Query 047089
Match_columns 183
No_of_seqs 114 out of 1614
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 12:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jeka1 a.255.1.1 (A:6-145) Hy 15.0 94 0.0068 18.9 3.6 87 91-179 47-134 (140)
2 d2csba3 a.60.2.4 (A:410-464) T 10.1 65 0.0047 15.3 1.4 20 129-148 15-34 (55)
3 d2o3fa1 a.4.1.20 (A:1-83) Puta 6.7 1.9E+02 0.014 15.3 2.7 32 81-112 45-76 (83)
4 d2hyda2 f.37.1.1 (A:1-323) Put 5.7 3.6E+02 0.026 17.0 8.7 17 30-46 241-257 (323)
5 d1oeda_ f.36.1.1 (A:) Acetylch 5.4 3.1E+02 0.023 17.1 3.8 31 104-134 192-222 (227)
6 d1fs1b1 a.157.1.1 (B:86-140) C 5.1 2.2E+02 0.016 13.8 2.3 21 88-108 34-54 (55)
7 d1u61a_ a.149.1.1 (A:) Hypothe 4.9 3.3E+02 0.024 15.6 3.6 29 84-112 94-122 (127)
8 d1lghb_ f.3.1.1 (B:) Light-har 4.7 2.2E+02 0.016 13.3 1.7 25 100-124 10-34 (43)
9 d1x41a1 a.4.1.1 (A:8-54) Trans 4.2 2.3E+02 0.017 13.0 2.4 19 91-109 26-44 (47)
10 d1b74a1 c.78.2.1 (A:1-105) Glu 3.8 3.1E+02 0.023 15.3 2.4 19 96-114 39-57 (105)
No 1
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.99 E-value=94 Score=18.89 Aligned_cols=87 Identities=9% Similarity=-0.067 Sum_probs=52.1
Q ss_pred HHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 047089 91 LCGQAYGAEQYQKIGTYTYSAMFFCIAICLPISVLWIFMDKILMLLHQNPQISVEARNYAIW-LIPALFGYAILRSLCHN 169 (183)
Q Consensus 91 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i-~~~~~~~~~~~~~~~~~ 169 (183)
-.++.||-++.++++.|..+-+.-.=+.-..-.++-.-......+|+.+++.--.+..-|.- .... -..+..++..+
T Consensus 47 ~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~~~ll~~~~~s~~~IfG~~D~lKlrSsmTLF~~a~~~--~~~F~~~L~~~ 124 (140)
T d2jeka1 47 PLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDLKLCSSMTLFARATDA--NQDFVALLAKY 124 (140)
T ss_dssp HHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTTHHHHHHHHHHHHHHHCSC--CHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHhChHhHHHHHHHHHHHHHccCCCHHHHCCChhHHHHHhHHHHHHHhCCC--chHHHHHHHHH
Confidence 47899999999999999998765544444333333344455667777765432222222221 1111 12456677788
Q ss_pred Hhhccchhhh
Q 047089 170 LQAQSLILTL 179 (183)
Q Consensus 170 l~~~g~~~~~ 179 (183)
+.|..|++..
T Consensus 125 f~G~~d~~Tl 134 (140)
T d2jeka1 125 YGGGEDRRTV 134 (140)
T ss_dssp STTCCCHHHH
T ss_pred hCCCCCHHHH
Confidence 8888776653
No 2
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=10.07 E-value=65 Score=15.28 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 047089 129 MDKILMLLHQNPQISVEARN 148 (183)
Q Consensus 129 ~~~i~~~~~~~~~~~~~~~~ 148 (183)
++-+++.|+.++.+.+.+..
