Query 047089
Match_columns 183
No_of_seqs 114 out of 1614
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 99.9 5.1E-26 1.1E-30 184.6 21.1 159 23-182 12-171 (455)
2 PRK00187 multidrug efflux prot 99.9 1.8E-25 3.8E-30 182.2 21.4 160 22-182 4-163 (464)
3 PRK10189 MATE family multidrug 99.9 1.7E-24 3.7E-29 176.9 22.6 157 25-182 26-185 (478)
4 COG0534 NorM Na+-driven multid 99.9 1.5E-24 3.2E-29 176.1 20.9 165 17-182 230-395 (455)
5 PRK10367 DNA-damage-inducible 99.9 2.7E-24 5.9E-29 174.1 20.7 158 24-182 5-164 (441)
6 PRK00187 multidrug efflux prot 99.9 2.7E-24 5.8E-29 175.3 20.5 161 21-182 229-395 (464)
7 PRK01766 multidrug efflux prot 99.9 1E-23 2.2E-28 171.5 20.3 160 22-182 233-393 (456)
8 PRK01766 multidrug efflux prot 99.9 3.2E-23 6.9E-28 168.6 21.4 160 22-182 6-166 (456)
9 PRK09575 vmrA multidrug efflux 99.9 3.2E-23 7E-28 168.5 19.5 158 24-182 8-167 (453)
10 PRK09575 vmrA multidrug efflux 99.9 3.1E-23 6.7E-28 168.6 18.8 162 20-182 226-390 (453)
11 PRK10189 MATE family multidrug 99.9 4.4E-23 9.6E-28 168.6 19.7 160 22-182 253-413 (478)
12 PRK10367 DNA-damage-inducible 99.9 1.3E-21 2.9E-26 158.5 21.3 157 25-182 229-389 (441)
13 PF01554 MatE: MatE; InterPro 99.9 5.6E-24 1.2E-28 150.1 2.4 146 36-182 1-147 (162)
14 TIGR01695 mviN integral membra 99.8 1.9E-19 4.1E-24 147.9 19.1 162 21-182 216-382 (502)
15 TIGR00797 matE putative efflux 99.8 1.4E-18 3E-23 136.2 19.1 146 36-182 1-147 (342)
16 TIGR00797 matE putative efflux 99.8 2.2E-17 4.8E-22 129.4 16.8 133 20-153 208-341 (342)
17 PF03023 MVIN: MviN-like prote 99.8 1.2E-16 2.6E-21 130.0 19.7 165 18-182 188-357 (451)
18 COG0728 MviN Uncharacterized m 99.7 5.4E-16 1.2E-20 126.1 19.1 166 18-183 222-392 (518)
19 TIGR02900 spore_V_B stage V sp 99.7 5.6E-16 1.2E-20 126.9 18.0 156 22-182 219-386 (488)
20 KOG1347 Uncharacterized membra 99.7 9.2E-16 2E-20 124.8 15.0 159 24-182 24-182 (473)
21 PRK15099 O-antigen translocase 99.6 4.6E-14 9.9E-19 113.8 19.6 156 20-180 207-364 (416)
22 PRK10459 colanic acid exporter 99.6 5.9E-14 1.3E-18 115.3 17.6 156 22-181 201-358 (492)
23 COG2244 RfbX Membrane protein 99.6 1.3E-13 2.9E-18 112.8 15.4 157 23-182 208-366 (480)
24 TIGR02900 spore_V_B stage V sp 99.6 4.1E-13 8.8E-18 110.1 17.6 147 31-181 2-150 (488)
25 TIGR01695 mviN integral membra 99.5 2.3E-12 5E-17 106.0 17.9 151 30-182 2-159 (502)
26 KOG1347 Uncharacterized membra 99.4 1.8E-11 3.9E-16 99.8 16.6 158 24-182 243-403 (473)
27 PRK15099 O-antigen translocase 99.2 8.8E-10 1.9E-14 88.9 14.6 146 30-181 3-150 (416)
28 PF03023 MVIN: MviN-like prote 98.9 2.1E-07 4.6E-12 76.1 16.4 124 57-181 4-132 (451)
29 COG0728 MviN Uncharacterized m 98.7 3.8E-06 8.3E-11 69.2 18.4 155 27-181 6-167 (518)
30 PF01943 Polysacc_synt: Polysa 98.2 1.8E-05 3.8E-10 59.6 10.2 73 23-96 200-273 (273)
31 PRK10459 colanic acid exporter 98.1 0.00019 4.1E-09 59.3 15.2 139 28-180 5-145 (492)
32 PF01943 Polysacc_synt: Polysa 98.1 0.00077 1.7E-08 50.7 17.0 140 31-180 2-142 (273)
33 COG2244 RfbX Membrane protein 98.0 0.00021 4.4E-09 58.8 13.2 145 26-180 4-150 (480)
34 PF04506 Rft-1: Rft protein; 98.0 0.00023 5E-09 59.6 12.7 152 27-178 252-416 (549)
35 PF07260 ANKH: Progressive ank 97.8 0.0041 8.8E-08 48.2 16.4 145 25-176 8-158 (345)
36 PF13440 Polysacc_synt_3: Poly 97.8 0.0043 9.3E-08 46.2 15.9 121 47-180 3-124 (251)
37 PF13440 Polysacc_synt_3: Poly 97.4 0.002 4.4E-08 48.0 9.3 67 29-95 184-251 (251)
38 KOG2864 Nuclear division RFT1 96.9 0.021 4.6E-07 46.4 11.3 151 28-178 239-396 (530)
39 PF04505 Dispanin: Interferon- 67.1 27 0.00059 21.5 5.9 41 84-124 36-76 (82)
40 PF03904 DUF334: Domain of unk 65.3 50 0.0011 24.7 7.0 62 100-161 142-212 (230)
41 PF07260 ANKH: Progressive ank 59.1 38 0.00082 26.9 5.8 100 23-124 230-340 (345)
42 PF00689 Cation_ATPase_C: Cati 48.9 91 0.002 21.8 7.7 59 81-140 97-156 (182)
43 COG4176 ProW ABC-type proline/ 43.2 1.6E+02 0.0034 22.9 7.1 77 25-106 200-286 (290)
44 COG3924 Predicted membrane pro 40.9 81 0.0018 19.0 4.7 68 100-168 4-71 (80)
45 TIGR00427 membrane protein, Ma 38.2 1.6E+02 0.0034 21.5 9.4 59 86-147 21-79 (201)
46 PF15012 DUF4519: Domain of un 38.2 47 0.001 18.9 2.6 24 21-44 21-44 (56)
47 PF08837 DUF1810: Protein of u 34.8 1.5E+02 0.0033 20.4 7.2 88 91-179 48-135 (139)
48 PF07782 DC_STAMP: DC-STAMP-li 33.5 78 0.0017 22.8 3.9 40 16-55 38-77 (191)
49 PRK11111 hypothetical protein; 33.2 2E+02 0.0044 21.3 9.3 56 89-147 27-82 (214)
50 COG0170 SEC59 Dolichol kinase 30.7 2.1E+02 0.0046 21.1 5.9 23 77-99 118-140 (216)
51 COG1987 FliQ Flagellar biosynt 29.9 1.5E+02 0.0032 18.7 8.1 51 101-151 3-53 (89)
52 COG4794 EscS Type III secretor 28.9 1.5E+02 0.0033 18.6 8.0 38 100-137 2-39 (89)
53 TIGR00814 stp serine transport 28.5 3.3E+02 0.0071 22.3 13.7 49 76-124 193-246 (397)
54 PF02592 DUF165: Uncharacteriz 27.0 2.1E+02 0.0046 19.5 9.6 81 81-168 6-86 (145)
55 PRK13629 threonine/serine tran 26.5 3.9E+02 0.0084 22.4 15.5 70 71-140 211-291 (443)
56 PF03814 KdpA: Potassium-trans 26.4 4.2E+02 0.0092 22.8 7.9 42 83-124 138-179 (552)
57 KOG2468 Dolichol kinase [Lipid 25.1 83 0.0018 26.2 3.0 43 78-120 415-457 (510)
58 PF01914 MarC: MarC family int 23.3 3E+02 0.0066 20.1 12.0 58 87-147 19-76 (203)
59 TIGR00697 conserved hypothetic 23.0 3.1E+02 0.0067 20.1 9.3 42 80-124 37-78 (202)
60 PF04854 DUF624: Protein of un 23.0 1.7E+02 0.0038 17.2 4.8 18 24-41 49-66 (77)
61 PF01169 UPF0016: Uncharacteri 22.6 1.9E+02 0.0042 17.5 7.5 62 51-112 6-73 (78)
62 PF10785 NADH-u_ox-rdase: NADH 21.3 2.2E+02 0.0048 17.7 5.4 56 83-138 29-84 (86)
63 PRK15350 type III secretion sy 21.1 2.3E+02 0.0049 17.8 8.1 52 100-151 2-53 (88)
64 PRK06010 fliQ flagellar biosyn 20.6 2.3E+02 0.0051 17.8 8.1 52 100-151 2-53 (88)
65 KOG1419 Voltage-gated K+ chann 20.6 5.3E+02 0.011 22.5 6.7 44 125-168 102-146 (654)
66 PRK10739 putative antibiotic t 20.0 3.6E+02 0.0078 19.7 11.9 58 87-147 19-76 (197)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.95 E-value=5.1e-26 Score=184.61 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ 102 (183)
Q Consensus 23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (183)
+++.+|+++++++|.+++++...+++++|+.++||+|++++||.++++++..++ +.+..|++.|..+++||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 457899999999999999999999999999999999999999999999999975 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 103 KIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
++++..++++.++++++++.++ .+.++++++.+++.++|+.+.+.+|+++..++.|+..+..++.+++|+.||+|.+|+
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999988887 688999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 047089 182 S 182 (183)
Q Consensus 182 ~ 182 (183)
+
T Consensus 171 ~ 171 (455)
T COG0534 171 I 171 (455)
T ss_pred H
Confidence 5
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=1.8e-25 Score=182.20 Aligned_cols=160 Identities=23% Similarity=0.233 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089 22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY 101 (183)
Q Consensus 22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (183)
