Query 047092
Match_columns 510
No_of_seqs 308 out of 2776
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00049 carboxyl-terminal pro 100.0 1.9E-62 4.1E-67 513.5 45.1 353 110-470 3-363 (389)
2 COG0793 Prc Periplasmic protea 100.0 3.7E-60 8.1E-65 495.6 38.3 332 153-504 60-395 (406)
3 PRK11186 carboxy-terminal prot 100.0 5E-56 1.1E-60 485.1 41.0 360 96-468 141-527 (667)
4 TIGR00225 prc C-terminal pepti 100.0 1.7E-51 3.7E-56 423.7 40.1 305 154-471 12-319 (334)
5 cd07562 Peptidase_S41_TRI Tric 100.0 9.2E-41 2E-45 333.5 21.4 262 112-502 2-266 (266)
6 cd06567 Peptidase_S41 C-termin 100.0 1.4E-36 3E-41 295.8 26.2 220 116-466 1-224 (224)
7 cd07563 Peptidase_S41_IRBP Int 100.0 7.8E-35 1.7E-39 288.3 24.5 224 116-469 2-241 (250)
8 smart00245 TSPc tail specific 100.0 5.8E-33 1.3E-37 264.2 23.3 186 274-466 3-192 (192)
9 cd07560 Peptidase_S41_CPP C-te 100.0 2.4E-31 5.2E-36 256.4 21.3 159 306-466 50-211 (211)
10 cd07561 Peptidase_S41_CPP_like 100.0 5.5E-31 1.2E-35 260.8 21.0 167 303-469 63-245 (256)
11 PF03572 Peptidase_S41: Peptid 100.0 4.7E-28 1E-32 224.7 17.4 160 305-465 1-169 (169)
12 PF14684 Tricorn_C1: Tricorn p 99.4 1.1E-13 2.4E-18 109.9 3.6 68 110-177 2-69 (70)
13 PF13180 PDZ_2: PDZ domain; PD 99.3 3.2E-11 7E-16 98.7 11.4 79 194-280 2-81 (82)
14 cd00988 PDZ_CTP_protease PDZ d 99.2 3.6E-10 7.9E-15 92.6 12.3 83 192-281 1-83 (85)
15 cd00136 PDZ PDZ domain, also c 99.0 2.3E-09 4.9E-14 84.5 8.9 68 194-262 2-69 (70)
16 PF00595 PDZ: PDZ domain (Also 98.9 4.4E-09 9.5E-14 85.6 8.7 71 192-263 9-81 (81)
17 cd00989 PDZ_metalloprotease PD 98.8 4.1E-08 9E-13 79.1 10.2 75 195-279 3-77 (79)
18 cd00991 PDZ_archaeal_metallopr 98.8 5E-08 1.1E-12 79.2 10.5 68 205-280 9-77 (79)
19 cd00990 PDZ_glycyl_aminopeptid 98.8 4.2E-08 9.2E-13 79.4 10.0 74 195-280 3-76 (80)
20 PF14685 Tricorn_PDZ: Tricorn 98.7 1.1E-07 2.4E-12 78.5 9.7 76 194-278 2-87 (88)
21 smart00228 PDZ Domain present 98.6 3E-07 6.6E-12 74.6 9.7 72 193-265 12-84 (85)
22 cd00992 PDZ_signaling PDZ doma 98.6 3.1E-07 6.8E-12 74.3 8.7 69 193-262 12-81 (82)
23 cd00986 PDZ_LON_protease PDZ d 98.6 5.1E-07 1.1E-11 73.1 9.7 66 206-280 8-74 (79)
24 cd00987 PDZ_serine_protease PD 98.5 8.2E-07 1.8E-11 73.2 9.6 59 205-265 23-82 (90)
25 COG3975 Predicted protease wit 98.3 1.6E-06 3.5E-11 91.5 8.7 146 108-280 373-521 (558)
26 TIGR02037 degP_htrA_DO peripla 98.2 1.1E-05 2.4E-10 86.3 11.3 67 206-280 257-324 (428)
27 TIGR01713 typeII_sec_gspC gene 98.2 1.7E-05 3.7E-10 79.0 11.7 66 206-279 191-257 (259)
28 PRK10139 serine endoprotease; 98.1 1E-05 2.2E-10 87.1 10.4 67 206-280 290-357 (455)
29 TIGR00054 RIP metalloprotease 98.1 8.7E-06 1.9E-10 86.8 9.5 67 207-281 204-270 (420)
30 TIGR02038 protease_degS peripl 98.1 1.2E-05 2.6E-10 83.7 9.7 67 206-280 278-345 (351)
31 PRK10898 serine endoprotease; 98.1 1.6E-05 3.4E-10 82.9 10.2 68 206-281 279-347 (353)
32 PF04495 GRASP55_65: GRASP55/6 98.0 3.8E-05 8.2E-10 69.1 10.5 84 193-282 26-114 (138)
33 PRK10779 zinc metallopeptidase 98.0 1.6E-05 3.5E-10 85.5 9.7 68 207-282 222-289 (449)
34 PRK10779 zinc metallopeptidase 98.0 1.2E-05 2.6E-10 86.5 7.8 57 208-266 128-185 (449)
35 PRK10942 serine endoprotease; 98.0 3.5E-05 7.5E-10 83.4 10.3 67 206-280 311-378 (473)
36 KOG3209 WW domain-containing p 97.9 1.4E-05 3.1E-10 86.2 6.6 74 192-266 764-838 (984)
37 KOG3550 Receptor targeting pro 97.9 0.00027 5.8E-09 63.1 12.0 93 160-263 78-172 (207)
38 TIGR02860 spore_IV_B stage IV 97.8 0.00012 2.6E-09 76.6 11.5 76 194-281 97-180 (402)
39 TIGR02037 degP_htrA_DO peripla 97.8 6.5E-05 1.4E-09 80.4 9.6 59 206-266 362-421 (428)
40 TIGR03279 cyano_FeS_chp putati 97.8 4.8E-05 1E-09 80.1 6.9 63 210-282 2-64 (433)
41 PRK10139 serine endoprotease; 97.7 0.00011 2.5E-09 79.0 9.7 58 206-266 390-447 (455)
42 KOG3553 Tax interaction protei 97.6 5.6E-05 1.2E-09 62.7 4.0 47 205-251 58-104 (124)
43 PRK10942 serine endoprotease; 97.6 0.00022 4.8E-09 77.2 9.7 58 206-266 408-465 (473)
44 KOG3129 26S proteasome regulat 97.6 0.00079 1.7E-08 63.5 11.3 70 207-282 140-210 (231)
45 TIGR00054 RIP metalloprotease 97.5 0.00094 2E-08 71.3 12.7 57 207-266 129-185 (420)
46 COG0265 DegQ Trypsin-like seri 97.3 0.0012 2.5E-08 68.7 9.7 67 206-280 270-337 (347)
47 KOG3209 WW domain-containing p 97.1 0.0011 2.3E-08 72.3 7.7 75 191-265 353-432 (984)
48 KOG3549 Syntrophins (type gamm 96.8 0.0018 3.9E-08 65.2 5.8 73 191-264 64-138 (505)
49 KOG3580 Tight junction protein 96.8 0.002 4.4E-08 68.8 6.1 69 194-263 418-487 (1027)
