556666651 1222334566777777665
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2.4e-21 Score=206.87 Aligned_cols=247 Identities=15% Similarity=0.202 Sum_probs=189.7
Q ss_pred CEEEecCCCCCc------------------CCcccc--CCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCc-cc-
Q 047084 1 KVLDLEDAPVDY------------------LPEGVG--NLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTL-VR- 57 (437)
Q Consensus 1 ~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~-~~- 57 (437)
++|+|++|.++. +|+.++ ++++|++|+|++|.+ +.+|..++++++|++|++++|. +.
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 689999999977 999887 999999999999986 6899999999999999999775 65
Q ss_pred -ccchhhcCCc-------CCcEEeceeeccccccccccccc--cccCCccCcEEEeecCChHhH---hhccchHhc---c
Q 047084 58 -ELPVEIRNLK-------RLRYLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLCIIEADSEAL---KELMKLRQL---R 121 (437)
Q Consensus 58 -~lp~~~~~L~-------~L~~L~l~~n~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~~~---~~L~~L~~l---~ 121 (437)
.+|..+++++ +|++|++++|.++ .+|. .++++++|+.|++++|....+ ..+..|+.+ +
T Consensus 531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLE------EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC------BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred ccchHHHHhhhhcccccCCccEEEeeCCcCC------ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence 5898887776 9999999999998 5688 899999999999999984433 333333333 6
Q ss_pred cccccCCchhhcCCC-CCeEEeeCCcCCCCCCCCch------hhhhhcCCCCCCC----Cc------hhccceeeecCCC
Q 047084 122 NLLKTIPPPLAADRS-TKKARFRSHEVDADSPSPLS------FKDALVHPEQYRS----SE------DAEMEEEWDLEPG 184 (437)
Q Consensus 122 n~~~~ip~~~~~l~~-L~~L~l~~N~l~~~~p~~~~------~~~~~l~~n~l~~----~~------~~~~~~~L~L~~n 184 (437)
|.+..+|..+..+++ |+.|+|++|+++ .+|..+. +..+.++.|++.. .. ....++.|+|++|
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred CccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 778899999999998 999999999999 7887652 5667788888721 11 1224678999999
Q ss_pred CcccCC------CCCCCeEeechHHHhhhcccccceEE------EEecCCCcCHHHHHHHHHhccc--CCCceEEEEcCC
Q 047084 185 DVTIGD------DGTMPTIKFSKRIQDKLIKPWQNSVV------VKLLGRNIGYKVLCNRLKVMWH--QIHDFSVIDLEN 250 (437)
Q Consensus 185 ~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~~l~------~~l~~~~ls~n~l~~~l~~~w~--~~~~l~~l~l~~ 250 (437)
+++..+ ...+..+.++.|.+..++........ .++..++++.|.++ .++..+. ..+.++.+++++
T Consensus 684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence 988433 24677788888877755543322110 03445567777777 4555554 788899999999
Q ss_pred cEEEE
Q 047084 251 NYFLI 255 (437)
Q Consensus 251 N~f~~ 255 (437)
|.+..
T Consensus 763 N~L~~ 767 (876)
T 4ecn_A 763 NCFSS 767 (876)
T ss_dssp SCCSS
T ss_pred CCCCc
Confidence 98763
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=7e-21 Score=182.69 Aligned_cols=99 Identities=28% Similarity=0.371 Sum_probs=49.2
Q ss_pred EEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084 2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l 79 (437)
+|+|++|.++.+|. .|.++++|++|++++|.+..+ |..+.++++|++|++++|.++.+|..+. ++|++|++++|.+
T Consensus 56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l 133 (330)
T 1xku_A 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI 133 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcc
Confidence 45555555555543 345555555555555555433 4445555555555555555555554432 4455555555554
Q ss_pred ccccccccccccccCCccCcEEEeecCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
++.. +..+.++++|++|++++|.
T Consensus 134 ~~~~-----~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 134 TKVR-----KSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CBBC-----HHHHTTCTTCCEEECCSSC
T ss_pred cccC-----HhHhcCCccccEEECCCCc
Confidence 4221 2234455555555555543
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=5.4e-21 Score=191.53 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=72.9
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccCc-ccC-hhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEecee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVK-IIP-KSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~ 76 (437)
++|+|++|.++.+ |..|.++++|++|++++|.+. .++ ..+.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 5788888888766 556788888888888888774 553 5577788888888887766655 55677788888888888
Q ss_pred ecccccccccccccc--ccCCccCcEEEeecCC
Q 047084 77 YNYTAGFAAAKLHEG--FGSLTNLQKLCIIEAD 107 (437)
Q Consensus 77 n~l~~~~~~~~lp~~--~~~l~~L~~L~l~~n~ 107 (437)
|.+++.. |.. ++.+++|++|++++|.
T Consensus 113 n~l~~~~-----~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 113 CNLDGAV-----LSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp SCCBTHH-----HHSSTTTTCTTCCEEECCSSB
T ss_pred CCCCccc-----cCcccccCcccCCEEECCCCc
Confidence 8777432 332 6667777777777765
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=2.9e-21 Score=200.57 Aligned_cols=277 Identities=13% Similarity=0.102 Sum_probs=195.1
Q ss_pred CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccc-hhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP-VEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~n~ 78 (437)
++|++++|.++.++.. |.++++|++|++++|.+..+|..++++++|++|++++|.+..++ ..+.++++|++|++++|.
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 3688899999888664 78899999999999999999988989999999999988877764 468899999999999998
Q ss_pred cccccccccccc-cccCCccCcEEEeecCCh-------HhHhhccchHhc---ccccc-cCCchhhcCCCCCeEEeeCCc
Q 047084 79 YTAGFAAAKLHE-GFGSLTNLQKLCIIEADS-------EALKELMKLRQL---RNLLK-TIPPPLAADRSTKKARFRSHE 146 (437)
Q Consensus 79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~-------~~~~~L~~L~~l---~n~~~-~ip~~~~~l~~L~~L~l~~N~ 146 (437)
+.+.. |. .+..+++|++|++++|.. ..+..+..|+.+ +|.+. ..|..+..+++|++|++++|+
T Consensus 337 ~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 337 KRLEL-----GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp SCCBC-----CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred ccccc-----chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 87543 43 478888999999988872 233444444444 55554 445677888888999999888
Q ss_pred CCCCCCCC-c----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccC---------CCCCCCeEeechHHHhhh
Q 047084 147 VDADSPSP-L----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG---------DDGTMPTIKFSKRIQDKL 207 (437)
Q Consensus 147 l~~~~p~~-~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~---------~~~~lp~l~l~~n~l~~l 207 (437)
+++..|.. + ++..+.+++|.+.. +.....++.|++++|+++.. ....+..+.++.+.+...
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 88655443 2 56667778887721 23344567788888887631 125667777887777665
Q ss_pred cccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCC-hhhHHHh----HHcCceEEcCceEEEe
Q 047084 208 IKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKS-PEDAVYA----LTEGPWVIFGHYLTVQ 282 (437)
Q Consensus 208 ~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~-~~d~~~v----l~~~pw~~~~~~l~l~ 282 (437)
.+.... ...++..++++.|.++...+..+.....+ .+++++|.+....+. ...+... +.++||.+++....+.
T Consensus 492 ~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 569 (606)
T 3t6q_A 492 DQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569 (606)
T ss_dssp CTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred Chhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHH
Confidence 432211 12345556788888888888889888999 999999988743222 1222221 6778888777654444
Q ss_pred ec
Q 047084 283 PW 284 (437)
Q Consensus 283 ~w 284 (437)
.|
T Consensus 570 ~w 571 (606)
T 3t6q_A 570 EW 571 (606)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2e-21 Score=207.54 Aligned_cols=244 Identities=14% Similarity=0.169 Sum_probs=193.3
Q ss_pred CEEEecCCCC-CcCCccccCCCCCcEEEeeccc-Cc--ccChhhhccc-------CCCEEEccCCcccccch--hhcCCc
Q 047084 1 KVLDLEDAPV-DYLPEGVGNLFNLHYLSVKNTK-VK--IIPKSIGNLL-------GLETLDLKNTLVRELPV--EIRNLK 67 (437)
Q Consensus 1 ~~L~L~~n~l-~~lp~~~~~l~~L~~L~L~~n~-l~--~lp~~~~~l~-------~L~~L~l~~~~~~~lp~--~~~~L~ 67 (437)
++|+|++|.+ +.+|..+++|++|++|+|++|+ +. .+|..+++++ +|++|++++|.+..+|. .+++++
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~ 573 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC
Confidence 5899999985 8889999999999999999998 85 6999888887 99999999998889999 899999
Q ss_pred CCcEEeceeeccccccccccccccccCCccCcEEEeecCChH----hHhh----ccchHhcccccccCCchhhcCCC--C
Q 047084 68 RLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE----ALKE----LMKLRQLRNLLKTIPPPLAADRS--T 137 (437)
Q Consensus 68 ~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~----~~~~----L~~L~~l~n~~~~ip~~~~~l~~--L 137 (437)
+|++|++++|+++ .+| .|+.+++|+.|++++|... .+.. |+.|...+|.+..+|..+..++. |
T Consensus 574 ~L~~L~Ls~N~l~------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 574 KLGLLDCVHNKVR------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp TCCEEECTTSCCC------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred CCCEEECCCCCcc------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 9999999999998 568 8999999999999999833 3333 44444447888899988877654 9
Q ss_pred CeEEeeCCcCCCCCCCCc---------hhhhhhcCCCCCCCCc-----hhccceeeecCCCCcccCCCC-----------
Q 047084 138 KKARFRSHEVDADSPSPL---------SFKDALVHPEQYRSSE-----DAEMEEEWDLEPGDVTIGDDG----------- 192 (437)
Q Consensus 138 ~~L~l~~N~l~~~~p~~~---------~~~~~~l~~n~l~~~~-----~~~~~~~L~L~~n~l~~~~~~----------- 192 (437)
+.|+|++|++++.+|... ++..+.++.|++.... ....++.|+|++|+++..+..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 999999999998766433 5677888999984322 234568899999999844331
Q ss_pred --CCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcE
Q 047084 193 --TMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNY 252 (437)
Q Consensus 193 --~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~ 252 (437)
.+..+.++.|.+..++..+......++..++++.|.+.+ ++..+.....++.+++++|.
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 577788888888866554321123345566788888877 67777788999999998754
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=7e-21 Score=192.04 Aligned_cols=249 Identities=17% Similarity=0.174 Sum_probs=191.7
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccc-hhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELP-VEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+ |..|.++++|++|+|++|.+..+|.. +.++++|++|++++|.+..++ ..|.++++|++|++++|
T Consensus 59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 5899999999888 66899999999999999999988864 788999999999988887764 46999999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCC-chhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIP-PPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip-~~~~~l~~L~~L~l~~N~l~ 148 (437)
.+++.. |..|..+++|+.|++++|. ...+..+..|+.+ +|.+..++ ..+..+++|++|++++|.+.
T Consensus 139 ~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 139 DLVYIS-----HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp TCCEEC-----TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ccceeC-----hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 998543 6679999999999999997 2345555555554 56665555 47888999999999999887
Q ss_pred CCCCCCc----hhhhhhcCCCCCCCC-----chhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccc
Q 047084 149 ADSPSPL----SFKDALVHPEQYRSS-----EDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQN 213 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l~~~-----~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~ 213 (437)
+.+|... ++..+.++.|.+... .....++.|+|++|+++.... ..+..+.++.|.+..+.+....
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 6666543 566777888887332 223456889999999874433 4566778888777665432211
Q ss_pred eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084 214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI 255 (437)
Q Consensus 214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~ 255 (437)
...++..++++.|.++...+..+.....++.+++++|.+..
T Consensus 294 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 294 -GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp -TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred -CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 12234456788888887777788888999999999999874
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.2e-20 Score=181.30 Aligned_cols=198 Identities=18% Similarity=0.179 Sum_probs=113.3
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~ 78 (437)
++|++++|.++.+++ .|.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+|..+. ++|++|++++|.
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~ 134 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR 134 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc
Confidence 456666666666643 566667777777777766544 4556666777777777666666666544 566777777666
Q ss_pred cccccccccccccccCCccCcEEEeecCChHh-------Hh--hccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-------LK--ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-------~~--~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
+++.. +..|..+++|+.|++++|.... +. +|+.|...+|.+..+|..+. ++|++|++++|.+++
T Consensus 135 i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 135 IRKVP-----KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp CCCCC-----SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC
T ss_pred cCccC-----HhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc
Confidence 66321 2346777777777777775321 11 23333333555666665443 567777777777764
Q ss_pred CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCC-----CCCCeEeechHHHhhh
Q 047084 150 DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQDKL 207 (437)
Q Consensus 150 ~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~~l 207 (437)
..|..+ .+..+.+++|++.. +.....++.|+|++|+++..+. ..+..+.++.|.+..+
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 443333 44556666666621 2223345667777777663322 3344555555555444
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=6.2e-20 Score=174.82 Aligned_cols=182 Identities=17% Similarity=0.267 Sum_probs=146.0
Q ss_pred CEEEecC-CCC-CcCCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEecee
Q 047084 1 KVLDLED-APV-DYLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~-n~l-~~lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~ 76 (437)
++|++++ |.+ +.+|..|.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 5899995 887 578999999999999999999996 89999999999999999988776 7899999999999999999
Q ss_pred eccccccccccccccccCCc-cCcEEEeecCC-----hHhHhhcc--chHhccccc-ccCCchhhcCCCCCeEEeeCCcC
Q 047084 77 YNYTAGFAAAKLHEGFGSLT-NLQKLCIIEAD-----SEALKELM--KLRQLRNLL-KTIPPPLAADRSTKKARFRSHEV 147 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~-~L~~L~l~~n~-----~~~~~~L~--~L~~l~n~~-~~ip~~~~~l~~L~~L~l~~N~l 147 (437)
|++++. +|..++.+. +|+.|++++|. +..+..+. .|...+|.+ +.+|..+..+++|+.|++++|++
T Consensus 159 N~l~~~-----~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 159 NRISGA-----IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp SCCEEE-----CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred CcccCc-----CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 999864 488899998 99999999997 34454443 333335555 45667888999999999999999
Q ss_pred CCCCCCC---chhhhhhcCCCCCC--C---CchhccceeeecCCCCcc
Q 047084 148 DADSPSP---LSFKDALVHPEQYR--S---SEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 148 ~~~~p~~---~~~~~~~l~~n~l~--~---~~~~~~~~~L~L~~n~l~ 187 (437)
++.+|.. .++..+.++.|++. . +.....++.|+|++|+++
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 8665542 25667778888872 1 223344677888888887
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=3.5e-20 Score=188.96 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=155.1
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~ 78 (437)
++|+|++|.+..+++ .|.++++|++|+|++|++..+ |..++++++|++|++++|.++.+|.. .+++|++|++++|.
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence 467777787777753 677788888888888888655 56777888888888887777778776 78888888888888
Q ss_pred cccccccccccccccCCccCcEEEeecCCh--HhHhhccch--Hhc---cccc---ccCCchhhc---------------
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS--EALKELMKL--RQL---RNLL---KTIPPPLAA--------------- 133 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~--~~~~~L~~L--~~l---~n~~---~~ip~~~~~--------------- 133 (437)
+++. .+|..|+.+++|++|++++|.. ..+..+..| +.+ .|.+ +..|..+..
T Consensus 102 l~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 102 FDAL----PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CSSC----CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred cccc----cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 8743 2477888899999999988873 233333333 222 2222 223333322
Q ss_pred --------------------------------------------------------------------CCCCCeEEeeCC
Q 047084 134 --------------------------------------------------------------------DRSTKKARFRSH 145 (437)
Q Consensus 134 --------------------------------------------------------------------l~~L~~L~l~~N 145 (437)
.++|++|++++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 126777777888
Q ss_pred cCCCCCCCCc-----------------------------------hhhhhhcCCCCCCCC---chhccceeeecCCCCcc
Q 047084 146 EVDADSPSPL-----------------------------------SFKDALVHPEQYRSS---EDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 146 ~l~~~~p~~~-----------------------------------~~~~~~l~~n~l~~~---~~~~~~~~L~L~~n~l~ 187 (437)
+++|.+|..+ ++..+.+++|.+... .....++.|++++|+++
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred cccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC
Confidence 8777777654 122333444554211 23445677888888887
Q ss_pred cCCC------CCCCeEeechHHHhhhcc-cccceEEEEecCCCcCHHHHHH-HHHhcccCCCceEEEEcCCcEEE
Q 047084 188 IGDD------GTMPTIKFSKRIQDKLIK-PWQNSVVVKLLGRNIGYKVLCN-RLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 188 ~~~~------~~lp~l~l~~n~l~~l~~-~~~~~l~~~l~~~~ls~n~l~~-~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
...+ ..+..+.++.|.+..+.. +.......++..++++.|.+.. .....+...+.++.+++++|.+.
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 4222 455667777776664321 0000112234455677777766 33334666777888888888764
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=8.2e-21 Score=184.00 Aligned_cols=232 Identities=15% Similarity=0.169 Sum_probs=133.3
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~ 80 (437)
.++++|.++++|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.++.+++ .|.++++|++|++++|+++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4566667777776554 367777777777765554 56667777777777666666543 4667777777777777766
Q ss_pred ccccccccccc-ccCCccCcEEEeecCChH------hHhhccchHhc---cc-ccccCC-chhhcCCCCCeEEeeCCcCC
Q 047084 81 AGFAAAKLHEG-FGSLTNLQKLCIIEADSE------ALKELMKLRQL---RN-LLKTIP-PPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 81 ~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~------~~~~L~~L~~l---~n-~~~~ip-~~~~~l~~L~~L~l~~N~l~ 148 (437)
+ +|.. ++++++|++|++++|+.. .+..+..|+.+ +| .+..++ ..+..+++|++|++++|+++
T Consensus 114 ~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 114 N------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp S------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred c------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 3 3433 666777777777776522 23333333333 33 354543 56777888888888888887
Q ss_pred CCCCCCc----hhhhhhcCCCCCCCCc-----hhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEe
Q 047084 149 ADSPSPL----SFKDALVHPEQYRSSE-----DAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKL 219 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l~~~~-----~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l 219 (437)
+..|..+ ++..+.++.|++.... ....++.|++++|+++......++.... . .......+
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~--------~---~~l~~l~L 256 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET--------N---SLIKKFTF 256 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C--------C---CCCCEEEE
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc--------c---chhhcccc
Confidence 6555544 4556667777763211 2345688999999987433222211100 0 00011233
Q ss_pred cCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 220 LGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 220 ~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
....++.+.+.. ++..+...+.++.+++++|.+.
T Consensus 257 ~~~~l~~~~l~~-l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 257 RNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp ESCBCCHHHHHH-HHHHHHTCTTCCEEECCSSCCC
T ss_pred ccccccCcchhh-hHHHHhcccCCCEEECCCCCCC
Confidence 444555555543 3444555556666666666554
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=4.4e-20 Score=191.72 Aligned_cols=253 Identities=20% Similarity=0.176 Sum_probs=195.3
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCccc-ccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVR-ELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~-~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|++++|.++++|..+.++++|++|++++|.+..+ |..+.++++|++|++++|.+. .+|.. +.++++|++|++++|
T Consensus 281 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp SEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred CEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 589999999999999999999999999999999765 568999999999999976654 77775 899999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccC-C-chhhcCCCCCeEEeeCCcC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTI-P-PPLAADRSTKKARFRSHEV 147 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~i-p-~~~~~l~~L~~L~l~~N~l 147 (437)
.+++.. ..|..++.+++|++|++++|. +..+..+..|+.+ +|.+... | ..+..+++|++|++++|.+
T Consensus 361 ~l~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 361 DIETSD---CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CCCEEE---ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred cccccc---CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 998532 235678999999999999997 3444444544444 5665443 4 3488999999999999999
Q ss_pred CCCCCCCc----hhhhhhcCCCCCCC--------CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcc
Q 047084 148 DADSPSPL----SFKDALVHPEQYRS--------SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIK 209 (437)
Q Consensus 148 ~~~~p~~~----~~~~~~l~~n~l~~--------~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~ 209 (437)
++..|..+ ++..+.+++|.+.. +.....++.|++++|+++...+ ..+..+.++.|.+....+
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 97766654 56778889998721 2334556889999999985543 567778899888876654
Q ss_pred cccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeC
Q 047084 210 PWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLK 258 (437)
Q Consensus 210 ~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~ 258 (437)
.+... ...+ .++++.|.++...+..+.....++.+++++|.+....+
T Consensus 518 ~~l~~-l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 518 EALSH-LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGTT-CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hHhCc-cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 33221 1223 45678888887777777778889999999999985443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=5.3e-20 Score=189.46 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=85.3
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~ 78 (437)
++|+|++|.++.+|+ .|.++++|++|+|++|.|..+ |..|.++++|++|++++|.++.+|.. .+++|++|++++|+
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC
Confidence 578899999888864 788899999999999998765 56788899999999998888888887 88999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
+++. .+|..|+++++|++|++++|.
T Consensus 133 l~~l----~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 133 FDVL----PVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSBC----CCCGGGGGCTTCCEEEEECSB
T ss_pred cccc----CchHhhcccCcccEEecCCCc
Confidence 8843 235778999999999999887
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.4e-19 Score=173.59 Aligned_cols=178 Identities=19% Similarity=0.246 Sum_probs=141.4
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~ 78 (437)
++++++++.++.+|..+. +.|++|++++|.++.+++ .+.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus 34 ~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred eEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 578999999999998765 689999999999987775 789999999999998888877 6779999999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccc---cCCchhhcCCCCCeEEeeCCcC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLK---TIPPPLAADRSTKKARFRSHEV 147 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~---~ip~~~~~l~~L~~L~l~~N~l 147 (437)
++ .+|..+. ++|++|++++|. +..+..+..|+.+ +|.+. ..+..+..+++|++|++++|.+
T Consensus 112 l~------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 112 LK------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CS------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CC------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 98 5576654 799999999997 3345555555555 55553 4567889999999999999999
Q ss_pred CCCCCCCc--hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccC
Q 047084 148 DADSPSPL--SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG 189 (437)
Q Consensus 148 ~~~~p~~~--~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~ 189 (437)
+ .+|..+ ++..+.+++|++.. +.....++.|+|++|+++..
T Consensus 184 ~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 184 T-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp C-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred c-cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 9 566543 56677788888722 22344568899999988733
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=177.22 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=139.9
Q ss_pred CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|+++.++ ..|.++++|++|+|++|.|..++ ..|.++++|++|++++|.++.+|.. |..+++|++|++++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 57899999998875 47888999999999999987666 5688899999999998888888874 889999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCC------hHhHhhccchHh---cccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKELMKLRQ---LRNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~---l~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.+++.. +..|..+++|++|++++|+ ...+.++.+|+. .+|.+..+|. +..+++|++|+|++|+|+
T Consensus 147 ~i~~~~-----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 147 PIESIP-----SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCCEEC-----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCC
T ss_pred cccccC-----HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccC
Confidence 988322 3458889999999998854 223444444444 4677788874 778889999999999998
Q ss_pred CCCCCCc----hhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCC
Q 047084 149 ADSPSPL----SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGD 190 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~ 190 (437)
+..|..+ ++..+.++.|++. .+.....++.|+|++|+++...
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 6555554 5667778888872 2334456788899999887443
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.4e-19 Score=171.64 Aligned_cols=185 Identities=21% Similarity=0.191 Sum_probs=141.4
Q ss_pred CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCccc---ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEecee
Q 047084 1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKII---PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~ 76 (437)
++|+|++|.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC
Confidence 5789999999888875 68899999999999988644 6778889999999999888888988899999999999999
Q ss_pred eccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---cccccc--CCchhhcCCCCCeEEeeCCc
Q 047084 77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKT--IPPPLAADRSTKKARFRSHE 146 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~--ip~~~~~l~~L~~L~l~~N~ 146 (437)
|.+++.. .+..+..+++|++|++++|. +..+..+..|+.+ +|.+.. +|..+..+++|++|++++|+
T Consensus 111 n~l~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 111 SNLKQMS----EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp SEEESST----TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred Ccccccc----cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 9988432 01468889999999999887 2334444444444 566643 78888899999999999999
Q ss_pred CCCCCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccC
Q 047084 147 VDADSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG 189 (437)
Q Consensus 147 l~~~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~ 189 (437)
+++..|..+ ++..+.+++|++.. +.....++.|++++|+++..
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 986555544 56677788888722 22234567889999988743
No 24
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=2.9e-19 Score=170.15 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=81.0
Q ss_pred CEEEecCCCCC-cCCccc--cCCCCCcEEEeecccCcccChhhhcc-----cCCCEEEccCCcccccc-hhhcCCcCCcE
Q 047084 1 KVLDLEDAPVD-YLPEGV--GNLFNLHYLSVKNTKVKIIPKSIGNL-----LGLETLDLKNTLVRELP-VEIRNLKRLRY 71 (437)
Q Consensus 1 ~~L~L~~n~l~-~lp~~~--~~l~~L~~L~L~~n~l~~lp~~~~~l-----~~L~~L~l~~~~~~~lp-~~~~~L~~L~~ 71 (437)
++|+|++|.++ .+|..+ .++++|++|+|++|++..+|..++.+ ++|++|++++|.++.++ ..++++++|++
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 35566666653 445544 55666666666666665445555555 56666666655555554 34556666666
Q ss_pred Eeceeeccccccccccccccc--cCCccCcEEEeecCChHhH-----------hhccchHhcccccccCC--chhhcCCC
Q 047084 72 LMVYQYNYTAGFAAAKLHEGF--GSLTNLQKLCIIEADSEAL-----------KELMKLRQLRNLLKTIP--PPLAADRS 136 (437)
Q Consensus 72 L~l~~n~l~~~~~~~~lp~~~--~~l~~L~~L~l~~n~~~~~-----------~~L~~L~~l~n~~~~ip--~~~~~l~~ 136 (437)
|++++|++.+.. .+|..+ +.+++|++|++++|....+ ++|+.|...+|.+...+ ..+..+++
T Consensus 178 L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 178 LDLSDNPELGER---GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp EECCSCTTCHHH---HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred EECCCCCcCcch---HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 666666554321 123233 5556666666666652211 12222222234443322 23334455
Q ss_pred CCeEEeeCCcCCCCCCCCc--hhhhhhcCCCCC
Q 047084 137 TKKARFRSHEVDADSPSPL--SFKDALVHPEQY 167 (437)
Q Consensus 137 L~~L~l~~N~l~~~~p~~~--~~~~~~l~~n~l 167 (437)
|++|+|++|+|+ .+|..+ ++..+.+++|++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRL 286 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCCSEEEEEECCSSCC
T ss_pred CCEEECCCCccC-hhhhhccCCceEEECCCCCC
Confidence 555555555555 444433 333444444444
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.9e-20 Score=194.37 Aligned_cols=159 Identities=9% Similarity=0.021 Sum_probs=83.4
Q ss_pred CCchhhcCCCCCeEEeeCCcCCCCCC-CCc----hhhhhhcCCCCC-----CCCchhccceeeecCCCCccc-------C
Q 047084 127 IPPPLAADRSTKKARFRSHEVDADSP-SPL----SFKDALVHPEQY-----RSSEDAEMEEEWDLEPGDVTI-------G 189 (437)
Q Consensus 127 ip~~~~~l~~L~~L~l~~N~l~~~~p-~~~----~~~~~~l~~n~l-----~~~~~~~~~~~L~L~~n~l~~-------~ 189 (437)
+|..+..+++|++|++++|++++..| ..+ ++..+.++.|.+ ..+.....++.|++++|+++. .
T Consensus 391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence 33334444445555555555443333 111 334444555554 112223345666666666653 1
Q ss_pred CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHH----H
Q 047084 190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAV----Y 265 (437)
Q Consensus 190 ~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~----~ 265 (437)
....+..+.++.|.+....+.+.. -..++..++++.|.+++..+..+.....++.+++++|.+...-.....+. .
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcE
Confidence 114455566666655554332211 12234455677777777777778888888888888887763322222221 1
Q ss_pred -hHHcCceEEcCceEEEeecCC
Q 047084 266 -ALTEGPWVIFGHYLTVQPWTP 286 (437)
Q Consensus 266 -vl~~~pw~~~~~~l~l~~w~~ 286 (437)
.+.++||.+++....+..|..
T Consensus 550 l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 550 FNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp EECCSCCCCCSSTTHHHHTTTT
T ss_pred EEccCCCcccCCccHHHHHHHH
Confidence 256777777766555555543
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=179.57 Aligned_cols=226 Identities=16% Similarity=0.225 Sum_probs=161.3
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l 79 (437)
.++.+++.++++|..+. .+++.|+|++|+|..++ ..|.++++|++|+|++|.+..++. .|.++++|++|+|++|++
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 56778888999998775 68999999999998665 678999999999999998888875 599999999999999999
Q ss_pred ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---c-cccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---R-NLLKTIPP-PLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~-n~~~~ip~-~~~~l~~L~~L~l~~N~l~~ 149 (437)
++.. +..|..+++|++|++++|.. ..+..+..|+.+ + +.++.++. .+.++++|++|+|++|+++
T Consensus 125 ~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 125 TTIP-----NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCC-----TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CeeC-----HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 8432 34689999999999999973 234445555544 3 56677775 6789999999999999999
Q ss_pred CCCCCc---hhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084 150 DSPSPL---SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG 221 (437)
Q Consensus 150 ~~p~~~---~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~ 221 (437)
.+|... ++..+.+++|++. .+.....++.|+|++|+++......+.. ..++..
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------l~~L~~ 259 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN-------------------LQSLVE 259 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT-------------------CTTCCE
T ss_pred cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC-------------------CCCCCE
Confidence 566422 4556667777762 2233444566777777776332211100 012223
Q ss_pred CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
++++.|.++...+..+.....++.+++++|.|.