++++.+|+++++++|.+++++...+...+|+.+++|+|++++|+++++.++.++. ..+..|++++.++++||++|+||+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3567899999999999999999999999999999999999999999999999965 888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 102 QKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
++++++.++++.++++++++..++..+.++++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999999887655779999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 047089 182 S 182 (183)
Q Consensus 182 ~ 182 (183)
.
T Consensus 163 ~ 163 (464)
T PRK00187 163 I 163 (464)
T ss_pred H
Confidence 5
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.94 E-value=1.7e-24 Score=176.86 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=149.6
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089 25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI 104 (183)
Q Consensus 25 ~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 104 (183)
+.+|+++++++|.++++++..+...+|+.++|++|++++|+++++.++.++ .+.+..|++++.++++||++|+||+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 459999999999999999999999999999999999999999999999996 4889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 105 GTYTYSAMFFCIAICLPISV-LWIFMDKILMLLH--QNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
++..++++.+++.++++.++ .+.++++++++++ .|+|+.+.+.+|+++..++.|+..+..++.+++||.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 99999999999999999988 5778999999994 79999999999999999999999999999999999999999987
Q ss_pred c
Q 047089 182 S 182 (183)
Q Consensus 182 ~ 182 (183)
+
T Consensus 185 i 185 (478)
T PRK10189 185 I 185 (478)
T ss_pred H
Confidence 5
No 4
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=1.5e-24 Score=176.10 Aligned_cols=165 Identities=24% Similarity=0.257 Sum_probs=157.5
Q ss_pred hhhhhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 047089 17 AVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAY 96 (183)
Q Consensus 17 ~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~ 96 (183)
.+.++.+++.+|+++++++|.+++++.+......-+.+++++|++.+|+++++.++.++. +++..|++++.+++++|++
T Consensus 230 ~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~ 308 (455)
T COG0534 230 KKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNL 308 (455)
T ss_pred hhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 334466779999999999999999999999999999999999999999999999999975 9999999999999999999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc
Q 047089 97 GAEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSL 175 (183)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 175 (183)
|+||+|++++..+.+..++.++++...+ ++.+++++.++|..|+|+.+.+..++++.....++.+.+.+..+++||.||
T Consensus 309 Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~ 388 (455)
T COG0534 309 GAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGD 388 (455)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998 688999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q 047089 176 ILTLFLS 182 (183)
Q Consensus 176 ~~~~~~~ 182 (183)
+|.++++
T Consensus 389 ~~~~~~~ 395 (455)
T COG0534 389 AKIPFII 395 (455)
T ss_pred cHHHHHH
Confidence 9999875
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.93 E-value=2.7e-24 Score=174.14 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=149.8
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089 24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ 102 (183)
Q Consensus 24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (183)
.+..|+++++++|.+++++...+.+.+|+.++||+ |++++|+.+++.++.++. ..+..+++.+.++++||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 35689999999999999999999999999999999 788999999999999965 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 103 KIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
++++..++++.++++++++..+ ...+.++++++++.|+|+.+.+.+|+++.+++.|+..+..++.+++|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 9999999999999999999887 477889999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 047089 182 S 182 (183)
Q Consensus 182 ~ 182 (183)
.
T Consensus 164 ~ 164 (441)
T PRK10367 164 L 164 (441)
T ss_pred H
Confidence 5
No 6
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=2.7e-24 Score=175.26 Aligned_cols=161 Identities=20% Similarity=0.224 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089 21 RAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ 100 (183)
Q Consensus 21 ~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 100 (183)
+.+++.+|+++++++|.+++++.+.....+|+.+++++|++++|+++++.++..+ .+.+..|++++.++++||++|+||
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566789999999999999999999999999999999999999999999999996 588999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC--Ch---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Q 047089 101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQ--NP---QISVEARNYAIWLIPALFGYAILRSLCHNLQAQS 174 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 174 (183)
+|++++..+.++.++.+++++.++ ++.+++++.++|.. |+ |+.+.+..|+++.+++.++.+++.++.+++||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 999999999999999999999888 57899999999953 43 7899999999999999999999999999999999
Q ss_pred chhhhhcc
Q 047089 175 LILTLFLS 182 (183)
Q Consensus 175 ~~~~~~~~ 182 (183)
|+|.++++
T Consensus 388 ~~~~~~~~ 395 (464)
T PRK00187 388 DARTTFLI 395 (464)
T ss_pred ccHHHHHH
Confidence 99999875
No 7
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=1e-23 Score=171.50 Aligned_cols=160 Identities=21% Similarity=0.303 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089 22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY 101 (183)
Q Consensus 22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (183)
.+++.+|+++++++|.+++++.+.+...+++.+++++|++++|+++++.++.++. +.+..|++.+.++.+||++|+||+
T Consensus 233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 4567899999999999999999999999999999999999999999999999965 889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
+++++..+.++.+++.++++.++ ++.+++++.++|+.|+|+.+.+..|+++..+..++.+++.+..+++||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 99999999999999999999888 57899999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 047089 181 LS 182 (183)
Q Consensus 181 ~~ 182 (183)
+.
T Consensus 392 ~~ 393 (456)
T PRK01766 392 FI 393 (456)
T ss_pred HH
Confidence 65
No 8
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=3.2e-23 Score=168.60 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089 22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY 101 (183)
Q Consensus 22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (183)
.+++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++..+ ...+..|++.+..|.+||++|++|+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 446789999999999999999999999999999999999999999999999875 4778999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
+++++..++++.+++++++++++ ++.++++++.+++.|+++.+.+..|+++.+++.++..+..++++++|+.|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999888 57788999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 047089 181 LS 182 (183)
Q Consensus 181 ~~ 182 (183)
+.