50 COG3480 SdrC Predicted secrete 96.7 0.0071 1.5E-07 60.8 8.6 57 207-266 131-188 (342)
51 PRK09681 putative type II secr 96.7 0.014 3E-07 58.4 10.5 60 212-279 210-273 (276)
52 KOG1892 Actin filament-binding 96.6 0.0039 8.4E-08 69.9 7.0 73 193-266 943-1020(1629)
53 KOG3651 Protein kinase C, alph 96.6 0.0049 1.1E-07 61.1 6.6 57 207-264 31-88 (429)
54 KOG3552 FERM domain protein FR 96.6 0.0029 6.3E-08 70.8 5.5 67 192-265 66-132 (1298)
55 KOG3580 Tight junction protein 96.5 0.0061 1.3E-07 65.4 6.9 57 207-265 41-97 (1027)
56 KOG3551 Syntrophins (type beta 96.3 0.0046 1E-07 63.2 4.4 72 191-263 94-167 (506)
57 KOG1421 Predicted signaling-as 96.2 0.015 3.2E-07 63.6 8.0 69 205-282 302-370 (955)
58 KOG3542 cAMP-regulated guanine 96.0 0.0073 1.6E-07 65.6 4.4 59 205-265 561-619 (1283)
59 KOG3532 Predicted protein kina 95.9 0.021 4.6E-07 62.3 7.7 68 192-262 385-452 (1051)
60 KOG0609 Calcium/calmodulin-dep 95.6 0.024 5.1E-07 60.7 6.5 71 193-265 134-205 (542)
61 KOG3605 Beta amyloid precursor 95.4 0.02 4.4E-07 62.2 5.0 83 194-283 658-746 (829)
62 KOG3571 Dishevelled 3 and rela 94.8 0.037 8.1E-07 58.6 5.0 70 195-264 263-338 (626)
63 KOG1320 Serine protease [Postt 93.9 0.2 4.3E-06 53.7 8.2 67 207-281 399-466 (473)
64 KOG3606 Cell polarity protein 93.5 0.23 4.9E-06 48.9 7.0 59 206-265 194-253 (358)
65 COG3031 PulC Type II secretory 93.0 0.29 6.4E-06 47.5 6.8 49 216-266 217-266 (275)
66 KOG0606 Microtubule-associated 92.7 0.15 3.3E-06 58.9 5.3 54 208-262 660-713 (1205)
67 PF12812 PDZ_1: PDZ-like domai 92.4 0.33 7.2E-06 39.2 5.5 43 208-252 32-74 (78)
68 KOG3834 Golgi reassembly stack 92.3 0.56 1.2E-05 49.2 8.3 69 207-282 110-180 (462)
69 KOG3605 Beta amyloid precursor 91.4 0.16 3.5E-06 55.5 3.4 47 209-255 759-805 (829)
70 KOG3938 RGS-GAIP interacting p 91.4 0.38 8.2E-06 47.3 5.6 71 194-265 138-210 (334)
71 KOG1738 Membrane-associated gu 90.8 0.38 8.2E-06 52.7 5.5 61 191-252 211-272 (638)
72 KOG3834 Golgi reassembly stack 87.9 1.3 2.8E-05 46.5 6.6 70 207-282 16-86 (462)
73 COG0750 Predicted membrane-ass 84.9 2.5 5.5E-05 44.1 7.2 52 211-264 134-188 (375)
74 PF11874 DUF3394: Domain of un 83.7 1.8 3.9E-05 40.8 4.8 39 194-234 112-150 (183)
75 cd07021 Clp_protease_NfeD_like 81.5 9 0.00019 36.0 8.7 66 318-409 14-81 (178)
76 cd07020 Clp_protease_NfeD_1 No 73.9 23 0.00049 33.4 9.1 67 318-410 14-85 (187)
77 cd07015 Clp_protease_NfeD Nodu 60.8 50 0.0011 30.9 8.4 68 317-410 13-85 (172)
78 KOG2921 Intramembrane metallop 53.0 19 0.00042 37.7 4.5 45 205-251 219-264 (484)
79 KOG1421 Predicted signaling-as 43.1 93 0.002 35.2 8.0 56 206-264 862-918 (955)
80 cd00394 Clp_protease_like Case 42.1 84 0.0018 28.3 6.7 66 318-409 12-80 (161)
81 COG1030 NfeD Membrane-bound se 41.5 1.5E+02 0.0032 31.9 9.0 65 304-368 26-94 (436)
82 PF01740 STAS: STAS domain; I 38.9 1.5E+02 0.0032 24.9 7.4 42 304-345 8-59 (117)
83 cd07041 STAS_RsbR_RsbS_like Su 36.5 2.3E+02 0.005 23.4 8.1 41 305-345 10-52 (109)
84 TIGR02886 spore_II_AA anti-sig 36.2 2.4E+02 0.0053 23.1 8.5 41 305-345 8-50 (106)
85 TIGR00706 SppA_dom signal pept 32.2 2.2E+02 0.0048 27.1 8.1 67 318-408 14-83 (207)
86 COG5233 GRH1 Peripheral Golgi 31.4 24 0.00052 36.0 1.2 46 192-239 51-96 (417)
87 TIGR00377 ant_ant_sig anti-ant 30.0 1.6E+02 0.0034 24.3 6.0 41 305-345 12-54 (108)
88 PRK14512 ATP-dependent Clp pro 28.5 2.8E+02 0.0062 26.3 8.1 79 305-410 24-105 (197)
89 COG4100 Cystathionine beta-lya 26.7 32 0.00069 35.1 1.2 20 222-241 101-121 (416)
90 TIGR02811 formate_TAT formate 26.3 1.3E+02 0.0028 23.5 4.3 14 61-74 10-23 (66)
91 KOG4407 Predicted Rho GTPase-a 23.2 45 0.00098 40.2 1.7 45 206-250 143-187 (1973)
92 cd07043 STAS_anti-anti-sigma_f 20.9 4.2E+02 0.0092 20.9 7.9 41 305-345 8-49 (99)
93 cd07560 Peptidase_S41_CPP C-te 20.5 1.7E+02 0.0037 28.1 4.9 44 114-178 6-49 (211)
94 cd06844 STAS Sulphate Transpor 20.4 4.7E+02 0.01 21.2 8.0 41 305-345 8-50 (100)
95 KOG4371 Membrane-associated pr 20.3 1E+02 0.0022 36.5 3.6 75 188-265 1153-1227(1332)
96 cd07042 STAS_SulP_like_sulfate 20.1 4.6E+02 0.01 21.0 7.6 42 304-345 8-52 (107)
No 1
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=100.00 E-value=1.9e-62 Score=513.47 Aligned_cols=353 Identities=39% Similarity=0.659 Sum_probs=307.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCC
Q 047092 110 NTVQRTLVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSD 189 (510)
Q Consensus 110 ~~~q~~f~e~w~~i~~~Y~~~~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~ 189 (510)
++.+++|+++|+.++++||+++++|+||++..++|.+.. +..+.++++.+|++|+++|+|+|++|++++++..+.....