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 345555555555556667777888888766554
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=5e-19 Score=177.29 Aligned_cols=183 Identities=18% Similarity=0.246 Sum_probs=132.8
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+ |..|.++++|++|+|++|.|..++ ..|.++++|++|+|++|.+..+|.. |.++++|++|++++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 5788888888777 446788888888998888887555 6678888888888888888888775 788888888988888
Q ss_pred cccccccccccc-ccccCCccCcEEEeecCC------hHhHh---hccchHhcccccccCCchhhcCCCCCeEEeeCCcC
Q 047084 78 NYTAGFAAAKLH-EGFGSLTNLQKLCIIEAD------SEALK---ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEV 147 (437)
Q Consensus 78 ~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~------~~~~~---~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l 147 (437)
.++ .+| ..|..+++|+.|++++|+ ...+. +|+.|...+|.+..+| .+..+++|++|+|++|++
T Consensus 158 ~l~------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 158 PIE------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCC------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred Ccc------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 887 334 357888888888888754 22333 3444444467777776 467788888888888888
Q ss_pred CCCCCCCc----hhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCC
Q 047084 148 DADSPSPL----SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGD 190 (437)
Q Consensus 148 ~~~~p~~~----~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~ 190 (437)
++..|..+ ++..+.+++|++. .+.....++.|+|++|+++...
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 86545443 5566777788772 1233445677888888887443
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=6.7e-20 Score=173.88 Aligned_cols=229 Identities=12% Similarity=0.105 Sum_probs=167.4
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCccccc---chhhcCCcCCcEEecee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVREL---PVEIRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~l---p~~~~~L~~L~~L~l~~ 76 (437)
+.++.+++.++++|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 367899999999998764 6899999999999988865 68899999999998888765 67788999999999999
Q ss_pred eccccccccccccccccCCccCcEEEeecCCh------HhHhhccchHhc---ccccc-cCCchhhcCCCCCeEEeeCCc
Q 047084 77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS------EALKELMKLRQL---RNLLK-TIPPPLAADRSTKKARFRSHE 146 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l---~n~~~-~ip~~~~~l~~L~~L~l~~N~ 146 (437)
|.++ .+|..+..+++|++|++++|.. ..+..+..|+.+ +|.+. ..|..+..+++|++|++++|.
T Consensus 88 n~i~------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 88 NGVI------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CSEE------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred Cccc------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 9988 5688899999999999999962 234444444444 55554 445678889999999999999
Q ss_pred CCC-CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEE
Q 047084 147 VDA-DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVV 216 (437)
Q Consensus 147 l~~-~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~ 216 (437)
+++ .+|..+ ++..+.+++|++.. +.....++.|+|++|+++..... .+.. .
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~---------l 222 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF----------PYKC---------L 222 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG----------GGTT---------C
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh----------hccC---------c
Confidence 985 355544 56667778887721 22334567788888887632210 0000 1
Q ss_pred EEecCCCcCHHHHHHHHHhcccCC-CceEEEEcCCcEEEEE
Q 047084 217 VKLLGRNIGYKVLCNRLKVMWHQI-HDFSVIDLENNYFLIR 256 (437)
Q Consensus 217 ~~l~~~~ls~n~l~~~l~~~w~~~-~~l~~l~l~~N~f~~~ 256 (437)
.++..++++.|.+.+..+..+... ..++.+++++|.|...
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 123334566666665555566655 4899999999998743
No 29
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.4e-19 Score=187.18 Aligned_cols=233 Identities=18% Similarity=0.168 Sum_probs=151.9
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.++.+|..+. ++|++|++++|.|..+|. .+++|++|++++|.++.+|. .+++|++|++++|.++
T Consensus 43 ~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred cEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence 467777777777777665 677777777777777765 46677777777777777776 5667777777777666
Q ss_pred cccc--------------cccccccccCCccCcEEEeecCChHh----HhhccchHhcccccccCCchhhcCCCCCeEEe
Q 047084 81 AGFA--------------AAKLHEGFGSLTNLQKLCIIEADSEA----LKELMKLRQLRNLLKTIPPPLAADRSTKKARF 142 (437)
Q Consensus 81 ~~~~--------------~~~lp~~~~~l~~L~~L~l~~n~~~~----~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l 142 (437)
+... +..+|.. +++|++|++++|.... +.+|+.|...+|.+..+| ..+++|+.|++
T Consensus 115 ~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~L 188 (622)
T 3g06_A 115 HLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSV 188 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEEC
T ss_pred CCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEEC
Confidence 3210 0011211 2455555555554222 233444444455555555 33478889999
Q ss_pred eCCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCC--CCCCCeEeechHHHhhhcccccceEEEE
Q 047084 143 RSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGD--DGTMPTIKFSKRIQDKLIKPWQNSVVVK 218 (437)
Q Consensus 143 ~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~--~~~lp~l~l~~n~l~~l~~~~~~~l~~~ 218 (437)
++|.|++ +|..+ ++..+.+++|.+.. ......++.|+|++|+++..+ ...+..+.++.|.+..++.. ..+
T Consensus 189 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~-----~~~ 262 (622)
T 3g06_A 189 SDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML-----PSG 262 (622)
T ss_dssp CSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC-----CTT
T ss_pred CCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcc-----ccc
Confidence 9999884 55443 56667778888732 222345788999999998533 25677788888887766551 223
Q ss_pred ecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 219 LLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 219 l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
+..+++++|.++ .++..+...+.++.+++++|.+.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 445667788877 45677888899999999999876
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.6e-19 Score=166.36 Aligned_cols=101 Identities=23% Similarity=0.254 Sum_probs=45.9
Q ss_pred EEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCc-cccc-chhhcCCcCCcEEeceee
Q 047084 2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTL-VREL-PVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~-~~~l-p~~~~~L~~L~~L~l~~n 77 (437)
+|++++|.++.+|. .|.++++|++|++++|.+..+ |..+.++++|++|++++|. ++.+ |..+..+++|++|++++|
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 34444444444432 344444555555555544333 3344444555555554432 4444 223444555555555555
Q ss_pred ccccccccccccccccCCccCcEEEeecCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
.+++.. |..+..+++|++|++++|.
T Consensus 116 ~l~~~~-----~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 116 GLQELG-----PGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp CCCCCC-----TTTTTTCTTCCEEECCSSC
T ss_pred cCCEEC-----HhHhhCCcCCCEEECCCCc
Confidence 444221 3334444455555554443
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.5e-19 Score=179.51 Aligned_cols=227 Identities=15% Similarity=0.221 Sum_probs=164.8
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l 79 (437)
.++.+++.++++|..+. ++|++|+|++|.|..+ |..|.++++|++|++++|.+..++. .|.++++|++|+|++|++
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 56778888999998765 6899999999999765 5779999999999999888888874 599999999999999999
Q ss_pred ccccccccccccccCCccCcEEEeecCChH-----hHhhccchHhc---c-cccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKELMKLRQL---R-NLLKTIPP-PLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~l---~-n~~~~ip~-~~~~l~~L~~L~l~~N~l~~ 149 (437)
++.. +..|..+++|++|++++|... .+..+..|+.+ + +.++.+|. .+..+++|++|+|++|++++
T Consensus 136 ~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 136 TVIP-----SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SBCC-----TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CccC-----hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 8432 345899999999999999832 34445555544 3 56777775 57899999999999999994
Q ss_pred CCCCC---chhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084 150 DSPSP---LSFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG 221 (437)
Q Consensus 150 ~~p~~---~~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~ 221 (437)
+|.. .++..+.+++|++.. +.....++.|+|++|+++......+.. ..++..
T Consensus 211 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------l~~L~~ 270 (452)
T 3zyi_A 211 -MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG-------------------LASLVE 270 (452)
T ss_dssp -CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT-------------------CTTCCE
T ss_pred -cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC-------------------CCCCCE
Confidence 5542 255667777887722 223345677888888876332211110 012233
Q ss_pred CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084 222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI 255 (437)
Q Consensus 222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~ 255 (437)
++++.|.++...+..+.....++.+++++|.|..
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 3455565555555667777888889988887663
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=7.8e-20 Score=179.52 Aligned_cols=243 Identities=16% Similarity=0.213 Sum_probs=126.3
Q ss_pred CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
|+|++++|.++.+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.+|+. ++++++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 4567777777777664 466777777777777776554 3666777777777776666666543 677777777777777
Q ss_pred cccccccccccccc-ccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEG-FGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.++ .+|.. |+.+++|++|++++|. +..+..++.|+.+ +|.+..++ +..+++|+.|++++|.++
T Consensus 128 ~l~------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 128 DLS------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCC------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred ccC------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence 776 34544 4667777777777765 2223333333333 45555443 445566666666666665
Q ss_pred CCCCCCchhhhhhcCCCCCCCC--chhccceeeecCCCCcccCC----CCCCCeEeechHHHhhhcccccceEEEEecCC
Q 047084 149 ADSPSPLSFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVTIGD----DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGR 222 (437)
Q Consensus 149 ~~~p~~~~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~~~~----~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~ 222 (437)
+ ++...++..+.+++|.+... .....++.|++++|+++... ...+..+.++.|.+....+.... ...++..+
T Consensus 200 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L 277 (390)
T 3o6n_A 200 T-LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERL 277 (390)
T ss_dssp E-EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEE
T ss_pred c-cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEE
Confidence 2 22223444444555544111 11122344445554444111 13334444444443333211100 01122233
Q ss_pred CcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 223 NIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 223 ~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
+++.|.++. ++..+...+.++.+++++|.+.
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence 344444332 2223344556666666666554
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.2e-19 Score=183.05 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=69.2
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc--cchhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE--LPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~--lp~~~~~L~~L~~L~l~~n 77 (437)
++|+|++|+++.+ |..|.++++|++|+|++|+|..+|.. .+++|++|++++|.+.. +|..++++++|++|++++|
T Consensus 48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 48 RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred cEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 6899999999888 66889999999999999999888876 89999999999888775 5678999999999999999
Q ss_pred cccc
Q 047084 78 NYTA 81 (437)
Q Consensus 78 ~l~~ 81 (437)
.+++
T Consensus 126 ~l~~ 129 (520)
T 2z7x_B 126 HLEK 129 (520)
T ss_dssp SCCG
T ss_pred ccch
Confidence 8863
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.6e-19 Score=180.87 Aligned_cols=246 Identities=17% Similarity=0.181 Sum_probs=173.8
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCccc-ccch-hhcCCcCCcEEeceeec
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVR-ELPV-EIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~-~lp~-~~~~L~~L~~L~l~~n~ 78 (437)
.++.+++.++.+|. + .++|++|+|++|.+..+ |..+.++++|++|++++|.+. .+++ .|.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 57788889999997 3 37899999999999765 678999999999999977664 6654 59999999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCChHh-------HhhccchHhc---ccccccC-Cch-hhcCCCCCeEEeeCCc
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-------LKELMKLRQL---RNLLKTI-PPP-LAADRSTKKARFRSHE 146 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-------~~~L~~L~~l---~n~~~~i-p~~-~~~l~~L~~L~l~~N~ 146 (437)
+++.. |..|+++++|++|++++|.... +..+..|+.+ +|.+..+ |.. +..+++|++|++++|+
T Consensus 91 l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 91 FLQLE-----TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCEEC-----TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cCccC-----hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 98543 7789999999999999998432 4444555544 6666665 555 7899999999999999
Q ss_pred CCCCCCCCch--------------------------------------hhhhhcCCCCCCCCc-----------------
Q 047084 147 VDADSPSPLS--------------------------------------FKDALVHPEQYRSSE----------------- 171 (437)
Q Consensus 147 l~~~~p~~~~--------------------------------------~~~~~l~~n~l~~~~----------------- 171 (437)
+++..|..+. +..+.+++|.+....
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 9977665442 233334444331000
Q ss_pred ---------------------------hhccceeeecCCCCcccCC------CCCCCeEeechHHHhhhcccccceEEEE
Q 047084 172 ---------------------------DAEMEEEWDLEPGDVTIGD------DGTMPTIKFSKRIQDKLIKPWQNSVVVK 218 (437)
Q Consensus 172 ---------------------------~~~~~~~L~L~~n~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~~l~~~ 218 (437)
....++.|++++|+++... ...+..+.++.|.+....+..... ..+
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~ 324 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTH 324 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTT
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-ccc
Confidence 0012445666666665222 245666777777766554322111 123
Q ss_pred ecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE
Q 047084 219 LLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR 256 (437)
Q Consensus 219 l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~ 256 (437)
+..++++.|.+....+..+.....++.+++++|.+...
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence 44566777777766677788888888888888887654
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=2.5e-19 Score=172.08 Aligned_cols=222 Identities=14% Similarity=0.210 Sum_probs=144.8
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~ 78 (437)
++++++++.++.+|..+. ++|++|++++|.+..++ ..+.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus 36 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred CEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 467888888888887764 58888999988887664 4788888899999987777776 5568888899999998888
Q ss_pred cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccc---cCCchhhcCCCCCeEEeeCCcC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLK---TIPPPLAADRSTKKARFRSHEV 147 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~---~ip~~~~~l~~L~~L~l~~N~l 147 (437)
++ .+|..+. ++|++|++++|.. ..+..+..|+.+ +|.+. ..|..+..+ +|++|++++|++
T Consensus 114 l~------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 114 LV------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CC------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CC------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 87 4566554 7888888888862 234444444444 45443 345556666 788888888888
Q ss_pred CCCCCCCc--hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEec
Q 047084 148 DADSPSPL--SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLL 220 (437)
Q Consensus 148 ~~~~p~~~--~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~ 220 (437)
++ +|..+ ++..+.+++|.+.. +.....++.|+|++|+++......+ .. ..++.
T Consensus 185 ~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~----------~~---------l~~L~ 244 (332)
T 2ft3_A 185 TG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL----------SF---------LPTLR 244 (332)
T ss_dssp SS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG----------GG---------CTTCC
T ss_pred Cc-cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh----------hC---------CCCCC
Confidence 73 55543 55666777777622 2233455778888887763322100 00 01122
Q ss_pred CCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 221 GRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 221 ~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
.++++.|.++ .++..+...+.++.+++++|.+.
T Consensus 245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 2334444443 23444556677777777777665
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=8.3e-20 Score=189.32 Aligned_cols=139 Identities=17% Similarity=0.295 Sum_probs=75.6
Q ss_pred EEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 2 VLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
+|++++|.++.+|+. +.++++|++|+|++|.+..++ ..|+++++|++|++++|.++.+|+. |+++++|++|+|++|.
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC
Confidence 456666666666554 355666666666666665443 3566666666666665555555543 4666666666666666
Q ss_pred ccccccccccccc-ccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 79 YTAGFAAAKLHEG-FGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 79 l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
++ .+|.. |+.+++|++|++++|. +..+..+..|+.+ +|.+..++ +..+++|+.|++++|.++
T Consensus 135 l~------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 135 LS------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CC------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred CC------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence 65 23333 4566666666666664 2223333333333 44444443 344455555555555554
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=3.6e-19 Score=171.79 Aligned_cols=137 Identities=20% Similarity=0.311 Sum_probs=84.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.+..+|. +..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+.++++|++|++++|.++
T Consensus 47 ~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 47 TKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp SEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC
T ss_pred cEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc
Confidence 467777777777753 6777777777777777776665 777777777777777777665 4777777777777777776
Q ss_pred cccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
+. +. +..+++|+.|++++|. +..+..+..|+.+ ++.+..++. +..+++|++|++++|.++
T Consensus 124 ~~------~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 124 DI------SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CC------GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred Cc------hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence 32 33 5666666666666663 1222222222222 333333333 445555555555555554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=7.6e-20 Score=179.59 Aligned_cols=227 Identities=16% Similarity=0.158 Sum_probs=102.0
Q ss_pred CCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccccccccccccccccCCcc
Q 047084 20 LFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTN 97 (437)
Q Consensus 20 l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~ 97 (437)
+.+|+.|++++|.++.+|+. +..+++|++|++++|.+..++. .|..+++|++|++++|.+++.. |..|+.+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-----PHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-----HHHhcCCCC
Confidence 44555555555555555543 3445555555555555555443 3555555555555555555321 333555555
Q ss_pred CcEEEeecCChH-----hHhhccchHhc---ccccccCC-chhhcCCCCCeEEeeCCcCCCCCCCCc-hhhhhhcCCCCC
Q 047084 98 LQKLCIIEADSE-----ALKELMKLRQL---RNLLKTIP-PPLAADRSTKKARFRSHEVDADSPSPL-SFKDALVHPEQY 167 (437)
Q Consensus 98 L~~L~l~~n~~~-----~~~~L~~L~~l---~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~l~~n~l 167 (437)
|++|++++|... .+..+..|+.+ +|.+..++ ..+..+++|++|++++|++++.-...+ ++..+.++.|.+
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence 555555555411 11222222222 34443333 334555555555555555553211111 233344445544
Q ss_pred CCCchhccceeeecCCCCcccCCC---CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceE
Q 047084 168 RSSEDAEMEEEWDLEPGDVTIGDD---GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFS 244 (437)
Q Consensus 168 ~~~~~~~~~~~L~L~~n~l~~~~~---~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~ 244 (437)
........++.|++++|+++.... ..+..+.++.+.+....... ...++..++++.|.+.+..+..+...+.++
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHc---CCCCccEEECCCCcCCCcChhHccccccCC
Confidence 333333334555555555542211 23444444444443321100 011223334444544444444455555555
Q ss_pred EEEcCCcEEE
Q 047084 245 VIDLENNYFL 254 (437)
Q Consensus 245 ~l~l~~N~f~ 254 (437)
.+++++|.+.
T Consensus 276 ~L~L~~n~l~ 285 (390)
T 3o6n_A 276 RLYISNNRLV 285 (390)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCcCc
Confidence 5555555543
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=3.7e-18 Score=158.99 Aligned_cols=180 Identities=19% Similarity=0.239 Sum_probs=125.2
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
++++++++.++.+|..+. .+|+.|++++|.+..+|+ .+.++++|++|++++|.++.+|.. |.++++|++|++++|.
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 468889999988887665 578999999999887764 688899999999998888888876 5789999999999998
Q ss_pred cccccccccccccccCCccCcEEEeecCCh-----HhHhhcc---chHhcccccccCCch-hhcCCCCCeEEeeCCcCCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELM---KLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~---~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~ 149 (437)
+++.. +..|..+++|++|++++|.. ..+..+. .|...+|.+..+|.. +..+++|++|++++|++++
T Consensus 97 l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 97 LQALP-----IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCCCC-----TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCC-----HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 88432 34578889999999998862 2233333 333335666666654 6777888888888888874
Q ss_pred CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcc
Q 047084 150 DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 150 ~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~ 187 (437)
..+..+ ++..+.++.|++.. +.....++.|+|++|.++
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 333222 34455555665511 112233455666666654
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=2.2e-19 Score=184.87 Aligned_cols=269 Identities=15% Similarity=0.161 Sum_probs=173.1
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccc--hhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP--VEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp--~~~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+ |..|.++++|++|+|++|.|..+|.. .+++|++|++++|.+..+| ..|+++++|++|++++|
T Consensus 79 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 79 RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred cEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 6899999999888 55789999999999999999989877 8999999999988888765 67999999999999999
Q ss_pred cccccccccc---------------------ccccc--------------------------cCCccCcEEEeecCC---
Q 047084 78 NYTAGFAAAK---------------------LHEGF--------------------------GSLTNLQKLCIIEAD--- 107 (437)
Q Consensus 78 ~l~~~~~~~~---------------------lp~~~--------------------------~~l~~L~~L~l~~n~--- 107 (437)
.+++.. ... .|..+ ..+++|+.|++++|.
T Consensus 157 ~l~~~~-~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (562)
T 3a79_B 157 KFRQLD-LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235 (562)
T ss_dssp BCCTTT-TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred ccccCc-hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc
Confidence 887321 000 01111 122333334433331
Q ss_pred ------hHhHh------------------------------hccchHhccccc-ccCCchh-------------------
Q 047084 108 ------SEALK------------------------------ELMKLRQLRNLL-KTIPPPL------------------- 131 (437)
Q Consensus 108 ------~~~~~------------------------------~L~~L~~l~n~~-~~ip~~~------------------- 131 (437)
+..+. +|+.|...+|.+ +.+|..+
T Consensus 236 ~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~ 315 (562)
T 3a79_B 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315 (562)
T ss_dssp HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence 00000 222222223333 3555443
Q ss_pred ----------------------------------hcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCCC----
Q 047084 132 ----------------------------------AADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYRS---- 169 (437)
Q Consensus 132 ----------------------------------~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~~---- 169 (437)
..+++|++|++++|++++.+|..+ ++..+.++.|++..
T Consensus 316 ~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp CCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred eeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence 567889999999999997677654 56678888888843
Q ss_pred ---CchhccceeeecCCCCccc-CCC------CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccC
Q 047084 170 ---SEDAEMEEEWDLEPGDVTI-GDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQ 239 (437)
Q Consensus 170 ---~~~~~~~~~L~L~~n~l~~-~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~ 239 (437)
+.....++.|++++|+++. .+. ..+..+.++.|.+.+..+.... .++..+++++|.++. ++.....
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~~-ip~~~~~ 471 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMS-IPKDVTH 471 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCCC-CCTTTTS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCcc-cChhhcC
Confidence 2233456889999999874 221 4566677777776543332110 244456677777764 3333337
Q ss_pred CCceEEEEcCCcEEEEEeCCh--hhHH---Hh-HHcCceEEcCc
Q 047084 240 IHDFSVIDLENNYFLIRLKSP--EDAV---YA-LTEGPWVIFGH 277 (437)
Q Consensus 240 ~~~l~~l~l~~N~f~~~f~~~--~d~~---~v-l~~~pw~~~~~ 277 (437)
...++.+++++|.+.. ++.. ..+. .+ +.++||.+++.
T Consensus 472 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 472 LQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 7889999999998873 2221 1111 11 56677776553
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.4e-19 Score=187.64 Aligned_cols=240 Identities=16% Similarity=0.137 Sum_probs=149.5
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+|+ .|.++++|++|+|++|.+..+|+ .++++++|++|++++|.++.+|.. |+++++|++|++++|
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 578888888877755 67888888888888888866654 467788888888888888888776 578888888888888
Q ss_pred ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSP 152 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p 152 (437)
.+++.. |..|+.+++|++|++++|.. ..+++|..|...+|.+..+ ...++|+.|++++|.++. +|
T Consensus 158 ~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~-~~ 227 (597)
T 3oja_B 158 NLERIE-----DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINV-VR 227 (597)
T ss_dssp CCCBCC-----TTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCE-EE
T ss_pred cCCCCC-----hhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc----cCCchhheeeccCCcccc-cc
Confidence 887543 55678888888888888863 3334444444444544433 344578888888888873 22
Q ss_pred CC--chhhhhhcCCCCCCC---CchhccceeeecCCCCcccCC------CCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084 153 SP--LSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIGD------DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG 221 (437)
Q Consensus 153 ~~--~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~ 221 (437)
.. .++..+.+++|.+.. +.....++.|+|++|.++... ...+..+.++.|.+..++..... ..++..
T Consensus 228 ~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~ 305 (597)
T 3oja_B 228 GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP--IPTLKV 305 (597)
T ss_dssp CSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC--CTTCCE
T ss_pred cccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc--CCCCcE
Confidence 22 256667777777722 223344577888888876332 24455566666555544322110 112223
Q ss_pred CCcCHHHHHHHHHhcccCCCceEEEEcCCcEE
Q 047084 222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF 253 (437)
Q Consensus 222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f 253 (437)
++++.|.+.. ++..+.....++.+++++|.+
T Consensus 306 L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 306 LDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECCSSCCCC-CGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCCCCc-cCcccccCCCCCEEECCCCCC
Confidence 3444444432 222333444555555555554
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=3e-19 Score=192.41 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=100.2
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccC-ccc-ChhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEecee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKV-KII-PKSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l-~~l-p~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~ 76 (437)
++|||++|.++.+ |..|.++++|++|+|++|.. +.+ |.+|.++++|++|+|++|.+..+ |..|+++++|++|+|++
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 5788888888776 55778888888888888853 566 56788888888888887776665 55688888888888888
Q ss_pred ecccccccccccccc--ccCCccCcEEEeecCCh------HhHhhccchHhc---cccc-ccCCchhhcC--CCCCeEEe
Q 047084 77 YNYTAGFAAAKLHEG--FGSLTNLQKLCIIEADS------EALKELMKLRQL---RNLL-KTIPPPLAAD--RSTKKARF 142 (437)
Q Consensus 77 n~l~~~~~~~~lp~~--~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l---~n~~-~~ip~~~~~l--~~L~~L~l 142 (437)
|.+++.. |.. ++++++|++|++++|.. ..+.++++|+.+ +|.+ +..|..+..+ ++|+.|++
T Consensus 107 n~l~~~~-----~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 107 CGLSDAV-----LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp CCCSSCC-----STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred CCCCccc-----ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 8887532 333 67778888888887762 334555555544 3443 3344555544 56666666
Q ss_pred eCCcCCCCCCC
Q 047084 143 RSHEVDADSPS 153 (437)
Q Consensus 143 ~~N~l~~~~p~ 153 (437)
+.|.+.+..|.
T Consensus 182 ~~n~l~~~~~~ 192 (844)
T 3j0a_A 182 AANSLYSRVSV 192 (844)
T ss_dssp CCSBSCCCCCC
T ss_pred CCCcccccccc
Confidence 66666654443
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=5.4e-19 Score=165.11 Aligned_cols=229 Identities=15% Similarity=0.193 Sum_probs=139.6
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~ 80 (437)
.+.++..+.++|..+. .+|++|++++|.+..++. .+.++++|++|++++|.+..++. .+.++++|++|++++|.++
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4555666777776654 467788888888766654 67777888888888777777665 4777888888888888777
Q ss_pred cccccccccccccCCccCcEEEeecCChH-----hHhhccchHh---ccccccc--CCchhhcCCCCCeEEeeCCcCCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKELMKLRQ---LRNLLKT--IPPPLAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~---l~n~~~~--ip~~~~~l~~L~~L~l~~N~l~~~ 150 (437)
+.. +..|.++++|++|++++|... .+..+..|+. .+|.+.. +|..+..+++|++|++++|++++.
T Consensus 90 ~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 90 SLA-----LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp EEC-----TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ccC-----hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 432 355777788888888777622 1222333333 3455544 677888888888888888888854
Q ss_pred CCCCchhhhhhcCCCCCCCCchhccc-eeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHH
Q 047084 151 SPSPLSFKDALVHPEQYRSSEDAEME-EEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVL 229 (437)
Q Consensus 151 ~p~~~~~~~~~l~~n~l~~~~~~~~~-~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l 229 (437)
.+..+.....+ ..+ ..|++++|+++......+.. .++..++++.|.+
T Consensus 165 ~~~~~~~l~~L------------~~l~l~L~ls~n~l~~~~~~~~~~--------------------~~L~~L~L~~n~l 212 (276)
T 2z62_A 165 YCTDLRVLHQM------------PLLNLSLDLSLNPMNFIQPGAFKE--------------------IRLKELALDTNQL 212 (276)
T ss_dssp CGGGGHHHHTC------------TTCCEEEECCSSCCCEECTTSSCS--------------------CCEEEEECCSSCC
T ss_pred CHHHhhhhhhc------------cccceeeecCCCcccccCccccCC--------------------CcccEEECCCCce
Confidence 44333221100 001 14566666665222111100 0122233444544
Q ss_pred HHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHhHHcC
Q 047084 230 CNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEG 270 (437)
Q Consensus 230 ~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~vl~~~ 270 (437)
+...+..+.....++.+++++|.+....+....+..++...
T Consensus 213 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~ 253 (276)
T 2z62_A 213 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 253 (276)
T ss_dssp SCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred eecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhc
Confidence 44444556677889999999999886665555555544433
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=9.5e-19 Score=175.26 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=128.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.++.+| .+..+++|++|++++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|++++|+++
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCS
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCC
Confidence 57899999998887 6888999999999999998776 788999999999988888875 888999999999999888
Q ss_pred cccccccccccccCCccCcEEEeecCChHhH--hhccchHhc---cc-ccccCCchhhcCCCCCeEEeeCCcCCCCCCC-
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL--KELMKLRQL---RN-LLKTIPPPLAADRSTKKARFRSHEVDADSPS- 153 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~--~~L~~L~~l---~n-~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~- 153 (437)
+ +| ++.+++|++|++++|+...+ ..+..|+.+ +| .++.+ .+..+++|++|++++|++++ +|-
T Consensus 120 ~------l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~l~ 188 (457)
T 3bz5_A 120 K------LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LDVS 188 (457)
T ss_dssp C------CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CCCT
T ss_pred e------ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-eccc
Confidence 3 33 77888888888888874332 222333322 34 44555 35667777777777777774 331
Q ss_pred -CchhhhhhcCCCCCCC--CchhccceeeecCCCCcccCCC---CCCCeEeechHHHhhh
Q 047084 154 -PLSFKDALVHPEQYRS--SEDAEMEEEWDLEPGDVTIGDD---GTMPTIKFSKRIQDKL 207 (437)
Q Consensus 154 -~~~~~~~~l~~n~l~~--~~~~~~~~~L~L~~n~l~~~~~---~~lp~l~l~~n~l~~l 207 (437)
...+..+.++.|++.. +.....++.|++++|+++..+. ..+..+.++.|.+.+.