T Consensus 15 aerllrafgnpervkqlare 34 (55)
T d2csba3 15 AERLLRAFGNPERVKQLARE 34 (55)
T ss_dssp HHHHHHHHSSHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 34566667766666555543
No 3
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=6.74 E-value=1.9e+02 Score=15.32 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHHHhCccchhhHHHHHHHHH
Q 047089 81 LFGFACALETLCGQAYGAEQYQKIGTYTYSAM 112 (183)
Q Consensus 81 ~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 112 (183)
-.+++.+......+.+|=+++.+.+..+...+
T Consensus 45 ~~~vS~sTi~Rf~kklG~~gf~e~k~~l~~el 76 (83)
T d2o3fa1 45 LANSSDAAVIRLCKSLGLKGFQDLKMRVAGDL 76 (83)
T ss_dssp HTTCCHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35678888889999999999999998776543
No 4
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=5.67 E-value=3.6e+02 Score=17.03 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=6.6
Q ss_pred HHHhHhhHHHHHHHHHH
Q 047089 30 VNFLAAPLARVTVFQLL 46 (183)
Q Consensus 30 i~~~~~p~~l~~~~~~~ 46 (183)
....+....+..++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDI 257 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccchh
Confidence 33333333444443333
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.44 E-value=3.1e+02 Score=17.12 Aligned_cols=31 Identities=6% Similarity=0.196 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047089 104 IGTYTYSAMFFCIAICLPISVLWIFMDKILM 134 (183)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 134 (183)
+.+.+.+...+...+...+..+.++...+.+
T Consensus 192 vA~viDRi~~~~F~l~~ii~~i~if~~~~~~ 222 (227)
T d1oeda_ 192 VAMVIDHILLCVFMLICIIGTVSVFAGRLIE 222 (227)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555544444434445544444
No 6
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.12 E-value=2.2e+02 Score=13.84 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=13.2
Q ss_pred HHHHHHHHhCccchhhHHHHH
Q 047089 88 LETLCGQAYGAEQYQKIGTYT 108 (183)
Q Consensus 88 ~~~~~s~~~g~~~~~~~~~~~ 108 (183)
+.-.++..+..+..+++|+.+
T Consensus 34 ~c~~vA~~ikgKt~eeiR~~f 54 (55)
T d1fs1b1 34 TCKTVANMIKGKTPEEIRKTF 54 (55)
T ss_dssp HHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 334455555557788888765
No 7
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=4.90 E-value=3.3e+02 Score=15.59 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHH
Q 047089 84 FACALETLCGQAYGAEQYQKIGTYTYSAM 112 (183)
Q Consensus 84 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 112 (183)
.+.+.-++++..|=.++++++++.+...+
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~ 122 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAI 122 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666777777666667777777776654
No 8
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.68 E-value=2.2e+02 Score=13.29 Aligned_cols=25 Identities=8% Similarity=-0.043 Sum_probs=16.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 047089 100 QYQKIGTYTYSAMFFCIAICLPISV 124 (183)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (183)
+-++...++.+++..-..+++..=+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHi 34 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHV 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777776666665555
No 9
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25 E-value=2.3e+02 Score=12.98 Aligned_cols=19 Identities=0% Similarity=-0.150 Sum_probs=10.4
Q ss_pred HHHHHhCccchhhHHHHHH
Q 047089 91 LCGQAYGAEQYQKIGTYTY 109 (183)
Q Consensus 91 ~~s~~~g~~~~~~~~~~~~ 109 (183)
.+|+.++.+..+++++.+.
T Consensus 26 ~Ia~~~~~Rt~~Qcr~r~~ 44 (47)
T d1x41a1 26 DVANQMCTKTKEECEKHYM 44 (47)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 4555555555555555443
No 10
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=3.84 E-value=3.1e+02 Score=15.35 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=0.0
Q ss_pred hCccchhhHHHHHHHHHHH
Q 047089 96 YGAEQYQKIGTYTYSAMFF 114 (183)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~ 114 (183)
||.+..+++++.......+
T Consensus 39 YG~ks~~~I~~~~~~~~~~ 57 (105)
T d1b74a1 39 YGIRSKDTIIRYSLECAGF 57 (105)
T ss_dssp GGGSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Done!