T Consensus 3 ~~~~~~f~e~w~~v~~~~~d~~~~g~dW~~~~e~y~~~~-~~~~~~~~~~~i~~ml~~L~D~hs~y~~~~~~~~~~~~~~ 81 (389)
T PLN00049 3 TEENLLFLEAWRTVDRAYVDKTFNGQSWFRYRENALKNE-PMNTREETYAAIRKMLATLDDPFTRFLEPEKFKSLRSGTK 81 (389)
T ss_pred ccHHHHHHHHHHHHHHHHcCccccccCHHHHHHHHhhcc-CCCcHHHHHHHHHHHHhhCCCCcccCcCHHHHHHHHHhcc
Confidence 457899999999999999999999999999999988875 6788889999999999999999999999999998887778
Q ss_pred CceeeeeEEEEEEcCC----CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 190 GNLQGVGLFISVEPRT----GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 190 g~~~glGi~l~~~~~~----g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
+.+.|+|+.+.....+ .+++|..|.+||||+++||++||+|++|||+++.+++..++..++++..|+.|.|+|.|+
T Consensus 82 ~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 82 GAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred CCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 8899999998764322 168999999999999999999999999999999998878888899999999999999987
Q ss_pred CCCCCCCceEEEEEecceeeeCCCcceeeeccCCCCCcCceEEEEecccchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 047092 266 KDVGRESGTREVNIPRGYIKLSPISRTIIPHRTPDGHLTKTGYVKLSAFSQTAAADMANTIHELESEGAHSYILDLRNNP 345 (510)
Q Consensus 266 ~~~~~~g~~~~vtl~r~~~~~~~v~~~~i~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~ 345 (510)
++.++++|+|..+..+|+....+.....+..+++||||+|++|..++.+++.++|++++++++++||||||+|+
T Consensus 162 ------g~~~~~~l~r~~v~~~~v~~~~~~~~~~~~~~~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~~~glIlDLR~N~ 235 (389)
T PLN00049 162 ------PETRLVTLTREKVSLNPVKSRLCEVPGPGAGSPKIGYIKLTTFNQNASSAVKEAIETLRANGVDAFVLDLRDNS 235 (389)
T ss_pred ------CEEEEEEEEeeeEeccceeeEEEeeccccCCCCCEEEEEeccccchhHHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 57889999999998888877654211111113589999999999999999999999999999999999999999
Q ss_pred ---hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCC-CccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCC
Q 047092 346 ---VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDG-HAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKT 421 (510)
Q Consensus 346 ---~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~-~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T 421 (510)
+..+..++++|++++ .++++..+.+....+..... ...+.+|++||||++||||||+|+++||+++++++||++|
T Consensus 236 GG~~~~a~~ia~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~alk~~~~~~vvG~~T 314 (389)
T PLN00049 236 GGLFPAGIEIAKLWLDKG-VIVYIADSRGVRDIYDADGSSAIATSEPLAVLVNKGTASASEILAGALKDNKRAVVLGEPT 314 (389)
T ss_pred CCCHHHHHHHHHHhcCCC-cEEEEecCCCceeEEecCCCccccCCCCEEEEECCCCccHHHHHHHHHhhCCCeEEEecCC
Confidence 667889999999987 46666666555433333222 2347899999999999999999999999999999999999
Q ss_pred CCCceeeeEEEcCCCcEEEEEEEEEEcCCCCcccCCCccccEEecCCCC
Q 047092 422 FGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTDML 470 (510)
Q Consensus 422 ~G~g~~~~~~~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~~~~~ 470 (510)
+|++..|..+.|+||+.+++|+++|++|+|+.+|+.||.||+.|+....