T Consensus 189 ~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp TCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC
T ss_pred cCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCc
Confidence 1134455566666622 2223334556666666664332 2344455555555443
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1.7e-19 Score=189.84 Aligned_cols=278 Identities=16% Similarity=0.163 Sum_probs=140.0
Q ss_pred CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcc-cChhhhcccCCCEEEccCCccc------ccch----hhcCCcC
Q 047084 1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKI-IPKSIGNLLGLETLDLKNTLVR------ELPV----EIRNLKR 68 (437)
Q Consensus 1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~~~~~------~lp~----~~~~L~~ 68 (437)
++|++++|.+..++ ..+.++++|++|++++|.+.. .|..+.++++|++|+++++..+ .+|. .+..+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 45677777776554 356777777777777777643 3445555666666666543322 2332 3555666
Q ss_pred CcEEeceeeccccccccccccccccCCccCcEEEeecCC---------------------------------hHhHhhcc
Q 047084 69 LRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD---------------------------------SEALKELM 115 (437)
Q Consensus 69 L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~---------------------------------~~~~~~L~ 115 (437)
|++|++++|.+++.. |..|.++++|++|++++|. +..+..+.
T Consensus 331 L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIK-----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp CCEEECCSCCBCCCC-----TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCEEECCCCccCCCC-----hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 666666666665432 3345555555555554442 01111111
Q ss_pred chHhc---cccc-ccCC-chhhcCCCCCeEEeeCCcCCC--------------------------CCCCCc----hhhhh
Q 047084 116 KLRQL---RNLL-KTIP-PPLAADRSTKKARFRSHEVDA--------------------------DSPSPL----SFKDA 160 (437)
Q Consensus 116 ~L~~l---~n~~-~~ip-~~~~~l~~L~~L~l~~N~l~~--------------------------~~p~~~----~~~~~ 160 (437)
.|+.+ +|.+ +.+| ..+..+++|++|++++|++++ .+|..+ ++..+
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 11111 2222 1222 223333333333333333321 222222 23344
Q ss_pred hcCCCCCCC-----CchhccceeeecCCCCcccC--------------CCCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084 161 LVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG--------------DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG 221 (437)
Q Consensus 161 ~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~--------------~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~ 221 (437)
.+++|++.. +.....++.|+|++|+++.. ....+..+.++.|.+..++.... .-..++..
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~-~~l~~L~~ 564 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF-KDLFELKI 564 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc-ccccCcce
Confidence 455555511 12233345566666666521 12344555666655554433210 01123444
Q ss_pred CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHH----H----hHHcCceEEcCce-EEEeecCC
Q 047084 222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAV----Y----ALTEGPWVIFGHY-LTVQPWTP 286 (437)
Q Consensus 222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~----~----vl~~~pw~~~~~~-l~l~~w~~ 286 (437)
++++.|.++...+.++.....++.+++++|.+... ....+. . .+.++||.+++.. ..+..|..
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV--EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC--CHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc--ChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 56777777766666777788888888888876532 111111 1 1678999999875 56666753
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=2.1e-19 Score=179.89 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=41.2
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
+|++++|.++.+| .++++++|++|++++|++..+|..+ .+|++|++++|.+..+| +++++++|++|++++|.++
T Consensus 135 ~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 135 YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred EEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence 4555555555555 3555555666666655555454322 35555555555555555 3556666666666666555
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.5e-18 Score=161.33 Aligned_cols=217 Identities=12% Similarity=0.138 Sum_probs=142.3
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~ 78 (437)
++++.+++.++.+|..+ .++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 36889999999999765 468999999999998777 5688999999999998888877 5679999999999999997
Q ss_pred -cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084 79 -YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKTIPP-PLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 79 -l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~ip~-~~~~l~~L~~L~l~~N~l~ 148 (437)
++... |..+..+++|++|++++|.. ..+..+..|+.+ +|.+..+|. .+..+++|++|++++|+++
T Consensus 92 ~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 92 QLRSVD-----PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccccC-----HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 76332 67789999999999999862 222233333332 445555543 3555666666666666665
Q ss_pred CCCCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHH
Q 047084 149 ADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKV 228 (437)
Q Consensus 149 ~~~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~ 228 (437)
+..+..+ .....++.|++++|+++...+..+.. + .++..++++.|.
T Consensus 167 ~~~~~~~---------------~~l~~L~~L~l~~n~l~~~~~~~~~~----------l---------~~L~~L~l~~n~ 212 (285)
T 1ozn_A 167 SVPERAF---------------RGLHSLDRLLLHQNRVAHVHPHAFRD----------L---------GRLMTLYLFANN 212 (285)
T ss_dssp EECTTTT---------------TTCTTCCEEECCSSCCCEECTTTTTT----------C---------TTCCEEECCSSC
T ss_pred ccCHHHh---------------cCccccCEEECCCCcccccCHhHccC----------c---------ccccEeeCCCCc
Confidence 3222111 11233455666666665221111100 0 011222334444
Q ss_pred HHHHHHhcccCCCceEEEEcCCcEEEEEeC
Q 047084 229 LCNRLKVMWHQIHDFSVIDLENNYFLIRLK 258 (437)
Q Consensus 229 l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~ 258 (437)
++...+..+.....++.+++++|.|.....
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 444344456677889999999999875433
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=4.9e-19 Score=190.73 Aligned_cols=249 Identities=17% Similarity=0.185 Sum_probs=163.8
Q ss_pred CEEEecCCC-CCcC-CccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccc-cchh--hcCCcCCcEEec
Q 047084 1 KVLDLEDAP-VDYL-PEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRE-LPVE--IRNLKRLRYLMV 74 (437)
Q Consensus 1 ~~L~L~~n~-l~~l-p~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~L~~L~~L~l 74 (437)
|+|+|++|. +..+ |..|.++++|++|+|++|.+..+ |..|+++++|++|++++|.+.. +|.. ++++++|++|++
T Consensus 51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 689999995 5777 66899999999999999999754 7889999999999999777764 5665 899999999999
Q ss_pred eeeccccccccccccccccCCccCcEEEeecCCh-----HhHhhc--cchHhc---cccc-ccCCchhhcCCC------C
Q 047084 75 YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKEL--MKLRQL---RNLL-KTIPPPLAADRS------T 137 (437)
Q Consensus 75 ~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L--~~L~~l---~n~~-~~ip~~~~~l~~------L 137 (437)
++|.+++.. .+..|+++++|++|++++|.. ..+..+ ..|+.+ .|.+ +..|..++.+++ |
T Consensus 131 s~N~l~~~~----~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 131 SKNQIRSLY----LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp ESCCCCCCC----CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred CCCcccccc----cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 999998653 245799999999999999973 344333 334433 3433 455555555444 8
Q ss_pred CeEEeeCCcCCCCCCCCc------------------------------------------hhhhhhcCCCCC-----CCC
Q 047084 138 KKARFRSHEVDADSPSPL------------------------------------------SFKDALVHPEQY-----RSS 170 (437)
Q Consensus 138 ~~L~l~~N~l~~~~p~~~------------------------------------------~~~~~~l~~n~l-----~~~ 170 (437)
+.|++++|.+++.+|..+ ++..+.++.|.+ ..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 899999998876555432 122233444444 112
Q ss_pred chhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceE
Q 047084 171 EDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFS 244 (437)
Q Consensus 171 ~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~ 244 (437)
.....++.|+|++|+++...+ ..+..+.++.|.+..+.+.... ...++..++++.|.+....+..+.....++
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS-SCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc-CCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 223344556666666653322 3455556666655544332111 111333445566666555555666677777
Q ss_pred EEEcCCcEEE
Q 047084 245 VIDLENNYFL 254 (437)
Q Consensus 245 ~l~l~~N~f~ 254 (437)
.+++++|.+.
T Consensus 366 ~L~Ls~N~l~ 375 (844)
T 3j0a_A 366 TLDLRDNALT 375 (844)
T ss_dssp EEEEETCCSC
T ss_pred EEECCCCCCC
Confidence 7777777643
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=3.1e-18 Score=159.97 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=140.9
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n 77 (437)
++|++++|.++.++. .+.++++|++|++++|.+..+++ .+.++++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 589999999998876 78999999999999999987764 78899999999999888888774 5899999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCCh------HhHhhccchHhc---ccccccCC-chhhcCCCCC----eEEee
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS------EALKELMKLRQL---RNLLKTIP-PPLAADRSTK----KARFR 143 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l---~n~~~~ip-~~~~~l~~L~----~L~l~ 143 (437)
.+++.. +..++.+++|++|++++|.. ..+..+..|+.+ +|.+..++ ..+..+++|+ +|+++
T Consensus 111 ~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 111 NLASLE-----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CCCCST-----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CccccC-----chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 998543 33588999999999999973 345555555554 67776665 4566666666 89999
Q ss_pred CCcCCCCCCCCc---hhhhhhcCCCCCCC-----CchhccceeeecCCCCcc
Q 047084 144 SHEVDADSPSPL---SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 144 ~N~l~~~~p~~~---~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~ 187 (437)
+|++++..+..+ ++..+.+++|++.. +.....++.|++++|+++
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 999995444333 56677788888722 223345677888888887
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=6.2e-19 Score=185.54 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=105.6
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+|. .|.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|+. |+++++|++|++++|
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 578888888888876 578888888888888888644 56788888888888888888888874 888888888888888
Q ss_pred ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccccCCc-hhh--cCCCCCeEEeeCCc
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKTIPP-PLA--ADRSTKKARFRSHE 146 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~ip~-~~~--~l~~L~~L~l~~N~ 146 (437)
.+++.. |..|+++++|++|++++|.. ..+.++..|+.+ +|.+..++. .+. .+++|++|++++|+
T Consensus 108 ~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 108 SIQKIK-----NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCCCCC-----SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ccCccC-----hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 887432 45678888888888888762 223333344333 555555543 232 44677777777777
Q ss_pred CCCCCCC
Q 047084 147 VDADSPS 153 (437)
Q Consensus 147 l~~~~p~ 153 (437)
+++..|.
T Consensus 183 l~~~~~~ 189 (680)
T 1ziw_A 183 IKEFSPG 189 (680)
T ss_dssp CCCBCTT
T ss_pred ccccChh
Confidence 7754443
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=8.3e-19 Score=176.37 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=35.6
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
.|+++++.+..+| .+..+++|++|++++|.+..+|+ +.++++|++|++++|.+..+++ ++++++|++|++++|.++
T Consensus 50 ~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~ 125 (466)
T 1o6v_A 50 TLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT 125 (466)
T ss_dssp EEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC
Confidence 3444444444444 24444445555555554444433 4444444444444444444443 444444444444444444
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=7.5e-19 Score=169.57 Aligned_cols=241 Identities=15% Similarity=0.164 Sum_probs=165.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.++.+|. +.++++|++|++++|.+..+| .+.++++|++|++++|.+..+|. +..+++|++|++++|...
T Consensus 69 ~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~ 145 (347)
T 4fmz_A 69 EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNL 145 (347)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTC
T ss_pred cEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCc
Confidence 589999999998876 899999999999999998774 68899999999999888888887 888999999999998654
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHh---cccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQ---LRNLLKTIPPPLAADRSTKKARFRSHEVDADSP-- 152 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~---l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p-- 152 (437)
.. +..+..+++|++|++++|.... +..+..|+. .+|.+..++. +..+++|+.|++++|.+++..+
T Consensus 146 ~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 218 (347)
T 4fmz_A 146 SD------LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVA 218 (347)
T ss_dssp CC------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGG
T ss_pred cc------ccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhh
Confidence 32 3347888888888888886322 333333333 3566666655 6777777777877777774322
Q ss_pred CCchhhhhhcCCCCCCC---CchhccceeeecCCCCcccC----CCCCCCeEeechHHHhhhcccccceEEEEecCCCcC
Q 047084 153 SPLSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIG----DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIG 225 (437)
Q Consensus 153 ~~~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~----~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls 225 (437)
...++..+.+++|.+.. ......++.|++++|+++.. ....+..+.++.+.+..++... ...++..++++
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~l~~L~~L~L~ 295 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLN---NLSQLNSLFLN 295 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGG---GCTTCSEEECC
T ss_pred cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhc---CCCCCCEEECc
Confidence 11245566667776622 22333456677777776632 2245566666666555542211 11234445677
Q ss_pred HHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 226 YKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 226 ~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
.|.+....+..+...+.++.+++++|.+.
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccc
Confidence 77776666777777888888888888765
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=2.4e-19 Score=183.84 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=64.8
Q ss_pred hhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCCCCc--hhccceeeecCCCCcccC--CCCCCCeEeechH
Q 047084 131 LAADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYRSSE--DAEMEEEWDLEPGDVTIG--DDGTMPTIKFSKR 202 (437)
Q Consensus 131 ~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~~~~--~~~~~~~L~L~~n~l~~~--~~~~lp~l~l~~n 202 (437)
+..+++|++|++++|+++ .+|..+ ++..+.+++|++.... ....++.|+|++|+++.. ..+.+..+.++.|
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence 344455555555555555 344332 3344445555552111 112345566666666532 1245556666666
Q ss_pred HHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE
Q 047084 203 IQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR 256 (437)
Q Consensus 203 ~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~ 256 (437)
.+..++.. . ...++..+++++|.+++..+..+.....++.+++++|.|...
T Consensus 462 ~l~~ip~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 462 KLKTLPDA-S--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCSSCCCG-G--GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred ccCcCCCc-c--cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 66654432 1 122344456677777666666667777777777777776533
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=2.3e-19 Score=184.00 Aligned_cols=145 Identities=26% Similarity=0.309 Sum_probs=106.4
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+ |..|.++++|++|++++|++..++ .+++++++|++|++++|.+..+|+. |+++++|++|++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 5789999998777 457888999999999999987555 6788899999999998888887775 889999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCC------hHhHhhccchHhc---cccc-ccCCchhh---------------
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKELMKLRQL---RNLL-KTIPPPLA--------------- 132 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~l---~n~~-~~ip~~~~--------------- 132 (437)
.+++. .+|..++++++|++|++++|. +..+..+.+|+.+ +|.+ +.+|..+.
T Consensus 109 ~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 109 PYQTL----GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CCSSS----CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred ccccc----chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 88743 235667888888888888875 1334444444444 3333 23444333
Q ss_pred ---------cCCCCCeEEeeCCcCCC
Q 047084 133 ---------ADRSTKKARFRSHEVDA 149 (437)
Q Consensus 133 ---------~l~~L~~L~l~~N~l~~ 149 (437)
.+++|++|++++|++++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccchhhHhhcccccEEEccCCcccc
Confidence 46778888888888875
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=7.4e-18 Score=160.05 Aligned_cols=175 Identities=18% Similarity=0.214 Sum_probs=125.9
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.+..+| .+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .+..+++|++|++++|.++
T Consensus 44 ~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC
T ss_pred CEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCC
Confidence 57899999998887 68889999999999999988877 889999999999988888876 5889999999999999988
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCC-
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPS- 153 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~- 153 (437)
+ ++. +..+++|+.|++++|.... +..+..|+.+ +|.+..++. +..+++|+.|++++|++++ ++.
T Consensus 121 ~------~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l 191 (308)
T 1h6u_A 121 D------VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-ISPL 191 (308)
T ss_dssp C------CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGG
T ss_pred C------chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-Chhh
Confidence 4 343 8889999999999987332 3333333333 566666665 7788888888888888874 332
Q ss_pred --CchhhhhhcCCCCCCC---CchhccceeeecCCCCcc
Q 047084 154 --PLSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 154 --~~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~ 187 (437)
...+..+.+++|++.. ......++.|+|++|+++
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 1133444555555511 111223344555555554
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=3.6e-18 Score=170.88 Aligned_cols=212 Identities=16% Similarity=0.100 Sum_probs=140.8
Q ss_pred CCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcE
Q 047084 21 FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQK 100 (437)
Q Consensus 21 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~ 100 (437)
++|++|++++|++..+| +++++++|++|++++|.++.+|..+ ++|++|++++|+++ .+| .++.+++|+.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~------~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE------ELP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS------SCC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC------cCc-cccCCCCCCE
Confidence 45666666666666666 4666777777777766666666533 46777777777766 345 5888899999
Q ss_pred EEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc-hhhhhhcCCCCCCC-Cchhc
Q 047084 101 LCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAE 174 (437)
Q Consensus 101 L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~ 174 (437)
|++++|....+ .+|+.|...+|.+..+|. ++.+++|++|++++|++++ +|..+ ++..+.++.|++.. .....
T Consensus 200 L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~ 277 (454)
T 1jl5_A 200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQ 277 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCT
T ss_pred EECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccC
Confidence 99999874433 356666666788888884 8899999999999999995 55543 56677788888732 22234
Q ss_pred cceeeecCCCCcccC--CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcE
Q 047084 175 MEEEWDLEPGDVTIG--DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNY 252 (437)
Q Consensus 175 ~~~~L~L~~n~l~~~--~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~ 252 (437)
.++.|++++|+++.. .+..+..+.++.|.+..++... .++..++++.|.+++ ++. ....++.+++++|.
T Consensus 278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~-----~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP-----PSLEELNVSNNKLIE-LPA---LPPRLERLIASFNH 348 (454)
T ss_dssp TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC-----TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc-----CcCCEEECCCCcccc-ccc---cCCcCCEEECCCCc
Confidence 567889999998852 2346667777777665543210 123334556665553 222 24677888888886
Q ss_pred EE
Q 047084 253 FL 254 (437)
Q Consensus 253 f~ 254 (437)
+.
T Consensus 349 l~ 350 (454)
T 1jl5_A 349 LA 350 (454)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.5e-18 Score=180.04 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=119.5
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l 79 (437)
+++.+++.++++|..+. ++|++|++++|.+..+++ .|.++++|++|++++|.+..+++ .|+++++|++|++++|.+
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 56777777888877654 677888888888765553 67778888888888777776643 577888888888888877
Q ss_pred ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccc--cCCchhhcCCCCCeEEeeCCcCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLK--TIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~--~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
++.. |..|+++++|++|++++|.. ..+.++..|+.+ +|.+. .+|..++++++|++|++++|++++
T Consensus 93 ~~~~-----p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 93 QSFS-----PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCC-----TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cccC-----hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 7432 66777888888888887762 233344444444 55554 467888888888888888888886
Q ss_pred CCCCCchhh--------hhhcCCCCCCC----CchhccceeeecCCCCc
Q 047084 150 DSPSPLSFK--------DALVHPEQYRS----SEDAEMEEEWDLEPGDV 186 (437)
Q Consensus 150 ~~p~~~~~~--------~~~l~~n~l~~----~~~~~~~~~L~L~~n~l 186 (437)
..|..+... .+.++.|.+.. ......++.|++++|.+
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCcc
Confidence 666655321 35566776621 11122456677777655
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.4e-17 Score=156.67 Aligned_cols=139 Identities=20% Similarity=0.212 Sum_probs=103.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l 79 (437)
+.+++++|.++.+|..+. +.|+.|+|++|.++.+ |..+.++++|++|++++|.++.+|.. +.+++|++|++++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC
T ss_pred cEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC
Confidence 468889999999988775 6889999999999755 46788899999999998888888775 7889999999999998
Q ss_pred ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccccCCch-hhcCCCCCeEEeeCCcCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKTIPPP-LAADRSTKKARFRSHEVD 148 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~ip~~-~~~l~~L~~L~l~~N~l~ 148 (437)
+ .+|..+..+++|++|++++|+. ..+..+..|+.+ +|.+..+|.. +..+++|+.|+|++|+|+
T Consensus 90 ~------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 90 Q------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp S------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred C------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 8 5687888899999999998862 223333333333 4555555533 445666666666666666
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.3e-18 Score=165.49 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=139.1
Q ss_pred EEEecCCCCCc--CCcccc-------CCCCCcEEEeecccCc-ccChhh--hcccCCCEEEccCCcccccchhhcCC---
Q 047084 2 VLDLEDAPVDY--LPEGVG-------NLFNLHYLSVKNTKVK-IIPKSI--GNLLGLETLDLKNTLVRELPVEIRNL--- 66 (437)
Q Consensus 2 ~L~L~~n~l~~--lp~~~~-------~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~l~~~~~~~lp~~~~~L--- 66 (437)
+|+|++|.++. +|..+. ++++|++|+|++|.+. .+|..+ ..+++|++|++++|.++.+|..++.+
T Consensus 67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~ 146 (312)
T 1wwl_A 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146 (312)
T ss_dssp HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTT
T ss_pred hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHh
Confidence 46788888743 555555 7999999999999995 788876 88999999999999998888888887
Q ss_pred --cCCcEEeceeeccccccccccccccccCCccCcEEEeecCCh-------HhH--hhccchHhc---ccccccCC---c
Q 047084 67 --KRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-------EAL--KELMKLRQL---RNLLKTIP---P 129 (437)
Q Consensus 67 --~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-------~~~--~~L~~L~~l---~n~~~~ip---~ 129 (437)
++|++|++++|++++.. |..|+.+++|++|++++|+. ..+ ..+..|+.+ +|.+..++ .
T Consensus 147 ~~~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 147 LKPGLKVLSIAQAHSLNFS-----CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp CCTTCCEEEEESCSCCCCC-----TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred hcCCCcEEEeeCCCCccch-----HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 99999999999998543 57899999999999999982 122 334444444 67776443 3
Q ss_pred h-hhcCCCCCeEEeeCCcCCCCCCC-C----chhhhhhcCCCCCCCCc--hhccceeeecCCCCccc
Q 047084 130 P-LAADRSTKKARFRSHEVDADSPS-P----LSFKDALVHPEQYRSSE--DAEMEEEWDLEPGDVTI 188 (437)
Q Consensus 130 ~-~~~l~~L~~L~l~~N~l~~~~p~-~----~~~~~~~l~~n~l~~~~--~~~~~~~L~L~~n~l~~ 188 (437)
. +..+++|++|++++|++++..|. . .++..+.+++|++.... ....++.|+|++|+++.
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR 288 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCS
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCC
Confidence 3 35789999999999999976642 2 25677888999883211 11467889999999973
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=1.8e-18 Score=173.85 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=174.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|+|++|.++.+|+ +.++++|++|++++|.+..+++ +.++++|++|++++|.+..+|. +.++++|++|++++|.++
T Consensus 71 ~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 71 TQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC
T ss_pred CEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccC
Confidence 689999999999987 9999999999999999988776 9999999999999999999887 999999999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCC--hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCC--
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEAD--SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPS-- 153 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~--~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~-- 153 (437)
+ ++ .++.+++|+.|+++++- ...+..++.|+.+ +|.+..++ .+..+++|++|++++|.+++..|-
T Consensus 148 ~------~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 148 D------IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp C------CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred C------Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccc
Confidence 4 34 48899999999997543 2234444444444 66666665 488999999999999999965441
Q ss_pred CchhhhhhcCCCCCCC---CchhccceeeecCCCCcccCC----CCCCCeEeechHHHhhhcccccceEEEEecCCCcCH
Q 047084 154 PLSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIGD----DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGY 226 (437)
Q Consensus 154 ~~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~~----~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~ 226 (437)
..++..+.+++|++.. ......++.|++++|+++... ...+..+.++.+.+..+++.. . ..++..++++.
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--l~~L~~L~L~~ 296 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-G--LTALTNLELNE 296 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT-T--CTTCSEEECCS
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccccc-C--CCccCeEEcCC
Confidence 1256677788888833 233445688999999987332 245666777776665544311 1 12233344555
Q ss_pred HHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 227 KVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 227 n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
|.+.+..+ +...+.++.+++++|.+.
T Consensus 297 n~l~~~~~--~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 297 NQLEDISP--ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp SCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred CcccCchh--hcCCCCCCEEECcCCcCC
Confidence 55544322 556677778888877654
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=5.1e-19 Score=184.10 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=55.9
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|||++|+|+.+|+ .|.++++|++|+|++|+|..+|+ +|.++++|++|+|++|.++.+|++ |.+|++|++|++++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 467777777777754 56777777777777777766653 466677777777777667766654 666777777777777
Q ss_pred cccc
Q 047084 78 NYTA 81 (437)
Q Consensus 78 ~l~~ 81 (437)
++++
T Consensus 135 ~l~~ 138 (635)
T 4g8a_A 135 NLAS 138 (635)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6663
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=1.9e-18 Score=177.81 Aligned_cols=103 Identities=26% Similarity=0.300 Sum_probs=64.7
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+++ .|.++++|++|+|++|.+..+| ..|.++++|++|++++|.+..+|. .++++++|++|++++|
T Consensus 55 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred eEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC
Confidence 355566665555533 3555666666666666654443 445566666666666555555554 3666667777777777
Q ss_pred ccccccccccccccccCCccCcEEEeecCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
.+++. .+|..|+++++|++|++++|.
T Consensus 135 ~l~~~----~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 135 LIQSF----KLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCCCC----CCCGGGGGCTTCCEEECTTSC
T ss_pred cccee----cChhhhcccCCCCEEeCcCCc
Confidence 66632 357778888888888888886
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=2.4e-17 Score=153.49 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=132.2
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.+|. .|.++++|++|++++|.+..+|.. +.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 579999999999976 689999999999999999988865 57799999999999999998875 789999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchH---hcccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLR---QLRNLLKTIPP-PLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~---~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~ 148 (437)
.+++.. +..|+.+++|++|++++|.. ..+..+..|+ ..+|.+..+|. .+..+++|++|++++|+++
T Consensus 120 ~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 120 QLKSLP-----PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccCeeC-----HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 998543 45689999999999999972 2234444444 44777877875 5788999999999999999
Q ss_pred CCCCCCc----hhhhhhcCCCCC
Q 047084 149 ADSPSPL----SFKDALVHPEQY 167 (437)
Q Consensus 149 ~~~p~~~----~~~~~~l~~n~l 167 (437)
+..+..+ ++..+.+++|.+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCHHHhccccCCCEEEecCCCe
Confidence 5433333 456677888876
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=158.91 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=123.4
Q ss_pred CEEEecCCCCC-cCCccc--cCCCCCcEEEeecccCcc-cC----hhhhcccCCCEEEccCCcccccch-hhcCCcCCcE
Q 047084 1 KVLDLEDAPVD-YLPEGV--GNLFNLHYLSVKNTKVKI-IP----KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRY 71 (437)
Q Consensus 1 ~~L~L~~n~l~-~lp~~~--~~l~~L~~L~L~~n~l~~-lp----~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~ 71 (437)
++|++++|.+. ..|..+ .++++|++|+|++|.+.. .+ ..+..+++|++|++++|.+..++. .++++++|++
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 173 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS 173 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence 57889999885 456666 888999999999998853 33 344578899999999887777764 5888999999
Q ss_pred Eeceeecccccccccccc--ccccCCccCcEEEeecCChHh--------HhhccchHhc---ccccccC-CchhhcC---
Q 047084 72 LMVYQYNYTAGFAAAKLH--EGFGSLTNLQKLCIIEADSEA--------LKELMKLRQL---RNLLKTI-PPPLAAD--- 134 (437)
Q Consensus 72 L~l~~n~l~~~~~~~~lp--~~~~~l~~L~~L~l~~n~~~~--------~~~L~~L~~l---~n~~~~i-p~~~~~l--- 134 (437)
|++++|++.+.. .++ ..++.+++|++|++++|+... +..+..|+.+ +|.+..+ |..+..+
T Consensus 174 L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 174 LDLSDNPGLGER---GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp EECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred EECCCCCCccch---hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 999999876431 122 224678889999999887321 2233444433 5666554 6666655
Q ss_pred CCCCeEEeeCCcCCCCCCCCc--hhhhhhcCCCCCCC---CchhccceeeecCCCCcc
Q 047084 135 RSTKKARFRSHEVDADSPSPL--SFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 135 ~~L~~L~l~~N~l~~~~p~~~--~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~ 187 (437)
++|++|+|++|+|+ .+|..+ ++..+.++.|++.. +.....++.|+|++|+++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 58888888888888 566544 45556666666622 222333455666666664
No 65
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=3.9e-17 Score=150.31 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=118.6
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
++++++++.++.+|..+. ..|+.|+|++|.+..++ ..+.++++|++|++++|.+..+++. |.++++|++|++++|+
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 468999999999998776 58999999999997665 5688999999999998888887765 8999999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCChH-----hHh---hccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALK---ELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~---~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~ 149 (437)
+++.. +..|..+++|++|++++|... .+. +|+.|...+|.+..+|. .+..+++|++|+|++|++++
T Consensus 95 l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 95 LASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccC-----hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 98432 455789999999999998622 122 23333333555555554 45666666666666666664
Q ss_pred CCCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084 150 DSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 150 ~~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~ 187 (437)
..+..+. ....++.|+|++|+++
T Consensus 170 ~~~~~~~---------------~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPHGAFD---------------RLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTT---------------TCTTCCEEECCSCCBC
T ss_pred cCHHHHh---------------CCCCCCEEEeeCCcee
Confidence 3332221 1223566788888876
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.2e-17 Score=157.24 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=135.1
Q ss_pred CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l 79 (437)
++|+|++|.++.++ ..|.++++|++|+|++|.|..++.. ..+++|++|++++|.++.+|..+..+++|++|++++|++
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcC
Confidence 57999999998885 5789999999999999999877654 789999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCccCcEEEeecCCh-----HhHh---hccchHhcccccccCCch-hhcCCCCCeEEeeCCcCCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALK---ELMKLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~---~L~~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~~ 150 (437)
++.. |..|..+++|++|++++|+. ..+. +|+.|...+|.+..+|.. +..+++|++|+|++|+|+ .
T Consensus 113 ~~l~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 113 TSLP-----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CCCC-----SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred cccC-----HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 9442 46689999999999999972 2333 444444447888889865 568999999999999999 6
Q ss_pred CCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084 151 SPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 151 ~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~ 187 (437)
+|..+.- ...++.|+|++|.+.
