BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047092
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 211 bits (537), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 133/373 (35%), Positives = 210/373 (56%), Gaps = 18/373 (4%)
Query: 109 VNTVQRTLVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTL 168
V + Q +EAW + +VD +FN Q W KL++T ++ P+ Y I +L+ L
Sbjct: 2 VTSEQLLFLEAWRAVDRAYVDKSFNGQSW-FKLRETYLKKEPMDRRAQTYDAIRKLLAVL 60
Query: 169 GDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRTGH-LVVLSCVEDSPAARAGIHEG 227
DPFTR + P + R G+ G++ GVGL I+ + +G +VVL+ PA +AG G
Sbjct: 61 DDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAG 120
Query: 228 DELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRGYIKLS 287
D ++ ++G + G+ + L+G A + V V +H+ G S TR + + R + ++
Sbjct: 121 DVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHA---PGAPSNTRTLQLTRQKVTIN 177
Query: 288 PISRTIIPHRTPDGHLT-----KTGYVKLSAFSQTAAADMANTIHELESEGAHSYILDLR 342
P++ T + + GYV+L+ F+ A EL +G +LD+R
Sbjct: 178 PVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIR 237
Query: 343 NNPVIL---RLDVAQIWLD-GDETLVNAVDREGHTLPINMVDGHAI-THDPLVVLVNEGS 397
NN L ++VA++ +D GD L+ D +G I DG++I + PLVVLVN G+
Sbjct: 238 NNGGGLFPAGVNVARMLVDRGDLVLI--ADSQG-IRDIYSADGNSIDSATPLVVLVNRGT 294
Query: 398 ASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQV 457
ASASE+LAGAL D+ R ++ G +TFGKG IQ+V +L DGS + VTVA+Y +PA DI+++
Sbjct: 295 ASASEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKI 354
Query: 458 GITPDVQCTTDML 470
G++PDVQ ++L
Sbjct: 355 GVSPDVQLDPEVL 367
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/373 (35%), Positives = 206/373 (55%), Gaps = 18/373 (4%)
Query: 109 VNTVQRTLVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTL 168
V + Q +EAW + +VD +FN Q W KL++T ++ P Y I L+ L
Sbjct: 2 VTSEQLLFLEAWRAVDRAYVDKSFNGQSW-FKLRETYLKKEPXDRRAQTYDAIRKXLAVL 60
Query: 169 GDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRTGH-LVVLSCVEDSPAARAGIHEG 227
DPFTR + P + R G+ G++ GVGL I+ + +G +VVL+ PA +AG G
Sbjct: 61 DDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAG 120
Query: 228 DELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRGYIKLS 287
D ++ ++G + G + L+G A + V V +H+ G S TR + + R + ++
Sbjct: 121 DVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVVLHA---PGAPSNTRTLQLTRQKVTIN 177
Query: 288 PISRTIIPHRTPDGHLT-----KTGYVKLSAFSQTAAADMANTIHELESEGAHSYILDLR 342
P++ T + + GYV+L+ F+ A EL +G +LD+R
Sbjct: 178 PVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIR 237
Query: 343 NNPVIL---RLDVAQIWLD-GDETLVNAVDREGHTLPINMVDGHAI-THDPLVVLVNEGS 397
NN L ++VA+ +D GD L+ D +G I DG++I + PLVVLVN G+
Sbjct: 238 NNGGGLFPAGVNVARXLVDRGDLVLI--ADSQG-IRDIYSADGNSIDSATPLVVLVNRGT 294
Query: 398 ASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQV 457
ASASE+LAGAL D+ R ++ G +TFGKG IQ+V +L DGS + VTVA+Y +PA DI+++
Sbjct: 295 ASASEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKI 354
Query: 458 GITPDVQCTTDML 470
G++PDVQ ++L
Sbjct: 355 GVSPDVQLDPEVL 367
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 215 EDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262
E+ PAARAG+ GD+L+E+NG L G + A LRG AGT V ++V
Sbjct: 43 EEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 89
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 215 EDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262
E+ PAARAG+ GD+L+E+NG L G + A LRG AGT V ++V
Sbjct: 55 EEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 101
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 193 QGVGLFISVEPRT-GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR 251
Q G F+ +E T GHL+ + E SPA +AG+ +GD ++ ING +D + A ++L
Sbjct: 14 QNYGFFLRIEKDTDGHLIRV-IEEGSPAEKAGLLDGDRVLRINGVFVDK-EEHAQVVELV 71
Query: 252 GRAGTPVTVKVHSG----KDVGRESGTREVNI 279
++G VT+ V G K V + +E++I
Sbjct: 72 RKSGNSVTLLVLDGDSYEKAVKNQVDLKELDI 103
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 193 QGVGLFISVEPRT-GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR 251
Q G F+ +E T GHL+ + E SPA +AG+ +GD ++ ING +D + A ++L
Sbjct: 25 QNYGFFLRIEKDTDGHLIRV-IEEGSPAEKAGLLDGDRVLRINGVFVDK-EEHAQVVELV 82
Query: 252 GRAGTPVTVKVHSG 265
++G VT+ V G
Sbjct: 83 RKSGNSVTLLVLDG 96
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 193 QGVGLFISVEPRT-GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR 251
Q G F+ +E T GHL+ + E SPA +AG+ +GD ++ ING +D + A ++L
Sbjct: 13 QNYGFFLRIEKDTDGHLIRV-IEEGSPAEKAGLLDGDRVLRINGVFVDK-EEHAQVVELV 70