T Consensus 165 ~~ 166 (456)
T PRK01766 165 VI 166 (456)
T ss_pred HH
Confidence 64
No 9
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=3.2e-23 Score=168.52 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=150.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089 24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ 102 (183)
Q Consensus 24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (183)
++.+|+++++++|.++++++..++..+|+.++|++ |++++++++++.++.++. ..+..+++.+.++++||++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45789999999999999999999999999999997 999999999999999964 7789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 103 KIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
++++..+++++++++++++.++ ++.++++++++++.|+++.+.+.+|+++..++.++..+.....+++|+.|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999999988 577999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 047089 182 S 182 (183)
Q Consensus 182 ~ 182 (183)
.
T Consensus 167 ~ 167 (453)
T PRK09575 167 L 167 (453)
T ss_pred H
Confidence 4
No 10
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=3.1e-23 Score=168.61 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=151.8
Q ss_pred hhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCc
Q 047089 20 RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGK-LSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGA 98 (183)
Q Consensus 20 ~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~-~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~ 98 (183)
++.+++.+|+++++++|..+++....+...+.+.+++++|+ +++|+++++.++.++ .+.+..|++.+.++++||++|+
T Consensus 226 ~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga 304 (453)
T PRK09575 226 LRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGA 304 (453)
T ss_pred CCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcC
Confidence 34567789999999999999999999999999999999985 689999999999996 4889999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccch
Q 047089 99 EQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQ-NPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLI 176 (183)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 176 (183)
||+||+++..++++.+++..+++.++ ++.+++++.++|+. |+|+.+.+..|+++.+++.++.+++.+..+++||.||+
T Consensus 305 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~ 384 (453)
T PRK09575 305 RQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQG 384 (453)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999998 57799999999985 78999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 047089 177 LTLFLS 182 (183)
Q Consensus 177 ~~~~~~ 182 (183)
+.+++.
T Consensus 385 ~~~~~~ 390 (453)
T PRK09575 385 GKALFI 390 (453)
T ss_pred HHHHHH
Confidence 998864
No 11
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=4.4e-23 Score=168.57 Aligned_cols=160 Identities=14% Similarity=0.034 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089 22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY 101 (183)
Q Consensus 22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (183)
.+++.+|+++++++|..++++...+...+.+.+++++|++++|+++++.++.++. +.+..|++++.++++||++|+||.
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3568899999999999999999999999999999999999999999999999964 889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
+++|+..+.+..+++++++.+++ ++.+++++.++|..|+|+.+.+..++++.+...++.+++.+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 99999999999999999999998 57899999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 047089 181 LS 182 (183)
Q Consensus 181 ~~ 182 (183)
++
T Consensus 412 ~i 413 (478)
T PRK10189 412 WV 413 (478)
T ss_pred HH
Confidence 64
No 12
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=1.3e-21 Score=158.48 Aligned_cols=157 Identities=22% Similarity=0.180 Sum_probs=140.6
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089 25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI 104 (183)
Q Consensus 25 ~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 104 (183)
+.+|++++++.|..++++.......+-+.+++++|++++|+++++.++.++. +.+..|+++|.++++||++|+||+|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 4789999999999999999999999999999999999999999999999964 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc---chhhhh
Q 047089 105 GTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQS---LILTLF 180 (183)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~ 180 (183)
|+..+.+..++..+++..++ ++.+++++.++|.+|+|+.+.+..++++.+...+........+++++|.+ |+|.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999998 57799999999999999999999999999876443334545555555555 599988
Q ss_pred cc
Q 047089 181 LS 182 (183)
Q Consensus 181 ~~ 182 (183)
++
T Consensus 388 ~~ 389 (441)
T PRK10367 388 AV 389 (441)
T ss_pred HH
Confidence 75
No 13
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.88 E-value=5.6e-24 Score=150.10 Aligned_cols=146 Identities=27% Similarity=0.404 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Q 047089 36 PLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFC 115 (183)
Q Consensus 36 p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 115 (183)
|.+++++...+...+|+.+++++|++++++++++.++.++. ..+..|++.|..+.+||++|++|+|++++..++++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999964 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089 116 IAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS 182 (183)
Q Consensus 116 ~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 182 (183)
..++++.++ .+.+++++.++++.|+|+.+.+..|+++..+..++..+.....+++||.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 147 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYI 147 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 999999999 4889999999999999999999999999999999999999999999999999998764
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.85 E-value=1.9e-19 Score=147.89 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089 21 RAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ 100 (183)
Q Consensus 21 ~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 100 (183)
+.+++.+|++++.+.|..++++...+...+|+.+.+.+|++++++++.+.++.+++...+..+++++..|.+||++|+||
T Consensus 216 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~ 295 (502)
T TIGR01695 216 NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN 295 (502)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34557899999999999999999999999999997777999999999999999876444678999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc
Q 047089 101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQ----NPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSL 175 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 175 (183)
++++++.++++..+...+++|.++ ++.+++++..++.. |+|..+.+..++++++++.++.++..+..+.+++.||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~ 375 (502)
T TIGR01695 296 WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKD 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccC
Confidence 999999999999999999999998 68899999998865 5678889999999999999999999999999999999
Q ss_pred hhhhhcc
Q 047089 176 ILTLFLS 182 (183)
Q Consensus 176 ~~~~~~~ 182 (183)
+|.+++.
T Consensus 376 ~~~~~~~ 382 (502)
T TIGR01695 376 TRTPFIN 382 (502)
T ss_pred CccCHHH
Confidence 9988764
No 15
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.83 E-value=1.4e-18 Score=136.18 Aligned_cols=146 Identities=28% Similarity=0.433 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Q 047089 36 PLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFC 115 (183)
Q Consensus 36 p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 115 (183)
|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++..|.++|++|+||+|++++..+++..+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999885 488999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089 116 IAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS 182 (183)
Q Consensus 116 ~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 182 (183)
..++++.++ ++.+++++.++++.|++..+.+..|++++++..++..+..+..+++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYI 147 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999998 5779999999998888999999999999999999999999999999999999988754
No 16
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.78 E-value=2.2e-17 Score=129.40 Aligned_cols=133 Identities=26% Similarity=0.416 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcc
Q 047089 20 RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAE 99 (183)
Q Consensus 20 ~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~ 99 (183)
++.+++.+|++++.++|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++.+..|.+++++|+|
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence 445677899999999999999999999999999999999999999999999999964 8899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 047089 100 QYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWL 153 (183)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~ 153 (183)
|+++.++..++++++.+.++++.++ +..+++++.++++.|+++.+.+..++.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 67899999999999999999999998764
No 17
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.76 E-value=1.2e-16 Score=129.97 Aligned_cols=165 Identities=16% Similarity=0.069 Sum_probs=153.4
Q ss_pred hhhhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 047089 18 VTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYG 97 (183)
Q Consensus 18 ~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g 97 (183)
+.+....+..|+.++...|..++.....+...+|+.+.+.+++..+++++.+.++.+++...+..+++++..|..|+...
T Consensus 188 ~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~ 267 (451)
T PF03023_consen 188 PKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAA 267 (451)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456799999999999999999999999999999999999999999999999998778888999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 047089 98 AEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLH----QNPQISVEARNYAIWLIPALFGYAILRSLCHNLQA 172 (183)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 172 (183)
+||.++.++..++++...+.+.+|.++ ++.+++++.+++. .|.|-.+.....+.+++++.|+.+++..+...+.+
T Consensus 268 ~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya 347 (451)
T PF03023_consen 268 EGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYA 347 (451)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 6889999998773 67888999999999999999999999999999999
Q ss_pred ccchhhhhcc
Q 047089 173 QSLILTLFLS 182 (183)
Q Consensus 173 ~g~~~~~~~~ 182 (183)
.||+|.+++.