T Consensus 187 ip~~~~~---------------~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 187 IPKGFFG---------------SHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTT---------------TCCCSEEECCSCCBC
T ss_pred cChhhcc---------------cccCCeEEeCCCCcc
Confidence 7764321 113466788888875
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=161.30 Aligned_cols=160 Identities=23% Similarity=0.280 Sum_probs=118.8
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|++++|.++.+|. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.++.+|.. ++++++|++|++++|
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 578999999988876 6888999999999999987664 5688899999999998888888887 888999999999999
Q ss_pred ccccccccccccc--cccCCccCcEEEeecCC------hHhHhhccchHhc---cccccc-CCchhhcCCCCCeEEeeCC
Q 047084 78 NYTAGFAAAKLHE--GFGSLTNLQKLCIIEAD------SEALKELMKLRQL---RNLLKT-IPPPLAADRSTKKARFRSH 145 (437)
Q Consensus 78 ~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~l---~n~~~~-ip~~~~~l~~L~~L~l~~N 145 (437)
+++ .+|. .+..+++|++|++++|+ +..+..+..|+.+ +|.+.. .|..+..+++|++|++++|
T Consensus 135 ~l~------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 135 PYK------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp CCS------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCc------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 888 3455 57888899999998884 2344445555444 455443 4667777777777887777
Q ss_pred cCCCCCCCC-----chhhhhhcCCCCC
Q 047084 146 EVDADSPSP-----LSFKDALVHPEQY 167 (437)
Q Consensus 146 ~l~~~~p~~-----~~~~~~~l~~n~l 167 (437)
.++ .+|.. .++..+.+++|.+
T Consensus 209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 209 QHI-LLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp CST-THHHHHHHHTTTEEEEEEESCBC
T ss_pred ccc-cchhhhhhhcccccEEECCCCcc
Confidence 775 33332 1344455556655
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=8.9e-17 Score=149.76 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=109.2
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l 79 (437)
+.|++++|.++.++ .+..+++|++|++++|.+..+ +.+..+++|++|++++|.++.+|+. +.++++|++|++++|++
T Consensus 44 ~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 44 DQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence 46788888887775 577888888888888888765 4678888888888888888777765 68888888888888888
Q ss_pred ccccccccccccccCCccCcEEEeecCChH-----hHhh---ccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKE---LMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~---L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~~ 150 (437)
++.. +..|+.+++|++|++++|... .+.. |+.|...+|.+..+|. .+..+++|++|++++|++++.
T Consensus 122 ~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 122 QSLP-----DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CccC-----HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 7432 344788888888888887621 1222 2222222444444443 234555555555555555543
Q ss_pred CCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084 151 SPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 151 ~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~ 187 (437)
.|..+ .....++.|++++|.++
T Consensus 197 ~~~~~---------------~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 197 PDGVF---------------DRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTT---------------TTCTTCCEEECCSSCBC
T ss_pred CHHHH---------------hCCcCCCEEEccCCCcc
Confidence 32211 12234567888888876
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=3.6e-17 Score=149.34 Aligned_cols=167 Identities=13% Similarity=0.196 Sum_probs=93.5
Q ss_pred EEEecCCCCCcCCc-cccCCCCCcEEEeeccc-CcccCh-hhhcccCCCEEEccC-Ccccccch-hhcCCcCCcEEecee
Q 047084 2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTK-VKIIPK-SIGNLLGLETLDLKN-TLVRELPV-EIRNLKRLRYLMVYQ 76 (437)
Q Consensus 2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~-l~~lp~-~~~~l~~L~~L~l~~-~~~~~lp~-~~~~L~~L~~L~l~~ 76 (437)
+|++++|+++.+|+ .|.++++|++|++++|. ++.+++ .+.++++|++|++++ |.++.+|. .|.++++|++|++++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 45566666655544 45556666666666664 555543 455556666666654 55555554 355566666666666
Q ss_pred eccccccccccccccccCCccCc---EEEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCC-eEEeeCCcCCCCC
Q 047084 77 YNYTAGFAAAKLHEGFGSLTNLQ---KLCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTK-KARFRSHEVDADS 151 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~~L~---~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~-~L~l~~N~l~~~~ 151 (437)
|.+++ +|. +..+++|+ +|++++|. .+..+|. .+..+++|+ +|++++|+++ .+
T Consensus 115 n~l~~------lp~-~~~l~~L~~L~~L~l~~N~---------------~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i 171 (239)
T 2xwt_C 115 TGLKM------FPD-LTKVYSTDIFFILEITDNP---------------YMTSIPVNAFQGLCNETLTLKLYNNGFT-SV 171 (239)
T ss_dssp ECCCS------CCC-CTTCCBCCSEEEEEEESCT---------------TCCEECTTTTTTTBSSEEEEECCSCCCC-EE
T ss_pred CCCcc------ccc-cccccccccccEEECCCCc---------------chhhcCcccccchhcceeEEEcCCCCCc-cc
Confidence 65552 343 55555555 55555540 3444443 356666777 7777777766 44
Q ss_pred CCC----chhhhhhcCCCC-CC-----CCchh-ccceeeecCCCCcccCCC
Q 047084 152 PSP----LSFKDALVHPEQ-YR-----SSEDA-EMEEEWDLEPGDVTIGDD 191 (437)
Q Consensus 152 p~~----~~~~~~~l~~n~-l~-----~~~~~-~~~~~L~L~~n~l~~~~~ 191 (437)
|.. .++..+.+++|+ +. .+... ..++.|++++|+++..+.
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 432 134555666663 51 12223 456889999999975443
No 70
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=3.5e-16 Score=141.89 Aligned_cols=149 Identities=16% Similarity=0.192 Sum_probs=119.0
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
+.++.+++.++.+|..+. ++|++|+|++|.|..+ |..+.++++|++|++++|.++.+|.. |..+++|++|+|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 368899999999998765 8999999999999766 57788999999999999999999876 7899999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCchhh
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFK 158 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~ 158 (437)
+++.. +..|..+++|++|++++|+ +..+|..+..+++|++|+|++|+|++..+..+..
T Consensus 100 l~~l~-----~~~~~~l~~L~~L~Ls~N~----------------l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~- 157 (229)
T 3e6j_A 100 LTVLP-----SAVFDRLVHLKELFMCCNK----------------LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR- 157 (229)
T ss_dssp CCCCC-----TTTTTTCTTCCEEECCSSC----------------CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT-
T ss_pred CCccC-----hhHhCcchhhCeEeccCCc----------------ccccCcccccCCCCCEEECCCCcCCccCHHHHhC-
Confidence 98432 3457899999999999864 4567878888899999999999998433322211
Q ss_pred hhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084 159 DALVHPEQYRSSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 159 ~~~l~~n~l~~~~~~~~~~~L~L~~n~l~ 187 (437)
...++.|+|++|.++
T Consensus 158 --------------l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 --------------LSSLTHAYLFGNPWD 172 (229)
T ss_dssp --------------CTTCCEEECTTSCBC
T ss_pred --------------CCCCCEEEeeCCCcc
Confidence 123455677777765
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=1.5e-16 Score=146.46 Aligned_cols=148 Identities=20% Similarity=0.287 Sum_probs=122.0
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.++.++. .+.++++|++|+|++|.+..++ ..+.++++|++|++++|.++.+|.. |..+++|++|++++|
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 579999999988865 6899999999999999997665 4588999999999999999988865 799999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHh---cccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQ---LRNLLKTIPP-PLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~---l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~ 148 (437)
++++.. +..|..+++|++|++++|.. ..+..+..|+. .+|.+..+|. .+..+++|++|++++|+++
T Consensus 118 ~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 118 QLKSLP-----SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcC-----hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 998432 34478999999999999972 23444444444 4788877775 6889999999999999999
Q ss_pred CCCCC
Q 047084 149 ADSPS 153 (437)
Q Consensus 149 ~~~p~ 153 (437)
+....
T Consensus 193 c~~~~ 197 (251)
T 3m19_A 193 CSRCE 197 (251)
T ss_dssp TTSTT
T ss_pred CCccc
Confidence 65343
No 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.4e-16 Score=140.98 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=75.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc-cchhhcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE-LPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~n~l 79 (437)
++|++++|.++.+| .+..+++|++|++++|.+..+ +.+..+++|++|++++|.++. .|..++.+++|++|++++|.+
T Consensus 47 ~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 47 TYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred cEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 35666666666665 566666666666666655443 355566666666666555543 455566666666666666666
Q ss_pred ccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
++. .|..++.+++|++|++++|. .++.+| .+..+++|++|++++|++++
T Consensus 125 ~~~-----~~~~l~~l~~L~~L~L~~n~---------------~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 125 DDS-----ILTKINTLPKVNSIDLSYNG---------------AITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp BGG-----GHHHHTTCSSCCEEECCSCT---------------BCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CcH-----hHHHHhhCCCCCEEEccCCC---------------CccccH-hhcCCCCCCEEECCCCCCcC
Confidence 532 24555666666666666653 144444 46667777777777777763
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-16 Score=158.11 Aligned_cols=175 Identities=14% Similarity=0.113 Sum_probs=129.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.++.+| ++.+++|++|++++|.+..+| ++++++|++|++++|.++.+| ++.+++|++|++++|+++
T Consensus 67 ~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 67 TKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp SEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCS
T ss_pred CEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccc
Confidence 58999999998886 889999999999999998775 889999999999988888886 889999999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCC------hHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC-CCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD-SPS 153 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~-~p~ 153 (437)
+ ++ ++.+++|+.|++++|. +..+++|+.|...+|.+..+| +..+++|+.|++++|++++. +..
T Consensus 141 ~------l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~ 210 (457)
T 3bz5_A 141 E------ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQ 210 (457)
T ss_dssp C------CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTT
T ss_pred e------ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeecccc
Confidence 4 22 6778888888888884 233344444444466676676 66777788888888877753 111
Q ss_pred CchhhhhhcCCCCCCC--CchhccceeeecCCCCcccCCC
Q 047084 154 PLSFKDALVHPEQYRS--SEDAEMEEEWDLEPGDVTIGDD 191 (437)
Q Consensus 154 ~~~~~~~~l~~n~l~~--~~~~~~~~~L~L~~n~l~~~~~ 191 (437)
..++..+.++.|++.. ......++.|++++|+++..+.
T Consensus 211 l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCH
Confidence 2245566677777622 2223345667777777765444
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.2e-16 Score=166.07 Aligned_cols=146 Identities=18% Similarity=0.290 Sum_probs=118.7
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~ 80 (437)
.+-++.+++++|+.+. .++++|||++|+|+.+| .+|.++++|++|+|++|.++.+|++ |.+|++|++|+|++|+++
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3455667899998764 47999999999999887 4699999999999999999999875 899999999999999998
Q ss_pred ccccccccc-ccccCCccCcEEEeecCChH-----hHhhccchHhc---cccccc--CCchhhcCCCCCeEEeeCCcCCC
Q 047084 81 AGFAAAKLH-EGFGSLTNLQKLCIIEADSE-----ALKELMKLRQL---RNLLKT--IPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 81 ~~~~~~~lp-~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~l---~n~~~~--ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
.+| ..|.++++|++|++++|+.. .+.+++.|+.+ +|.+.. +|..++.+++|++|++++|+|++
T Consensus 114 ------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 ------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp ------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 445 45899999999999999732 24444444444 666654 56788899999999999999997
Q ss_pred CCCCCch
Q 047084 150 DSPSPLS 156 (437)
Q Consensus 150 ~~p~~~~ 156 (437)
..|..+.
T Consensus 188 ~~~~~l~ 194 (635)
T 4g8a_A 188 IYCTDLR 194 (635)
T ss_dssp ECGGGGH
T ss_pred ccccccc
Confidence 6666553
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-18 Score=166.08 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=110.0
Q ss_pred cCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCc
Q 047084 18 GNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLT 96 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~ 96 (437)
..+++|++|+|++|.+..++ ..+.++++|++|++++|.+..+++ +..+++|++|++++|.+++ +| ..+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~------l~----~~~ 99 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE------LL----VGP 99 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE------EE----ECT
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc------cc----CCC
Confidence 44556666666666665444 456666666666666666555544 6666666666666666652 22 225
Q ss_pred cCcEEEeecCCh-----HhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCCCCCCCc-----hhhhhhcCCC
Q 047084 97 NLQKLCIIEADS-----EALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDADSPSPL-----SFKDALVHPE 165 (437)
Q Consensus 97 ~L~~L~l~~n~~-----~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p~~~-----~~~~~~l~~n 165 (437)
+|++|++++|+. ..+++|+.|...+|.+..++ ..+..+++|++|++++|.+++..|..+ ++..+.+++|
T Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 666666666652 22334444444455554443 345566666666666666664333222 3344455555
Q ss_pred CCCC---CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCc
Q 047084 166 QYRS---SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHD 242 (437)
Q Consensus 166 ~l~~---~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~ 242 (437)
.+.. ......++.|+|++|+++... .. +..+ .++..++++.|.++. ++..+.....
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~l~----------~~-~~~l---------~~L~~L~L~~N~l~~-l~~~~~~l~~ 238 (317)
T 3o53_A 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMG----------PE-FQSA---------AGVTWISLRNNKLVL-IEKALRFSQN 238 (317)
T ss_dssp CCCEEECCCCCTTCCEEECCSSCCCEEC----------GG-GGGG---------TTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred cCcccccccccccCCEEECCCCcCCcch----------hh-hccc---------CcccEEECcCCcccc-hhhHhhcCCC
Confidence 5511 111334566677777665211 10 1100 122233455555542 3455666778
Q ss_pred eEEEEcCCcEEE
Q 047084 243 FSVIDLENNYFL 254 (437)
Q Consensus 243 l~~l~l~~N~f~ 254 (437)
++.+++++|.+.
T Consensus 239 L~~L~l~~N~~~ 250 (317)
T 3o53_A 239 LEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECTTCCCB
T ss_pred CCEEEccCCCcc
Confidence 888888888876
No 76
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=142.81 Aligned_cols=131 Identities=11% Similarity=0.195 Sum_probs=100.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC--hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP--KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n 77 (437)
+++++++|.++++|..+. ..+++|+|++|.|..++ ..+..+++|++|++++|.++.+++ .|.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 478999999999998774 35689999999998764 348899999999999999998877 5999999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPS 153 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~ 153 (437)
.+++.. |..|..+++|++|++++|+... ..|..+..+++|++|+|++|+|++..|.
T Consensus 92 ~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 92 RLENVQ-----HKMFKGLESLKTLMLRSNRITC---------------VGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCCCC-----GGGGTTCSSCCEEECTTSCCCC---------------BCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred ccCccC-----HhHhcCCcCCCEEECCCCcCCe---------------ECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 998543 4568999999999999986221 1234445555555555555555543343
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=5.8e-17 Score=167.54 Aligned_cols=213 Identities=18% Similarity=0.126 Sum_probs=107.8
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhh-----------------cccCCCEEEccCCcccccchhhc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIG-----------------NLLGLETLDLKNTLVRELPVEIR 64 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~-----------------~l~~L~~L~l~~~~~~~lp~~~~ 64 (437)
+|+|++|.++.+|. .+++|++|+|++|+|+.+|..+. .+++|++|++++|.+..+|..
T Consensus 65 ~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~-- 139 (622)
T 3g06_A 65 TLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL-- 139 (622)
T ss_dssp EEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC--
T ss_pred EEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC--
Confidence 45555555555554 34455555555555544443000 334455555555555555543
Q ss_pred CCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeE
Q 047084 65 NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKA 140 (437)
Q Consensus 65 ~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L 140 (437)
+++|++|++++|++++ +|. .+.+|+.|++++|....+ .+|+.|...+|.+..+|.. +++|+.|
T Consensus 140 -l~~L~~L~Ls~N~l~~------l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L 206 (622)
T 3g06_A 140 -PPGLQELSVSDNQLAS------LPA---LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKL 206 (622)
T ss_dssp -CTTCCEEECCSSCCSC------CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred -CCCCCEEECcCCcCCC------cCC---ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEE
Confidence 3778888888888773 343 234566666666653332 3444444445555555542 3556666
Q ss_pred EeeCCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC--CCCCeEeechHHHhhhcccccceEE
Q 047084 141 RFRSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD--GTMPTIKFSKRIQDKLIKPWQNSVV 216 (437)
Q Consensus 141 ~l~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~--~~lp~l~l~~n~l~~l~~~~~~~l~ 216 (437)
++++|.++ .+|..+ ++..+.+++|++.. ......++.|+|++|+++..+. ..+..+.++.|.+..++..... .
T Consensus 207 ~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~--l 283 (622)
T 3g06_A 207 WAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIH--L 283 (622)
T ss_dssp ECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGG--S
T ss_pred ECcCCccc-ccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhh--c
Confidence 66666666 344332 34455556665522 1222344556666666653322 3445556666655544332211 1
Q ss_pred EEecCCCcCHHHHHHHHHh
Q 047084 217 VKLLGRNIGYKVLCNRLKV 235 (437)
Q Consensus 217 ~~l~~~~ls~n~l~~~l~~ 235 (437)
.++..++++.|.+.+..+.
T Consensus 284 ~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCEEECCSCCCCHHHHH
T ss_pred cccCEEEecCCCCCCcCHH
Confidence 2233344555555544444
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=3.5e-16 Score=145.72 Aligned_cols=147 Identities=22% Similarity=0.338 Sum_probs=121.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
++|++++|.+..++ .+.++++|++|++++|.+..+++. +.++++|++|++++|.+..+|+. ++.+++|++|++++|.
T Consensus 66 ~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 66 RYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp CEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence 68999999998874 789999999999999999877654 78899999999999988888876 7999999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHh---cccccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQ---LRNLLKTIPP-PLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~---l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~ 149 (437)
+++.. +..++.+++|+.|++++|+. ..+..+..|+. .+|.+..+|. .+..+++|++|++++|++.+
T Consensus 145 l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 145 LQSLP-----KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCccC-----HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 98542 44578999999999999972 22334444444 4677766664 57899999999999999998
Q ss_pred CCCC
Q 047084 150 DSPS 153 (437)
Q Consensus 150 ~~p~ 153 (437)
..|.
T Consensus 220 ~~~~ 223 (272)
T 3rfs_A 220 TCPG 223 (272)
T ss_dssp CTTT
T ss_pred cCcH
Confidence 7663
No 79
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=3.6e-16 Score=137.80 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=112.1
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh--hhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS--IGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n 77 (437)
+++++++|.++++|..+.. +|++|++++|.|+.+++. +..+++|++|++++|.++.+ |..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5799999999999987754 899999999999888753 88999999999998888877 567999999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSP 152 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p 152 (437)
++++.. |..|..+++|++|++++|+.. +..|..+..+++|++|+|++|++++..+
T Consensus 89 ~l~~~~-----~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEIS-----NKMFLGLHQLKTLNLYDNQIS---------------CVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEEC-----SSSSTTCTTCCEEECCSSCCC---------------EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccC-----HHHhcCCCCCCEEECCCCcCC---------------eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999543 556899999999999997532 3446788899999999999999997654
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=2.5e-16 Score=148.24 Aligned_cols=159 Identities=20% Similarity=0.271 Sum_probs=94.2
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.+..+| .+..+++|++|++++|++..+++ +.++++|++|++++|.++.+|. +..+++|++|++++|+++
T Consensus 49 ~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 49 DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCC
T ss_pred cEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCC
Confidence 46777777777764 36667777777777777766655 6777777777777776666554 777777777777777776
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP 154 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~ 154 (437)
+ + ..+..+++|+.|++++|.... +..+..|+.+ +|.+..++. +..+++|+.|++++|++++ +|
T Consensus 126 ~------~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~-- 194 (291)
T 1h6t_A 126 D------I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-- 194 (291)
T ss_dssp C------C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG--
T ss_pred C------C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch--
Confidence 3 2 246667777777777765322 1122222222 344444433 4444555555555555442 11
Q ss_pred chhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084 155 LSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 155 ~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~ 187 (437)
.......++.|++++|+++
T Consensus 195 --------------~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 195 --------------ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --------------GGTTCTTCSEEEEEEEEEE
T ss_pred --------------hhccCCCCCEEECcCCccc
Confidence 1112234566788888776
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1.1e-16 Score=146.02 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=135.4
Q ss_pred CCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCc-ccccch-hhcCCcCCcEEecee-ecccccc
Q 047084 8 APVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTL-VRELPV-EIRNLKRLRYLMVYQ-YNYTAGF 83 (437)
Q Consensus 8 n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~-~~~lp~-~~~~L~~L~~L~l~~-n~l~~~~ 83 (437)
+.++++|. +. .+|++|++++|++..+|+ .+.++++|++|++++|. ++.+|+ .|.++++|++|++++ |++++..
T Consensus 21 ~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 21 KDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 34888887 54 389999999999988876 78899999999999885 988887 589999999999999 9998432
Q ss_pred ccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCC---eEEeeCC-cCCCCCCCCc----
Q 047084 84 AAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTK---KARFRSH-EVDADSPSPL---- 155 (437)
Q Consensus 84 ~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~---~L~l~~N-~l~~~~p~~~---- 155 (437)
+..|.++++|++|++++|. +..+|. +..+++|+ +|++++| .+++..+..+
T Consensus 98 -----~~~f~~l~~L~~L~l~~n~----------------l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 98 -----PDALKELPLLKFLGIFNTG----------------LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp -----TTSEECCTTCCEEEEEEEC----------------CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred -----HHHhCCCCCCCEEeCCCCC----------------Cccccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 3568999999999999864 334565 67777787 9999999 9984333333
Q ss_pred hhh-hhhcCCCCCCC----CchhccceeeecCCCC-cccCCC-------CCCCeEeechHHHhhhcc
Q 047084 156 SFK-DALVHPEQYRS----SEDAEMEEEWDLEPGD-VTIGDD-------GTMPTIKFSKRIQDKLIK 209 (437)
Q Consensus 156 ~~~-~~~l~~n~l~~----~~~~~~~~~L~L~~n~-l~~~~~-------~~lp~l~l~~n~l~~l~~ 209 (437)
.+. .+.+++|++.. ......++.|++++|+ ++.... ..+..+.++.|.+..++.
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 566 78888998822 1122467889999995 874432 356677888877776554
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.3e-16 Score=161.12 Aligned_cols=175 Identities=16% Similarity=0.130 Sum_probs=117.6
Q ss_pred CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l 79 (437)
++|+|++|.++.++ ..|.++++|++|+|++|.+..+++ +..+++|++|++++|.++.+|.. ++|++|++++|.+
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l 111 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNI 111 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCC
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcC
Confidence 46888888887775 467888888888888888864444 77888888888888877776643 7788888888888
Q ss_pred ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---cccccc-CCchhh-cCCCCCeEEeeCCcCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKT-IPPPLA-ADRSTKKARFRSHEVDA 149 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~-ip~~~~-~l~~L~~L~l~~N~l~~ 149 (437)
++. +. ..+++|+.|++++|.. ..+..+..|+.+ +|.+.. .|..+. .+++|++|+|++|.|++
T Consensus 112 ~~~------~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 112 SRV------SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCE------EE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCC------Cc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 743 22 2457788888888872 223333333333 555543 455665 67888888888888874
Q ss_pred CCCC--CchhhhhhcCCCCCC----CCchhccceeeecCCCCccc
Q 047084 150 DSPS--PLSFKDALVHPEQYR----SSEDAEMEEEWDLEPGDVTI 188 (437)
Q Consensus 150 ~~p~--~~~~~~~~l~~n~l~----~~~~~~~~~~L~L~~n~l~~ 188 (437)
..+. ..++..+.+++|.+. .+.....++.|+|++|+++.
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence 3221 225566777777772 12233446778888888763
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=2.6e-16 Score=141.82 Aligned_cols=127 Identities=18% Similarity=0.301 Sum_probs=101.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~ 78 (437)
+.++++++.++++|..+. .+|+.|++++|.|..+|+ .+..+++|++|++++|.+..+ |..|.++++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 468899999999998775 689999999999987775 688899999999998888887 5679999999999999999
Q ss_pred ccccccccccccc-ccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084 79 YTAGFAAAKLHEG-FGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 79 l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~ 150 (437)
++ .+|.. |..+++|++|++++|.... ..|..+..+++|++|+|++|+|++.
T Consensus 92 l~------~l~~~~f~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 92 IT------ELPKSLFEGLFSLQLLLLNANKINC---------------LRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp CC------CCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CC------ccCHhHccCCCCCCEEECCCCCCCE---------------eCHHHcCCCCCCCEEECCCCcCCEE
Confidence 98 44544 7889999999999975321 1234566666777777777777643
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=169.61 Aligned_cols=250 Identities=15% Similarity=0.081 Sum_probs=127.4
Q ss_pred EEecCC-CC-CcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 3 LDLEDA-PV-DYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 3 L~L~~n-~l-~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++++++ .+ +.+|..+..+++|+.|++++|.+..+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|.+.
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSC
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccc
Confidence 344444 22 334555566666666666666666666655555 66666666555555554 34555555555555544
Q ss_pred cccccccccccccCCccCcEEEeecCC-------hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEAD-------SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~-------~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~ 150 (437)
+.. +. ..+++|+.|++++|. +..+..+..|+.+ +|.+..+|..+..+++|++|++++|.+++.
T Consensus 339 ~~~-----~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 339 NAF-----SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBC-----CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred ccc-----cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence 321 11 444555555555554 1222222222222 344444444455555555555555555533
Q ss_pred CCC-C----chhhhhhcCCCCC-----CCCchhccceeeecCCCCccc-------CCCCCCCeEeechHHHhhhcccccc
Q 047084 151 SPS-P----LSFKDALVHPEQY-----RSSEDAEMEEEWDLEPGDVTI-------GDDGTMPTIKFSKRIQDKLIKPWQN 213 (437)
Q Consensus 151 ~p~-~----~~~~~~~l~~n~l-----~~~~~~~~~~~L~L~~n~l~~-------~~~~~lp~l~l~~n~l~~l~~~~~~ 213 (437)
.|. . .++..+.++.|.+ ..+.....++.|++++|+++. .....+..+.++.|.+.+..+.+..
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 221 1 1333444455544 111223334555555555541 1113444455555544444221111
Q ss_pred eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhH
Q 047084 214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDA 263 (437)
Q Consensus 214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~ 263 (437)
...++..++++.|.+++..+..+.....++.+++++|.+....+...-.
T Consensus 492 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 492 -SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp -TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred -cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 0123444566777777766677888889999999999988666554444
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=8.9e-17 Score=153.21 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=140.0
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l 79 (437)
++|+|++|.++.+++ .+.++++|++|+|++|.+..+++ +..+++|++|++++|.++.+|. +++|++|++++|++
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l 111 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI 111 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCC
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCcc
Confidence 589999999988864 78999999999999999976554 8899999999999998887774 48999999999999
Q ss_pred ccccccccccccccCCccCcEEEeecCChH-----hH---hhccchHhcccccccCC-chh-hcCCCCCeEEeeCCcCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----AL---KELMKLRQLRNLLKTIP-PPL-AADRSTKKARFRSHEVDA 149 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~---~~L~~L~~l~n~~~~ip-~~~-~~l~~L~~L~l~~N~l~~ 149 (437)
++. +. ..+++|++|++++|... .+ ++|+.|...+|.+..++ ..+ ..+++|++|++++|.+++
T Consensus 112 ~~~------~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 112 SRV------SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SEE------EE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCc------Cc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 843 32 34678999999999732 23 33444444466666553 445 378999999999999984
Q ss_pred CCCCC---chhhhhhcCCCCCCC----CchhccceeeecCCCCcccCCC-----CCCCeEeechHHHh
Q 047084 150 DSPSP---LSFKDALVHPEQYRS----SEDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQD 205 (437)
Q Consensus 150 ~~p~~---~~~~~~~l~~n~l~~----~~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~ 205 (437)
. |.. .++..+.+++|++.. +.....++.|+|++|+++..+. ..+..+.++.|.+.