T Consensus 315 ~Gkg~~q~~~~L~dG~~l~lt~~~~~~p~G~~ie~~Gi~PDi~v~~~~~ 363 (389)
T PLN00049 315 FGKGLIQSVFELSDGSGLAVTVARYQTPAGTDIDKVGITPDHPLPESLP 363 (389)
T ss_pred cCCcccceeEEeCCCCEEEEEEEEEECCCCCCcCCCCcCCCeECCCCCC
Confidence 9999999999999999999999999999999999999999999975443
No 2
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-60 Score=495.58 Aligned_cols=332 Identities=36% Similarity=0.586 Sum_probs=298.3
Q ss_pred CHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEcCC-CcEEEEeecCCChhhhcCCCCCCEEE
Q 047092 153 SADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRT-GHLVVLSCVEDSPAARAGIHEGDELI 231 (510)
Q Consensus 153 ~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~~-g~l~V~~v~~gsPA~~AGL~~GD~Il 231 (510)
+...++.+|++|++.|.||||.|+++++++.|...+.+.+.|+|+++... + +.+.|.++++|+||++|||++||.|+
T Consensus 60 ~~~l~~~ai~g~ls~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~--~~~~~~V~s~~~~~PA~kagi~~GD~I~ 137 (406)
T COG0793 60 SDKLFEGAIEGMLSSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQME--DIGGVKVVSPIDGSPAAKAGIKPGDVII 137 (406)
T ss_pred HHHHHHHHHHHHHHhcCCCcccccCHHHHHHhhhhccccccceeEEEEEe--cCCCcEEEecCCCChHHHcCCCCCCEEE
Confidence 44567789999999999999999999999999999999999999999875 4 88999999999999999999999999
Q ss_pred EECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecceeeeCCCcceeeeccCCCCCcCceEEEEe
Q 047092 232 EINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRGYIKLSPISRTIIPHRTPDGHLTKTGYVKL 311 (510)
Q Consensus 232 aING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~~~~~~~v~~~~i~~~~~~~~~~~igYi~i 311 (510)
+|||+++.++..++++++++|+.|++|+|++.|.+ .++.++++++|+.+.+.++.+.... ..+.+++||||||
T Consensus 138 ~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~----~~k~~~v~l~Re~i~l~~v~~~~~~---~~~~~~~IGyI~I 210 (406)
T COG0793 138 KIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG----GGKPFTVTLTREEIELEDVAAKEKV---EEGGKGRIGYIRI 210 (406)
T ss_pred EECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC----CCceeEEEEEEEEEeccceeeeeee---ecCCCceEEEEEe
Confidence 99999999999899999999999999999999974 3678999999999998888775211 1222346999999
Q ss_pred cccchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCc
Q 047092 312 SAFSQTAAADMANTIHELESEGAHSYILDLRNNP---VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDP 388 (510)
Q Consensus 312 ~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gp 388 (510)
++|+.++.++|++++.+|+++++++||||||+|+ +..+..++.+|++++ ++++++.|+|+..++....+...+++|
T Consensus 211 ~~F~~~~~~~~~~al~~L~~~~~~GlIlDLR~N~GG~L~~av~i~~~f~~~g-~iv~~~~r~g~~~~~~~~~~~~~~~~P 289 (406)
T COG0793 211 PSFGEGTYEDLEKALDELKKQGAKGLILDLRNNPGGLLSQAVKLAGLFLPSG-PIVSTRGRNGKVNVYFSASGEALYDGP 289 (406)
T ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEEeCCCCCccHHHHHHHHHcccCCC-cEEEEecCCCceeeccccccccCCCCC
Confidence 9999999999999999999999999999999999 889999999999996 899999999988777766666689999
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcCCCcEEEEEEEEEEcCCCCcccCCCccccEEecCC
Q 047092 389 LVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTD 468 (510)
Q Consensus 389 vvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~~~ 468 (510)
++||||++||||||+||++||+++||+|||++|||+|++|..++|++|+.+++|+++||+|+|+++|++||.|||+|+..
T Consensus 290 lvvLvn~~SASAsEI~agalqd~~ra~lVG~~TfGkg~vQ~~~~L~dg~~lklT~a~yytp~G~~i~~~GI~PDI~v~~~ 369 (406)
T COG0793 290 LVVLVNEGSASASEIFAGALQDYGRATLVGETTFGKGTVQTLRPLSDGSALKLTIAKYYTPSGRSIEGKGITPDIEVPQA 369 (406)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCcEEEecccccceEEEeeEEcCCCCeEEEEEEEEECCCCccccccCcCCCEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCchhhhhccccccCCCCCChHHHHHHHHHhhcc
Q 047092 469 MLSSPKESLLKNKSSVSSLEADSCIMVAEHELDVQE 504 (510)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~D~~l~~A~~~L~~~~ 504 (510)
..... . ...+.|++++.|++.+-.+.
T Consensus 370 ~~~~~--e--------~~~~~~~~~~~~~~~~~~~~ 395 (406)
T COG0793 370 DDEPG--E--------YAAGRDPQLEAALEALLKGL 395 (406)
T ss_pred cccch--h--------hhcccchHhhhhhhhhhhhh
Confidence 54221 1 12367999999988876554
No 3
>PRK11186 carboxy-terminal protease; Provisional
Probab=100.00 E-value=5e-56 Score=485.15 Aligned_cols=360 Identities=25% Similarity=0.414 Sum_probs=303.8
Q ss_pred cccccCCCCCCccccHHHHHHHHHHH-HHHHHcCCCCCCCCChHHHH----HHH---HHHhcCCCCHHHHHHHHHHhHhh
Q 047092 96 SLTVAFPASRAPEVNTVQRTLVEAWG-LIRETFVDPTFNHQDWDSKL----QQT---MVEIFPLKSADAAYSKISGMLST 167 (510)
Q Consensus 96 ~~~~~~~~~~~~~~~~~q~~f~e~w~-~i~~~Y~~~~~~~~dWd~~~----~~~---~~~~~~a~~~~e~~~~i~~ml~~ 167 (510)
+.++.+++++.++.. .+..++++|+ .+++.|.+..+++.||+++. ++| ++++...+..+.+..+++.|+..
T Consensus 141 ~e~~~~dr~~~~w~~-~~~el~~~W~k~vk~~~l~~~~~g~~w~~i~~~l~krY~~~l~~~~~~~~~d~~~~~i~~m~~~ 219 (667)
T PRK11186 141 NDTIELDRSKAPWPK-DEAELNELWDQRVKYDALNLKLTGKTWPEIKETLTKRYNFAIKRLTQTNSEDVFQLAMNAFARE 219 (667)
T ss_pred CceeeeccccCCCcC-CHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhC
Confidence 345677777766654 5578999999 69999999999999998876 333 33343444455577889999999
Q ss_pred cCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhc-CCCCCCEEEEEC--CE---ecCCC
Q 047092 168 LGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARA-GIHEGDELIEIN--GE---RLDGI 241 (510)
Q Consensus 168 L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaIN--G~---~v~~~ 241 (510)
+ ||||.|++|++++.|...+.+.+.|+|+.+... ++.++|.+|++||||+++ ||++||+|++|| |. ++.+|
T Consensus 220 l-DphT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~--~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~ 296 (667)
T PRK11186 220 I-DPHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMD--DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGW 296 (667)
T ss_pred C-CCCccccChHHHHHhhhccCCceeEEEEEEEEe--CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccC
Confidence 9 999999999999999888888999999999765 678999999999999998 999999999999 54 45678
Q ss_pred CHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecceeeeCC--CcceeeeccCCCCCcCceEEEEecccchhHH
Q 047092 242 DSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRGYIKLSP--ISRTIIPHRTPDGHLTKTGYVKLSAFSQTAA 319 (510)
Q Consensus 242 ~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~~~~~~~--v~~~~i~~~~~~~~~~~igYi~i~sF~~~~~ 319 (510)
..++++.+++|+.|++|+|+|.|.+. .++.++++|+|+.+.+.. +...++. .+ +++||||+|++|..+..