T Consensus 348 ~~~~~~~~~~ 357 (451)
T PF03023_consen 348 LGDTKTPVRI 357 (451)
T ss_pred ccCcHhHHHH
Confidence 9999999865
No 18
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.73 E-value=5.4e-16 Score=126.12 Aligned_cols=166 Identities=13% Similarity=0.040 Sum_probs=154.5
Q ss_pred hhhhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 047089 18 VTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYG 97 (183)
Q Consensus 18 ~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g 97 (183)
+++..+.+..|++.+...|..++..+.++...+|+.+.+.+.+.+++.+.+++++++++.-.+..++++.+.|..|++..
T Consensus 222 p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~ 301 (518)
T COG0728 222 PRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301 (518)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 44444557999999999999999999999999999999999999999999999999999878999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc----CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 047089 98 AEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLL----HQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQA 172 (183)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~----~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 172 (183)
++|.++.++..+++++++.++++|.++ +.++++|+.+.+ .++++-...+...+..+..+.+++.+..++...+++
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA 381 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA 381 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 688999999876 356777888999999999999999999999999999
Q ss_pred ccchhhhhccC
Q 047089 173 QSLILTLFLSS 183 (183)
Q Consensus 173 ~g~~~~~~~~s 183 (183)
.+|+|.|++++
T Consensus 382 r~d~ktP~~i~ 392 (518)
T COG0728 382 REDTKTPMKIA 392 (518)
T ss_pred ccCCCcChHHH
Confidence 99999999753
No 19
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.72 E-value=5.6e-16 Score=126.91 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc----C---hHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHH
Q 047089 22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL----G---KLSLASI----TIATSLTNVTGFTPLFGFACALET 90 (183)
Q Consensus 22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~----g---~~~~aa~----~~~~~~~~~~~~~~~~gl~~~~~~ 90 (183)
.+++.+|++++.++|.+++++...+...+|+.++++. | .++.+.+ +++.++.+++ ..+..+++.+..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999875 2 1222333 3455677765 5678899999999
Q ss_pred HHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 047089 91 LCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHN 169 (183)
Q Consensus 91 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 169 (183)
.+||++|+||+++.++..++++.++..+++|.++ +..++++++.++..++ .+..++++.++..++..+.....++
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 6789999999887554 3678999999999999999999999
Q ss_pred Hhhccchhhhhcc
Q 047089 170 LQAQSLILTLFLS 182 (183)
Q Consensus 170 l~~~g~~~~~~~~ 182 (183)
+++.||+|.+++.
T Consensus 374 l~~~g~~~~~~~~ 386 (488)
T TIGR02900 374 LQGLGKQKVALRN 386 (488)
T ss_pred HHhcCcchHHHHH
Confidence 9999999998764
No 20
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.69 E-value=9.2e-16 Score=124.79 Aligned_cols=159 Identities=44% Similarity=0.665 Sum_probs=153.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhh
Q 047089 24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQK 103 (183)
Q Consensus 24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 103 (183)
.++.|++++++.|.++..+.......++..++||.|+.++|+.+++.+..+...+.+..|+..+..++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 57889999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089 104 IGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS 182 (183)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 182 (183)
...+.+++..+-...++|.++++.+.++++..+++|+++...+..|.++..+..+.+........++|+.+++.+..++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988776653
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=99.64 E-value=4.6e-14 Score=113.76 Aligned_cols=156 Identities=11% Similarity=0.014 Sum_probs=131.9
Q ss_pred hhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCc
Q 047089 20 RRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVG-HLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGA 98 (183)
Q Consensus 20 ~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~-~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~ 98 (183)
++.+++.+|++++.+.|..++++...+...+|+.+++ ++|++++++|+.+.++.+.+...+..+++++..|.++++
T Consensus 207 ~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~--- 283 (416)
T PRK15099 207 PSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL--- 283 (416)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3456788999999999999999999999999999997 779999999999999977444678999999999999995
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchh
Q 047089 99 EQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLIL 177 (183)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 177 (183)
+|++|.++..++.......++++.++ +..++++++.++.+|+- +.+.+++++.+++.++...+......+-..++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~--~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~ 361 (416)
T PRK15099 284 TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKF--TAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLR 361 (416)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999988 57899999999877751 2467788888888888777777666666666665
Q ss_pred hhh
Q 047089 178 TLF 180 (183)
Q Consensus 178 ~~~ 180 (183)
..+
T Consensus 362 ~~~ 364 (416)
T PRK15099 362 FYI 364 (416)
T ss_pred HHH
Confidence 443
No 22
>PRK10459 colanic acid exporter; Provisional
Probab=99.61 E-value=5.9e-14 Score=115.32 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089 22 AFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ 100 (183)
Q Consensus 22 ~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 100 (183)
.+++.+|++++.+.|.+.+++...+...+|+.++|++ |+++++.|+.+.++.+.+...+...++....|..|+. ++|
T Consensus 201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~ 278 (492)
T PRK10459 201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD 278 (492)
T ss_pred ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence 3457789999999999999999999999999999998 9999999999999998765555666788899999986 678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhh
Q 047089 101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 179 (183)
.++.++.+++...+...+++|.++ +..++++++.++.+++ ...+...++++++..++..+.......+++.||+|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 899999999999999999999998 6778999998776654 3568899999999999999999999999999999987
Q ss_pred hc
Q 047089 180 FL 181 (183)
Q Consensus 180 ~~ 181 (183)
+.
T Consensus 357 ~~ 358 (492)
T PRK10459 357 FK 358 (492)
T ss_pred HH
Confidence 64
No 23
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=112.82 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY 101 (183)
Q Consensus 23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (183)
.++.++++++.++|..++.....+...+|+.+++++ |+++++.|+.+.++... ...+..+++.+..|..++.+.++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 368999999999999999999999999999999998 99999999988888885 4878999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
++.++..+++..+...+++|..+ +..+++++..++.+++.. .+...+.++++..++..+.......+++.|+++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999999 688999999877666532 388999999999999999999999999999999876
Q ss_pred cc
Q 047089 181 LS 182 (183)
Q Consensus 181 ~~ 182 (183)
+.
T Consensus 365 ~~ 366 (480)
T COG2244 365 LI 366 (480)
T ss_pred HH
Confidence 54
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.56 E-value=4.1e-13 Score=110.07 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=129.5
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHH
Q 047089 31 NFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTY 109 (183)
Q Consensus 31 ~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 109 (183)
+|-+.|.++++++..+..++|..+++|+ |+++.++++.+.++.++.......|++++....+||+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4668999999999999999999999996 999999999999998865333446999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 110 SAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 110 ~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
.++.+.++.+++.++ +..+.+++...+..|++. ..++++.++..++..+.....+++|+.+|.|..+.