T Consensus 184 ~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 184 V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred c-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 3 332 366778888998822 2334456889999999984332 34455555555443
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=2.9e-16 Score=160.48 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=130.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|+|++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|.++.+|. +.+ +|++|++++|+++
T Consensus 62 ~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp SEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS
T ss_pred cEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC
Confidence 479999999999998774 78999999999999998 458999999999999998998 765 9999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc-
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL- 155 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~- 155 (437)
+ +|. .+++|+.|++++|....+ .+|..|...+|.++.+|. +. ++|+.|+|++|+|+ .+|. +
T Consensus 134 ~------lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~ 199 (571)
T 3cvr_A 134 M------LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VP 199 (571)
T ss_dssp C------CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred C------CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence 4 465 688999999999985433 355555555788888888 65 89999999999999 6776 4
Q ss_pred -hh-------hhhhcCCCCCCC----CchhccceeeecCCCCcc
Q 047084 156 -SF-------KDALVHPEQYRS----SEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 156 -~~-------~~~~l~~n~l~~----~~~~~~~~~L~L~~n~l~ 187 (437)
++ ..+.+++|++.. ......++.|+|++|+++
T Consensus 200 ~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 200 VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 34 556677777722 122334577888888876
No 87
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=4.4e-17 Score=172.07 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=105.4
Q ss_pred CCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccc
Q 047084 13 LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGF 92 (437)
Q Consensus 13 lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~ 92 (437)
.|..+..+..|+.|+|++|.+..+|..++++++|++|+|++|.+..+|..|++|++|++|+|++|.|+ .+|..|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~------~lp~~~ 289 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT------SLPAEL 289 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS------SCCSSG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC------ccChhh
Confidence 35567788888888888888888888888888888888888888888888888888888888888887 568888
Q ss_pred cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCchh-----hhhhcCCCCC
Q 047084 93 GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSF-----KDALVHPEQY 167 (437)
Q Consensus 93 ~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----~~~~l~~n~l 167 (437)
+.|++|++|+|++| .++.+|..|+.+++|++|+|++|.|++.+|..+.. ..+.++.|.+
T Consensus 290 ~~l~~L~~L~L~~N----------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN----------------MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp GGGTTCSEEECCSS----------------CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCCCEEECCCC----------------CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 88888888888875 35678988999999999999999999887776532 2234566665
Q ss_pred CCCchhccceeeecCCC
Q 047084 168 RSSEDAEMEEEWDLEPG 184 (437)
Q Consensus 168 ~~~~~~~~~~~L~L~~n 184 (437)
.. .....+..|+++.|
T Consensus 354 ~~-~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 354 EI-PLPHERRFIEINTD 369 (727)
T ss_dssp CC-CCCCC---------
T ss_pred cC-cCccccceeEeecc
Confidence 22 11223344566665
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=6e-17 Score=163.54 Aligned_cols=213 Identities=13% Similarity=0.105 Sum_probs=153.2
Q ss_pred CCcCCccccCCC----CCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccc
Q 047084 10 VDYLPEGVGNLF----NLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFA 84 (437)
Q Consensus 10 l~~lp~~~~~l~----~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~ 84 (437)
...+|..+..+. +|++|+|++|.+..++ ..+..+++|++|+|++|.+..+++ ++.+++|++|++++|.+++
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--- 94 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE--- 94 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE---
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC---
Confidence 345566665554 8999999999997665 689999999999999888877665 9999999999999999983
Q ss_pred cccccccccCCccCcEEEeecCCh-----HhHhhccchHhcccccccC-CchhhcCCCCCeEEeeCCcCCCCCCCCc---
Q 047084 85 AAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQLRNLLKTI-PPPLAADRSTKKARFRSHEVDADSPSPL--- 155 (437)
Q Consensus 85 ~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l~n~~~~i-p~~~~~l~~L~~L~l~~N~l~~~~p~~~--- 155 (437)
+|. .++|++|++++|.. ..+++|..|...+|.+..+ |..++.+++|++|+|++|.+++..|..+
T Consensus 95 ---l~~----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 95 ---LLV----GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp ---EEE----CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred ---CCC----CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 343 38999999999983 3345666666667777655 5678889999999999999997666543
Q ss_pred --hhhhhhcCCCCCCC---CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHH
Q 047084 156 --SFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC 230 (437)
Q Consensus 156 --~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~ 230 (437)
++..+.+++|.+.. ......++.|+|++|+++..++ . +.. ..++..+++++|.+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~-~~~---------l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP----------E-FQS---------AAGVTWISLRNNKLV 227 (487)
T ss_dssp TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG----------G-GGG---------GTTCSEEECTTSCCC
T ss_pred CCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH----------h-HcC---------CCCccEEEecCCcCc
Confidence 45567778888722 2234456778888888863211 0 110 012333445555555
Q ss_pred HHHHhcccCCCceEEEEcCCcEEE
Q 047084 231 NRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 231 ~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
+ ++..+.....+..+++++|.+.
T Consensus 228 ~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 228 L-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-ECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cchhhccCCCCCEEEcCCCCCc
Confidence 3 4555667788899999998876
No 89
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=3.4e-16 Score=151.91 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=105.6
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hh-cccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IG-NLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~-~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n 77 (437)
++++++++.++.+|..+. ..++.|+|++|+|..++.. +. ++++|++|+|++|.+..+++ .|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 468999999999998765 3589999999999877755 54 89999999999999998876 4899999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHh---cccccccCCchh----hcCCCCCeEEeeCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQ---LRNLLKTIPPPL----AADRSTKKARFRSH 145 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~---l~n~~~~ip~~~----~~l~~L~~L~l~~N 145 (437)
++++.. +..|..+++|+.|+|++|+. ..+..+..|+. .+|.+..+|..+ ..+++|+.|+|++|
T Consensus 99 ~l~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 99 HLHTLD-----EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred cCCcCC-----HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 998432 34588999999999999872 22333333333 356666666543 35666777777777
Q ss_pred cCC
Q 047084 146 EVD 148 (437)
Q Consensus 146 ~l~ 148 (437)
+|+
T Consensus 174 ~l~ 176 (361)
T 2xot_A 174 KLK 176 (361)
T ss_dssp CCC
T ss_pred CCC
Confidence 776
No 90
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=133.86 Aligned_cols=126 Identities=17% Similarity=0.297 Sum_probs=110.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNY 79 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l 79 (437)
+++++++|.++++|..+. .+|++|++++|.|..+|..+.++++|++|++++|.++.++.. |.++++|++|+|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 478999999999998764 589999999999999999999999999999999999988764 99999999999999999
Q ss_pred ccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084 80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~ 149 (437)
++.. |..|..+++|+.|++++|. +..+|. .+..+++|+.|+|++|++..
T Consensus 91 ~~i~-----~~~f~~l~~L~~L~L~~N~----------------l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIP-----PRTFDGLKSLRLLSLHGND----------------ISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCC-----TTTTTTCTTCCEEECCSSC----------------CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeC-----HHHhCCCCCCCEEECCCCC----------------CCeeChhhhhcCccccEEEeCCCCeec
Confidence 9543 5569999999999999874 344554 57789999999999999984
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=3.9e-16 Score=148.12 Aligned_cols=156 Identities=25% Similarity=0.327 Sum_probs=126.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.+..++. +.++++|++|++++|.+..++ .+..+++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus 66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 66 IGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC
Confidence 589999999999987 999999999999999998775 68999999999999999998876 999999999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP-- 152 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p-- 152 (437)
+. +. ++.+++|+.|++++|.... +..+..|+.+ +|.+..++. +..+++|++|++++|++++..|
T Consensus 143 ~~------~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~ 214 (308)
T 1h6u_A 143 NI------SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLA 214 (308)
T ss_dssp CC------GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGT
T ss_pred cC------cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccccc
Confidence 43 43 8899999999999998333 3334444433 677777775 8899999999999999995432
Q ss_pred CCchhhhhhcCCCCC
Q 047084 153 SPLSFKDALVHPEQY 167 (437)
Q Consensus 153 ~~~~~~~~~l~~n~l 167 (437)
...++..+.+++|.+
T Consensus 215 ~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTI 229 (308)
T ss_dssp TCTTCCEEEEEEEEE
T ss_pred CCCCCCEEEccCCee
Confidence 112455566777766
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.6e-16 Score=132.51 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=97.9
Q ss_pred CEEEecCCCCC--cCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc-cchhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE-LPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~n 77 (437)
++|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|++|++++|
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 46788888886 7777778888888888888888766 667778888888888777766 6666777888888888888
Q ss_pred ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCc----hhhcCCCCCeEEeeCCcCCCCCCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPP----PLAADRSTKKARFRSHEVDADSPS 153 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~----~~~~l~~L~~L~l~~N~l~~~~p~ 153 (437)
.+++.. .+..+..+++|+.|++++|. +..+|. .+..+++|++|++++|.+. .+|.
T Consensus 106 ~l~~~~----~~~~l~~l~~L~~L~l~~N~----------------l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 106 KLKDIS----TLEPLKKLECLKSLDLFNCE----------------VTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp SCCSSG----GGGGGSSCSCCCEEECCSSG----------------GGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCcch----hHHHHhcCCCCCEEEeeCCc----------------CcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 887431 12567788888888888764 333443 6778888999999999887 4554
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=1.8e-15 Score=137.13 Aligned_cols=130 Identities=26% Similarity=0.371 Sum_probs=113.8
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.+..+ |..|.++++|++|+|++|.|+.+|.. +..+++|++|++++|.++.+|.. |..+++|++|++++|
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 5899999999888 55789999999999999999988854 68899999999999999999876 789999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCCCCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDADSP 152 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p 152 (437)
+++ .+|..+..+++|++|++++|+ +..+| ..+..+++|+.|++++|+++..-+
T Consensus 123 ~l~------~lp~~~~~l~~L~~L~L~~N~----------------l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 123 KLT------ELPRGIERLTHLTHLALDQNQ----------------LKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCC------SCCTTGGGCTTCSEEECCSSC----------------CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccc------ccCcccccCCCCCEEECCCCc----------------CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 998 678889999999999999874 33445 457789999999999999996543
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.9e-15 Score=133.58 Aligned_cols=144 Identities=21% Similarity=0.315 Sum_probs=98.8
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
+.++.+++.+.++|..+ .++|++|++++|.+..+++. +.++++|++|++++|.++.+|.. |..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 35778888888888765 35899999999999877654 67899999999998888888775 6889999999999998
Q ss_pred cccccccccccccccCCccCcEEEeecCChHh-----Hhhc---cchHhcccccccCCch-hhcCCCCCeEEeeCCcCCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-----LKEL---MKLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-----~~~L---~~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~ 149 (437)
+++.. +..|..+++|++|++++|.... +..+ +.|...+|.+..+|.. +..+++|++|++++|++.+
T Consensus 88 l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 88 LQSLP-----NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCccC-----HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 88432 3447888999999998876221 2222 2222223444444432 4455555555555555554
Q ss_pred CC
Q 047084 150 DS 151 (437)
Q Consensus 150 ~~ 151 (437)
..
T Consensus 163 ~~ 164 (208)
T 2o6s_A 163 TC 164 (208)
T ss_dssp CT
T ss_pred CC
Confidence 33
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=1.6e-15 Score=156.47 Aligned_cols=137 Identities=22% Similarity=0.326 Sum_probs=82.8
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.+..+| .+..|++|+.|+|++|.|..+++ +..+++|++|+|++|.+..+| .+..|++|++|+|++|.++
T Consensus 46 ~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 46 DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp CCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC
T ss_pred CEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC
Confidence 35667777776665 46667777777777777766555 667777777777766666655 5667777777777777766
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
+ + ..+..+++|+.|+|++|.... +..+..|+.| +|.+..+++ +..+++|+.|+|++|+|+
T Consensus 123 ~------l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 123 D------I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp C------C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred C------C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 3 2 236667777777777765322 2222222222 344444433 555555555555555555
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=7.2e-16 Score=142.87 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=108.8
Q ss_pred EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084 3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG 82 (437)
Q Consensus 3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~ 82 (437)
+++++|.++.++ .+..+.+|++|++++|.+..+| .+..+++|++|++++|.++.+|+ +.++++|++|++++|++++
T Consensus 24 l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~- 99 (263)
T 1xeu_A 24 QNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN- 99 (263)
T ss_dssp HHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-
T ss_pred HHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-
Confidence 457778888776 6788888999999999888887 68888999999999888888887 8889999999999998884
Q ss_pred cccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCch
Q 047084 83 FAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLS 156 (437)
Q Consensus 83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 156 (437)
+|. +.. ++|+.|++++|+... +..+..|+.+ +|.+..+| .+..+++|+.|++++|++++. +
T Consensus 100 -----l~~-~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~---- 166 (263)
T 1xeu_A 100 -----LNG-IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G---- 166 (263)
T ss_dssp -----CTT-CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T----
T ss_pred -----cCc-ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H----
Confidence 343 222 888999998887332 2222222222 45555554 466667777777777776642 1
Q ss_pred hhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084 157 FKDALVHPEQYRSSEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 157 ~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~ 187 (437)
.+.....++.|++++|+++
T Consensus 167 ------------~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 ------------GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ------------TSTTCCCCCEEEEEEEEEE
T ss_pred ------------HhccCCCCCEEeCCCCccc
Confidence 1112233566788888876
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=6.8e-16 Score=137.70 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=119.4
Q ss_pred CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|++++|.++.+|.. +.++++|++|++++|++..+|.. +.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 5799999999988775 68999999999999999888754 67899999999999999988876 789999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCChH-----hHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
++++.. +..|..+++|++|++++|... .+..+..|+.+ +|.+ ...+++|+.|+++.|+++|
T Consensus 111 ~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 111 QLQSLP-----DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCCCCC-----TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTT
T ss_pred cCcccC-----HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCc
Confidence 998432 345789999999999999732 23344444443 4422 2456789999999999999
Q ss_pred CCCCCchhh
Q 047084 150 DSPSPLSFK 158 (437)
Q Consensus 150 ~~p~~~~~~ 158 (437)
.+|..++-.
T Consensus 180 ~ip~~~~~l 188 (208)
T 2o6s_A 180 VVRNSAGSV 188 (208)
T ss_dssp TBBCTTSSB
T ss_pred eeeccCccc
Confidence 999877543
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=6.4e-16 Score=146.73 Aligned_cols=165 Identities=14% Similarity=0.081 Sum_probs=124.9
Q ss_pred CCCCCcEEEeecccCc-ccChhh--hcccCCCEEEccCCcccc-cc----hhhcCCcCCcEEeceeeccccccccccccc
Q 047084 19 NLFNLHYLSVKNTKVK-IIPKSI--GNLLGLETLDLKNTLVRE-LP----VEIRNLKRLRYLMVYQYNYTAGFAAAKLHE 90 (437)
Q Consensus 19 ~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~l~~~~~~~-lp----~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~ 90 (437)
.+++|++|++++|.+. ..|..+ ..+++|++|++++|.++. .| ..+..+++|++|++++|.+++.. |.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~ 163 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS-----CE 163 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC-----TT
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh-----HH
Confidence 3567999999999995 677777 889999999999887764 23 23568999999999999998543 57
Q ss_pred cccCCccCcEEEeecCChH------------hHhhccchHhcccccccCCch----hhcCCCCCeEEeeCCcCCCCCCCC
Q 047084 91 GFGSLTNLQKLCIIEADSE------------ALKELMKLRQLRNLLKTIPPP----LAADRSTKKARFRSHEVDADSPSP 154 (437)
Q Consensus 91 ~~~~l~~L~~L~l~~n~~~------------~~~~L~~L~~l~n~~~~ip~~----~~~l~~L~~L~l~~N~l~~~~p~~ 154 (437)
.|+.+++|++|++++|+.. .+++|+.|...+|.+..+|.. +..+++|++|+|++|++++..|..
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 7899999999999999732 123344444446777666642 468899999999999999876654
Q ss_pred c-------hhhhhhcCCCCCCCC--chhccceeeecCCCCccc
Q 047084 155 L-------SFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVTI 188 (437)
Q Consensus 155 ~-------~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~~ 188 (437)
+ ++..+.+++|++... .....++.|+|++|+++.
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred HHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC
Confidence 3 566778888888321 112456778999999874
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2e-15 Score=145.88 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=133.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcc-cccchh-hcCCcCCcE-Eecee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLV-RELPVE-IRNLKRLRY-LMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~-~~lp~~-~~~L~~L~~-L~l~~ 76 (437)
++++.++++++++|..+. +++++|+|++|+|+.+|+ +|.++++|++|+|++|.+ +.+|.+ |.++++|++ +.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 467889999999998773 689999999999999986 588999999999997775 567764 789999876 56677
Q ss_pred eccccccccccccccccCCccCcEEEeecCChHhHhh--------ccchHhc-ccccccCCc-hhhcC-CCCCeEEeeCC
Q 047084 77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKE--------LMKLRQL-RNLLKTIPP-PLAAD-RSTKKARFRSH 145 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~--------L~~L~~l-~n~~~~ip~-~~~~l-~~L~~L~l~~N 145 (437)
|++++.. |..|..+++|++|++++|+...++. +..|... ++.+..+|. .+..+ ..++.|+|++|
T Consensus 90 N~l~~l~-----~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 90 NNLLYIN-----PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp TTCCEEC-----TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred CcccccC-----chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 8888432 5668999999999999998443322 1222222 245666764 45555 46899999999
Q ss_pred cCCCCCCCC-c---hhhhhhcC-CCCCC-----CCchhccceeeecCCCCcccCCC
Q 047084 146 EVDADSPSP-L---SFKDALVH-PEQYR-----SSEDAEMEEEWDLEPGDVTIGDD 191 (437)
Q Consensus 146 ~l~~~~p~~-~---~~~~~~l~-~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~ 191 (437)
+|+ .+|.. + ++..+.+. .|.+. .+.....++.|||++|+++..+.
T Consensus 165 ~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp CCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 999 45543 3 45566665 46662 23445567889999999985443
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=2.9e-15 Score=138.79 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=116.8
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.++.+| .+..+++|++|+|++|+|..+|+ +.++++|++|++++|.++.+|.... ++|++|++++|+++
T Consensus 44 ~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 44 QNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELR 119 (263)
T ss_dssp SEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCS
T ss_pred cEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccC
Confidence 57999999999998 78999999999999999988877 9999999999999999999887443 99999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~ 150 (437)
+ ++ .+..+++|+.|++++|+... +..+..|+.+ +|.+..+ ..+..+++|+.|++++|++++.
T Consensus 120 ~------~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 120 D------TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp B------SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred C------Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 4 34 58899999999999998433 3333334333 6777777 6788999999999999999853
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=3.5e-15 Score=140.38 Aligned_cols=138 Identities=23% Similarity=0.304 Sum_probs=117.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.++.++. +.++++|++|++++|.+..+|. +..+++|++|++++|.++.++ .+..+++|++|++++|+++
T Consensus 71 ~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 71 TKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred CEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC
Confidence 589999999999977 9999999999999999988754 899999999999999998884 6899999999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
+ + ..+..+++|+.|++++|.... +..+..|+.+ +|.+..+|. +..+++|+.|++++|+++.
T Consensus 148 ~------~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 148 D------I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C------C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred c------c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 4 3 468899999999999998332 3344444443 778888874 8899999999999999984
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=5.4e-15 Score=124.48 Aligned_cols=122 Identities=19% Similarity=0.150 Sum_probs=79.2
Q ss_pred CEEEecCCCCC--cCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc-cchhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE-LPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~n 77 (437)
++|++++|.++ .+|..+..+++|++|++++|.+..+ ..++++++|++|++++|.++. +|..++.+++|++|++++|
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 45677777776 6666667777777777777777655 566677777777777666665 5665666777777777777
Q ss_pred ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCc----hhhcCCCCCeEEee
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPP----PLAADRSTKKARFR 143 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~----~~~~l~~L~~L~l~ 143 (437)
.+++. ..+..++.+++|++|++++|.. ..+|. .+..+++|+.|+++
T Consensus 99 ~i~~~----~~~~~~~~l~~L~~L~l~~N~l----------------~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 99 KIKDL----STIEPLKKLENLKSLDLFNCEV----------------TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCCSH----HHHGGGGGCTTCCEEECTTCGG----------------GGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCCh----HHHHHHhhCCCCCEEeCcCCcc----------------cchHHHHHHHHHHCCCcccccCC
Confidence 77632 1125566777777777776542 22332 45666777777665
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=1.7e-15 Score=147.13 Aligned_cols=234 Identities=12% Similarity=0.077 Sum_probs=142.7
Q ss_pred EEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccC-----hhhhccc-CCCEEEccCCccccc-chhhcCC-----cC
Q 047084 2 VLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIP-----KSIGNLL-GLETLDLKNTLVREL-PVEIRNL-----KR 68 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~L-----~~ 68 (437)
+++++.|.++...+. +....+|++|+|++|.++..+ ..+.+++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567888888655344 455556888888888887665 4566777 788888887777765 3345554 88
Q ss_pred CcEEeceeeccccccccccccccccCC-ccCcEEEeecCChHh-----H--------hhccchHhcccccc-----cCCc
Q 047084 69 LRYLMVYQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEADSEA-----L--------KELMKLRQLRNLLK-----TIPP 129 (437)
Q Consensus 69 L~~L~l~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~~~~-----~--------~~L~~L~~l~n~~~-----~ip~ 129 (437)
|++|++++|.+++..+ ..+...+..+ ++|++|++++|.... + .+|+.|...+|.++ .++.
T Consensus 82 L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHH-HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8888888888875431 1122234444 788888888887221 1 13444444456555 3344
Q ss_pred hhhcCC-CCCeEEeeCCcCCCCCCCC---------chhhhhhcCCCCCCCC------c---h-hccceeeecCCCCcccC
Q 047084 130 PLAADR-STKKARFRSHEVDADSPSP---------LSFKDALVHPEQYRSS------E---D-AEMEEEWDLEPGDVTIG 189 (437)
Q Consensus 130 ~~~~l~-~L~~L~l~~N~l~~~~p~~---------~~~~~~~l~~n~l~~~------~---~-~~~~~~L~L~~n~l~~~ 189 (437)
.+..++ +|++|+|++|++++..+.. -++..+.+++|.+... . . ...++.|+|++|+++..
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 555555 8888888888887544321 1455566777776220 0 0 12467788888888622
Q ss_pred C----------CCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084 190 D----------DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL 254 (437)
Q Consensus 190 ~----------~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~ 254 (437)
. ...+..+.++.|.+..+ +.. ....+...+.....++.+++++|.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i-----------------~~~-~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNM-----------------SKE-QCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTC-----------------CHH-HHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCcccc-----------------CHH-HHHHHHHHhccCCceEEEecCCCcCC
Confidence 1 12233333333332211 111 12456677888899999999999865
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=2.9e-15 Score=145.39 Aligned_cols=144 Identities=23% Similarity=0.322 Sum_probs=120.6
Q ss_pred CEEEecCCCCCcCCcc-cc-CCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEecee
Q 047084 1 KVLDLEDAPVDYLPEG-VG-NLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~-~~-~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~ 76 (437)
++|+|++|+|+.++.. +. ++.+|++|+|++|+|..++ ..|.++++|++|+|++|.+..+|.. |.++++|++|+|++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence 5799999999999775 55 8999999999999998776 5689999999999999999998875 89999999999999
Q ss_pred eccccccccccccccccCCccCcEEEeecCChHh-----------HhhccchHhcccccccCC-chhhcCCC--CCeEEe
Q 047084 77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-----------LKELMKLRQLRNLLKTIP-PPLAADRS--TKKARF 142 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-----------~~~L~~L~~l~n~~~~ip-~~~~~l~~--L~~L~l 142 (437)
|++++.. |..|..+++|+.|+|++|.... +++|..|...+|.+..+| ..+..++. |+.|+|
T Consensus 122 N~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 122 NHIVVVD-----RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp SCCCEEC-----TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred CcccEEC-----HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 9998543 6779999999999999998322 334444554578888888 46777876 488999
Q ss_pred eCCcCCC
Q 047084 143 RSHEVDA 149 (437)
Q Consensus 143 ~~N~l~~ 149 (437)
++|++.-
T Consensus 197 ~~N~~~C 203 (361)
T 2xot_A 197 HNNPLEC 203 (361)
T ss_dssp CSSCEEC
T ss_pred cCCCccC
Confidence 9999983
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=9.5e-15 Score=129.15 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=112.6
Q ss_pred ccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCc
Q 047084 17 VGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLT 96 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~ 96 (437)
...+++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+++. .|..++.++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSD-----KIPNLSGLT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGG-----GSCCCTTCT
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcc-----cChhhcCCC
Confidence 367889999999999999888 7999999999999988777665 688999999999999999853 377799999
Q ss_pred cCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCc-CCCCCCCC---chhhhhhcCCCCCCC---
Q 047084 97 NLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHE-VDADSPSP---LSFKDALVHPEQYRS--- 169 (437)
Q Consensus 97 ~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~-l~~~~p~~---~~~~~~~l~~n~l~~--- 169 (437)
+|++|++++|... ...|..+..+++|++|++++|. ++ .+|.. .++..+.+++|++..
T Consensus 113 ~L~~L~Ls~n~i~---------------~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~~~ 176 (197)
T 4ezg_A 113 SLTLLDISHSAHD---------------DSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYRG 176 (197)
T ss_dssp TCCEEECCSSBCB---------------GGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCCTT
T ss_pred CCCEEEecCCccC---------------cHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcChHH
Confidence 9999999997532 2345677889999999999998 65 55521 145566677777622
Q ss_pred CchhccceeeecCCCCcc
Q 047084 170 SEDAEMEEEWDLEPGDVT 187 (437)
Q Consensus 170 ~~~~~~~~~L~L~~n~l~ 187 (437)
......++.|++++|++.
T Consensus 177 l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGGCSSCCEEEECBC---
T ss_pred hccCCCCCEEEeeCcccC
Confidence 222334566777777764
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=9.1e-15 Score=154.40 Aligned_cols=102 Identities=26% Similarity=0.352 Sum_probs=97.2
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|+|++|.+..+|..++++++|++|+|++|.|..+|..|++|++|++|+|++|.++.+|..|++|++|++|+|++|.|+
T Consensus 227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC
T ss_pred cEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCCh
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADS 108 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~ 108 (437)
.+|..|+.+++|++|+|++|.+
T Consensus 307 ------~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 307 ------TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ------CCCSSTTSCTTCCCEECTTSCC
T ss_pred ------ccChhhhcCCCccEEeCCCCcc
Confidence 6788899999999999999983
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=3e-14 Score=123.57 Aligned_cols=129 Identities=20% Similarity=0.328 Sum_probs=108.6
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
+.+++++|.++.+|..+. ++|+.|++++|++..+|+ .+.++++|++|++++|.++.+|.. +.++++|++|++++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 468999999999997654 689999999999987775 468899999999999999999876 7999999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCch-hhcCCCCCeEEeeCCcCCCCCC
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDADSP 152 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~~~p 152 (437)
+++.. +..+..+++|++|++++|. +..+|.. +..+++|++|++++|++++..|
T Consensus 88 l~~~~-----~~~~~~l~~L~~L~l~~N~----------------l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLP-----NGVFDKLTQLKELALDTNQ----------------LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCC-----TTTTTTCTTCCEEECCSSC----------------CSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccC-----HHHhhCCcccCEEECcCCc----------------ceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99542 3457899999999999864 3345544 5779999999999999997544
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.2e-14 Score=126.14 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=42.4
Q ss_pred ccCCCCCcEEEeecccCcccChhhhccc-CCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccccc-ccC
Q 047084 17 VGNLFNLHYLSVKNTKVKIIPKSIGNLL-GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGS 94 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~-~~~ 94 (437)
+.++.+|+.|++++|.+..+|. +..+. +|++|++++|.++.+ +.+..+++|++|++++|.++ .+|.. +..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~------~~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC------RIGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC------EECSCHHHH
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc------ccCcchhhc
Confidence 3445555555555555554432 33333 555555555555554 34555555555555555555 22322 255
Q ss_pred CccCcEEEeecCC
Q 047084 95 LTNLQKLCIIEAD 107 (437)
Q Consensus 95 l~~L~~L~l~~n~ 107 (437)
+++|++|++++|.
T Consensus 87 l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 87 LPDLTELILTNNS 99 (176)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEECCCCc
Confidence 5555555555543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=5.4e-15 Score=151.13 Aligned_cols=145 Identities=22% Similarity=0.321 Sum_probs=98.5
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|+|++|.|+.+| ..+++|++|+|++|.|+.+|. +.+ +|++|++++|.++.+|. .+++|++|++++|.++
T Consensus 83 ~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 83 TVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp SEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred CEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccC
Confidence 47888888888887 446788888888888877777 554 78888888777777777 5778888888888877
Q ss_pred cccccccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCC-------CeEEeeCCcCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRST-------KKARFRSHEVDA 149 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L-------~~L~l~~N~l~~ 149 (437)
+ +|. .+++|++|++++|....+ .+|..|...+|.+..+|. +.. +| +.|+|++|+|+
T Consensus 154 ~------lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 154 M------LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp C------CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-
T ss_pred c------CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-
Confidence 3 344 456777777777763333 244444444666667776 443 55 77777777777
Q ss_pred CCCCCc----hhhhhhcCCCCC
Q 047084 150 DSPSPL----SFKDALVHPEQY 167 (437)
Q Consensus 150 ~~p~~~----~~~~~~l~~n~l 167 (437)
.+|..+ ++..+.+++|.+
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSC
T ss_pred ecCHHHhcCCCCCEEEeeCCcC
Confidence 566543 344556677766
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=9.4e-16 Score=147.04 Aligned_cols=180 Identities=10% Similarity=0.042 Sum_probs=125.2
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCc-c-cChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVK-I-IPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~n 77 (437)
++|++++|.++..+..+.++++|++|++++|.+. . +|..+..+++|++|++++|.++ ..|..++.+++|++|++++|
T Consensus 73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 4678888888777667778899999999999885 3 7777888999999999976665 56777888999999999988
Q ss_pred -ccccccccccccccccCCccCcEEEeecC-Ch------HhHhhcc-chHhc---ccc--c--ccCCchhhcCCCCCeEE
Q 047084 78 -NYTAGFAAAKLHEGFGSLTNLQKLCIIEA-DS------EALKELM-KLRQL---RNL--L--KTIPPPLAADRSTKKAR 141 (437)
Q Consensus 78 -~l~~~~~~~~lp~~~~~l~~L~~L~l~~n-~~------~~~~~L~-~L~~l---~n~--~--~~ip~~~~~l~~L~~L~ 141 (437)
.+++. .++..+..+++|++|++++| .. ..+..+. .|+.+ ++. + ..+|..+..+++|++|+
T Consensus 153 ~~l~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 153 SGFSEF----ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp BSCCHH----HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCHH----HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 56632 24666788889999999988 52 2233444 44444 442 2 45666777888999999
Q ss_pred eeCCc-CCCCCCCCc----hhhhhhcCCCC-CC-----CCchhccceeeecCCC
Q 047084 142 FRSHE-VDADSPSPL----SFKDALVHPEQ-YR-----SSEDAEMEEEWDLEPG 184 (437)
Q Consensus 142 l~~N~-l~~~~p~~~----~~~~~~l~~n~-l~-----~~~~~~~~~~L~L~~n 184 (437)
+++|. +++..+..+ ++..+.+++|. +. .+.....++.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99998 664444333 44555666663 31 1222334566777776
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=2.5e-15 Score=147.06 Aligned_cols=230 Identities=13% Similarity=0.166 Sum_probs=138.4
Q ss_pred CcCCccccCCCCCcEEEeecccCcc-----cChhhhcccCCCEEEccCCccc----ccchhh-------cCCcCCcEEec
Q 047084 11 DYLPEGVGNLFNLHYLSVKNTKVKI-----IPKSIGNLLGLETLDLKNTLVR----ELPVEI-------RNLKRLRYLMV 74 (437)
Q Consensus 11 ~~lp~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~~~~~----~lp~~~-------~~L~~L~~L~l 74 (437)
..++..+..+++|++|+|++|.++. ++..+..+++|++|++++|.+. .+|..+ ..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4556667778889999999888853 3344667888999988865444 345444 68888999999
Q ss_pred eeeccccccccccccccccCCccCcEEEeecCChH-----hHh----hc---------cchHhc---ccccc--cCC---
Q 047084 75 YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALK----EL---------MKLRQL---RNLLK--TIP--- 128 (437)
Q Consensus 75 ~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~----~L---------~~L~~l---~n~~~--~ip--- 128 (437)
++|.+++.. ...+|..+..+++|++|++++|... .+. .+ ..|+.+ +|.++ .+|
T Consensus 102 s~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHH-HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 998887421 1135677888888999999888732 121 11 333333 55553 344
Q ss_pred chhhcCCCCCeEEeeCCcCC--C-------CCCCCchhhhhhcCCCCCC-----C----CchhccceeeecCCCCcccCC
Q 047084 129 PPLAADRSTKKARFRSHEVD--A-------DSPSPLSFKDALVHPEQYR-----S----SEDAEMEEEWDLEPGDVTIGD 190 (437)
Q Consensus 129 ~~~~~l~~L~~L~l~~N~l~--~-------~~p~~~~~~~~~l~~n~l~-----~----~~~~~~~~~L~L~~n~l~~~~ 190 (437)
..+..+++|++|++++|.++ | .+....++..+.++.|.+. . +.....++.|+|++|+++..