Query: 252 GRAGTPVTVKVHSG 265
++G VT+ V G
Sbjct: 71 RKSGNSVTLLVLDG 84
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGK 266
+ V +EDSPAA+ G+ EGD+++ +N I E A L L G VT+ K
Sbjct: 26 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 85
Query: 267 DVGR 270
DV R
Sbjct: 86 DVYR 89
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGK 266
+ V +EDSPAA+ G+ EGD+++ +N I E A L L G VT+ K
Sbjct: 33 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92
Query: 267 DVGR 270
DV R
Sbjct: 93 DVYR 96
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266
+ V +EDSPAA+ G+ EGD+++ +N I E A L L G VT+ K
Sbjct: 53 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112
Query: 267 DVGR 270
DV R
Sbjct: 113 DVYR 116
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266
+ V +EDSPAA+ G+ EGD+++ +N I E A L L G VT+ K
Sbjct: 28 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 87
Query: 267 DVGR 270
DV R
Sbjct: 88 DVYR 91
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGK 266
+ V +EDSPAA+ G+ EGD+++ +N I E A L L G VT+ K
Sbjct: 25 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84
Query: 267 DVGR 270
DV R
Sbjct: 85 DVYR 88
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 177 SPKEYQSFRIGSDGNLQGVGLFISVEPRTGH-----LVVLSCVEDSPAARAG-IHEGDEL 230
S +++ F + + +G G I R G L VL ED PA R G + GD++
Sbjct: 6 SGQDFDYFTVDMEKGAKGFGFSI----RGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQI 61
Query: 231 IEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESG 273
IEINGE + + A A++L G V + + G G SG
Sbjct: 62 IEINGESTRDM-THARAIELIKSGGRRVRLLLKRGTGSGPSSG 103
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 22/88 (25%)
Query: 216 DSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTR 275
+SPA+ G+ GD++++INGE G S+ A L+ G +T+
Sbjct: 37 NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITM--------------- 81
Query: 276 EVNIPRGYIKLSPISRTIIPHRTPDGHL 303
I+ P RTI H+ GH+
Sbjct: 82 -------TIRDRPFERTITMHKDSTGHV 102
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 210 VLSCVEDSPAARAGIHEGDELIEINGERLDGI-DSEAAALKLRGRAGTPVTVKV 262
+ S V+DS AAR G+ + EING+ + G+ DS+ A + +GT VT+ +
Sbjct: 111 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIA--DILSTSGTVVTITI 162
>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
Length = 583
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 388 PLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKG 425
P+ VL+NE S ++ L DN RA++VG +T G G
Sbjct: 456 PICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAG 493
>pdb|3DJA|A Chain A, Crystal Structure Of Cpaf Solved With Mad
pdb|3DJA|B Chain B, Crystal Structure Of Cpaf Solved With Mad
Length = 579
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 388 PLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKG 425
P+ VL+NE S ++ L DN RA++VG +T G G
Sbjct: 458 PICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAG 495
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 216 DSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTR 275
+SPA+ G+ GD++++INGE G S+ A L+ G +T
Sbjct: 37 NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITX--------------- 81
Query: 276 EVNIPRGYIKLSPISRTIIPHRTPDGHL 303
I+ P RTI H+ GH+
Sbjct: 82 -------TIRDRPFERTITXHKDSTGHV 102
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 210 VLSCVEDSPAARAGIHEGDELIEINGERLDGI-DSEAAALKLRGRAGTPVTVKV 262
+ S V+DS AAR G+ + EING+ + G+ DS+ A + +GT VT+ +
Sbjct: 111 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIA--DILSTSGTVVTITI 162
>pdb|3DPN|A Chain A, Crystal Structure Of Cpaf S499a Mutant
pdb|3DPN|B Chain B, Crystal Structure Of Cpaf S499a Mutant
Length = 583
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 388 PLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKG 425
P+ VL+NE + ++ L DN RA++VG +T G G
Sbjct: 456 PICVLINEQDFACADFFPVVLKDNDRALIVGTRTAGAG 493
>pdb|3K50|A Chain A, Crystal Structure Of Putative S41 Protease (Yp_211611.1)
From Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
Length = 403
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 51/264 (19%)
Query: 197 LFISVEPRTGHLVVLS-CVEDSPAARAGIHEGDELIEINGERL-DGIDSEAAALKLRGRA 254
L+ ++ T + ++S V SPA AG+ G + NG+ + ++SE
Sbjct: 80 LYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIXXXNGDYITKKVESELL-------Q 132
Query: 255 GTPVTVKVHSGKDVGRESGTREVN---IPRGYIKLSPISRTIIP---HRTP--DGHLTKT 306
G+ +++ K+V E G EV +P G P SR+++ HR + K