T Consensus 297 ~~~~vv~lirG~~Gt~V~LtV~r~~~---~~~~~~vtl~R~~i~l~~~~~k~~v~~---~~--~~kIGYI~I~sF~~~~~ 368 (667)
T PRK11186 297 RLDDVVALIKGPKGSKVRLEILPAGK---GTKTRIVTLTRDKIRLEDRAVKMSVKT---VG--GEKVGVLDIPGFYVGLT 368 (667)
T ss_pred CHHHHHHHhcCCCCCEEEEEEEeCCC---CCceEEEEEEeeeecccccceEEEEEe---cC--CCcEEEEEecccccchH
Confidence 88899999999999999999998531 367899999999886643 3333332 11 36899999999999888
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEcCC
Q 047092 320 ADMANTIHELESEGAHSYILDLRNNP---VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEG 396 (510)
Q Consensus 320 ~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn~~ 396 (510)
+++.+++.+++++++++||||||+|+ +..+..++++|++++ +++++++++|.........+...|.+|++||||++
T Consensus 369 ~d~~~~l~~l~~~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g-~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLVN~~ 447 (667)
T PRK11186 369 DDVKKQLQKLEKQNVSGIIIDLRGNGGGALTEAVSLSGLFIPSG-PVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDRY 447 (667)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCC-ceEEEecCCCceeccccCCcccccCCCEEEEeCCC
Confidence 99999999999999999999999999 678899999999987 67778888887544333445567899999999999
Q ss_pred CCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcCC--------CcEEEEEEEEEEcCCCCcccCCCccccEEecCC
Q 047092 397 SASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHD--------GSALFVTVAKYLSPALHDIDQVGITPDVQCTTD 468 (510)
Q Consensus 397 TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~d--------g~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~~~ 468 (510)
||||||+||++||+++||+|||++|||||++|..+.|++ +..+.+|+++||+|+|.++++.||.|||.|+..
T Consensus 448 SASASEIfA~alqd~~ra~vVG~~T~GKGtvQ~~~~L~~~~~~~~~~~G~lk~Tiak~y~p~G~s~q~~GV~PDi~vp~~ 527 (667)
T PRK11186 448 SASASEIFAAAMQDYGRALIVGEPTFGKGTVQQHRSLNRIYDQMLRPLGSVQYTIQKFYRINGGSTQRKGVTPDIIFPTG 527 (667)
T ss_pred CccHHHHHHHHHHhcCCEEEEeccCCCccccccccccccccccccCCCCeeEEEEeEEECCCCCcccCCCCCCCeEcCCC
Confidence 999999999999999999999999999999998877653 346999999999999999999999999999863
No 4
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=100.00 E-value=1.7e-51 Score=423.67 Aligned_cols=305 Identities=38% Similarity=0.669 Sum_probs=269.6
Q ss_pred HHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEE
Q 047092 154 ADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEI 233 (510)
Q Consensus 154 ~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaI 233 (510)
.++++.++.+|+++|+|+|++|++++++..++....+...++|+.+... +++++|..|.++|||+++||++||+|++|
T Consensus 12 ~~~~~~~l~~m~~~l~D~h~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~--~~~~~V~~V~~~spA~~aGL~~GD~I~~I 89 (334)
T TIGR00225 12 TEEIYGAIKGMLASLNDPYTRYLSPETAKSFSETTSGSLEGIGIQVGMD--DGEIVIVSPFEGSPAEKAGIKPGDKIIKI 89 (334)
T ss_pred HHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHhccCceEEEEEEEEEE--CCEEEEEEeCCCChHHHcCCCCCCEEEEE
Confidence 3578999999999999999999999999888766778889999998764 67899999999999999999999999999
Q ss_pred CCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecceeeeCCCcceeeeccCCCCCcCceEEEEecc
Q 047092 234 NGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRGYIKLSPISRTIIPHRTPDGHLTKTGYVKLSA 313 (510)
Q Consensus 234 NG~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~~~~~~~v~~~~i~~~~~~~~~~~igYi~i~s 313 (510)
||+++..++..++...+++..|+++.+++.|.+ .....++++.+..+..+++...++. ..+++||||+|++
T Consensus 90 ng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g----~~~~~~v~l~~~~~~~~~v~~~~~~-----~~~~~igYi~i~~ 160 (334)
T TIGR00225 90 NGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG----KSKPLTFTLKRDRIELQTVKASVKK-----VGGKSVGYIRISS 160 (334)
T ss_pred CCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC----CCceEEEEEEEEEeeccceEEEEEc-----CCCcEEEEEEEEe
Confidence 999999998778888888888999999999974 2456788888888777777665442 1246899999999
Q ss_pred cchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEE
Q 047092 314 FSQTAAADMANTIHELESEGAHSYILDLRNNP---VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLV 390 (510)
Q Consensus 314 F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvv 390 (510)
|.....+++.++|++|+++++++||||||+|+ +..+..++++|++++ .++++++++|....+. ..+...+++||+
T Consensus 161 f~~~~~~~~~~~l~~l~~~~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~-~~~~~~~~~g~~~~~~-~~~~~~~~~pv~ 238 (334)
T TIGR00225 161 FSEHTTEDVKKALDKLEKKNAKGYILDLRGNPGGLLQSAVDISRLFITKG-PIVQTKDRNGSKRHYK-ANGRQPYNLPLV 238 (334)
T ss_pred cccchHHHHHHHHHHHHhccCceEEEEcCCCCCCCHHHHHHHHHHhcCCC-cEEEEEcCCCcceEEe-cCCCccCCCCEE
Confidence 99998999999999998899999999999999 667889999999987 6778888888654332 345567899999
Q ss_pred EEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcCCCcEEEEEEEEEEcCCCCcccCCCccccEEecCCCC
Q 047092 391 VLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTDML 470 (510)
Q Consensus 391 VLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~~~~~ 470 (510)
||||+.|+||||+|+++||+++++++||++|+|++..+..+.|++|+.+.+++.++++|+|..+++.||.|||.|+.+..
T Consensus 239 vLvn~~TaSaaE~~a~~l~~~~~a~viG~~T~G~~~~~~~~~l~~g~~l~~~~~~~~~~~g~~~e~~Gv~PDi~v~~~~~ 318 (334)
T TIGR00225 239 VLVNRGSASASEIFAGALQDNGRATIVGEKTFGKGTVQQVRPLNDGSGIKVTIAKYYTPNGGSIHKKGIEPDIVIEQPDD 318 (334)
T ss_pred EEECCCCCcHHHHHHHHHHhCCCeEEEeeCCccCceeeeEEEcCCCCEEEEEEEEEECCCCCCccCcCcCCCEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred C
Q 047092 471 S 471 (510)
Q Consensus 471 ~ 471 (510)
.