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~- 259 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR- 259 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH-
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh-
Confidence 45678889999999999887 2 1222234556666777661 0 11223456677777776511
Q ss_pred CCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHH----HHHhcc-cCCCceEEEEcCCcEEE
Q 047084 191 DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCN----RLKVMW-HQIHDFSVIDLENNYFL 254 (437)
Q Consensus 191 ~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~----~l~~~w-~~~~~l~~l~l~~N~f~ 254 (437)
.... ++.........++..+++++|.+.. .++... ...+.++.+++++|.+.
T Consensus 260 ---------~~~~---l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 260 ---------GAAA---VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp ---------HHHH---HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ---------hHHH---HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 0000 0110000001123334455555544 244443 55688999999999876
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=1.7e-15 Score=148.41 Aligned_cols=187 Identities=12% Similarity=0.095 Sum_probs=125.0
Q ss_pred CEEEecCCCCCcC-----CccccCCCCCcEEEeecccCc----ccChhh-------hcccCCCEEEccCCcccc-----c
Q 047084 1 KVLDLEDAPVDYL-----PEGVGNLFNLHYLSVKNTKVK----IIPKSI-------GNLLGLETLDLKNTLVRE-----L 59 (437)
Q Consensus 1 ~~L~L~~n~l~~l-----p~~~~~l~~L~~L~L~~n~l~----~lp~~~-------~~l~~L~~L~l~~~~~~~-----l 59 (437)
++|+|++|.++.. +..+.++++|++|+|++|.+. .+|..+ ..+++|++|++++|.++. +
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 5788888887543 334668888999999887543 445444 578889999998777765 7
Q ss_pred chhhcCCcCCcEEeceeeccccccccccccccccCC---------ccCcEEEeecCChH---------hHhhccchHhc-
Q 047084 60 PVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSL---------TNLQKLCIIEADSE---------ALKELMKLRQL- 120 (437)
Q Consensus 60 p~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l---------~~L~~L~l~~n~~~---------~~~~L~~L~~l- 120 (437)
|..+.++++|++|+|++|.+++.. ...++..+..+ ++|++|++++|+.. .+..+..|+.+
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGLGPQA-GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHH-HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhCCCCCEEECcCCCCCHHH-HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 777888889999999998886321 11233444444 78889998888732 23334444444
Q ss_pred --ccccc------cCCchhhcCCCCCeEEeeCCcCC----CCCCC----CchhhhhhcCCCCCCCC------ch-----h
Q 047084 121 --RNLLK------TIPPPLAADRSTKKARFRSHEVD----ADSPS----PLSFKDALVHPEQYRSS------ED-----A 173 (437)
Q Consensus 121 --~n~~~------~ip~~~~~l~~L~~L~l~~N~l~----~~~p~----~~~~~~~~l~~n~l~~~------~~-----~ 173 (437)
+|.++ .+|..+..+++|++|+|++|.++ +.+|. ..++..+.+++|.+... .. .
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 45554 23346778888999999999885 23332 23566777888887321 11 3
Q ss_pred ccceeeecCCCCccc
Q 047084 174 EMEEEWDLEPGDVTI 188 (437)
Q Consensus 174 ~~~~~L~L~~n~l~~ 188 (437)
..++.|+|++|+++.
T Consensus 274 ~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 274 IGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCCCEEECCSSCCBH
T ss_pred CCeEEEECcCCcCCH
Confidence 446778999998873
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=4.2e-14 Score=145.94 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=117.3
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|+|++|.+..+|+ +.++++|+.|+|++|.|..+| .+..+++|++|+|++|.+..+| .+..|++|+.|+|++|.++
T Consensus 68 ~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 68 TKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred CEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC
Confidence 579999999999976 999999999999999998876 7899999999999999988875 5899999999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCChHh---HhhccchHh---cccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQ---LRNLLKTIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~---l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
+ + ..+..+++|+.|+|++|.... +..+..|+. .+|.+..+| .+..+++|+.|+|++|++++
T Consensus 145 ~------l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 145 D------I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp C------C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred C------c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 4 3 468899999999999998332 333444443 367777775 68999999999999999985
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=6.7e-14 Score=143.44 Aligned_cols=107 Identities=19% Similarity=0.308 Sum_probs=71.6
Q ss_pred CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEE
Q 047084 22 NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL 101 (437)
Q Consensus 22 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L 101 (437)
.|+.|+|++|.|+.+|. ++++++|++|++++|.++.+|..+++|++|++|+|++|.++ .+| .++.+++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~------~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE------NVD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC------CCG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC------CCc-ccCCCCCCcEE
Confidence 36677777777766665 66777777777776666677777777777777777777776 335 56677777777
Q ss_pred EeecCChHhHhhccchHhcccccccC--CchhhcCCCCCeEEeeCCcCCCCCC
Q 047084 102 CIIEADSEALKELMKLRQLRNLLKTI--PPPLAADRSTKKARFRSHEVDADSP 152 (437)
Q Consensus 102 ~l~~n~~~~~~~L~~L~~l~n~~~~i--p~~~~~l~~L~~L~l~~N~l~~~~p 152 (437)
++++|+ +..+ |..++.+++|+.|+|++|++++..|
T Consensus 514 ~Ls~N~----------------l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 514 LLCNNR----------------LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ECCSSC----------------CCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ECCCCC----------------CCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 776653 2223 6666777777777777777775433
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=4e-14 Score=127.43 Aligned_cols=128 Identities=20% Similarity=0.320 Sum_probs=112.9
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|+|++|.|+.+|. .|.++++|++|+|++|+|..+ |..|.++++|++|+|++|.++.+|.. |.++++|++|+|++|
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence 579999999999976 689999999999999999765 67899999999999999999999987 789999999999999
Q ss_pred ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCC
Q 047084 78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~ 149 (437)
++++.. |..|..+++|+.|++++|. +..++ ..+..+++|++|+|++|++..
T Consensus 115 ~l~~~~-----~~~~~~l~~L~~L~L~~N~----------------l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 115 KINCLR-----VDAFQDLHNLNLLSLYDNK----------------LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCC-----TTTTTTCTTCCEEECCSSC----------------CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEeC-----HHHcCCCCCCCEEECCCCc----------------CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999654 6779999999999999975 33344 457889999999999999984
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=6e-14 Score=123.46 Aligned_cols=104 Identities=20% Similarity=0.313 Sum_probs=93.4
Q ss_pred CEEEecCCCCCcCCcc--ccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEecee
Q 047084 1 KVLDLEDAPVDYLPEG--VGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~--~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~ 76 (437)
++|++++|.++.++.. +.++++|++|+|++|+|..+ |..+.++++|++|++++|.++.++.. |.++++|++|++++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 5799999999999764 89999999999999999765 67899999999999999999888775 89999999999999
Q ss_pred eccccccccccccccccCCccCcEEEeecCChH
Q 047084 77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE 109 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~ 109 (437)
|++++.. |..|..+++|++|++++|...
T Consensus 112 N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 112 NQISCVM-----PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCEEC-----TTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCeeC-----HHHhhcCCCCCEEEeCCCCcc
Confidence 9999653 778999999999999999843
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=1.2e-13 Score=133.26 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=116.7
Q ss_pred CEEEecCCCCCcCCc-cccCCCCCcEEEeecccC-cccCh-hhhcccCCCEEE-ccCCcccccch-hhcCCcCCcEEece
Q 047084 1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKV-KIIPK-SIGNLLGLETLD-LKNTLVRELPV-EIRNLKRLRYLMVY 75 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l-~~lp~-~~~~l~~L~~L~-l~~~~~~~lp~-~~~~L~~L~~L~l~ 75 (437)
++|+|++|+|+.+|+ .|.+|++|++|+|++|++ +.+|. .|.++++|+++. +++|.+..+|+ .|.++++|++|+++
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 579999999999987 589999999999999998 56774 577899988754 55888888865 58999999999999
Q ss_pred eeccccccccccccccccCCccCcEEEeecCC------hHhHhh----ccchHhcccccccCCchhhcCCCCCeEEeeC-
Q 047084 76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKE----LMKLRQLRNLLKTIPPPLAADRSTKKARFRS- 144 (437)
Q Consensus 76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~----L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~- 144 (437)
+|.+++.. +..+....++..|++.++. ...+.. +..|..-+|.+..+|.......+|++|++++
T Consensus 113 ~n~l~~~~-----~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 113 NTGIKHLP-----DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EECCSSCC-----CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred ccccccCC-----chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 99998432 2334556667777776543 122222 3334444677777777666667788888875
Q ss_pred CcCCCCCCCC-c----hhhhhhcCCCCC
Q 047084 145 HEVDADSPSP-L----SFKDALVHPEQY 167 (437)
Q Consensus 145 N~l~~~~p~~-~----~~~~~~l~~n~l 167 (437)
|.++ .+|.. + ++..+.+++|++
T Consensus 188 n~l~-~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 188 NNLE-ELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp TTCC-CCCTTTTTTEECCSEEECTTSCC
T ss_pred Cccc-CCCHHHhccCcccchhhcCCCCc
Confidence 4454 56643 2 456677778877
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=7.3e-14 Score=125.72 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=113.4
Q ss_pred CEEEecCCCCCcCCc--cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEecee
Q 047084 1 KVLDLEDAPVDYLPE--GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQ 76 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~ 76 (437)
++|+|++|.++.++. .|.++++|++|+|++|.|..+++ .|.++++|++|++++|.+..+|.. |.++++|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 579999999998843 47899999999999999987765 799999999999999999988775 89999999999999
Q ss_pred eccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCC
Q 047084 77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADS 151 (437)
Q Consensus 77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~ 151 (437)
|++++.. |..|..+++|++|++++|+.. +..|..+..+++|++|+|++|+++..-
T Consensus 115 N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 115 NRITCVG-----NDSFIGLSSVRLLSLYDNQIT---------------TVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCBC-----TTSSTTCTTCSEEECTTSCCC---------------CBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CcCCeEC-----HhHcCCCccCCEEECCCCcCC---------------EECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9999653 677999999999999987422 223678889999999999999999643
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=120.89 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=92.6
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~ 78 (437)
++|+|++|.++.+|..|.++.+|++|+|++|.|..++ ..|.++++|++|++++|.+..+|+ .|.++++|++|+|++|.
T Consensus 34 ~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 5799999999999999999999999999999998776 568999999999999999998877 49999999999999999
Q ss_pred cccccccccccc-cccCCccCcEEEeecCCh
Q 047084 79 YTAGFAAAKLHE-GFGSLTNLQKLCIIEADS 108 (437)
Q Consensus 79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~ 108 (437)
+++ +|. .|..+++|+.|++++|..
T Consensus 114 l~~------~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 114 ISV------VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCB------CCTTTTTTCTTCCEEECCSSCE
T ss_pred CCe------eChhhhhcCccccEEEeCCCCe
Confidence 994 454 588999999999999974
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=7.7e-16 Score=154.18 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=88.2
Q ss_pred CEEEecCCCCCcC-Cccc-cCCC----CCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccccc-chhh-----
Q 047084 1 KVLDLEDAPVDYL-PEGV-GNLF----NLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVREL-PVEI----- 63 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~-~~l~----~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~l-p~~~----- 63 (437)
++|+|++|.++.. +..+ ..+. +|++|++++|.++ .++..+..+++|++|++++|.++.. +..+
T Consensus 59 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 4678888877542 2233 3344 5888888888775 3566777778888888886666532 2212
Q ss_pred cCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHh-----Hh--------hccchHhccccccc----
Q 047084 64 RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-----LK--------ELMKLRQLRNLLKT---- 126 (437)
Q Consensus 64 ~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-----~~--------~L~~L~~l~n~~~~---- 126 (437)
..+++|++|++++|.+++.. ...++..+..+++|++|++++|.... +. +|+.|..-+|.++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAAS-CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp STTCCCCEEECTTSCCBGGG-HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred cCCCcceEEECCCCCCCHHH-HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 23556788888777776432 12345556667777777777776211 11 33333333444443
Q ss_pred -CCchhhcCCCCCeEEeeCCcCC
Q 047084 127 -IPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 127 -ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
++..+..+++|++|++++|.++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHHhCCCccEEeccCCcCC
Confidence 4555666677777777777765
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2e-13 Score=117.69 Aligned_cols=101 Identities=19% Similarity=0.316 Sum_probs=87.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
+++++++|.++++|..+. .+|++|+|++|.|..+ |..|.++++|++|++++|.+..+|+. |.++++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 478999999999998774 7899999999999877 56688999999999999999999886 6899999999999999
Q ss_pred cccccccccccccccCCccCcEEEeecCCh
Q 047084 79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS 108 (437)
Q Consensus 79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~ 108 (437)
+++.. +..|..+++|++|++++|..
T Consensus 90 l~~~~-----~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIP-----RGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCC-----TTTTTTCTTCCEEECCSSCB
T ss_pred cCEeC-----HHHhcCCCCCCEEEeCCCCC
Confidence 98432 34588999999999999974
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.4e-14 Score=140.60 Aligned_cols=186 Identities=11% Similarity=0.107 Sum_probs=133.3
Q ss_pred CEEEecCCCCCcCC-----ccccCCC-CCcEEEeecccCccc-Chhhhcc-----cCCCEEEccCCcccccchh-----h
Q 047084 1 KVLDLEDAPVDYLP-----EGVGNLF-NLHYLSVKNTKVKII-PKSIGNL-----LGLETLDLKNTLVRELPVE-----I 63 (437)
Q Consensus 1 ~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~L~~n~l~~l-p~~~~~l-----~~L~~L~l~~~~~~~lp~~-----~ 63 (437)
++|||++|.++..+ ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|++++|.++..+.. +
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 58999999998886 4577888 899999999999754 4667665 9999999998888866543 4
Q ss_pred cCC-cCCcEEeceeeccccccccccccccccCC-ccCcEEEeecCChH-----hH--------hhccchHhcccccccCC
Q 047084 64 RNL-KRLRYLMVYQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEADSE-----AL--------KELMKLRQLRNLLKTIP 128 (437)
Q Consensus 64 ~~L-~~L~~L~l~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~~~-----~~--------~~L~~L~~l~n~~~~ip 128 (437)
..+ ++|++|++++|.+++.. ...+...+..+ ++|++|++++|... .+ .+|+.|...+|.++...
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 555 89999999999998543 11222334453 69999999999843 22 24555555567775554
Q ss_pred -c----hhhcC-CCCCeEEeeCCcCCCC----CCCC-----chhhhhhcCCCCCCCC---------chhccceeeecCCC
Q 047084 129 -P----PLAAD-RSTKKARFRSHEVDAD----SPSP-----LSFKDALVHPEQYRSS---------EDAEMEEEWDLEPG 184 (437)
Q Consensus 129 -~----~~~~l-~~L~~L~l~~N~l~~~----~p~~-----~~~~~~~l~~n~l~~~---------~~~~~~~~L~L~~n 184 (437)
. .+... ++|++|+|++|.|++. ++.. .++..+.+++|.+... .....++.|+|++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 2 34455 5999999999999852 2221 2566778889988332 22344688999999
Q ss_pred Ccc
Q 047084 185 DVT 187 (437)
Q Consensus 185 ~l~ 187 (437)
.++
T Consensus 264 ~l~ 266 (362)
T 3goz_A 264 IVK 266 (362)
T ss_dssp HHT
T ss_pred Ccc
Confidence 965
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=1.7e-14 Score=138.29 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=136.8
Q ss_pred CEEEecCCCCCc--CCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEccCC-ccc--ccchhhcCCcCCcEEec
Q 047084 1 KVLDLEDAPVDY--LPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNT-LVR--ELPVEIRNLKRLRYLMV 74 (437)
Q Consensus 1 ~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~L~~L~~L~l 74 (437)
++|++++|.+.. +|..+.++++|++|++++|.++ ..+..++.+++|++|++++| .++ .+|..+.++++|++|++
T Consensus 96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 579999999854 7777899999999999999985 67788999999999999976 666 37777899999999999
Q ss_pred eee-ccccccccccccccccCCc-cCcEEEeecCC--------hHhHhhccchHhc---ccc-c-ccCCchhhcCCCCCe
Q 047084 75 YQY-NYTAGFAAAKLHEGFGSLT-NLQKLCIIEAD--------SEALKELMKLRQL---RNL-L-KTIPPPLAADRSTKK 139 (437)
Q Consensus 75 ~~n-~l~~~~~~~~lp~~~~~l~-~L~~L~l~~n~--------~~~~~~L~~L~~l---~n~-~-~~ip~~~~~l~~L~~ 139 (437)
++| .+++. .++..+..++ +|++|++++|. +..+..+.+|+.+ ++. + ...+..+..+++|++
T Consensus 176 ~~~~~l~~~----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 176 SWCFDFTEK----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp CCCTTCCHH----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCCCCcChH----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 999 88742 2567788899 99999999984 2223344444444 454 3 456678899999999
Q ss_pred EEeeCCc-CCCC----CCCCchhhhhhcCCCCCCCCch---hccceeeecCCCCcc
Q 047084 140 ARFRSHE-VDAD----SPSPLSFKDALVHPEQYRSSED---AEMEEEWDLEPGDVT 187 (437)
Q Consensus 140 L~l~~N~-l~~~----~p~~~~~~~~~l~~n~l~~~~~---~~~~~~L~L~~n~l~ 187 (437)
|++++|. ++.. +....++..+.+++| ++.... ...+..|+++.|+++
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCc
Confidence 9999995 3321 222225566677777 532221 123567899999998
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.5e-13 Score=117.50 Aligned_cols=101 Identities=16% Similarity=0.367 Sum_probs=83.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~ 78 (437)
+++++++|.++++|..+. .+|++|+|++|+|..+ |..+.++++|++|+|++|.++.+|.. |.++++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 468899999999988775 7899999999999766 46788899999999998888888886 6889999999999999
Q ss_pred ccccccccccccc-ccCCccCcEEEeecCChH
Q 047084 79 YTAGFAAAKLHEG-FGSLTNLQKLCIIEADSE 109 (437)
Q Consensus 79 l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~ 109 (437)
+++ +|.. |..+++|++|++++|...
T Consensus 93 l~~------l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKS------IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC------CCTTTTTTCTTCSEEECCSSCBC
T ss_pred cce------eCHHHhccccCCCEEEeCCCCcc
Confidence 883 4544 788888888888888743
No 125
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.44 E-value=1.5e-14 Score=144.68 Aligned_cols=204 Identities=13% Similarity=0.092 Sum_probs=133.3
Q ss_pred CEEEecCCCCCcCCc--cccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccccc-chh-hcCCc----
Q 047084 1 KVLDLEDAPVDYLPE--GVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVREL-PVE-IRNLK---- 67 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~l-p~~-~~~L~---- 67 (437)
++|||++|.++..+. .+..+++|++|++++|.++ .++..+..+++|++|++++|.++.. +.. +..++
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 478999998866543 2678889999999999986 4567788889999999997777653 223 33455
Q ss_pred CCcEEeceeeccccccccccccccccCCccCcEEEeecCChH-----hHh--------hccchHhccccccc-----CCc
Q 047084 68 RLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALK--------ELMKLRQLRNLLKT-----IPP 129 (437)
Q Consensus 68 ~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~--------~L~~L~~l~n~~~~-----ip~ 129 (437)
+|++|++++|.++... ...+|..+..+++|++|++++|... .+. +|+.|...+|.+.. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAG-CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGG-HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHH-HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 6999999999887321 1245777888999999999998732 121 24444444555432 455
Q ss_pred hhhcCCCCCeEEeeCCcCCCCCCCC---------chhhhhhcCCCCCCCCc---------hhccceeeecCCCCcccC--
Q 047084 130 PLAADRSTKKARFRSHEVDADSPSP---------LSFKDALVHPEQYRSSE---------DAEMEEEWDLEPGDVTIG-- 189 (437)
Q Consensus 130 ~~~~l~~L~~L~l~~N~l~~~~p~~---------~~~~~~~l~~n~l~~~~---------~~~~~~~L~L~~n~l~~~-- 189 (437)
.+..+++|++|++++|.++...+.. ..+..+.+++|.+.... ....++.|++++|+++..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 6677888999999998887321111 14555667777763211 123456788888876521
Q ss_pred ---------CCCCCCeEeechHHHh
Q 047084 190 ---------DDGTMPTIKFSKRIQD 205 (437)
Q Consensus 190 ---------~~~~lp~l~l~~n~l~ 205 (437)
....+..+.++.+.+.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCC
Confidence 1245555665555443
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=4.1e-14 Score=125.12 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=84.8
Q ss_pred CCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccc
Q 047084 10 VDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLH 89 (437)
Q Consensus 10 l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp 89 (437)
++++|..+.++++|++|++++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++|++++ +|
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~------l~ 109 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS------LS 109 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC------HH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc------CC
Confidence 4445456777777777777777776676 7777777777777777777777767777777777777777763 34
Q ss_pred ccccCCccCcEEEeecCChHhHhhccchHhcccccccCC--chhhcCCCCCeEEeeCCcCCCCCCC
Q 047084 90 EGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP--PPLAADRSTKKARFRSHEVDADSPS 153 (437)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip--~~~~~l~~L~~L~l~~N~l~~~~p~ 153 (437)
.+..+++|+.|++++|+. ..+| ..+..+++|++|++++|++++..|.
T Consensus 110 -~~~~l~~L~~L~l~~N~i----------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKI----------------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp -HHHHHHHSSEEEESEEEC----------------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred -ccccCCCCCEEECCCCcC----------------CchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 466677777777777643 2222 2567788899999999988865443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.4e-12 Score=111.91 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=90.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcc-cChhhhcccCCCEEEccCCcccccc--hhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKI-IPKSIGNLLGLETLDLKNTLVRELP--VEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~~~~~~lp--~~~~~L~~L~~L~l~~n 77 (437)
++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+.++++|++|++++|.++.+| ..+..+++|++|++++|
T Consensus 52 ~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 52 EFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred CEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 5899999999888 788999999999999999976 7777888999999999999999987 67999999999999999
Q ss_pred ccccccccccccc----cccCCccCcEEEeecCCh
Q 047084 78 NYTAGFAAAKLHE----GFGSLTNLQKLCIIEADS 108 (437)
Q Consensus 78 ~l~~~~~~~~lp~----~~~~l~~L~~L~l~~n~~ 108 (437)
.+++. |. .+..+++|++|++++|..
T Consensus 131 ~l~~~------~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 131 EVTNL------NDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGGTS------TTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCcch------HHHHHHHHHhCccCcEecCCCCCh
Confidence 99843 54 688999999999999863
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=7.3e-13 Score=114.71 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=106.9
Q ss_pred CEEEecCCCCCcCCccccCCC-CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhh-cCCcCCcEEeceeec
Q 047084 1 KVLDLEDAPVDYLPEGVGNLF-NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYN 78 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~n~ 78 (437)
++|++++|.++.+|. +..+. +|++|++++|.|..+ +.+..+++|++|++++|.++.+|+.+ ..+++|++|++++|.
T Consensus 22 ~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 22 RELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp EEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred eEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence 479999999999964 55555 999999999999877 67899999999999999999998774 999999999999999
Q ss_pred cccccccccccc--cccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 79 YTAGFAAAKLHE--GFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 79 l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
++ .+|. .+..+++|+.|++++|....++... ...+..+++|+.|++++|.+.
T Consensus 100 i~------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~------------~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 100 LV------ELGDLDPLASLKSLTYLCILRNPVTNKKHYR------------LYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CC------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHH------------HHHHHHCTTCSEETTEECCHH
T ss_pred CC------cchhhHhhhcCCCCCEEEecCCCCCCcHhHH------------HHHHHHCCccceeCCCcCCHH
Confidence 97 4565 7889999999999999764422100 013678899999999999886
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.7e-12 Score=133.12 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=51.7
Q ss_pred EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084 2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA 81 (437)
Q Consensus 2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~ 81 (437)
+|+|++|.|+.+|. ++++++|+.|+|++|.|..+|..++++++|++|+|++|.++.+| .+++|++|++|+|++|++++
T Consensus 445 ~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 445 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred EEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCC
Confidence 45555555555554 55555555555555555555555555555555555555555555 45555555555555555552
Q ss_pred ccccccccccccCCccCcEEEeecC
Q 047084 82 GFAAAKLHEGFGSLTNLQKLCIIEA 106 (437)
Q Consensus 82 ~~~~~~lp~~~~~l~~L~~L~l~~n 106 (437)
.. .|..++.+++|+.|++++|
T Consensus 523 ~~----~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 523 SA----AIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SS----TTGGGGGCTTCCEEECTTS
T ss_pred CC----CcHHHhcCCCCCEEEecCC
Confidence 10 0444555555555555554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=2.4e-12 Score=111.44 Aligned_cols=102 Identities=26% Similarity=0.431 Sum_probs=90.3
Q ss_pred CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n 77 (437)
++|++++|.++.+|.. +.++++|++|++++|.+..+|+. +.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 5799999999998774 68999999999999999888754 68899999999999999998876 789999999999999
Q ss_pred cccccccccccccc-ccCCccCcEEEeecCCh
Q 047084 78 NYTAGFAAAKLHEG-FGSLTNLQKLCIIEADS 108 (437)
Q Consensus 78 ~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~ 108 (437)
.+++ +|.. +..+++|++|++++|..
T Consensus 111 ~l~~------~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 111 QLKS------VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSC------CCTTTTTTCTTCCEEECCSSCB
T ss_pred cceE------eCHHHhcCCcccCEEEecCCCe
Confidence 9984 3544 68899999999999984
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=6.5e-14 Score=123.83 Aligned_cols=135 Identities=20% Similarity=0.147 Sum_probs=107.7
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~ 80 (437)
++|++++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+++|++|++++|+++
T Consensus 51 ~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 51 KHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp SEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECC
T ss_pred CEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCC
Confidence 58999999999998 899999999999999999999998888999999999999999888 6999999999999999998
Q ss_pred cccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCC
Q 047084 81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~ 149 (437)
+.. . ...+..+++|++|++++|.......- .+.....+ ..+..+++|+.|+ +|.++.
T Consensus 129 ~~~---~-~~~l~~l~~L~~L~l~~N~l~~~~~~------~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 129 NWG---E-IDKLAALDKLEDLLLAGNPLYNDYKE------NNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CHH---H-HHHHTTTTTCSEEEECSCHHHHHHHT------TTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred chh---H-HHHHhcCCCCCEEEecCCcccccccc------ccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 431 0 13688999999999999975433110 01111111 2467788999886 777763
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.4e-12 Score=109.56 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=87.1
Q ss_pred CEEEecCCCCCcCCccccCCCCCcEEEeecccCcc-cChhhhcccCCCEEEccCCcccccc--hhhcCCcCCcEEeceee
Q 047084 1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKI-IPKSIGNLLGLETLDLKNTLVRELP--VEIRNLKRLRYLMVYQY 77 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~~~~~~lp--~~~~~L~~L~~L~l~~n 77 (437)
++|++++|.++.+ ..+.++++|++|++++|.+.. +|..+..+++|++|++++|.++.+| ..++.+++|++|++++|
T Consensus 45 ~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 45 EFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred cEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 5899999999888 788999999999999999976 7777888999999999999999876 67999999999999999
Q ss_pred cccccccccccc-ccccCCccCcEEEeec
Q 047084 78 NYTAGFAAAKLH-EGFGSLTNLQKLCIIE 105 (437)
Q Consensus 78 ~l~~~~~~~~lp-~~~~~l~~L~~L~l~~ 105 (437)
.+++.. ..+ ..+..+++|+.|++++
T Consensus 124 ~l~~~~---~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 124 EVTNLN---DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGST---THHHHHHHHCTTCCEETTBC
T ss_pred cccchH---HHHHHHHHHCCCcccccCCC
Confidence 998542 000 3588999999998763
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=6.7e-12 Score=108.42 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=89.9
Q ss_pred CcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecccccccccccccc-ccCCccCcE
Q 047084 23 LHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQK 100 (437)
Q Consensus 23 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~-~~~l~~L~~ 100 (437)
-+.+++++|.++.+|..+. ++|++|++++|.+..+++ .|+++++|++|+|++|++++ +|.. |..+++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA------IPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc------cChhHhCCcchhhE
Confidence 4789999999999998775 899999999999988854 69999999999999999994 4554 689999999
Q ss_pred EEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCCCCCC
Q 047084 101 LCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDADSPS 153 (437)
Q Consensus 101 L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~~~p~ 153 (437)
|++++|+ +..+|. .+..+++|++|+|++|++.. .+.
