Query 047089
Match_columns 183
No_of_seqs 114 out of 1614
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:53:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 3.1E-22 1.1E-26 160.9 11.2 161 21-182 231-392 (460)
2 3mkt_A Multi antimicrobial ext 99.8 5.1E-21 1.8E-25 153.8 9.7 159 23-182 7-165 (460)
3 2jek_A RV1873; structural geno 30.5 1.2E+02 0.0041 20.1 5.6 88 91-179 52-139 (145)
4 1ug2_A 2610100B20RIK gene prod 13.8 2.4E+02 0.0081 17.1 3.5 26 89-114 58-83 (95)
5 4hkr_A Calcium release-activat 13.1 3.7E+02 0.013 18.9 14.4 81 60-141 57-145 (214)
6 2f93_B Sensory rhodopsin II tr 11.3 3.3E+02 0.011 17.4 5.1 70 103-173 12-83 (122)
7 2ket_A Cathelicidin-6; antimic 8.8 1.3E+02 0.0045 13.1 0.8 14 23-36 6-19 (27)
8 2gsl_A Hypothetical protein; a 6.8 5.4E+02 0.019 16.6 3.6 31 83-113 97-127 (137)
9 1nov_D Nodamura virus coat pro 6.2 3.5E+02 0.012 13.7 2.7 24 101-124 4-27 (44)
10 2wgm_A ATP synthase subunit C, 5.6 5.4E+02 0.018 15.2 4.0 58 80-137 26-89 (89)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.87 E-value=3.1e-22 Score=160.86 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=152.8
Q ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccc
Q 047089 21 RAFVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQ 100 (183)
Q Consensus 21 ~~~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 100 (183)
+.+++.+|++++.++|.+++++...+...+|+.+++++|++++++|+++.++.+++ ..+..+++++..|.+++++|+||
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567899999999999999999999999999999999999999999999999976 78999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhh
Q 047089 101 YQKIGTYTYSAMFFCIAICLPISV-LWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTL 179 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 179 (183)
+++.++..+++..++..++++.++ ++.+++++..++..|++..+.+..++++++++.++.+++.+..+++++.||+|.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 999999999999999999999998 6889999999999898999999999999999999999999999999999999998
Q ss_pred hcc
Q 047089 180 FLS 182 (183)
Q Consensus 180 ~~~ 182 (183)
++.
T Consensus 390 ~~~ 392 (460)
T 3mkt_A 390 FHR 392 (460)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=5.1e-21 Score=153.78 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCccchh
Q 047089 23 FVQELKKVNFLAAPLARVTVFQLLLPTVSTMMVGHLGKLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYGAEQYQ 102 (183)
Q Consensus 23 ~~~~~~~i~~~~~p~~l~~~~~~~~~~~d~~~~~~~g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (183)
.++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..+.++|++|++|++
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~ 85 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence 357899999999999999999999999999999999999999999999998854 7788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhhhhcc
Q 047089 103 KIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQSLILTLFLS 182 (183)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 182 (183)
+.++.+++++.+..+++++.++++.+.++++.+++.|++..+.+..|+++.+++.++..+.....+++|+.||++.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999998777778899999999999999999999999999999999999999999999999988753
No 3
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=30.54 E-value=1.2e+02 Score=20.08 Aligned_cols=88 Identities=8% Similarity=-0.077 Sum_probs=53.6
Q ss_pred HHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 047089 91 LCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNL 170 (183)
Q Consensus 91 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 170 (183)
-.++.||-++.++++.|..+-+.-.=+.-..-.++-.-....-.+||..++.-=.+..-| .....---..+..++..++
T Consensus 52 ~~A~~YgI~sl~EA~AYL~hpvLg~RL~e~~~~ll~~~~~sa~~IfG~~D~~KlrSsMTL-Fa~a~~~~~~F~~vL~~~f 130 (145)
T 2jek_A 52 PLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDLKLCSSMTL-FARATDANQDFVALLAKYY 130 (145)
T ss_dssp HHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTTHHHHHHHHHHH-HHHHCSCCHHHHHHHHHHS
T ss_pred hhhhHhccCCHHHHHHHHcChHHHHHHHHHHHHHHhccCCCHHHHcCChhHHHHHhHHHH-HHHcCCCchHHHHHHHHHc
Confidence 358999999999999999987765555444443333344566778887655322111111 1111100235677888888
Q ss_pred hhccchhhh
Q 047089 171 QAQSLILTL 179 (183)
Q Consensus 171 ~~~g~~~~~ 179 (183)
.|..|.+..