T Consensus 319 ~ 319 (334)
T TIGR00225 319 P 319 (334)
T ss_pred h
Confidence 3
No 5
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=100.00 E-value=9.2e-41 Score=333.54 Aligned_cols=262 Identities=24% Similarity=0.303 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCCCc
Q 047092 112 VQRTLVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSDGN 191 (510)
Q Consensus 112 ~q~~f~e~w~~i~~~Y~~~~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~ 191 (510)
++++|+++|+.++++|++++++++||++++++|.+++..+++..+|+.+|++|+++|+|+|+.+.+. .+.
T Consensus 2 ~~~~fd~~w~~~~~~y~~~~~~g~dW~~~~~~y~~~~~~~~~~~e~~~~l~~ml~~L~d~H~~~~~~-~~~--------- 71 (266)
T cd07562 2 WLQMFDEAWRLVRDNFYDPDMHGVDWDAVRAEYRPLLPRAATRAELADVLNEMLGELNDSHTGVSGL-RYR--------- 71 (266)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcCCccchHHH-HHH---------
Confidence 4679999999999999999999999999999999999999999999999999999999999987640 000
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRE 271 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~ 271 (510)
+.... +.
T Consensus 72 -----------------------------------------------------~~~~~--------------~~------ 78 (266)
T cd07562 72 -----------------------------------------------------DWVES--------------NR------ 78 (266)
T ss_pred -----------------------------------------------------HHHHH--------------HH------
Confidence 00000 00
Q ss_pred CceEEEEEecceeeeCCCcceeeeccCCCCCcCceEEEEecccchhHHHHHHHHHHHHHHc-CCCEEEEEcCCCC-hhhH
Q 047092 272 SGTREVNIPRGYIKLSPISRTIIPHRTPDGHLTKTGYVKLSAFSQTAAADMANTIHELESE-GAHSYILDLRNNP-VILR 349 (510)
Q Consensus 272 g~~~~vtl~r~~~~~~~v~~~~i~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~-~~~~ 349 (510)
. ++ .... +++||||+|++|... .+.++++++..+ .+++||||||+|+ +..+
T Consensus 79 -~--------------~~------~~~~---~~~igYi~i~~~~~~---~~~~~~~~~~~~~~~~glIiDlR~N~GG~~~ 131 (266)
T cd07562 79 -E--------------YV------EELS---DGRIGYVHIPDMGDD---GFAEFLRDLLAEVDKDGLIIDVRFNGGGNVA 131 (266)
T ss_pred -H--------------HH------HHhc---CCcEEEEEeCCCChH---HHHHHHHHHHhcCCCceEEEEecCCCCCcHH
Confidence 0 00 0001 258999999999654 355555555432 3899999999999 5455
Q ss_pred HHHHHhhcCCCceEEEEecCC-CceeEEEcCCCCccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceee
Q 047092 350 LDVAQIWLDGDETLVNAVDRE-GHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQ 428 (510)
Q Consensus 350 ~~la~~fl~~~~~~~~~~~r~-g~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~ 428 (510)
..++++|... .+.+...|+ +.... . + ...|++||+||||+.|+||||+|+.+||+++++++||++|+|++..+
T Consensus 132 ~~l~~~~~~~--~~~~~~~r~~~~~~~--~-p-~~~~~~pv~vL~~~~t~SaaE~~a~~lk~~~~~~vvG~~T~G~~~~~ 205 (266)
T cd07562 132 DLLLDFLSRR--RYGYDIPRGGGKPVT--Y-P-SGRWRGPVVVLVNEGSASDAEIFAYGFRALGLGPVVGTRTAGGVIIS 205 (266)
T ss_pred HHHHHHhCCC--ceEEEccCCCCCCCC--C-c-ccccCCCEEEEECCCCCchHHHHHHHHHHcCCeeEEeeccCCceeec
Confidence 6666666554 455666665 33211 1 1 12389999999999999999999999999999999999999999988
Q ss_pred eEEEcCCCcEEEEEEEEEEcCCCCcccCCCccccEEecCCCCCCchhhhhccccccCCCCCChHHHHHHHHHhh
Q 047092 429 SVTELHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTDMLSSPKESLLKNKSSVSSLEADSCIMVAEHELDV 502 (510)
Q Consensus 429 ~~~~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~~~~~~~~~~~~~~~~~~~~~~~~D~~l~~A~~~L~~ 502 (510)
..+.||+|+.+.++...+++++|..+|+.||.|||.|+.+..+. ..+.|++|++|+++|++
T Consensus 206 ~~~~L~~g~~~~~~~~~~~~~~g~~~e~~Gi~PDi~v~~~~~~~-------------~~g~D~~L~~Al~~l~~ 266 (266)
T cd07562 206 GRYRLPDGGSLTVPEFGVYLPDGGPLENRGVAPDIEVENTPEDV-------------AAGRDPQLEAAIEELLK 266 (266)
T ss_pred CceecCCCCEEEeeceeEEcCCCCccccCCCCCCEEecCCHhHh-------------hcCCCHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999887643 23889999999999863
No 6
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=100.00 E-value=1.4e-36 Score=295.78 Aligned_cols=220 Identities=41% Similarity=0.707 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCCCceeee
Q 047092 116 LVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQGV 195 (510)
Q Consensus 116 f~e~w~~i~~~Y~~~~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~~~gl 195 (510)
|+++|+.++++|+++ ++.+|.....++.++.....+..+++.+|.+|+.+|+|+|+.+.+
T Consensus 1 ~~~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~D~hs~~~~------------------ 60 (224)
T cd06567 1 FDEAWRLLRENYYDP--HGVDWDALRDRYVDLLDAVDDRELLAGALNGMLGELGDPHSRYLT------------------ 60 (224)
T ss_pred CHHHHHHHHHHhccc--chhHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHhCCCCCceeEE------------------
Confidence 478999999999999 899999999999998888899999999999999999999999875
Q ss_pred eEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceE
Q 047092 196 GLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTR 275 (510)
Q Consensus 196 Gi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~ 275 (510)
T Consensus 61 -------------------------------------------------------------------------------- 60 (224)
T cd06567 61 -------------------------------------------------------------------------------- 60 (224)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecceeeeCCCcceeeeccCCCCCcCceEEEEecccc-hhHHHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHH
Q 047092 276 EVNIPRGYIKLSPISRTIIPHRTPDGHLTKTGYVKLSAFS-QTAAADMANTIHELESEGAHSYILDLRNNP---VILRLD 351 (510)
Q Consensus 276 ~vtl~r~~~~~~~v~~~~i~~~~~~~~~~~igYi~i~sF~-~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~ 351 (510)
||||+|++|. ....+.+.+++..+++ ++++||||||+|+ +..+..