T Consensus 86 L~L~~N~----------------l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~ 122 (174)
T 2r9u_A 86 LDLNDNH----------------LKSIPRGAFDNLKSLTHIYLYNNPWDC-ECR 122 (174)
T ss_dssp EECCSSC----------------CCCCCTTTTTTCTTCSEEECCSSCBCT-TBG
T ss_pred EECCCCc----------------cceeCHHHhccccCCCEEEeCCCCccc-ccc
Confidence 9999864 445565 48889999999999999994 444
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=7.1e-12 Score=107.83 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=89.6
Q ss_pred CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccccccccccccccccCCccCcE
Q 047084 22 NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQK 100 (437)
Q Consensus 22 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~ 100 (437)
..+.+++++|.+..+|..+. ++|++|++++|.+..+++ .|.++++|++|+|++|++++.. +..|..+++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-----AGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCE
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-----hhhccCCCCCCE
Confidence 46889999999999998764 899999999999988854 5999999999999999999442 345789999999
Q ss_pred EEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCCC
Q 047084 101 LCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDAD 150 (437)
Q Consensus 101 L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~~ 150 (437)
|++++|+ +..+|. .+..+++|++|+|++|+++..
T Consensus 83 L~L~~N~----------------l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQ----------------LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSC----------------CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EECCCCc----------------cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999864 344554 588999999999999999954
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.5e-11 Score=118.21 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=85.8
Q ss_pred EEEecCC-CCCcCCccccCCCCCcEEEeec-ccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084 2 VLDLEDA-PVDYLPEGVGNLFNLHYLSVKN-TKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY 77 (437)
Q Consensus 2 ~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~-n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n 77 (437)
.++++++ .++.+|. +..+.+|+.|+|++ |.|..+| ..|.+|++|++|+|++|.+..+|+ .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 9998777 568899999999999888888876 5899999999999999
Q ss_pred cccccccccccccc-ccCCccCcEEEeecCChHh
Q 047084 78 NYTAGFAAAKLHEG-FGSLTNLQKLCIIEADSEA 110 (437)
Q Consensus 78 ~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~ 110 (437)
+|++ +|.. |..+. |+.|+|.+|.+..
T Consensus 91 ~l~~------~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALES------LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSC------CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccce------eCHHHcccCC-ceEEEeeCCCccC
Confidence 9984 4544 45555 9999999998543
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.4e-10 Score=111.52 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=87.6
Q ss_pred cEEEeecc-cCcccChhhhcccCCCEEEccC-Ccccccch-hhcCCcCCcEEeceeeccccccccccccccccCCccCcE
Q 047084 24 HYLSVKNT-KVKIIPKSIGNLLGLETLDLKN-TLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQK 100 (437)
Q Consensus 24 ~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~-~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~ 100 (437)
..++.+++ .|..+|. +..+++|++|+|++ |.++.+|+ .|++|++|++|+|++|+|++.. |..|.++++|+.
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-----PDAFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-----TTGGGSCSCCCE
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-----HHHhcCCcCCCE
Confidence 45688888 8999999 99999999999995 99999986 5999999999999999999653 567899999999
Q ss_pred EEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084 101 LCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA 149 (437)
Q Consensus 101 L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~ 149 (437)
|+|++|+ +..+|..+....+|+.|+|++|++..
T Consensus 85 L~l~~N~----------------l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNA----------------LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSC----------------CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred EeCCCCc----------------cceeCHHHcccCCceEEEeeCCCccC
Confidence 9999975 34566544433349999999999984
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.09 E-value=1.8e-12 Score=133.89 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=77.6
Q ss_pred CEEEecCCCCCcC-----CccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccccchhhcCCcCCc
Q 047084 1 KVLDLEDAPVDYL-----PEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLR 70 (437)
Q Consensus 1 ~~L~L~~n~l~~l-----p~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~ 70 (437)
++|+|++|.+... +..+.++++|++|++++|.+. .++..+.++++|++|+++++.+..+|..+.++++|+
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~ 246 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence 4677777765332 222355667777777777664 233344566777777777666666666666666666
Q ss_pred EEeceeeccccc---------------------cccccccccccCCccCcEEEeecCCh------HhHhhccchHhc---
Q 047084 71 YLMVYQYNYTAG---------------------FAAAKLHEGFGSLTNLQKLCIIEADS------EALKELMKLRQL--- 120 (437)
Q Consensus 71 ~L~l~~n~l~~~---------------------~~~~~lp~~~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l--- 120 (437)
+|+++.+..... .....+|..+..+++|++|++++|.. ..+..+.+|+.+
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 666653211100 00123455566777788888877761 112333333333
Q ss_pred cccc-ccCCchhhcCCCCCeEEee
Q 047084 121 RNLL-KTIPPPLAADRSTKKARFR 143 (437)
Q Consensus 121 ~n~~-~~ip~~~~~l~~L~~L~l~ 143 (437)
++.. ..++..+..+++|++|+++
T Consensus 327 ~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CccCHHHHHHHHHhCCCCCEEEee
Confidence 2211 1223333456777777777
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.97 E-value=6.7e-12 Score=129.50 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=50.3
Q ss_pred EEEecCCCCCcC-----CccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccC-----------------------
Q 047084 2 VLDLEDAPVDYL-----PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKN----------------------- 53 (437)
Q Consensus 2 ~L~L~~n~l~~l-----p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~----------------------- 53 (437)
+|++++|.++.+ +..+.++++|+.|++++|.+..+|..+.++++|++|+++.
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEE
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccccc
Confidence 456666655422 2223455666666666666555555555555555555541
Q ss_pred ----CcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEee
Q 047084 54 ----TLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCII 104 (437)
Q Consensus 54 ----~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~ 104 (437)
.....+|..+..+++|++|++++|.+++. .++..+..+++|+.|+++
T Consensus 276 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~----~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETE----DHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH----HHHHHHTTCTTCCEEEEE
T ss_pred CccccchhHHHHHHhhcCCCcEEecCCCcCCHH----HHHHHHHhCcCCCEEecc
Confidence 11122344445555666666666654422 122334555666666665
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=8.9e-10 Score=105.10 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=51.8
Q ss_pred CEEEecCCCCC--------------------cCCc-cccC--------CCCCcEEEeecccCcccCh-hhhcccCCCEEE
Q 047084 1 KVLDLEDAPVD--------------------YLPE-GVGN--------LFNLHYLSVKNTKVKIIPK-SIGNLLGLETLD 50 (437)
Q Consensus 1 ~~L~L~~n~l~--------------------~lp~-~~~~--------l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~ 50 (437)
++|||++|++. .+|+ .|.+ +.+|+.|+|++ .+..+++ +|.++++|++|+
T Consensus 52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~ 130 (329)
T 3sb4_A 52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ 130 (329)
T ss_dssp CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence 57889888887 4554 4667 89999999988 7877774 577899999999
Q ss_pred ccCCcccccchh-hcCCcCCcEEec
Q 047084 51 LKNTLVRELPVE-IRNLKRLRYLMV 74 (437)
Q Consensus 51 l~~~~~~~lp~~-~~~L~~L~~L~l 74 (437)
+++|.+..+++. |.++.++..+.+
T Consensus 131 l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 131 IRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp BCCSSCCEECTTSSCTTTCEEEECT
T ss_pred cCCCCccccchhhhcCCCceEEecC
Confidence 987776555543 444444444443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.89 E-value=2.2e-10 Score=111.16 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=87.0
Q ss_pred CEEEecCCCCCcCCc-ccc-----CCCCCcEEEeecccCccc-Chhh-hcccCCCEEEccCCcccccchh-----h-cCC
Q 047084 1 KVLDLEDAPVDYLPE-GVG-----NLFNLHYLSVKNTKVKII-PKSI-GNLLGLETLDLKNTLVRELPVE-----I-RNL 66 (437)
Q Consensus 1 ~~L~L~~n~l~~lp~-~~~-----~l~~L~~L~L~~n~l~~l-p~~~-~~l~~L~~L~l~~~~~~~lp~~-----~-~~L 66 (437)
++|+|++|.++.... .+. ...+|+.|+|++|.++.. ...+ ..+.+|++|+|++|.++..... + ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 478899998865422 222 236899999999988531 2233 3477889999998877654322 2 346
Q ss_pred cCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCc
Q 047084 67 KRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHE 146 (437)
Q Consensus 67 ~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~ 146 (437)
++|++|+|++|.++... ...++..+..+++|++|+|++|...... ...++..+...++|++|+|++|.
T Consensus 155 ~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-----------~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAG-VAVLMEGLAGNTSVTHLSLLHTGLGDEG-----------LELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp CCCCEEECCSSCCHHHH-HHHHHHHHHTCSSCCEEECTTSSCHHHH-----------HHHHHHHGGGCSCCCEEECCSSC
T ss_pred CccceeeCCCCCCChHH-HHHHHHHHhcCCCcCEEeCCCCCCCcHH-----------HHHHHHHHhcCCCcCeEECCCCC
Confidence 78999999999886321 1235566677888999999998743311 01122334445566677777776
Q ss_pred CC
Q 047084 147 VD 148 (437)
Q Consensus 147 l~ 148 (437)
|+
T Consensus 223 i~ 224 (372)
T 3un9_A 223 AG 224 (372)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=8.9e-09 Score=98.12 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCCcEEEeecccCc--------------------ccC-hhhhc--------ccCCCEEEccCCcccccchh-hcCCcCC
Q 047084 20 LFNLHYLSVKNTKVK--------------------IIP-KSIGN--------LLGLETLDLKNTLVRELPVE-IRNLKRL 69 (437)
Q Consensus 20 l~~L~~L~L~~n~l~--------------------~lp-~~~~~--------l~~L~~L~l~~~~~~~lp~~-~~~L~~L 69 (437)
+.+|+.|||++|+|. .+| .+|.+ +++|+.|++.. .+..+++. |.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999987 455 34667 89999999998 78888875 9999999
Q ss_pred cEEeceeeccccccccccccccccCCccCcEEEe
Q 047084 70 RYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI 103 (437)
Q Consensus 70 ~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l 103 (437)
+.|++++|.++... +..|.++.++..+.+
T Consensus 127 ~~l~l~~n~i~~i~-----~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 127 KICQIRKKTAPNLL-----PEALADSVTAIFIPL 155 (329)
T ss_dssp CEEEBCCSSCCEEC-----TTSSCTTTCEEEECT
T ss_pred ceEEcCCCCccccc-----hhhhcCCCceEEecC
Confidence 99999999876221 233555544544443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=1.4e-09 Score=105.42 Aligned_cols=156 Identities=11% Similarity=0.104 Sum_probs=98.5
Q ss_pred CCCCcEEEeecccCcccC-hhhhcc-----cCCCEEEccCCcccccch-h-hcCCcCCcEEeceeecccccccccccccc
Q 047084 20 LFNLHYLSVKNTKVKIIP-KSIGNL-----LGLETLDLKNTLVRELPV-E-IRNLKRLRYLMVYQYNYTAGFAAAKLHEG 91 (437)
Q Consensus 20 l~~L~~L~L~~n~l~~lp-~~~~~l-----~~L~~L~l~~~~~~~lp~-~-~~~L~~L~~L~l~~n~l~~~~~~~~lp~~ 91 (437)
+++|+.|+|++|.++... ..+..+ .+|++|+|++|.++.... . ...+++|+.|+|++|.++... ...+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-CKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH-HHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH-HHHHHHH
Confidence 467899999999986322 333333 689999999777654221 2 345678999999999887321 1122223
Q ss_pred c-cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC--------CCCCchhhhhhc
Q 047084 92 F-GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD--------SPSPLSFKDALV 162 (437)
Q Consensus 92 ~-~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~--------~p~~~~~~~~~l 162 (437)
+ ...++|++|+|++|...... ...++..+...++|++|+|++|.|+.. +....++..+.+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~-----------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAG-----------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHH-----------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHhcCCccceeeCCCCCCChHH-----------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 3 34678999999998743321 112344566778999999999999731 112225666677
Q ss_pred CCCCCCCCc---------hhccceeeecCCCCcc
Q 047084 163 HPEQYRSSE---------DAEMEEEWDLEPGDVT 187 (437)
Q Consensus 163 ~~n~l~~~~---------~~~~~~~L~L~~n~l~ 187 (437)
++|.+.... ....++.|+|++|.++
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 777772211 1133566788888765
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.54 E-value=9.4e-09 Score=105.83 Aligned_cols=13 Identities=0% Similarity=-0.043 Sum_probs=8.1
Q ss_pred cceeeecCCCCcc
Q 047084 175 MEEEWDLEPGDVT 187 (437)
Q Consensus 175 ~~~~L~L~~n~l~ 187 (437)
.++.|+|++|.++
T Consensus 482 ~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 482 SLRKLEIRDCPFG 494 (594)
T ss_dssp TCCEEEEESCSCC
T ss_pred CcCEEECcCCCCc
Confidence 3566677777653
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.51 E-value=3.8e-08 Score=101.30 Aligned_cols=88 Identities=16% Similarity=0.034 Sum_probs=45.4
Q ss_pred CCCCCcEEEeecccCc-ccChhhh-cccCCCEEEccCC-cccc--cchhhcCCcCCcEEeceeecccccccccccccccc
Q 047084 19 NLFNLHYLSVKNTKVK-IIPKSIG-NLLGLETLDLKNT-LVRE--LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFG 93 (437)
Q Consensus 19 ~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~l~~~-~~~~--lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~ 93 (437)
.+++|+.|+|++|.++ ..+..+. .+++|++|+++++ .++. ++.-+.++++|++|++++|.+++.. ...++....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHHhh
Confidence 4566666666666653 2333443 4666666666644 3333 3333445666666666666655322 111222223
Q ss_pred CCccCcEEEeecCC
Q 047084 94 SLTNLQKLCIIEAD 107 (437)
Q Consensus 94 ~l~~L~~L~l~~n~ 107 (437)
.+++|+.|++++|.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 44555555555553
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=1.6e-06 Score=84.74 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=23.3
Q ss_pred CCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchhhcCCcCCcEEece
Q 047084 22 NLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVY 75 (437)
Q Consensus 22 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~ 75 (437)
+|+.+.+.. .+..++ .+|.++.+|+.+++.+|.+..+|...-...+|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 455555443 333333 23444555555555544444444432223444444443
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=6.5e-08 Score=84.04 Aligned_cols=120 Identities=16% Similarity=0.088 Sum_probs=85.2
Q ss_pred ccCCCCCcEEEeecc-cCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhcCCcCCcEEeceeecccccccc
Q 047084 17 VGNLFNLHYLSVKNT-KVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIRNLKRLRYLMVYQYNYTAGFAA 85 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~n~l~~~~~~ 85 (437)
+...+.|+.|+|++| .|+ .+...+...++|++|+|++|.++. +...+...++|++|+|++|.|+... .
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-I 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-H
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-H
Confidence 456788999999999 885 244556677899999999887764 4445667788999999999987421 1
Q ss_pred ccccccccCCccCcEEEe--ecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 86 AKLHEGFGSLTNLQKLCI--IEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 86 ~~lp~~~~~l~~L~~L~l--~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
..+...+...++|++|++ ++|....-.. ..+...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~-----------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVE-----------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHH-----------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHH-----------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 235566777788999999 7776322110 112234556678999999999886
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.1e-07 Score=82.60 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=84.5
Q ss_pred CEEEecCC-CCCc-----CCccccCCCCCcEEEeecccCcc-----cChhhhcccCCCEEEccCCcccc-----cchhhc
Q 047084 1 KVLDLEDA-PVDY-----LPEGVGNLFNLHYLSVKNTKVKI-----IPKSIGNLLGLETLDLKNTLVRE-----LPVEIR 64 (437)
Q Consensus 1 ~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~ 64 (437)
++|+|++| .++. +...+...++|++|+|++|.|+. +...+...++|++|+|++|.++. +...+.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 57999999 8853 34456778899999999999952 44556677899999999888875 456688
Q ss_pred CCcCCcEEec--eeeccccccccccccccccCCccCcEEEeecCChHh
Q 047084 65 NLKRLRYLMV--YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA 110 (437)
Q Consensus 65 ~L~~L~~L~l--~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~ 110 (437)
..++|++|+| ++|.++... ...+.+.+...++|++|++++|....
T Consensus 119 ~n~~L~~L~L~~~~N~i~~~g-~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp GCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred hCCCceEEEecCCCCCCCHHH-HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 8899999999 889997431 12345556677899999999998543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.25 E-value=3.4e-06 Score=82.45 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=85.5
Q ss_pred EEecCCCCCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee---
Q 047084 3 LDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY--- 77 (437)
Q Consensus 3 L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n--- 77 (437)
+.+.. .+..++. .|.++.+|+.++++.|.+..+|...+...+|+.+.+.++ +..++.. |.++++|+.+++..|
T Consensus 162 i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~ 239 (401)
T 4fdw_A 162 IVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVST 239 (401)
T ss_dssp EECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCE
T ss_pred EEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccC
Confidence 44443 4556644 567777777777777777666655444566666666533 4445443 556666666655432
Q ss_pred ------------------cccccccccccc-ccccCCccCcEEEeecCC----------hHhHhhccchHhc--cccccc
Q 047084 78 ------------------NYTAGFAAAKLH-EGFGSLTNLQKLCIIEAD----------SEALKELMKLRQL--RNLLKT 126 (437)
Q Consensus 78 ------------------~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~----------~~~~~~L~~L~~l--~n~~~~ 126 (437)
.++ .++ ..|.++++|+.+.+.+|. ...|.++..|+.+ .+.+..
T Consensus 240 I~~~aF~~~~L~~i~lp~~i~------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~ 313 (401)
T 4fdw_A 240 IGQEAFRESGITTVKLPNGVT------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRI 313 (401)
T ss_dssp ECTTTTTTCCCSEEEEETTCC------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCE
T ss_pred ccccccccCCccEEEeCCCcc------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEE
Confidence 222 333 458889999999998764 2345555555544 233556
Q ss_pred CC-chhhcCCCCCeEEeeCCcCC
Q 047084 127 IP-PPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 127 ip-~~~~~l~~L~~L~l~~N~l~ 148 (437)
|+ .+|.++++|+.+.|..| ++
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CC
T ss_pred EhhhhhcCCCCccEEEECcc-cc
Confidence 65 56788999999999665 54
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=2.4e-06 Score=82.15 Aligned_cols=16 Identities=0% Similarity=-0.114 Sum_probs=11.5
Q ss_pred CCCCCeEEeeCCcCCC
Q 047084 134 DRSTKKARFRSHEVDA 149 (437)
Q Consensus 134 l~~L~~L~l~~N~l~~ 149 (437)
+++|++|+|+.|.|++
T Consensus 278 ~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 278 LPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGCSEEECCSSCCBH
T ss_pred CCCCCEEECCCCCCCh
Confidence 5677777777777763
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=2.9e-07 Score=84.29 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=54.3
Q ss_pred cCCCCCcE--EEeecccCcccChh----hhcccCCCEEEccCCcccccc---hhhcCCcCCcEEeceeeccccccccccc
Q 047084 18 GNLFNLHY--LSVKNTKVKIIPKS----IGNLLGLETLDLKNTLVRELP---VEIRNLKRLRYLMVYQYNYTAGFAAAKL 88 (437)
Q Consensus 18 ~~l~~L~~--L~L~~n~l~~lp~~----~~~l~~L~~L~l~~~~~~~lp---~~~~~L~~L~~L~l~~n~l~~~~~~~~l 88 (437)
...+.|.. ++++.|....++.. ..++++|++|+|++|.+..++ ..+..+++|+.|+|++|++++.. .+
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---~l 214 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---EL 214 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---GG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---hh
Confidence 33344444 56667754433322 245778888888877776654 45677888888888888887542 11
Q ss_pred cccccCCccCcEEEeecCCh
Q 047084 89 HEGFGSLTNLQKLCIIEADS 108 (437)
Q Consensus 89 p~~~~~l~~L~~L~l~~n~~ 108 (437)
..+..+ +|++|+|++|..
T Consensus 215 -~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 215 -DKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp -GGGTTS-CCSEEECTTSTT
T ss_pred -hhcccC-CcceEEccCCcC
Confidence 223334 788888888874
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=1.7e-06 Score=79.21 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=38.6
Q ss_pred cCCCCCcEEEeecccCcc---cChhhhcccCCCEEEccCCcccccchhhcCCc--CCcEEeceeecccc
Q 047084 18 GNLFNLHYLSVKNTKVKI---IPKSIGNLLGLETLDLKNTLVRELPVEIRNLK--RLRYLMVYQYNYTA 81 (437)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~--~L~~L~l~~n~l~~ 81 (437)
.++++|+.|+|++|+|.. +|..+..+++|++|+|++|.+..+. ++..+. +|++|+|++|.+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcc
Confidence 346667777777777643 3345566777777777766666552 233333 67777777777664
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=8.9e-06 Score=78.18 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=60.1
Q ss_pred ccCCCCCcEEEeecccCc----------ccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccc
Q 047084 17 VGNLFNLHYLSVKNTKVK----------IIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAA 86 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~----------~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~ 86 (437)
+.++++|+.|.+..+... .+...+..+++|+.|.++++.-..++. + .+++|+.|++..+.++...
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~--- 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV--- 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH---
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH---
Confidence 445667777766544221 233444556677777776442123333 3 2667777777666654211
Q ss_pred cccccc--cCCccCcEEEeecCC--hHhHhhccchHhcccccccCCchh--hcCCCCCeEEeeCCcCCC
Q 047084 87 KLHEGF--GSLTNLQKLCIIEAD--SEALKELMKLRQLRNLLKTIPPPL--AADRSTKKARFRSHEVDA 149 (437)
Q Consensus 87 ~lp~~~--~~l~~L~~L~l~~n~--~~~~~~L~~L~~l~n~~~~ip~~~--~~l~~L~~L~l~~N~l~~ 149 (437)
...+ ..+++|+.|+|+.+. ...-..+.. +...+ ..+++|++|+|++|.+..
T Consensus 210 --l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~----------l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 210 --VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV----------FRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp --HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG----------TGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred --HHHHHHccCCCCcEEEEeccccccccchhHHH----------HHHHHhcCCCCCcCEEeCCCCCCch
Confidence 1122 256667777665321 100000111 11112 357899999999999873
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.46 E-value=0.00011 Score=62.41 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=55.3
Q ss_pred cCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCC-cccccc-hhhcCC----cCCcEEeceeec-ccccc
Q 047084 12 YLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNT-LVRELP-VEIRNL----KRLRYLMVYQYN-YTAGF 83 (437)
Q Consensus 12 ~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~-~~~~lp-~~~~~L----~~L~~L~l~~n~-l~~~~ 83 (437)
.+|.....-..|+.||++++.|+.. -..+.++++|++|+|+++ .++.-- ..+..+ ++|++|+|+++. ++...
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 3454332334688888888887422 145677888888888844 344321 124443 368888888864 65221
Q ss_pred ccccccccccCCccCcEEEeecCC
Q 047084 84 AAAKLHEGFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 84 ~~~~lp~~~~~l~~L~~L~l~~n~ 107 (437)
-..+..+++|++|+++++.
T Consensus 132 -----l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 -----IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp -----HHHGGGCTTCCEEEEESCT
T ss_pred -----HHHHhcCCCCCEEECCCCC
Confidence 1235667788888887764
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00048 Score=59.67 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=69.5
Q ss_pred CCCCCcEEEeecc-cCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhcCCcCCcEEeceeecccccccccc
Q 047084 19 NLFNLHYLSVKNT-KVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIRNLKRLRYLMVYQYNYTAGFAAAK 87 (437)
Q Consensus 19 ~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~n~l~~~~~~~~ 87 (437)
+-+.|+.|+|++| .|+ .+-.++..-+.|+.|+|++|.++. +-..+..-+.|+.|+|+.|.|.... ...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHH
Confidence 3467888888875 664 234455566778888888777763 3334556677888888888887322 113
Q ss_pred ccccccCCccCcEEEeecCC---hHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 88 LHEGFGSLTNLQKLCIIEAD---SEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 88 lp~~~~~l~~L~~L~l~~n~---~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
+-+.+..-+.|+.|+|++|. ...-. -..+...+..-++|++|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g-----------~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQV-----------EMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHH-----------HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHH-----------HHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34455555668888876541 11100 0012233444467777887766554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.90 E-value=0.00082 Score=57.07 Aligned_cols=78 Identities=10% Similarity=0.236 Sum_probs=56.9
Q ss_pred CEEEecCCCCCcC-CccccCCCCCcEEEeeccc-Ccc-cChhhhcc----cCCCEEEccC-Ccccccc-hhhcCCcCCcE
Q 047084 1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTK-VKI-IPKSIGNL----LGLETLDLKN-TLVRELP-VEIRNLKRLRY 71 (437)
Q Consensus 1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~-l~~-lp~~~~~l----~~L~~L~l~~-~~~~~lp-~~~~~L~~L~~ 71 (437)
+.||++++.|+.. -..+.++++|+.|+|++|. |+. --..+..+ ++|++|++++ ..++.-- ..+.++++|++
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 3689999997543 2356889999999999996 642 11345554 4799999994 4465422 23778999999
Q ss_pred Eeceeec
Q 047084 72 LMVYQYN 78 (437)
Q Consensus 72 L~l~~n~ 78 (437)
|+++++.
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 9999875
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0019 Score=51.98 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=29.9
Q ss_pred EEEeecccCc--ccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccc
Q 047084 25 YLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYT 80 (437)
Q Consensus 25 ~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~ 80 (437)
.++-+++.++ .+|..+. .+|++|+|++|.++.+|.+ |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555554 5553322 2455666666666666554 556666666666666554
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0018 Score=52.22 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=25.3
Q ss_pred EEEccCCccc--ccchhhcCCcCCcEEeceeeccccccccccccc-cccCCccCcEEEeecCC
Q 047084 48 TLDLKNTLVR--ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHE-GFGSLTNLQKLCIIEAD 107 (437)
Q Consensus 48 ~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~ 107 (437)
.++.+++.++ .+|..+. ++|++|+|++|+|+ .+|. .|..+.+|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~------~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT------ALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS------SCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC------ccChhhhhhccccCEEEecCCC
Confidence 4444444444 5554322 24555555555555 2232 24555555555555554
No 158
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.62 E-value=0.00086 Score=37.29 Aligned_cols=21 Identities=33% Similarity=0.858 Sum_probs=18.1
Q ss_pred cccccccccccccCCCCCCcc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~ 394 (437)
+..||.||+.||..+.|+.+.
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC-
T ss_pred CCeeEeCCCCCcccccCCCcc
Confidence 457999999999999999864
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.62 E-value=0.0012 Score=57.08 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=76.3
Q ss_pred CEEEecCC-CCCc-----CCccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhc
Q 047084 1 KVLDLEDA-PVDY-----LPEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIR 64 (437)
Q Consensus 1 ~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~ 64 (437)
+.|+|++| .|+. +-+.+..-+.|+.|+|++|.|+ .+-..+..-+.|++|+|++|.++. +-+.+.
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 46889885 6753 3334556688999999999996 344556667899999999998874 334466
Q ss_pred CCcCCcEEeceeec---cccccccccccccccCCccCcEEEeecCChH
Q 047084 65 NLKRLRYLMVYQYN---YTAGFAAAKLHEGFGSLTNLQKLCIIEADSE 109 (437)
Q Consensus 65 ~L~~L~~L~l~~n~---l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~ 109 (437)
.-+.|++|+|++|. +.... ...+.+.+..-+.|+.|+++.|...
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g-~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQV-EMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHH-HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred hCCceeEEECCCCcCcCcCHHH-HHHHHHHHHhCCCcCeEeccCCCcc
Confidence 66789999998653 33110 1134455666678999999988743
No 160
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=96.60 E-value=0.00083 Score=38.48 Aligned_cols=22 Identities=36% Similarity=0.955 Sum_probs=19.1
Q ss_pred cccccccccccccCCCCCCccc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQK 395 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~~ 395 (437)
...||.||+.||..++|+.+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~prk 27 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPRR 27 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSSS
T ss_pred CCEEEECCccccCHhHCccccc
Confidence 4679999999999999998754
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.35 E-value=0.014 Score=56.32 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=51.9
Q ss_pred ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc-cccc
Q 047084 17 VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH-EGFG 93 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp-~~~~ 93 (437)
|.++..|+.+.+..+.. .+. .++.++.+|+.+.+. +.+..++.. |.++++|+.+.+..+ ++ .+. ..|.
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~------~I~~~aF~ 331 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT------QILDDAFA 331 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC------EECTTTTT
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc------EehHhHhh
Confidence 34445555555544322 222 334455555555553 223344443 555555555555432 22 222 2345
Q ss_pred CCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcC
Q 047084 94 SLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEV 147 (437)
Q Consensus 94 ~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l 147 (437)
++++|+.+.+.. -+..|. .+|.++++|+.+++.+|..