Sbjct: 133 GSTRQLQIGVYKEVVGEDG--EVTGGVVPIGETT-XPASRSLVDKPVHRFEIIPWNGKKV 189
Query: 307 GYVKLSAF-------SQTAAADMANTIHELESEGAHSYILDLRNNPVILRLDVAQIWLDG 359
GY+ + F SQ D+ + ++ G + ++LDLR N LD AQ+
Sbjct: 190 GYLXYNEFKAGPTTDSQAYNDDLRRAFRDFQTGGVNEFVLDLRYN-TGGSLDCAQLLC-- 246
Query: 360 DETLVNAVDREGHTL-------------------PINMVDGHAITHDPLVVLVNEGSASA 400
T + D+ L P + G + + VL + A
Sbjct: 247 --TXLAPADKXNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNATRGA 304
Query: 401 SEILAGALHDNGRAILVGHKTFGK 424
+E + L+ + +L+G KT G+
Sbjct: 305 AEXVINCLNPYXKVVLIGTKTAGE 328
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 208 LVVLSCVEDSPAARAG-IHEGDELIEINGE 236
L VL ED PA R+G + GDE++EINGE
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGE 80
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGI 241
QG G + + + S SPAAR+G+ D LIE+NG+ ++G+
Sbjct: 15 QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 63
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTV 260
T H +V + E SPA +AG+ GD + INGE + G+ ++L ++G V++
Sbjct: 32 TVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGL-VHTEVIELLLKSGNKVSI 86
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 217 SPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG 252
SPA +AG+ GD L+E+NGE ++ + ++R
Sbjct: 38 SPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 217 SPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG 252
SPA +AG+ GD L+E+NGE ++ + ++R
Sbjct: 37 SPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 72
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 217 SPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG 252
SPA +AG+ GD L+E+NGE ++ + ++R
Sbjct: 38 SPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 217 SPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG 252
SPA +AG+ GD L+E+NGE ++ + ++R
Sbjct: 38 SPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGI 241
T H VV S + SPA AG+ GD + INGE + G+
Sbjct: 33 TVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGL 69
>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBY|B Chain B, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBX|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
An Interleukin 5 Receptor Alpha Peptide
Length = 79
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 210 VLSCVEDSPAARAGIHEGDELIEINGERLDGI-DSEAAALKLRGRAGTPVTVKV 262
+ S V+DS AAR G+ + EING+ + G+ DS+ A + +GT VT+ +
Sbjct: 27 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIA--DILSTSGTVVTITI 78
>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of
Syntenin
pdb|1R6J|A Chain A, Ultrahigh Resolution Crystal Structure Of Syntenin Pdz2
Length = 82
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 210 VLSCVEDSPAARAGIHEGDELIEINGERLDGI-DSEAAALKLRGRAGTPVTVKV 262
+ S V+DS AAR G+ + EING+ + G+ DS+ A + +GT VT+ +
Sbjct: 27 ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIA--DILSTSGTVVTITI 78
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 218 PAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262
PA +AG+ GD L+ + GE ++G+ E +++G+ G+ V++ V
Sbjct: 42 PAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTV 85
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 191 NLQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEING 235
N + +G I + +TG ++V A R+G IH GDEL E+NG
Sbjct: 13 NREPLGATIKKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNG 58
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 262 VHSGKDVGRESGTREVNIPRGYIKLSPISRTIIPHRT--PDGHLTKTGYVKLSAFSQTAA 319
VH ++ GR+ G NI RG KL + R + R PDG K + ++ +
Sbjct: 166 VHKDREFGRKLGFPTANIDRGNEKLVDLKRGVYLVRVHLPDG---KKKFGVMNVGFRPTV 222
Query: 320 ADMANTIHELESEGAHSYILDLRNNPVILRLDVAQIWLDGDETLVNAVD 368
D N +E+ YILD + RL + + DE ++++
Sbjct: 223 GDARNVKYEV-------YILDFEGDLYGQRLKLEVLKFMRDEKKFDSIE 264
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 262 VHSGKDVGRESGTREVNIPRGYIKLSPISRTIIPHRT--PDGHLTKTGYVKLSAFSQTAA 319
VH ++ GR+ G NI RG KL + R + R PDG K G V F T
Sbjct: 166 VHKDREFGRKLGFPTANIDRGNEKLVDLKRGVYLVRVHLPDGK-KKFG-VXNVGFRPT-V 222
Query: 320 ADMANTIHELESEGAHSYILDLRNNPVILRLDVAQIWLDGDETLVNAVD 368
D N +E+ YILD + RL + + DE ++++
Sbjct: 223 GDARNVKYEV-------YILDFEGDLYGQRLKLEVLKFXRDEKKFDSIE 264