T Consensus 61 ------------------------------igYi~i~~f~~~~~~~~~~~~~~~~~~-~~~~lIiDLR~N~GG~~~~a~~ 109 (224)
T cd06567 61 ------------------------------IGYIRIPSFSAESTAEELREALAELKK-GVKGLILDLRNNPGGLLSAAVE 109 (224)
T ss_pred ------------------------------eEEEEECccCCcchHHHHHHHHHHHHc-CCCEEEEEcCCCCCccHHHHHH
Confidence 5899999999 6677888999999887 9999999999999 457899
Q ss_pred HHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEE
Q 047092 352 VAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVT 431 (510)
Q Consensus 352 la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~ 431 (510)
++++|++++..+.....+.+.........+...+.+||+||||+.|+||||+|+++||+++++++||++|+|++..+..+
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~lk~~~~~~vvG~~T~G~~~~~~~~ 189 (224)
T cd06567 110 LASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGALQDLGRATLVGERTFGKGSVQTVF 189 (224)
T ss_pred HHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHHHHhCCCeEEEeeCCCCCCcceEEE
Confidence 99999998754444433333222333345566799999999999999999999999999999999999999999989999
Q ss_pred EcCCCcEEEEEEEEEEcCCCCcccCCCccccEEec
Q 047092 432 ELHDGSALFVTVAKYLSPALHDIDQVGITPDVQCT 466 (510)
Q Consensus 432 ~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~ 466 (510)
.|++|+.+.+|+.++++|+|..+++.||.|||.|+
T Consensus 190 ~l~~g~~~~~~~~~~~~~~g~~~~~~Gv~PDi~v~ 224 (224)
T cd06567 190 PLLDGSALKLTTAKYYTPSGRSIEGKGVEPDIEVP 224 (224)
T ss_pred EcCCCCEEEEEEEEEECCCCCCccCCccCCCEECC
Confidence 99999999999999999999999999999999874
No 7
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=100.00 E-value=7.8e-35 Score=288.31 Aligned_cols=224 Identities=24% Similarity=0.334 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhc-CCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCCCceee
Q 047092 116 LVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIF-PLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQG 194 (510)
Q Consensus 116 f~e~w~~i~~~Y~~~~~~~~dWd~~~~~~~~~~~-~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~~~g 194 (510)
|+.+|+.++++|+++..++.+|.++.+++.+++. ...+.++|+..|.+|+..|+|+|+.+..
T Consensus 2 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~D~H~~~~~----------------- 64 (250)
T cd07563 2 FEALAKLLEENYAFPEAKGIDWDALAARLRAQVYLDITSPEELAAVLTADLQELGDGHLNVSY----------------- 64 (250)
T ss_pred HHHHHHHHHHhCCChHHcccHHHHHHHHHhccccccCCCHHHHHHHHHHhhhccCCCcEEEEE-----------------
Confidence 7899999999999999999999999999999998 8999999999999999999999998863
Q ss_pred eeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCce
Q 047092 195 VGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGT 274 (510)
Q Consensus 195 lGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~ 274 (510)
T Consensus 65 -------------------------------------------------------------------------------- 64 (250)
T cd07563 65 -------------------------------------------------------------------------------- 64 (250)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecceeeeCCCcceeeeccCCCCCcCceEEEEecccchh----HHHHHHHHHHHHHHcCCCEEEEEcCCCC---hh
Q 047092 275 REVNIPRGYIKLSPISRTIIPHRTPDGHLTKTGYVKLSAFSQT----AAADMANTIHELESEGAHSYILDLRNNP---VI 347 (510)
Q Consensus 275 ~~vtl~r~~~~~~~v~~~~i~~~~~~~~~~~igYi~i~sF~~~----~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~ 347 (510)
||||+|++|... ..+.++++|+.++ +.++||||||+|+ ..
T Consensus 65 -------------------------------IgYl~i~~f~~~~~~~~~~~~~~~~~~l~--~~~~LIIDLR~N~GG~~~ 111 (250)
T cd07563 65 -------------------------------IGYLRIDSFGGFEIAAAEALLDEALDKLA--DTDALIIDLRYNGGGSDS 111 (250)
T ss_pred -------------------------------eEEEEEcccCChhhhhhHHHHHHHHHHhc--CCCeEEEEECCCCCCCHH
Confidence 489999999873 4567888888887 4599999999999 45
Q ss_pred hHHHHHHhhcCCCceEE-E-EecCCCceeE-----EEcCCCCccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccC
Q 047092 348 LRLDVAQIWLDGDETLV-N-AVDREGHTLP-----INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHK 420 (510)
Q Consensus 348 ~~~~la~~fl~~~~~~~-~-~~~r~g~~~~-----~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~ 420 (510)
.+..++++|++++..+. + ...+++.... .....+...+++|||||||+.|+||||+|+.+||+++++++||++
T Consensus 112 ~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~~a~~lk~~~~~~viGe~ 191 (250)
T cd07563 112 LVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEFAYALKQLKRATVVGET 191 (250)
T ss_pred HHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHHHHHHHHhCCCcEEEeec
Confidence 67889999996543332 2 2334333211 222334567899999999999999999999999999999999999
Q ss_pred CCCCceeeeEEEcCCCcEEEEEEEEEEcCC-CCcccCCCccccEEecCCC
Q 047092 421 TFGKGKIQSVTELHDGSALFVTVAKYLSPA-LHDIDQVGITPDVQCTTDM 469 (510)
Q Consensus 421 T~G~g~~~~~~~L~dg~~l~vt~~~~~~p~-G~~~e~~GV~PDi~V~~~~ 469 (510)
|+|++..+..+.||+|+.+.+++.++++|+ |..+|+.||.|||.|+.+.