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAY 150 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHH
Confidence 999999999999888 567888888877666653 35788899999999999999999999999998765
No 25
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.51 E-value=2.3e-12 Score=106.02 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=121.9
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCccchhhHHH
Q 047089 30 VNFLAAPLARVTVFQLLLPTVSTMMVGH-LGKLSL-ASITIATSLTNVTGFTPL-FGFACALETLCGQAYGAEQYQKIGT 106 (183)
Q Consensus 30 i~~~~~p~~l~~~~~~~~~~~d~~~~~~-~g~~~~-aa~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 106 (183)
++|-+.-.++++++..+..++|..++++ +|+++. ++++++.++.++...... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4677788899999999999999999999 599999 799999999875423223 357777777666554333 67888
Q ss_pred HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089 107 YTYSAMFFCIAICLPI-SV-LWIFMDKILMLL--HQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS 182 (183)
Q Consensus 107 ~~~~~~~~~~~~~l~~-~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 182 (183)
...+++.....+.... ++ .+.+++++..++ +.|++..+.+..|+++..++.++..+..+..+++|+.||.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 8888777776555544 44 467889998888 5677888999999999999999999999999999999999988764
No 26
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.41 E-value=1.8e-11 Score=99.85 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=148.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089 24 VQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLG--KLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY 101 (183)
Q Consensus 24 ~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g--~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (183)
.+.+++++++++|..++.+.+++...+-....|.++ ..++++.++........ +++..|++.+.++.+++.+|++|.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence 789999999999999999999999999999999996 46889999999998864 889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 102 QKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
+++|.....+...++.++...+. ++...+.+...|+.|+|+.+...+...+++...+..+.+.++++..+|.|+.+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 99999999999999999999988 68899999999999999999999999999999999999999999999999988765
Q ss_pred cc
Q 047089 181 LS 182 (183)
Q Consensus 181 ~~ 182 (183)
++
T Consensus 402 ~v 403 (473)
T KOG1347|consen 402 VI 403 (473)
T ss_pred EE
Confidence 54
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=99.19 E-value=8.8e-10 Score=88.94 Aligned_cols=146 Identities=12% Similarity=0.015 Sum_probs=120.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHH
Q 047089 30 VNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYT 108 (183)
Q Consensus 30 i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 108 (183)
+.|-+.....++.+..+..++-..++.++ |+++.+..+...++..+.......|++++....++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 34555666777777887888888888887 9999999999998888664545888888889999988 68899999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 109 YSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 109 ~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
+.++.+++..++..++ ++.+.+++...+..+++. ..++.+..+..++..+.....+.+|+.||++.++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~ 150 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNAL 150 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 577889999888777652 35666666667777888999999999999998775
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.87 E-value=2.1e-07 Score=76.08 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=107.8
Q ss_pred ccChH-HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 047089 57 HLGKL-SLASITIATSLTNVTGFTPL-FGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV-LWIFMDKIL 133 (183)
Q Consensus 57 ~~g~~-~~aa~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~ 133 (183)
.+|.+ ..++|.++.++-+++...+. .++.++..|..++.. ++|.++.++..+..+.+...+.+.+++ .+++++++.
T Consensus 4 ~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv 82 (451)
T PF03023_consen 4 FFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIV 82 (451)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34644 56799999999997633343 468999999999999 899999999999999999999999888 588999999
Q ss_pred HHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhc
Q 047089 134 MLL--HQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFL 181 (183)
Q Consensus 134 ~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 181 (183)
.++ +.|++..+.+.+++++..+..++.++..+..+++|+.+|...+..
T Consensus 83 ~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~ 132 (451)
T PF03023_consen 83 RLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPAL 132 (451)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 988 678899999999999999999999999999999999999887654
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.71 E-value=3.8e-06 Score=69.19 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=122.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChH-HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCccchhh
Q 047089 27 LKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKL-SLASITIATSLTNVTGFTPL-FGFACALETLCGQAYGAEQYQK 103 (183)
Q Consensus 27 ~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~-~~aa~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~ 103 (183)
-..++|-+.-....++++.+..++-..+++.+ |.+ ..+|+.+++++-+++-..+. .+++++..|...++..+++.++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 34566677777888888999999988888776 885 56799999999997633333 2478999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc-CC--ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhh
Q 047089 104 IGTYTYSAMFFCIAICLPISVL-WIFMDKILMLL-HQ--NPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179 (183)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 179 (183)
.++..+....+...+.+.++++ .++++++.+.. +. |++....+....++..|..++.++.....+++++.++...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 8888888887777777777775 67888888444 32 34444468888899999999999999999999999998776
Q ss_pred hc
Q 047089 180 FL 181 (183)
Q Consensus 180 ~~ 181 (183)
.+
T Consensus 166 a~ 167 (518)
T COG0728 166 AF 167 (518)
T ss_pred hh
Confidence 54
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.22 E-value=1.8e-05 Score=59.65 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 047089 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAY 96 (183)
Q Consensus 23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~ 96 (183)
+++..|++++.+.|..++.+...+....|..+++++ |+++++.|+.+.++...+ ..+...+.+...|..+|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999999999998 999999999999999975 7788999999999999863
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=98.13 E-value=0.00019 Score=59.29 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=99.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHH
Q 047089 28 KKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGT 106 (183)
Q Consensus 28 ~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~ 106 (183)
++..+-+....+++....+..++-...++++ |+++.+.++.+..+..+.......|++.+.. |. +| +-++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~--~~~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QD--ISHL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---cc--CCHH
Confidence 4566777778888888999999988888887 9999999999999988654445567777552 21 11 1234
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 107 YTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
..+....+....++..+++ +.+.+++...++ +++ ....+.+..+..++..+.....+.+|+.++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a 145 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLA 145 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHH
Confidence 4556667777777776664 556666665544 444 23567777888888888888899999988877543
No 32
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.10 E-value=0.00077 Score=50.66 Aligned_cols=140 Identities=11% Similarity=0.089 Sum_probs=90.3
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHH
Q 047089 31 NFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTY 109 (183)
Q Consensus 31 ~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 109 (183)
+|-+.-..++++...+..++-..++.++ |+++.+.++...++.++.......|++++.....++...+ .++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3455667778888888888888888887 9999999999999998764445788888888888877543 344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 110 SAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
.......+.++........ ...+..++. ...+........++.........++++.++.+...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI----ASFFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIA 142 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333332222 123333332 22233333333367888888999999988777543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.01 E-value=0.00021 Score=58.81 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=109.9
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089 26 ELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI 104 (183)
Q Consensus 26 ~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 104 (183)
..++..|-+.-...++++..+..++-...+++. |+++.+.++.+.++..++......|+..+..-.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 345666777777888888888888888888887 9999999999999999875555689999999999998877776666
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 105 GTY-TYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 105 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
+.. ...+.......+++.........+. ++ .....+.+.....+.........+++|+.++.+...
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLA 150 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 666 6666655555555555543333332 22 344567788999999999999999999999887654
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.97 E-value=0.00023 Score=59.60 Aligned_cols=152 Identities=9% Similarity=-0.033 Sum_probs=128.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHhc--c-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch--
Q 047089 27 LKKVNFLAAPLARVTVFQLLLPTVSTMMVGH--L-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY-- 101 (183)
Q Consensus 27 ~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~--~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 101 (183)
-++.+++......+.+.-.+..--|..++.. + ..++-+.|++++++-++.+-.+...+-.+.-...+|...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 5788889999999999999999999999988 6 7889999999999999888888888999999999998876543
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q 047089 102 -------QKIGTYTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQ 173 (183)
Q Consensus 102 -------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 173 (183)
++..+.....+++...+++....+ ....+.++.+++++.-....+...++++|+.+|+.++|.+.-++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 446677778888888888877774 667888888886665555567889999999999999999999999998
Q ss_pred cchhh
Q 047089 174 SLILT 178 (183)
Q Consensus 174 g~~~~ 178 (183)
.+++.
T Consensus 412 a~~~~ 416 (549)
T PF04506_consen 412 ASESQ 416 (549)
T ss_pred CCHHH
Confidence 76653
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.84 E-value=0.0041 Score=48.15 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=104.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc--Ch-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccch
Q 047089 25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL--GK-LSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQY 101 (183)
Q Consensus 25 ~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~--g~-~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (183)
..++++.+.-+|..++.....+...+.+.-+++- .+ +.+|+|+++..+.-++ ..+...+-+....++-+ +.