T Consensus 332 ~C~~L~~i~ip~-----------------sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 332 GCEQLERIAIPS-----------------SVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEECT-----------------TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCCCEEEECc-----------------ccCEEhHhHhhCCCCCCEEEECCcee
Confidence 555555554432 134454 4677888888888876643
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.28 E-value=0.013 Score=56.65 Aligned_cols=106 Identities=13% Similarity=0.247 Sum_probs=70.5
Q ss_pred cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc-ccc
Q 047084 16 GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH-EGF 92 (437)
Q Consensus 16 ~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp-~~~ 92 (437)
.|.++..|+.+.+. +.+..++ .+|.++.+|+.+.+..+ +..+.+. |.++++|+.+.+..+ ++ .+. ..|
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~------~I~~~aF 353 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT------KIPESAF 353 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC------BCCGGGG
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC------EEhHhHh
Confidence 46788999999996 4577777 45778999999999855 6667664 999999999999654 55 344 458
Q ss_pred cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084 93 GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 93 ~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~ 148 (437)
.++++|+.+++.++.... ..+....+|+.+.+..|.+.
T Consensus 354 ~~C~~L~~i~~~~~~~~~------------------~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW------------------NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TTCTTCCEEEESSCHHHH------------------HTCBCCCCC-----------
T ss_pred hCCCCCCEEEECCceeeh------------------hhhhccCCCCEEEeCCCCEE
Confidence 999999999998753110 13445566777776666543
No 163
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.26 E-value=0.0019 Score=39.87 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.1
Q ss_pred cccccccccccccCCCCCCcccc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
...||.||+.||....||.+...
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~~ 32 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPRG 32 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCCC
T ss_pred CCeeeECCCCCcchhhCcCCccc
Confidence 36799999999999999997654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.06 E-value=0.0085 Score=57.93 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=63.9
Q ss_pred cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc-cccc
Q 047084 16 GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH-EGFG 93 (437)
Q Consensus 16 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp-~~~~ 93 (437)
.+..+..|+.+....+.+. ...+..+.+|+.+.+.++ +..+++. |.++++|+.+++..+ ++ .++ ..|.
T Consensus 271 ~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~------~I~~~aF~ 340 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE------EIGKRSFR 340 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC------EECTTTTT
T ss_pred ccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc------EEhHHhcc
Confidence 4566777777777655432 134667788888887654 5556554 778888888887543 44 333 4477
Q ss_pred CCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCC
Q 047084 94 SLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSH 145 (437)
Q Consensus 94 ~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N 145 (437)
++++|+.+.+..+ +..|+ .+|.++++|+.+++..+
T Consensus 341 ~c~~L~~i~lp~~-----------------l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 341 GCTSLSNINFPLS-----------------LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-----------------CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEECcc-----------------ccEehHHHhhCCCCCCEEEECCC
Confidence 7888888776542 22222 34556666666666554
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.86 E-value=0.027 Score=53.87 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=55.5
Q ss_pred ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccccccccccccc-ccc
Q 047084 17 VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHE-GFG 93 (437)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~-~~~ 93 (437)
+.....|+.+.+..+ +..++ .++.++..|+.+.+..+ +..++. .|.++.+|+.+.+..+ ++ .++. .|.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~------~i~~~aF~ 283 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK------TVPYLLCS 283 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS------EECTTTTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce------eccccccc
Confidence 344555666665443 33333 34555666666666543 344433 2555666666665432 22 2232 355
Q ss_pred CCccCcEEEeecCC-----hHhHhhccchHhc--ccccccCC-chhhcCCCCCeEEeeC
Q 047084 94 SLTNLQKLCIIEAD-----SEALKELMKLRQL--RNLLKTIP-PPLAADRSTKKARFRS 144 (437)
Q Consensus 94 ~l~~L~~L~l~~n~-----~~~~~~L~~L~~l--~n~~~~ip-~~~~~l~~L~~L~l~~ 144 (437)
++++|+.+.+.++. ...|.++..|+.+ .+.+..|. .+|.++++|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence 66666666655432 1122222222222 11133333 3455666666665543
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.69 E-value=0.032 Score=53.78 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=77.9
Q ss_pred CCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecccccccccc
Q 047084 10 VDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAK 87 (437)
Q Consensus 10 l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~ 87 (437)
+..+.. .+.++..|+.+.+..+....-...+.++..++.+....+. ++. .|..+.+|+.+.+..+ ++ .
T Consensus 241 ~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~------~ 310 (394)
T 4fs7_A 241 FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VK------F 310 (394)
T ss_dssp CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CC------E
T ss_pred ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cc------e
Confidence 334433 4677889999999887544334567788899988877543 444 3788899999988654 44 3
Q ss_pred cc-ccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCC
Q 047084 88 LH-EGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVD 148 (437)
Q Consensus 88 lp-~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~ 148 (437)
++ ..|.++++|+.+.+..+ +..|+ .+|.++++|+.+.+..| ++
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-----------------v~~I~~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-----------------VEEIGKRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-----------------CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred echhhhcCCCCCCEEEeCCc-----------------ccEEhHHhccCCCCCCEEEECcc-cc
Confidence 44 45888999999977542 33443 56788899999999877 65
No 167
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=95.57 E-value=0.0047 Score=41.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.0
Q ss_pred cccccccccccccCCCCCCcccc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
...|+.||..||....||.+...
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~~ 45 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPRG 45 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCCS
T ss_pred CCcceeCCCCCcccccCcCCccc
Confidence 36799999999999999997654
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.16 E-value=0.037 Score=52.91 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=71.8
Q ss_pred CCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccccccccc
Q 047084 10 VDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAA 86 (437)
Q Consensus 10 l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~ 86 (437)
+..++. .+.++..|+.+.+..+ +..++ .++.++.+|+.+.+..+ +..++.. |.++++|+.+.+..+.++
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~------ 299 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE------ 299 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC------
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc------
Confidence 444433 4677889999999776 65665 45677889999988654 5566654 888999999999877776
Q ss_pred ccc-ccccCCccCcEEEeecCC----hHhHhhccchHh
Q 047084 87 KLH-EGFGSLTNLQKLCIIEAD----SEALKELMKLRQ 119 (437)
Q Consensus 87 ~lp-~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~ 119 (437)
.++ ..|.++.+|+.+.+..+- ..+|.++..|+.
T Consensus 300 ~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 300 TLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALST 337 (379)
T ss_dssp EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCC
T ss_pred eehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCE
Confidence 344 458889999999987542 344555555443
No 169
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=95.14 E-value=0.0065 Score=32.75 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.0
Q ss_pred cccccccccccccCCCCCCcc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~ 394 (437)
.++|..|..+||...+|...+
T Consensus 3 RpYCe~CE~FGH~t~~C~d~e 23 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCNDDE 23 (26)
T ss_dssp -CEETTTTEESSCGGGCCTTC
T ss_pred CccchHHHHhCcccccCCccc
Confidence 479999999999999997654
No 170
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.00 E-value=0.0088 Score=39.72 Aligned_cols=22 Identities=32% Similarity=0.785 Sum_probs=18.5
Q ss_pred ccccccccccccCCCCCCcccc
Q 047084 375 IICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
..|+.||..||..++||.....
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~~~~ 29 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTNGDK 29 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGGGCS
T ss_pred CccccCCCcCcccccCCCCCCC
Confidence 5799999999999999965433
No 171
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.042 Score=40.01 Aligned_cols=23 Identities=39% Similarity=0.842 Sum_probs=20.2
Q ss_pred cccccccccccccCCCCCCcccc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
..+|+.||.-||..++|+.+...
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r~s 68 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKRSS 68 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCCSC
T ss_pred CCeecccCCCCcCcccCCccccC
Confidence 47999999999999999997644
No 172
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=93.28 E-value=0.036 Score=35.93 Aligned_cols=22 Identities=36% Similarity=0.883 Sum_probs=18.5
Q ss_pred CcccccccccccccCCCCCCcc
Q 047084 373 LPIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~~~ 394 (437)
-+..||.||..||....|+.+.
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~~~ 26 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRAPR 26 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCCSS
T ss_pred CcCeeeecCCCCcChhhCcCCC
Confidence 3578999999999999998863
No 173
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=92.78 E-value=0.047 Score=32.98 Aligned_cols=18 Identities=50% Similarity=1.102 Sum_probs=14.7
Q ss_pred cccccccccccCCCCCCc
Q 047084 376 ICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 376 ~C~~cg~~gH~~~~C~~~ 393 (437)
.||.||..||..+.|+.+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 588888888888888764
No 174
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=92.67 E-value=0.05 Score=33.31 Aligned_cols=18 Identities=39% Similarity=1.126 Sum_probs=16.5
Q ss_pred cccccccccccCCCCCCc
Q 047084 376 ICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 376 ~C~~cg~~gH~~~~C~~~ 393 (437)
.||.||..||....|+.+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999975
No 175
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=92.27 E-value=0.053 Score=36.98 Aligned_cols=21 Identities=38% Similarity=0.904 Sum_probs=14.9
Q ss_pred cccccccccccccCCCCCCcc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~ 394 (437)
+..||.||..||....|+.+.
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTT
T ss_pred CCcccccCCCCeehhhCcCCc
Confidence 566777777777777777653
No 176
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=92.18 E-value=0.052 Score=37.02 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.0
Q ss_pred cccccccccccccCCCCCCcccc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
...|+.||..||..+.|+.++..
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~~ 52 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRDGN 52 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC--
T ss_pred CCeeCCCCCCCCCcCCCcCCCcC
Confidence 46799999999999999987653
No 177
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=92.06 E-value=0.056 Score=35.00 Aligned_cols=20 Identities=40% Similarity=0.891 Sum_probs=18.0
Q ss_pred ccccccccccccCCCCCCcc
Q 047084 375 IICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~ 394 (437)
..|+.||..||..+.|+.++
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSSC
T ss_pred CeeCcCCCcCCccCCCcCCC
Confidence 57999999999999999764
No 178
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=91.77 E-value=0.054 Score=32.70 Aligned_cols=19 Identities=42% Similarity=1.030 Sum_probs=16.9
Q ss_pred cccccccccccccCCCCCC
Q 047084 374 PIICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~ 392 (437)
+..|+.||..||..+.||.
T Consensus 19 ~~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 19 PKVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp BTTCSSCCCTTGGGGTTCC
T ss_pred cCeEccCCCcCCccCcCcC
Confidence 4689999999999999973
No 179
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=91.71 E-value=0.063 Score=35.72 Aligned_cols=21 Identities=33% Similarity=0.872 Sum_probs=18.1
Q ss_pred CcccccccccccccCCCCCCc
Q 047084 373 LPIICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~~ 393 (437)
-+..||.||..||....|+.+
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSSC
T ss_pred CCcceeeeCCCCcChhhcCCC
Confidence 357899999999999999876
No 180
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=91.57 E-value=0.075 Score=32.51 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=17.0
Q ss_pred cccccccccccccCCCCCC
Q 047084 374 PIICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~ 392 (437)
...|+.||..||..+.||.
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3689999999999999984
No 181
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.86 E-value=0.12 Score=35.39 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=10.0
Q ss_pred ccccccccccccCCCCCCc
Q 047084 375 IICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~ 393 (437)
..|+.||..||..+.|+..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 4455555555555555543
No 182
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.33 E-value=0.11 Score=35.56 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=18.6
Q ss_pred CcccccccccccccCCCCCCc
Q 047084 373 LPIICYQCGKYGHNSIVCQSK 393 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~~ 393 (437)
.+..||.||..||..+.|+.+
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCSC
T ss_pred CCCcccccCCCCcChhhCCCC
Confidence 357899999999999999974
No 183
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=90.13 E-value=0.15 Score=34.53 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=18.9
Q ss_pred CcccccccccccccCCCCCCcc
Q 047084 373 LPIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~~~ 394 (437)
-...|+.||..||..+.|+.+.
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCcceeECCCCCCccCcCCCcc
Confidence 3578999999999999999875
No 184
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=89.93 E-value=0.11 Score=34.49 Aligned_cols=20 Identities=40% Similarity=0.884 Sum_probs=18.0
Q ss_pred ccccccccccccCCCCCCcc
Q 047084 375 IICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~ 394 (437)
..|+.||..||..+.|+.++
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSSC
T ss_pred CEeCCCCCcCCccCCCcCcC
Confidence 57999999999999999754
No 185
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=89.21 E-value=0.18 Score=35.71 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=14.6
Q ss_pred CcccccccccccccCCCCCC
Q 047084 373 LPIICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~ 392 (437)
.+..||.||..||..+.|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 34667778877887777775
No 186
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=89.01 E-value=0.14 Score=36.26 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.0
Q ss_pred ccccccccccccCCCCCCcc
Q 047084 375 IICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~ 394 (437)
..|+.||..||..+.|+...
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTGG
T ss_pred CccCCcCCcCCccCcCcCCc
Confidence 47999999999999999865
No 187
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=87.74 E-value=0.1 Score=35.36 Aligned_cols=20 Identities=35% Similarity=0.843 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCCCcc
Q 047084 375 IICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~ 394 (437)
..||.||..||..+.|+...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp --------------------
T ss_pred CccccCCCCCcCHhhCcCCC
Confidence 36999999999999999864
No 188
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=87.72 E-value=0.18 Score=30.54 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.0
Q ss_pred cccccccccccccCCCCCCcc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~ 394 (437)
.++|..|..+||...+|...+
T Consensus 20 RpYCd~CEvFGH~t~~Cndde 40 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCNDDE 40 (42)
T ss_dssp -CEETTTTEESSCGGGCCTTC
T ss_pred CcccccccccCcccccCCccc
Confidence 479999999999999997654
No 189
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=86.75 E-value=0.17 Score=36.76 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=17.6
Q ss_pred cCcccccccccccccCCCCCCcc
Q 047084 372 GLPIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 372 ~lp~~C~~cg~~gH~~~~C~~~~ 394 (437)
|-..+|+.||..||..+.||...
T Consensus 3 ~k~~~C~~Cg~~GH~~~~Cp~~~ 25 (83)
T 3nyb_B 3 WKKVQCTLCKSKKHSKERCPSIW 25 (83)
T ss_dssp ----CCSSSCCSSSCGGGCGGGT
T ss_pred cccCCCCCCCCCCCccccCCCcc
Confidence 34678999999999999999854
No 190
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=86.69 E-value=0.22 Score=40.67 Aligned_cols=20 Identities=30% Similarity=0.755 Sum_probs=16.7
Q ss_pred ccccccccccccCCCCCCcc
Q 047084 375 IICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~~~ 394 (437)
..|+.||..||..+.|+.+.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~ 117 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPP 117 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCC
T ss_pred CcccEeCCccchhhhCCCCC
Confidence 46999999999999998743
No 191
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=82.84 E-value=0.44 Score=28.99 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.9
Q ss_pred cccccccccccccCCCCCCcc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQ 394 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~ 394 (437)
.++|..|-.+||...+|...+
T Consensus 20 RpYCe~CEVFGH~t~eC~dde 40 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCNDDE 40 (42)
T ss_dssp CCEETTTTEESSCGGGCCTTC
T ss_pred CcccccceecccccccCCccc
Confidence 689999999999999998754
No 192
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=81.49 E-value=0.51 Score=38.46 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.9
Q ss_pred cccccccccccccCCCCCCcccc
Q 047084 374 PIICYQCGKYGHNSIVCQSKQKM 396 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~C~~~~~~ 396 (437)
+..|+.||..||..+.||.....
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~~~ 141 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKAQQ 141 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTTC-
T ss_pred CCcccccCCcCCEeccCcCCCCC
Confidence 78999999999999999986544
No 193
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=73.71 E-value=1.3 Score=34.81 Aligned_cols=20 Identities=40% Similarity=0.880 Sum_probs=18.1
Q ss_pred CcccccccccccccCCCCCC
Q 047084 373 LPIICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 373 lp~~C~~cg~~gH~~~~C~~ 392 (437)
-...|+.||..||..++||.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 35799999999999999986
No 194
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=72.51 E-value=1.4 Score=34.57 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=6.0
Q ss_pred ccccccccccCCCCC
Q 047084 377 CYQCGKYGHNSIVCQ 391 (437)
Q Consensus 377 C~~cg~~gH~~~~C~ 391 (437)
|+.||..||....||
T Consensus 7 C~~C~~~GH~~~~Cp 21 (124)
T 2lli_A 7 CNNCSQRGHLKKDCP 21 (124)
T ss_dssp CSSCSSSSCCTTTTT
T ss_pred ccCCCCCCcCcccCc
Confidence 344444444443333
No 195
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=62.33 E-value=63 Score=26.42 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=53.6
Q ss_pred EEEEEeCChhhHHHhHHcCceEEcCceEEEeecCCCCCCCcccccceeEEEEecCCccccccHHHHHHHhhccCcEEEEe
Q 047084 252 YFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKID 331 (437)
Q Consensus 252 ~f~~~f~~~~d~~~vl~~~pw~~~~~~l~l~~w~~~~~~~~~~~~~~p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd 331 (437)
+--+.|.+.++...++......+.+..+.+....+........-....--|-+.+||.. .+++-+..+-+..|.+..+.
T Consensus 57 ~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~ 135 (196)
T 1l3k_A 57 FGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKED-TEEHHLRDYFEQYGKIEVIE 135 (196)
T ss_dssp EEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTT-CCHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCC-CCHHHHHHHHhcCCCeEEEE
Confidence 33458999999999998888889998888876554322211111111234567899976 46777777788899988776
Q ss_pred ccc
Q 047084 332 YHT 334 (437)
Q Consensus 332 ~~~ 334 (437)
...
T Consensus 136 i~~ 138 (196)
T 1l3k_A 136 IMT 138 (196)
T ss_dssp EEE
T ss_pred Eee
Confidence 654
No 196
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=56.55 E-value=3.4 Score=26.99 Aligned_cols=14 Identities=36% Similarity=0.933 Sum_probs=10.8
Q ss_pred Ccccccccccc-ccc
Q 047084 373 LPIICYQCGKY-GHN 386 (437)
Q Consensus 373 lp~~C~~cg~~-gH~ 386 (437)
.|..||.||++ ||.
T Consensus 2 iPVRCFTCGkvi~~~ 16 (55)
T 1ef4_A 2 IPVRCLSCGKPVSAY 16 (55)
T ss_dssp CSSSCSCTTSCCHHH
T ss_pred CCeecCCCCCChhHH
Confidence 58899999975 443
No 197
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=54.68 E-value=4 Score=27.75 Aligned_cols=14 Identities=36% Similarity=1.153 Sum_probs=10.9
Q ss_pred Ccccccccccc-ccc
Q 047084 373 LPIICYQCGKY-GHN 386 (437)
Q Consensus 373 lp~~C~~cg~~-gH~ 386 (437)
.|..||.||++ ||.
T Consensus 3 IPVRCFTCGkvi~~k 17 (66)
T 4ayb_N 3 IPIRCFTCGSLIADK 17 (66)
T ss_dssp CCSBCTTTCCBCHHH
T ss_pred CCcccCCCcHhHHHH
Confidence 58999999985 443
No 198
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=52.63 E-value=4.5 Score=27.88 Aligned_cols=13 Identities=46% Similarity=1.385 Sum_probs=10.5
Q ss_pred Ccccccccccc-cc
Q 047084 373 LPIICYQCGKY-GH 385 (437)
Q Consensus 373 lp~~C~~cg~~-gH 385 (437)
.|..||.||++ ||
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 58999999985 44
No 199
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=46.49 E-value=15 Score=26.44 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=36.4
Q ss_pred cCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEEE
Q 047084 305 PGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVR 348 (437)
Q Consensus 305 ~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V~ 348 (437)
..||.-..+.-+...+|-.-|.++++.-.+......-|.|++|.
T Consensus 40 ~qLP~I~~~DPva~~~g~k~GdVvkI~R~S~tag~~~~YR~vv~ 83 (84)
T 4ayb_H 40 EQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVIS 83 (84)
T ss_dssp GGSCCEESSSHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred hHCCeecccCHhHHhhCCCCCCEEEEEEcCCCCCccEEEEEEeC
Confidence 46888888999999999999999999988765555668888874
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=45.96 E-value=84 Score=27.81 Aligned_cols=86 Identities=23% Similarity=0.221 Sum_probs=56.5
Q ss_pred CcEEEEEeCChhhHHHhHH-cCceEEcCceEEEeecCCCCCCCcc-cccceeEEEEecCCccccccHHHHHHHhhccCcE
Q 047084 250 NNYFLIRLKSPEDAVYALT-EGPWVIFGHYLTVQPWTPQFDSTTT-DLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNV 327 (437)
Q Consensus 250 ~N~f~~~f~~~~d~~~vl~-~~pw~~~~~~l~l~~w~~~~~~~~~-~~~~~p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~ 327 (437)
.++--+.|.+.++...++. -.-..+.+..+.+..-.+....... ......--|.+.+||..+.+++-+..+-+..|.+
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v 238 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSI 238 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCE
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCe
Confidence 3445568999999998876 5667778888887655544322111 0111112345678998867888888889999999
Q ss_pred EEEecccc
Q 047084 328 IKIDYHTA 335 (437)
Q Consensus 328 l~vd~~~~ 335 (437)
..+.....
T Consensus 239 ~~v~i~~~ 246 (292)
T 2ghp_A 239 EKINIPAG 246 (292)
T ss_dssp EEEECCSC
T ss_pred eEEEEEec
Confidence 99887654
No 201
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=42.61 E-value=11 Score=28.06 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=17.8
Q ss_pred cccccccccc---ccCCCCCCcccc
Q 047084 375 IICYQCGKYG---HNSIVCQSKQKM 396 (437)
Q Consensus 375 ~~C~~cg~~g---H~~~~C~~~~~~ 396 (437)
..|-.||.-| |..+.||.....
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~ 96 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKN 96 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGG
T ss_pred ccCCCCCCcCCcccceecCCCCCCc
Confidence 5688888888 999999987644
No 202
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=33.29 E-value=1.5e+02 Score=23.52 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=71.1
Q ss_pred CCcEEEEEeCChhhHHHhHHcCceEEcCceEEEeecCCCCCCCcccccceeEEEEecCCccccccHHHHHHHhhccCcEE
Q 047084 249 ENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVI 328 (437)
Q Consensus 249 ~~N~f~~~f~~~~d~~~vl~~~pw~~~~~~l~l~~w~~~~~~~~~~~~~~p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l 328 (437)
+.++--+.|.+.++...++.-.-..+.+..+.+....+.-... .-. .--+-+.+||... +++-+..+-+.+|.+.
T Consensus 53 ~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~--~~~--~~~l~v~nlp~~~-t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKK--VRA--ARTLLAKNLSFNI-TEDELKEVFEDALEIR 127 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCST--TGG--GGEEEEESCCSSC-CHHHHHHHCTTCSEEE
T ss_pred cccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccc--ccc--CCEEEEeCCCCCC-CHHHHHHHHHhcCeEE
Confidence 4456667899999999988877788899988887655432211 112 2234567999764 6777777788899988
Q ss_pred EEecccccccCCcEEEEEE--EeeCCCCce--eEEEEeCeEEEEEEcc
Q 047084 329 KIDYHTALRERGKFARIAV--RISLSQPLL--SRFNIDGKIQKVEYEG 372 (437)
Q Consensus 329 ~vd~~~~~~~~~~~~rv~V--~id~~kpl~--~~i~~~g~~~~v~YE~ 372 (437)
.+ .. ....+ .|+-|.. .-+..+-+. ....++|+.+.|+|-.
T Consensus 128 ~~-~~-~~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 128 LV-SQ-DGKSK-GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp EE-CS-SSSCC-SEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred Ee-cC-CCCCc-eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 77 21 12222 2433331 112222221 3566778888888754
No 203
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.74 E-value=13 Score=24.32 Aligned_cols=16 Identities=44% Similarity=1.250 Sum_probs=12.7
Q ss_pred ccccccccccccCCCCCC
Q 047084 375 IICYQCGKYGHNSIVCQS 392 (437)
Q Consensus 375 ~~C~~cg~~gH~~~~C~~ 392 (437)
++|-.||+||-+ .|..
T Consensus 20 PvCvvCGryGeY--ICd~ 35 (60)
T 2yqp_A 20 PICVVCGRYGEY--ICDK 35 (60)
T ss_dssp CCCSSSSSCCSE--ECSS
T ss_pred ceEEEecCccce--eecC
Confidence 679999999986 4543
No 204
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=26.50 E-value=52 Score=23.18 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=33.7
Q ss_pred ecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEEE
Q 047084 304 LPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVR 348 (437)
Q Consensus 304 i~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V~ 348 (437)
...||.-..+.-+...+|..-|.++++--.+....+.-+.|+.|+
T Consensus 31 ~~qLPrI~~~DPvar~~G~k~GdVvkI~R~S~taG~~v~YR~Vv~ 75 (78)
T 1hmj_A 31 IQQLPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAGVSIAYRLVIK 75 (78)
T ss_pred HHHCCeeeCcCHhhHHhCCCCCCEEEEEECCCCCCCcEEEEEEEe
Confidence 346777778888999999999999999877655444455566554
No 205
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=25.35 E-value=47 Score=23.79 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.4
Q ss_pred EEEeCeEEEEEEccCcccccccccc
Q 047084 359 FNIDGKIQKVEYEGLPIICYQCGKY 383 (437)
Q Consensus 359 i~~~g~~~~v~YE~lp~~C~~cg~~ 383 (437)
+...|+.|....=..|-||.+|+.+
T Consensus 20 ~~~~~H~F~~~~~~~PT~Cd~C~~~ 44 (84)
T 2row_A 20 ICHKGHEFIPTLYHFPTNCEACMKP 44 (84)
T ss_dssp EEETTEEEEEECCSSCEECSSSSSE
T ss_pred EEcCCcceEeEcCCCCcchhhcCHh
Confidence 3456888888888899999999864
No 206
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=25.02 E-value=1.6e+02 Score=22.56 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=26.2
Q ss_pred ceeEEEEecCCccccccHHHHHHHhhccCcEEEEec
Q 047084 297 SAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDY 332 (437)
Q Consensus 297 ~~p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~ 332 (437)
..+.||-+.|.|..- ...++..+. .+|++++...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~-~~G~Iv~~~~ 55 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFA-QYGNILKHVM 55 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHH-TTSCEEEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHH-hhCcEEEecc
Confidence 347899999999884 556666655 4899998776
No 207
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.75 E-value=85 Score=23.03 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=24.6
Q ss_pred CCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEcc
Q 047084 8 APVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLK 52 (437)
Q Consensus 8 n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~ 52 (437)
..++.|.. .|.++..|+.+.+..+ +..|. .+|.++.+|+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34555544 4566666666666554 33443 345556666666665
No 208
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=23.06 E-value=24 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.806 Sum_probs=13.1
Q ss_pred cccccccccccccCCC
Q 047084 374 PIICYQCGKYGHNSIV 389 (437)
Q Consensus 374 p~~C~~cg~~gH~~~~ 389 (437)
...|-.||++||....
T Consensus 6 ~~~CE~CG~~g~~~~F 21 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAF 21 (43)
T ss_dssp EEECTTTCCEEETTTS
T ss_pred eehhhhhcCcchhhhh
Confidence 4679999999997664
No 209
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.84 E-value=75 Score=23.36 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=25.0
Q ss_pred CcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEecee
Q 047084 33 VKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQ 76 (437)
Q Consensus 33 l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~ 76 (437)
+..|. .+|.++++|+.+.+..+ ++.|.. .|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444 45666777777777644 333433 366677777666654
No 210
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=21.08 E-value=3.1e+02 Score=23.63 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=59.9
Q ss_pred CcCHHHHHHHHHhcccCCCceEEEEc--CCcEEEEEeCChhhHHHhHH-cCceEEcCceEEEeecCCCCCCCccccccee
Q 047084 223 NIGYKVLCNRLKVMWHQIHDFSVIDL--ENNYFLIRLKSPEDAVYALT-EGPWVIFGHYLTVQPWTPQFDSTTTDLDSAI 299 (437)
Q Consensus 223 ~ls~n~l~~~l~~~w~~~~~l~~l~l--~~N~f~~~f~~~~d~~~vl~-~~pw~~~~~~l~l~~w~~~~~~~~~~~~~~p 299 (437)
..+...|.. .|...+.+..+.+ +.++--+.|.+.++...++. -.-..+.+..+.+....+.
T Consensus 33 ~~te~~l~~----~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~------------ 96 (261)
T 3sde_A 33 DITEEDFKR----LFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG------------ 96 (261)
T ss_dssp TCCHHHHHH----HTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS------------
T ss_pred CCCHHHHHH----HHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC------------
Confidence 344444443 4444444433333 34555568999999998865 4556678888777654432
Q ss_pred EEEEecCCccccccHHHHHHHhhccCcEEEEecc
Q 047084 300 VWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYH 333 (437)
Q Consensus 300 ~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~ 333 (437)
.-|.+.+||... ++.-+..+-+..|.+..+...
T Consensus 97 ~~l~v~nl~~~~-t~~~l~~~F~~~G~i~~v~i~ 129 (261)
T 3sde_A 97 AALTVKNLSPVV-SNELLEQAFSQFGPVEKAVVV 129 (261)
T ss_dssp SEEEEESCCTTC-CHHHHHHHHGGGSCEEEEEEE
T ss_pred CcccccCCCCCC-CHHHHHHHHHhcCCeEEEEee
Confidence 135678999655 777788888888988776554
No 211
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=20.04 E-value=38 Score=23.83 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=31.0
Q ss_pred ecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEE
Q 047084 304 LPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIA 346 (437)
Q Consensus 304 i~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~ 346 (437)
-..||.-..+.-+...+|...|.++++--.+. +.|.|+--|
T Consensus 33 ~~qLP~I~~~DPvar~~G~k~GdVvkI~R~S~--taG~~v~YR 73 (77)
T 1eik_A 33 PEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP--TAEEFVTYR 73 (77)
T ss_dssp TTTSCCCBTTSHHHHGGGCCTTCEEEEEEEET--TTEEEEEEE
T ss_pred HHHCCeeeCcCHhhHHhCCCCCCEEEEEECCC--CCCCcEEEE
Confidence 35688888889999999999999999977644 445444433
Done!