>pdb|2XUD|A Chain A, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUD|B Chain B, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUH|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUH|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUI|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUI|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUJ|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUJ|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUK|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUK|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUO|A Chain A, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUO|B Chain B, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUP|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUP|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUQ|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
pdb|2XUQ|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
Length = 543
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G A LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSAFLV 340
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEING 235
+ V S ED A RAG+ GD +I++NG
Sbjct: 30 VFVQSVKEDGAAMRAGVQTGDRIIKVNG 57
>pdb|2XUF|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUF|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUG|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
pdb|2XUG|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
Length = 544
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G A LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSAFLV 340
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR 253
G G ++ P ++ SPA AG+ D ++ +NG+ ++ +D + +R +
Sbjct: 14 GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIR-K 72
Query: 254 AGTPVTVKV 262
G T+ V
Sbjct: 73 GGDQTTLLV 81
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 176 ISPKEYQSFRIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAAR-AGIHEGDELIEIN 234
I+ K+ + RI +G+L + L V+ G +VV + E A R G+ +GDE++ IN
Sbjct: 14 IAGKDVRLLRIKKEGSLD-LALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN 72
Query: 235 GE 236
G+
Sbjct: 73 GK 74
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 188 SDGNLQGVGLFIS-VEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAA 246
S G +Q G+FIS V+P S +A G+ GD+++E+NG +D + A
Sbjct: 20 SSGPIQKPGIFISHVKP------------GSLSAEVGLEIGDQIVEVNGVDFSNLDHKEA 67
Query: 247 ALKLRGRAGTPVTVKVHSGKDV 268
L+ +++ +G+++
Sbjct: 68 VNVLKSSRSLTISIVAAAGREL 89
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR 253
G G ++ P ++ SPA AG+ D ++ +NG+ ++ +D + +R +
Sbjct: 17 GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIR-K 75
Query: 254 AGTPVTVKV 262
G T+ V
Sbjct: 76 GGDQTTLLV 84
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEINGERL-DGIDSEAAALKLRGRAGTPVTVKVHSGK 266
+ V +SP+ R GI +GD ++++NG L D + + A L +P+ ++V G
Sbjct: 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVL-----TESPLLLEVRRGN 91
Query: 267 D 267
D
Sbjct: 92 D 92
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 176 ISPKEYQSFRI-GSDGNLQGVGLFISVEPRTG--HLVVLSCVEDSPAARAGIHEGDELIE 232
I PK QS I SD G +S G L V S E A++ G+ GDE++E
Sbjct: 11 ICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILE 70
Query: 233 INGERLDGIDS 243
IN D ++S
Sbjct: 71 INNRAADALNS 81
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 174 RIISPKEYQSFRIGSD---GNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDEL 230
RI++ K+ ++G + G +G+FIS + DS A RAG+ EGD++
Sbjct: 17 RIVTLKKPPGAQLGFNIRGGKASQLGIFIS-----------KVIPDSDAHRAGLQEGDQV 65
Query: 231 IEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVG 269
+ +N I+ A L+ + V+ SG G
Sbjct: 66 LAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSGPSSG 104
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDG-IDSEAAALKLR 251
T H +V + PA+ AG+ +GD + +NGE + G + +E L L+
Sbjct: 35 TVHHMVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILK 82
>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
Synthase
Length = 410
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 366 AVDREGHTLPI---NMVD------GHAITHDPLVVLVNEGSASASEILAGALHDNGRAIL 416
A+ ++ H LP MVD G+ +T DP +++ G+ SA+E L D G A+L
Sbjct: 63 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVL 122
Query: 417 V 417
+
Sbjct: 123 I 123
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 366 AVDREGHTLPI---NMVD------GHAITHDPLVVLVNEGSASASEILAGALHDNGRAIL 416
A+ ++ H LP MVD G+ +T DP +++ G+ SA+E L D G A+L
Sbjct: 80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVL 139
Query: 417 V 417
+
Sbjct: 140 I 140
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 366 AVDREGHTLPI---NMVD------GHAITHDPLVVLVNEGSASASEILAGALHDNGRAIL 416