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHhcc-----hh
Confidence 5788999999999999999999999999999874 33 3489999999998865 66777777766665543 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccch
Q 047089 102 QKIGTYTYSAMFFCIAICLPISVL-WI-FMDKIL-MLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLI 176 (183)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 176 (183)
+|.+-.... ...+........++ +- +..+++ ..++.++++.+.+...+.++....++.++.....|++--..++
T Consensus 82 srr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 82 SRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 222222222 22222222222332 22 556666 4779999999999999999999999999999999988744443
No 36
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.78 E-value=0.0043 Score=46.18 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 047089 47 LPTVSTMMVGHL-GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVL 125 (183)
Q Consensus 47 ~~~~d~~~~~~~-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (183)
.+++-..+++|. |+++.+.++....+..+.......|+...... ..++|+++.++..+.......+.++...++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776 99999999999999886533335555555433 234666677777777766655555544442
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhh
Q 047089 126 WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLF 180 (183)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 180 (183)
. ..+...+ .+++ ...++....+..++........+.+++.+|.+...
T Consensus 78 ~---~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (251)
T PF13440_consen 78 A---ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYA 124 (251)
T ss_pred H---HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 1 1111233 3332 34466677788888999999999999999987654
No 37
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.38 E-value=0.002 Score=47.96 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=60.9
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 047089 29 KVNFLAAPLARVTVFQLLLPTVSTMMVGH-LGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQA 95 (183)
Q Consensus 29 ~i~~~~~p~~l~~~~~~~~~~~d~~~~~~-~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~ 95 (183)
+.++.+.|..++++.......+|..+++. +|+++++.|+.+.++...+...+..++++...|.+||.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999 69999999999999999763278999999999998873
No 38
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.021 Score=46.36 Aligned_cols=151 Identities=9% Similarity=-0.043 Sum_probs=111.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchhhH
Q 047089 28 KKVNFLAAPLARVTVFQLLLPTVSTMMVGHL---GKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQKI 104 (183)
Q Consensus 28 ~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~---g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 104 (183)
++..+...-..-+.+.-.+..--|.+++.-. +-++-|.|.+++++-++.+-.+.-.+--..-...+|-...++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 4445555555666666677777788887643 4456778888888888777777777888888888888877766655
Q ss_pred HH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhh
Q 047089 105 GT---YTYSAMFFCIAICLPISVL-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILT 178 (183)
Q Consensus 105 ~~---~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 178 (183)
++ +....+.+...+++.++++ ...++.++.++++++-....+...++++|..+|+.++|.+.-++..+.++.+.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 55 4556666666667666664 55778888888877666666778999999999999999999999999876543
No 39
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=67.09 E-value=27 Score=21.51 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 047089 84 FACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV 124 (183)
Q Consensus 84 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (183)
++..-+..+-+.+.+||++++++.-+++-.++.+-.+...+
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~ 76 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGIV 76 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44445556778888999999999999988887655444333
No 40
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=65.33 E-value=50 Score=24.67 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=32.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH---------HHHHHHHHHHHHHhHHHHHH
Q 047089 100 QYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQ---------ISVEARNYAIWLIPALFGYA 161 (183)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~~ 161 (183)
+++.....+..++..-+++-+.+++++.+..++..+++.|.- ..+-.-.|++++++++|...
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 345555555555554444444445556666777776653311 11224456666666666554
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=59.08 E-value=38 Score=26.88 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhc-c-Ch----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 047089 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGH-L-GK----LSLASITIATSLTNVTGFTPLFGFACALETLCGQAY 96 (183)
Q Consensus 23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~-~-g~----~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~ 96 (183)
+....++.++..+|.++.+....+...+-+.++++ + |. +++|..+..+++--.+ +.... =.-+..|..-+.-
T Consensus 230 ~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~-y~w~~-~~r~~~paf~~~~ 307 (345)
T PF07260_consen 230 DSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMP-YGWLT-ELRAVYPAFDKNN 307 (345)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCc-chhHH-hHHhhCchhhccC
Confidence 44689999999999999999999999999999999 4 33 4556555555554433 32111 1122233322221
Q ss_pred Cccchhh-----HHHHHHHHHHHHHHHHHHHHH
Q 047089 97 GAEQYQK-----IGTYTYSAMFFCIAICLPISV 124 (183)
Q Consensus 97 g~~~~~~-----~~~~~~~~~~~~~~~~l~~~~ 124 (183)
-.++..+ .+..+++....++++++.++.
T Consensus 308 ~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f 340 (345)
T PF07260_consen 308 PQNKLRNCGNPVTQSHISKFVVLCLLLSLALCF 340 (345)
T ss_pred cccccccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 233666677777777776665
No 42
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=48.94 E-value=91 Score=21.82 Aligned_cols=59 Identities=7% Similarity=0.224 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHHHHhCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 047089 81 LFGFACALETLCGQAYGAEQYQKIGTY-TYSAMFFCIAICLPISVLWIFMDKILMLLHQNP 140 (183)
Q Consensus 81 ~~gl~~~~~~~~s~~~g~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~ 140 (183)
...+++.......+...+.-.+ .++. -++-+..+++.++.+.++...-+++-+.|+..+
T Consensus 97 ~lv~~q~~~~~~~r~~~~~~~~-~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~ 156 (182)
T PF00689_consen 97 ALVLSQLFNAFNCRSRRRSVFR-FRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAP 156 (182)
T ss_dssp HHHHHHHHHHHHTSSSSSTCTT--STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST---
T ss_pred HHHHHHHhhhccccccccccee-cccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccC
Confidence 3344555555555553221111 1112 234455555555555554444456677776553
No 43
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=43.15 E-value=1.6e+02 Score=22.92 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHH
Q 047089 25 QELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHL------GKLSLASITIATSLTNVTGFTPLFGFACALET----LCGQ 94 (183)
Q Consensus 25 ~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~------g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~----~~s~ 94 (183)
+.+|--+-++.|.+...+-+.++.......++.+ |.+.+.+.+- .. +...+-.|++..... .++|
T Consensus 200 ~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~----ld-ig~g~~aGlaIVilAIiLDRitq 274 (290)
T COG4176 200 KLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGIQR----LD-IGLGFEAGLAIVILAIILDRLTQ 274 (290)
T ss_pred HHHHhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH----hh-hHHHHhhhHHHHHHHHHHHHHHH
Confidence 3455555566777666665555555544444333 4444433332 12 123344455544444 3788
Q ss_pred HhCccchhhHHH
Q 047089 95 AYGAEQYQKIGT 106 (183)
Q Consensus 95 ~~g~~~~~~~~~ 106 (183)
.+|.+...+.++
T Consensus 275 ~~~~~~~~~~~~ 286 (290)
T COG4176 275 AFGRKAKSRHRR 286 (290)
T ss_pred Hhcccccccccc
Confidence 888876555443
No 44
>COG3924 Predicted membrane protein [Function unknown]
Probab=40.89 E-value=81 Score=18.98 Aligned_cols=68 Identities=7% Similarity=-0.207 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047089 100 QYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCH 168 (183)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 168 (183)
++.++.+-.+-++.+++++...-++....++.--...+.+ .=.+.+-.|+.++.....-..+.+++..
T Consensus 4 Rf~QA~KEA~WAlgLtllYl~gW~v~AYlp~~t~G~~gfP-~WFE~aCi~lPllFi~l~~~mvkfif~D 71 (80)
T COG3924 4 RFVQAHKEARWALGLTLLYLAGWLVAAYLPGNTPGFTGFP-LWFEMACILLPLLFIVLCWAMVKFIFRD 71 (80)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455556666677777666665555444444444444444 4467788888887777766666665543
No 45
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=38.19 E-value=1.6e+02 Score=21.54 Aligned_cols=59 Identities=15% Similarity=0.003 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 047089 86 CALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEAR 147 (183)
Q Consensus 86 ~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 147 (183)
.+..|.....-+..+.++-++..++....+..+.+ +..++.+.+++.|+-+-+..+.+.