T Consensus 131 ~G~~D~~Tl 139 (145)
T 2jek_A 131 GGGEDRRTV 139 (145)
T ss_dssp TTCCCHHHH
T ss_pred CCCCCHHHH
Confidence 888877653
No 4
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=13.83 E-value=2.4e+02 Score=17.09 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=21.0
Q ss_pred HHHHHHHhCccchhhHHHHHHHHHHH
Q 047089 89 ETLCGQAYGAEQYQKIGTYTYSAMFF 114 (183)
Q Consensus 89 ~~~~s~~~g~~~~~~~~~~~~~~~~~ 114 (183)
...+++.+|.+...++++.++..+.+
T Consensus 58 Fa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 58 FSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34588999989999999988887664
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=13.10 E-value=3.7e+02 Score=18.94 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047089 60 KLSLASITIATSLTNVTGFTPLFGFACALETLCGQAYG--------AEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDK 131 (183)
Q Consensus 60 ~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (183)
+.-+.+|++...+.-. ...++.-+++=+.|-+-..-+ +.-.+|.+.++..+=.++..+++++.+.-+..--
T Consensus 57 ~~LLi~fav~Ttllv~-vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 57 PGMLIAFAICTTLLVA-VHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp --CHHHHHHHHHHHHH-HHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457788888887764 365666666555554443322 3346899999999999999999888875332233
Q ss_pred HHHHcCCChH
Q 047089 132 ILMLLHQNPQ 141 (183)
Q Consensus 132 i~~~~~~~~~ 141 (183)
.+.+...+..
T Consensus 136 WVKF~~~~~~ 145 (214)
T 4hkr_A 136 WVKFYDLSRR 145 (214)
T ss_dssp HHHHTTTCHH
T ss_pred eEEeecCCcH
Confidence 3444444443
No 6
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=11.35 E-value=3.3e+02 Score=17.36 Aligned_cols=70 Identities=7% Similarity=-0.030 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q 047089 103 KIGTYTYSAMFFCIAICLPISV-L-WIFMDKILMLLHQNPQISVEARNYAIWLIPALFGYAILRSLCHNLQAQ 173 (183)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 173 (183)
++++.+..-+..++...+.+++ + +++...+..--..+ |........-..+........+.....++.-|.
T Consensus 12 ~v~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~s-eA~A~~~~V~~~liil~~v~lv~LgvvG~~lGR 83 (122)
T 2f93_B 12 RVRHSYTGKMGAVFIFVGALTVLFGAIAYGEVTAAAATG-DAAAVQEAAVSAILGLIILLGINLGLVAATLGG 83 (122)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777766666666 4 45566666544333 333334444444444334444444444444333
No 7
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=8.83 E-value=1.3e+02 Score=13.08 Aligned_cols=14 Identities=29% Similarity=0.403 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhHhh
Q 047089 23 FVQELKKVNFLAAP 36 (183)
Q Consensus 23 ~~~~~~~i~~~~~p 36 (183)
.++.++++++--.|
T Consensus 6 frkkfkklfkklsp 19 (27)
T 2ket_A 6 FRKKFKKLFKKLSP 19 (27)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCc
Confidence 34455555554444
No 8
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=6.79 E-value=5.4e+02 Score=16.58 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Q 047089 83 GFACALETLCGQAYGAEQYQKIGTYTYSAMF 113 (183)
Q Consensus 83 gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~ 113 (183)
-.+++.-++++..|=.++.+++++.+...+.
T Consensus 97 ~~At~fEALiGaLYLd~~~erl~~ll~~~~~ 127 (137)
T 2gsl_A 97 KEATALEAIIGAMYLLKKEEEIKKIINIVIK 127 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3677777788888878888888888777653
No 9
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=6.19 E-value=3.5e+02 Score=13.67 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 047089 101 YQKIGTYTYSAMFFCIAICLPISV 124 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~ 124 (183)
.+|+++..+.++.....+-.|...
T Consensus 4 WErVk~ilks~l~~aS~iPGPVG~ 27 (44)
T 1nov_D 4 WERVRSILKSGLNFASTIPGPVGV 27 (44)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhH
Confidence 578888888887776666555554
No 10
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=5.64 E-value=5.4e+02 Score=15.17 Aligned_cols=58 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcC
Q 047089 80 PLFGFACALETLCGQAYGAEQYQKIGTYTYSAMFF------CIAICLPISVLWIFMDKILMLLH 137 (183)
Q Consensus 80 ~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~i~~~~~ 137 (183)
+..|++++...--+-.--++|++...+...+.+.. ..++++..++++.+..|+...++
T Consensus 26 iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~~~~~~ 89 (89)
T 2wgm_A 26 IGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGLLG 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!