A+ ++ H LP MVD G+ +T DP +++ G+ SA+E L D G A+L
Sbjct: 78 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVL 137
Query: 417 V 417
+
Sbjct: 138 I 138
>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60
pdb|1DDG|B Chain B, Crystal Structure Of Sir-Fp60
pdb|1DDI|A Chain A, Crystal Structure Of Sir-Fp60
Length = 374
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 342 RNNPVILRLDVAQIWLDGDETLVNAVDREGHTLPIN 377
+N+P +++ V +WL GDE V EG TLP+N
Sbjct: 56 QNDPALVKELVELLWLKGDE----PVTVEGKTLPLN 87
>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L-Vinylglycine
Length = 473
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 366 AVDREGHTLPI---NMVD------GHAITHDPLVVLVNEGSASASEILAGALHDNGRAIL 416
A+ ++ H LP MVD G+ +T DP +++ G+ SA+E L D G A+L
Sbjct: 80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVL 139
Query: 417 V 417
+
Sbjct: 140 I 140
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 215 EDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVK 261
EDSPA AG+ GD L ING +G + +R +G +T++
Sbjct: 57 EDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS-SGNLLTIE 102
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 188 SDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGI 241
SDG L+ G I ++ V+ SPAA+AG+ + D +I +N +R++ I
Sbjct: 354 SDGQLKDGGKGIKID---------EVVKGSPAAQAGLQKDDVIIGVNRDRVNSI 398
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 188 SDGNLQGVGLFIS-VEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAA 246
S G +Q G+FIS V+P S +A G+ GD+++E+NG +D + A
Sbjct: 34 SSGPIQKPGIFISHVKP------------GSLSAEVGLEIGDQIVEVNGVDFSNLDHKEA 81
Query: 247 ALKLRGRAGTPVTVKVHSGKDV 268
L+ +++ +G+++
Sbjct: 82 VNVLKSSRSLTISIVAAAGREL 103
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDS 243
L V S E A++ G+ GDE++EIN D ++S
Sbjct: 36 RLYVNSVKETGLASKKGLKAGDEILEINNRAADALNS 72
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 535
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 273 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 331
Query: 418 -GHKTFGK 424
G F K
Sbjct: 332 YGVPGFSK 339
>pdb|3DL7|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 534
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 273 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 331
Query: 418 -GHKTFGK 424
G F K
Sbjct: 332 YGVPGFSK 339
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 277 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 335
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
Length = 533
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 273 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 331
Query: 418 -GHKTFGK 424
G F K
Sbjct: 332 YGVPGFSK 339
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 536
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 276 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 334
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG 252
G G ++ P ++ SPA AG+ D ++ +NG+ ++ +D + +R
Sbjct: 17 NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIR- 75
Query: 253 RAGTPVTVKV 262
+ G T+ V
Sbjct: 76 KGGDQTTLLV 85
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 192 LQGVGLFISVEPRTGHLVVLSCV-EDSPAARAGIHEGDELIEINGERLDGI 241
+Q GL E R + ++ V E SPA AG+ GD + +NG ++GI
Sbjct: 22 IQTYGLHHREEQRVEXVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGI 72
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 208 LVVLSCVEDSPAARAGI-HEGDELIEINGERLDGID 242
+++ V+ A ++G+ HEGDE++EING + G D
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD 85
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDG 240
+ V E PA AG+ GD +I++NGE + G
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIG 95
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 224 IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264
+ GD++I +NG+ L+G+ E A L+ GT VT+ V S
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGT-VTLMVLS 111
>pdb|4A16|A Chain A, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|B Chain B, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|C Chain C, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|D Chain D, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
Length = 545
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 279 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 337
>pdb|1N5M|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
pdb|1N5M|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
Length = 541