T Consensus 21 ig~ipvfl~lt~~~~~~~r~~ia~~~~l~a~~ill---~f~~~G~~iL~~fgIsl~afrIaG 79 (201)
T TIGR00427 21 IGNIPIFISLTEYYTAAERNKIAKKANISSFIILL---IFLVFGDTILKLFGISIDAFRIAG 79 (201)
T ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34455666666666777777777766655554443 345568889999988766544433
No 46
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=38.19 E-value=47 Score=18.92 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhHhhHHHHHHHH
Q 047089 21 RAFVQELKKVNFLAAPLARVTVFQ 44 (183)
Q Consensus 21 ~~~~~~~~~i~~~~~p~~l~~~~~ 44 (183)
....+.-.++....+|....-++.
T Consensus 21 ~~~~e~~~kv~tVVlP~l~~~~~~ 44 (56)
T PF15012_consen 21 KEMQEAQQKVFTVVLPTLAAVFLF 44 (56)
T ss_pred HHHHHHHHhheeEehhHHHHHHHH
Confidence 344466777888889987654443
No 47
>PF08837 DUF1810: Protein of unknown function (DUF1810); InterPro: IPR014937 This is a family of uncharacterised proteins. The structure of one of the members in this family has been solved and it adopts a mainly alpha helical structure. ; PDB: 2JEK_A.
Probab=34.85 E-value=1.5e+02 Score=20.36 Aligned_cols=88 Identities=8% Similarity=-0.050 Sum_probs=49.3
Q ss_pred HHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 047089 91 LCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNL 170 (183)
Q Consensus 91 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 170 (183)
-.++.||-++.++++.|..+-+.-.=+.-..-.++-.-....-.+||..++. +.-..........---..+..++..++
T Consensus 48 ~~a~~Y~I~sl~EA~AYL~HpvLG~RL~e~~~~ll~~~~~s~~~IfG~~D~~-Kl~SsmTLF~~~a~~~~~F~~~L~~~f 126 (139)
T PF08837_consen 48 PTARRYAIASLDEARAYLAHPVLGPRLRECTEALLALEGRSAEEIFGSPDAL-KLRSSMTLFAAAAPDEPVFRQVLDKYF 126 (139)
T ss_dssp HHHHHTSB-SHHHHHHHHHSTTHHHHHHHHHHHHHH--S--HHHHS-TTHHH-HHHHHHHHHHHH-S--HHHHHHHHHHS
T ss_pred hHHHHhccCCHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCCHHHHCCChhHH-HHHhHHHHHHHhcCCcchHHHHHHHHc
Confidence 4688999999999999999887666555555444444456777788865543 322222222222223455667888888
Q ss_pred hhccchhhh
Q 047089 171 QAQSLILTL 179 (183)
Q Consensus 171 ~~~g~~~~~ 179 (183)
.|..|.+..
T Consensus 127 ~G~~D~~Tl 135 (139)
T PF08837_consen 127 DGEPDERTL 135 (139)
T ss_dssp TT---HHHH
T ss_pred CCCCCHHHH
Confidence 888777653
No 48
>PF07782 DC_STAMP: DC-STAMP-like protein; InterPro: IPR012858 This group of sequences is similar to a region of the dendritic cell-specific transmembrane protein (DC-STAMP, Q9H295 from SWISSPROT). This is thought to be a novel receptor protein that shares no identity with other multimembrane-spanning proteins []. It is thought to have seven putative transmembrane regions [], two of which are found in the region featured in this family. DC-STAMP is also described as having potential N-linked glycosylation sites and a potential phosphorylation site for PKC [], but these are not conserved. ; GO: 0016021 integral to membrane
Probab=33.46 E-value=78 Score=22.81 Aligned_cols=40 Identities=13% Similarity=-0.038 Sum_probs=32.2
Q ss_pred hhhhhhhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 047089 16 WAVTRRAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMV 55 (183)
Q Consensus 16 ~~~~~~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~ 55 (183)
...+.+..+++.+++++-.++.++..+...+...+|-.+-
T Consensus 38 ~~~s~~lt~~E~~~~~~~~~~l~~~~~~~~~~~~~D~~ly 77 (191)
T PF07782_consen 38 DPTSLRLTRKERKRLLRSLLFLLLHLLQWLVIIALDYLLY 77 (191)
T ss_pred ccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555678889999999999999999999988888774
No 49
>PRK11111 hypothetical protein; Provisional
Probab=33.25 E-value=2e+02 Score=21.28 Aligned_cols=56 Identities=14% Similarity=-0.027 Sum_probs=33.0
Q ss_pred HHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 047089 89 ETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEAR 147 (183)
Q Consensus 89 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 147 (183)
.|..-..-...+.++-|+..+++...+.++.+ +..++.++++++|+-+-+..+.+.
T Consensus 27 ipiflslt~~~s~~~r~~ia~~a~l~a~~ill---~f~~~G~~iL~~fGIsl~afrIaG 82 (214)
T PRK11111 27 LPVFISMTSHQTAAERNKTNLTANLSVAIILL---ISLFLGDFILNLFGISIDSFRIAG 82 (214)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33444444445556666666665555443333 346678999999988866544443
No 50
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=30.67 E-value=2.1e+02 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhCcc
Q 047089 77 GFTPLFGFACALETLCGQAYGAE 99 (183)
Q Consensus 77 ~~~~~~gl~~~~~~~~s~~~g~~ 99 (183)
...+..+++-++.+++++.+|++
T Consensus 118 ~~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 118 AGILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred HHHHHHHHhhHHHHHhCcccCcc
Confidence 35578889999999999999985
No 51
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.93 E-value=1.5e+02 Score=18.71 Aligned_cols=51 Identities=8% Similarity=0.251 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 047089 101 YQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAI 151 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 151 (183)
.+.+-+..+.+++.++.++.|..+....-.-+.++|..--++.|.+..|+.
T Consensus 3 ~~~~l~i~~~ai~~~L~l~~P~ll~alvvGLvIsifQA~TQIqEqTLsFiP 53 (89)
T COG1987 3 EEDVLDIGQEAIWLVLMLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIP 53 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456678889999999999999888666667777788766677777777765
No 52
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=28.94 E-value=1.5e+02 Score=18.58 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047089 100 QYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLH 137 (183)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~ 137 (183)
|++.+-++.++++++.++.++|-.+....-.-+++++.
T Consensus 2 ~~~~i~~~~~qaL~liLilSlPpvivAsvvGllVslvQ 39 (89)
T COG4794 2 DMDDIVFLTSQALWLILILSLPPVIVASVVGLLVSLVQ 39 (89)
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56778899999999999999998876555566666664
No 53
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=28.53 E-value=3.3e+02 Score=22.26 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHHHhHHHHHHHHHHHH---hC--ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 047089 76 TGFTPLFGFACALETLCGQA---YG--AEQYQKIGTYTYSAMFFCIAICLPISV 124 (183)
Q Consensus 76 ~~~~~~~gl~~~~~~~~s~~---~g--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (183)
+.....++......+++..+ +| +++.++.++....+..+.+++-+....
T Consensus 193 pv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~ 246 (397)
T TIGR00814 193 PVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVF 246 (397)
T ss_pred HHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666777776333 55 333677777777777666665555554
No 54
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=27.00 E-value=2.1e+02 Score=19.52 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH
Q 047089 81 LFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGY 160 (183)
Q Consensus 81 ~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 160 (183)
..++..-+.=+++|.+|. +++++....++...++..+...+...++++- . .+++....-....++..-+...+
T Consensus 6 ~fp~~fl~~Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~-~---~~~~~~~vf~~~~ri~~aS~~a~ 78 (145)
T PF02592_consen 6 IFPLTFLITDIISEVYGK---KAARKAIWIGFLANLLFSLLIWIVILLPPAP-F---WQEAFESVFGPTPRIALASLIAF 78 (145)
T ss_pred hHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-h---hHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555666788888874 4455555555555555544433322222111 1 12333333334455555555555
Q ss_pred HHHHHHHH
Q 047089 161 AILRSLCH 168 (183)
Q Consensus 161 ~~~~~~~~ 168 (183)
.+....+.
