BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047089
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTP-- 80
+ +E + LA P+ +V Q + V T+M G + + +A+++IA S+ + P
Sbjct: 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-----WLPSI 61
Query: 81 LFGFAC--ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQ 138
LFG AL + Q GA + KI + + + + +PI + I+ +
Sbjct: 62 LFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV 121
Query: 139 NPQISVEARNY---AIWLIPALFGYAILRSLCHNL 170
++ + Y I+ +PA + LRS +
Sbjct: 122 EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGM 156
>pdb|1YEW|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
Length = 382
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 84 FACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAIC 119
F + TL GQ E Y + TY + A +F I +
Sbjct: 134 FRNPVTTLTGQTVDLENYNEGNTYFWHAFWFAIGVA 169
>pdb|3RGB|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
Length = 414
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 84 FACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAIC 119
F + TL GQ E Y + TY + A +F I +
Sbjct: 166 FRNPVTTLTGQTVDLENYNEGNTYFWHAFWFAIGVA 201
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFT 79
++ L ++NF L +T + L V +M + +A IT +LTN+TG T
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN----QIADITPLANLTNLTGLT 113
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFT 79
++ L ++NF L +T + L V +M + +A IT +LTN+TG T
Sbjct: 66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN----QIADITPLANLTNLTGLT 118
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFT 79
++ L ++NF L +T + L V +M + +A IT +LTN+TG T
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN----QIADITPLANLTNLTGLT 113
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFT 79
++ L ++NF L +T + L V +M + +A IT +LTN+TG T
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN----QIADITPLANLTNLTGLT 113
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFT 79
++ L ++NF L +T + L V +M + +A IT +LTN+TG T
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN----QIADITPLANLTNLTGLT 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,309,447
Number of Sequences: 62578
Number of extensions: 140006
Number of successful extensions: 265
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 11
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)