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|1MAA|A Chain A, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|B Chain B, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|C Chain C, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
Length = 547
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 14/64 (21%)
Query: 177 SPKEYQSFRIGSDGNLQGVGLFIS-VEPRTGHLVVLSCVEDSPAARAGIHEGDELIEING 235
SP F + G+ G+G+F+S VE E S A RAG+ GD++ E+NG
Sbjct: 19 SPAGRLGFSV-RGGSEHGLGIFVSKVE------------EGSSAERAGLCVGDKITEVNG 65
Query: 236 ERLD 239
L+
Sbjct: 66 LSLE 69
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 192 LQGVGLFISVEPRTGHLVVLSCV-EDSPAARAGIHEGDELIEINGERLDGI 241
+Q GL E R + ++ V E SPA AG+ GD + +NG ++GI
Sbjct: 22 IQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGI 72
>pdb|1KU6|A Chain A, Fasciculin 2-Mouse Acetylcholinesterase Complex
Length = 549
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholinesterase
Length = 540
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 279 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 337
>pdb|1Q83|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q83|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q84|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
pdb|1Q84|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
Length = 580
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 313 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 371
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDG-IDSEAAALKLRGRAGTPVT 259
H +V E PA AG+ GD + +NGE + G + E L L+ VT
Sbjct: 38 HHIVWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGNKVAVT 91
>pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|B Chain B, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|C Chain C, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|D Chain D, Electrophorus Electricus Acetylcholinesterase
Length = 539
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 278 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 336
>pdb|1MAH|A Chain A, Fasciculin2-Mouse Acetylcholinesterase Complex
pdb|1J06|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J06|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J07|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1J07|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1N5R|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|1N5R|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|2H9Y|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2H9Y|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2HA0|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA0|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA2|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA2|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2HA3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2GYU|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYU|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYV|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYV|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYW|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2GYW|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2WLS|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|2WLS|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|4BC0|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC1|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
Length = 543
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|2WHP|B Chain B, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin And In Complex With Hi-6
Length = 548
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|2JGF|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGF|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGI|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGI|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGK|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGK|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGL|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGL|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGM|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGM|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JEZ|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JEZ|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JF0|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|2JF0|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|3DL4|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|3DL4|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|2WHP|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin And In Complex With Hi-6