T Consensus 79 lisq~~d~ 86 (145)
T PF02592_consen 79 LISQLLDV 86 (145)
T ss_pred HHHHHHHH
Confidence 55444444
No 55
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=26.49 E-value=3.9e+02 Score=22.40 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH---hC---ccc--hhhHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHcCCC
Q 047089 71 SLTNVTGFTPLFGFACALETLCGQA---YG---AEQ--YQKIGTYTYSAMFFCIAICLPISV-LW--IFMDKILMLLHQN 139 (183)
Q Consensus 71 ~~~~~~~~~~~~gl~~~~~~~~s~~---~g---~~~--~~~~~~~~~~~~~~~~~~~l~~~~-~~--~~~~~i~~~~~~~ 139 (183)
-+..++...+.++......+++..+ || .+| .+++++....+..+-+++-+.... +. +-++.+.....++
T Consensus 211 l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn 290 (443)
T PRK13629 211 VWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQN 290 (443)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 4445565667788888888887775 55 234 566666666655555555554444 32 2345555555443
Q ss_pred h
Q 047089 140 P 140 (183)
Q Consensus 140 ~ 140 (183)
.
T Consensus 291 ~ 291 (443)
T PRK13629 291 I 291 (443)
T ss_pred C
Confidence 3
No 56
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=26.37 E-value=4.2e+02 Score=22.84 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 047089 83 GFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV 124 (183)
Q Consensus 83 gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (183)
+.+.+.....-|...+++.+++.+.+....+..+-+-+|+++
T Consensus 138 AtGiAv~~AliRg~~~~~~~~iGNFwvDl~R~~l~vLLPlS~ 179 (552)
T PF03814_consen 138 ATGIAVAIALIRGFARKETKTIGNFWVDLVRSTLRVLLPLSF 179 (552)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 344444445666676777777888888888888888888776
No 57
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=25.15 E-value=83 Score=26.24 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHH
Q 047089 78 FTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICL 120 (183)
Q Consensus 78 ~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l 120 (183)
-.+..|++-.+..++++.+|+.+..+.++.+.-.+...+...+
T Consensus 415 GiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~Afivs~~i 457 (510)
T KOG2468|consen 415 GILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTLAFIVSSFI 457 (510)
T ss_pred hheeeccchHHHHHHhhhhcceecCCCcceeehhhHHHHHHHH
Confidence 4567899999999999999999998888877655544443333
No 58
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=23.34 E-value=3e+02 Score=20.08 Aligned_cols=58 Identities=12% Similarity=-0.064 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 047089 87 ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEAR 147 (183)
Q Consensus 87 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 147 (183)
+..|..-..-+..+.++-|+..++....+.++.+. ..++.+++++.|+-+-+..+.+.
T Consensus 19 g~ip~f~~lt~~~~~~~r~~ia~~a~~~a~~ill~---f~~~G~~iL~~fgIsl~af~IaG 76 (203)
T PF01914_consen 19 GNIPIFLSLTKGMSPKERRRIARRASIIAFIILLI---FAFFGQLILNFFGISLPAFRIAG 76 (203)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHH
Confidence 44455555555666677777777666655544333 45568999999988766544443
No 59
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=23.04 E-value=3.1e+02 Score=20.07 Aligned_cols=42 Identities=5% Similarity=0.113 Sum_probs=25.1
Q ss_pred HHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 047089 80 PLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISV 124 (183)
Q Consensus 80 ~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (183)
+..++..-+.=+++|.||+ +++|+....++...+...+...+
T Consensus 37 ~~yp~tfl~~Dii~E~yG~---~~A~~~V~~gf~~~i~~~~~~~~ 78 (202)
T TIGR00697 37 VYYPGTFLATDVLREIYGK---KDARKAIFVGFISALLFSVLTQL 78 (202)
T ss_pred HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666788999974 44555555555555554444443
No 60
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=23.04 E-value=1.7e+02 Score=17.21 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=8.2
Q ss_pred HHHHHHHHHhHhhHHHHH
Q 047089 24 VQELKKVNFLAAPLARVT 41 (183)
Q Consensus 24 ~~~~~~i~~~~~p~~l~~ 41 (183)
++.+|+-++.+.+..+-.
T Consensus 49 ~~~fk~nf~~~~~~~~~~ 66 (77)
T PF04854_consen 49 WRAFKQNFKQSLLLGLIL 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444454444444333
No 61
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=22.56 E-value=1.9e+02 Score=17.51 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=36.6
Q ss_pred HHHHHhccChH-HHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHhCccchhhHHHHHHHHH
Q 047089 51 STMMVGHLGKL-SLASITIATSL-----TNVTGFTPLFGFACALETLCGQAYGAEQYQKIGTYTYSAM 112 (183)
Q Consensus 51 d~~~~~~~g~~-~~aa~~~~~~~-----~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 112 (183)
-..+++.+||. +++...++.+. .-+.+......+.++.....++..+++=.++.-+...-.+
T Consensus 6 ~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~l 73 (78)
T PF01169_consen 6 LLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGAL 73 (78)
T ss_pred HHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 34566777655 55666665543 3333455666677777778888776655555554444333
No 62
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=21.26 E-value=2.2e+02 Score=17.70 Aligned_cols=56 Identities=18% Similarity=0.029 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047089 83 GFACALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQ 138 (183)
Q Consensus 83 gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 138 (183)
+...+..+......+..+..+....-..++.++.+++++...++..-+--.++++.
T Consensus 29 a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~~Rf~G~ 84 (86)
T PF10785_consen 29 AGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSSLRFMGF 84 (86)
T ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 44556666677777766665544333677777888887777765555555555543
No 63
>PRK15350 type III secretion system protein SsaS; Provisional
Probab=21.10 E-value=2.3e+02 Score=17.82 Aligned_cols=52 Identities=12% Similarity=0.277 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 047089 100 QYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAI 151 (183)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 151 (183)
+.+.+-+..+++++..+.++.|..+.-..-.-+++++..--++-|.+..+..
T Consensus 2 ~~~~v~~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQIQEqTLsFvP 53 (88)
T PRK15350 2 NDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMI 53 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999888666666777777555555555555544
No 64
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=20.64 E-value=2.3e+02 Score=17.77 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=37.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 047089 100 QYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAI 151 (183)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 151 (183)
+.+.+-+..+++++..+.++.|..+....-.-+++++..--++-|.+..+..
T Consensus 2 ~~~~~~~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~TQIqEqTLsFvP 53 (88)
T PRK06010 2 NEADALDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQIQEMTLTFVP 53 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3567778899999999999999888666666777777555555555555544
No 65
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=20.58 E-value=5.3e+02 Score=22.47 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Q 047089 125 LWIFMDKILMLLHQNPQISVEARNYAIWL-IPALFGYAILRSLCH 168 (183)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~-~~~~~~~~~~~~~~~ 168 (183)
++++..-+++.+...+|-...+...+.++ .+.+++.++.++..-
T Consensus 102 llVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRl 146 (654)
T KOG1419|consen 102 LLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRL 146 (654)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788889998888877788877777 556677777766543
No 66
>PRK10739 putative antibiotic transporter; Provisional
Probab=20.01 E-value=3.6e+02 Score=19.68 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 047089 87 ALETLCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEAR 147 (183)
Q Consensus 87 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 147 (183)
+..|..-..-...+.++-|+..++....+..+.+ +..++.+.+++.|+-+-+..+.+.
T Consensus 19 g~ipiflslt~~~~~~~r~~ia~~a~~~a~~ill---~f~~~G~~iL~~fGIsl~afrIAG 76 (197)
T PRK10739 19 GNLPIFMSVLKHLEPKRRRAIMIRELLIALLVML---VFLFAGEKILAFLNLRTETVSISG 76 (197)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444555555566777777777766666554443 345678999999998876555444
Done!