pdb|2WHQ|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WHQ|B Chain B, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WU3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU4|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2WU4|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2Y2U|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2U|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2V|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
pdb|2Y2V|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
Length = 548
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|2C0P|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0P|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0Q|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2C0Q|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2JEY|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2JEY|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2WHR|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|2WHR|B Chain B, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|4A23|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4A23|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4ARA|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARA|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARB|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution.
pdb|4ARB|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution
Length = 548
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|2HA4|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA4|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA5|A Chain A, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA5|B Chain B, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA6|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA6|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA7|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
pdb|2HA7|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
Length = 543
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 367 VDREGHTLP---------INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417
VD E H LP + +VDG ++ P L+N G ++L G + D G LV
Sbjct: 282 VDHEWHVLPQESIFRFSFVPVVDGDFLSDTP-EALINTGDFQDLQVLVGVVKDEGSYFLV 340
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 190 GNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAAL 248
G G G+F+S + PA +G + GD+++ +NG L G E AA
Sbjct: 22 GGEDGEGIFVSF-----------ILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAA 70
Query: 249 KLRGRAGTPVTV 260
L+G AG VT+
Sbjct: 71 ALKG-AGQTVTI 81
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 217 SPAARAGIHEGDELIEINGERLDG 240
SPA A + GD L+E+NG ++G
Sbjct: 36 SPAEAAALRAGDRLVEVNGVNVEG 59
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 163 GMLSTLGDPFTRIISPKEYQSFRIGSDGNLQ-GVGLFISVEPRTG---------HLVVLS 212
M T G P T ++ E R G + L +G I +P + V
Sbjct: 1 AMSYTPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTR 60
Query: 213 CVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRA 254
E PA AG+ GD+++++NG + + + A +L R+
Sbjct: 61 VSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRS 102
>pdb|2ZF8|A Chain A, Crystal Structure Of Moty
Length = 278
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 119 AWGLIRETFVD--PTFNHQDWDSKLQQTMVEI 148
AWG++ E PTF++QDW S+ Q+ V +
Sbjct: 101 AWGILSELEKGRYPTFSYQDWQSRDQRIEVAL 132
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 28.5 bits (62), Expect = 9.2, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 164 MLSTLGDPFTRIISPKEYQSFRIGSDGNLQ-GVGLFISVEPRTG---------HLVVLSC 213
M T G P T ++ E R G + L +G I +P + V
Sbjct: 1 MSYTPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRV 60
Query: 214 VEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRA 254
E PA AG+ GD+++++NG + + + A +L R+
Sbjct: 61 SEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRS 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,923,907
Number of Sequences: 62578
Number of extensions: 562708
Number of successful extensions: 1665
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 133
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)