T Consensus 192 T~G~~~~~~~~~Lp~g~~~~~~~~~~~~~~~g~~~e~~Gv~PDi~v~~~~ 241 (250)
T cd07563 192 TAGGASPVLPFPLPNGLYLTVPTSRSVDPITGTNWEGVGVPPDIEVPATP 241 (250)
T ss_pred CCCCCCCceEEEcCCCeEEEEecceeEeCCCCCcccccCcCCCeeecCCC
Confidence 999999889999999999999999999998 9999999999999998865
No 8
>smart00245 TSPc tail specific protease. tail specific protease
Probab=100.00 E-value=5.8e-33 Score=264.25 Aligned_cols=186 Identities=39% Similarity=0.627 Sum_probs=158.7
Q ss_pred eEEEEEecceeeeCCCcceeeeccCCCCCcCceEEEEecccchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHH
Q 047092 274 TREVNIPRGYIKLSPISRTIIPHRTPDGHLTKTGYVKLSAFSQTAAADMANTIHELESEGAHSYILDLRNNP---VILRL 350 (510)
Q Consensus 274 ~~~vtl~r~~~~~~~v~~~~i~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~ 350 (510)
..+++|+|+.+..+++...+.... .++||||+|.+|...+.++++++++++++.++++||||||+|+ +..+.
T Consensus 3 ~~~~~~~r~~~~~~~~~~~~~~~~-----~~~igYi~i~~f~~~~~~~~~~~~~~l~~~~~~~lIiDLR~N~GG~~~~~~ 77 (192)
T smart00245 3 ERTIALIRAKIKIETLEGNVGYLR-----FGNIGYIRIPEFSEHTSNLVEKAWKKLEKTNVEGLILDLRNNPGGLLSAAI 77 (192)
T ss_pred cEEEEEEEeEEEeeEEeEEEeecC-----CCcEEEEEEeEEChhhHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHHH
Confidence 467778888887777766544311 3589999999999988899999999999999999999999999 56778
Q ss_pred HHHHhhcCCCceEEEEecCC-CceeEEEcCCCCccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeee
Q 047092 351 DVAQIWLDGDETLVNAVDRE-GHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQS 429 (510)
Q Consensus 351 ~la~~fl~~~~~~~~~~~r~-g~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~ 429 (510)
.++++|++++ .+.+...+. +....+.. .....+.+|++||||+.|+||||+|+++||+++++++||++|+|++..+.
T Consensus 78 ~~~~~f~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~pv~vL~~~~TaSaaE~~a~~lk~~~~a~viG~~T~G~~~~~~ 155 (192)
T smart00245 78 DVSSLFLDKG-VIVYTIYRRTGELETYPA-NLGRKYSKPLVVLVNEGTASASEIFAGALKDLGRALIVGERTFGKGLVQQ 155 (192)
T ss_pred HHHHHhcCCC-cEEEEEecCCCceEEEec-CCCcccCCCEEEEECCCCeeHHHHHHHHHhhCCCEEEEecCCcCCcceee
Confidence 8999999987 455555554 54443332 23345689999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEEEEEEcCCCCcccCCCccccEEec
Q 047092 430 VTELHDGSALFVTVAKYLSPALHDIDQVGITPDVQCT 466 (510)
Q Consensus 430 ~~~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~ 466 (510)
.+.|++|+.+.+|+.++++|+|+.+|+.||+||+.|+
T Consensus 156 ~~~l~~g~~l~it~~~~~~~~g~~~e~~Gv~PDi~v~ 192 (192)
T smart00245 156 TVPLGDGSGLKLTVAKYYTPSGKSIEKKGVEPDIQVP 192 (192)
T ss_pred EEEeCCCCEEEEEEEEEECCCCCEecCCCcCCCEECc
Confidence 9999999999999999999999999999999999985
No 9
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=99.98 E-value=2.4e-31 Score=256.40 Aligned_cols=159 Identities=46% Similarity=0.779 Sum_probs=143.8
Q ss_pred eEEEEecccchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCC
Q 047092 306 TGYVKLSAFSQTAAADMANTIHELESEGAHSYILDLRNNP---VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGH 382 (510)
Q Consensus 306 igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~ 382 (510)
||||+|++|.....++|.++|++++++++++||||||+|+ +..+..++++|++++ .+++.+.++|+...+. ....
T Consensus 50 igYi~i~sf~~~~~~~~~~~l~~~~~~~~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~-~~~~~~~~~g~~~~~~-~~~~ 127 (211)
T cd07560 50 IGYIRITSFSENTAEELKKALKELKKQGMKGLILDLRNNPGGLLDEAVEIADLFLPGG-PIVSTKGRNGKREAYA-SDDG 127 (211)
T ss_pred eEEEEEcccCchhHHHHHHHHHHHHhccCceEEEEcCCCCCCCHHHHHHHHHHhcCCC-eEEEEEecCCceEEEe-cCCC
Confidence 6999999999888899999999999889999999999999 556788999999965 6777888887654433 2334
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcCCCcEEEEEEEEEEcCCCCcccCCCcccc
Q 047092 383 AITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQVGITPD 462 (510)
Q Consensus 383 ~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PD 462 (510)
..+.+|++||||+.|+||||+|+++||+++++++||++|+|++..+..+.|++|+.+.+++.++++|+|..+|+.||+||
T Consensus 128 ~~~~~pvvVLvn~~TaSaaE~~a~~lk~~~~~~vIG~~T~G~~~~~~~~~L~~g~~l~i~~~~~~~~~G~~~e~~GV~PD 207 (211)
T cd07560 128 GLYDGPLVVLVNGGSASASEIVAGALQDNGRAVLVGERTFGKGSVQTVFPLSDGSALKLTTAKYYTPSGRSIQKKGIEPD 207 (211)
T ss_pred ccCCCCEEEEeCCCcccHHHHHHHHHhhcCCEEEEecCCCCCCeeeEEEEcCCCCEEEEEEEEEECCCCCCccCCCcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 047092 463 VQCT 466 (510)
Q Consensus 463 i~V~ 466 (510)
|+|+
T Consensus 208 i~V~ 211 (211)
T cd07560 208 IEVP 211 (211)
T ss_pred EECC
Confidence 9984
No 10
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=99.97 E-value=5.5e-31 Score=260.76 Aligned_cols=167 Identities=23% Similarity=0.301 Sum_probs=144.9
Q ss_pred cCceEEEEecccchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHHHHHhhcCC---CceEEEEecCCCc----
Q 047092 303 LTKTGYVKLSAFSQTAAADMANTIHELESEGAHSYILDLRNNP---VILRLDVAQIWLDG---DETLVNAVDREGH---- 372 (510)
Q Consensus 303 ~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~la~~fl~~---~~~~~~~~~r~g~---- 372 (510)
+++||||+|++|..++.+++.+++++|+++++++||||||+|+ +..+..++++|+++ +..+.+...+++.
T Consensus 63 ~~~IGYi~i~~F~~~~~~~l~~a~~~l~~~~~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T cd07561 63 GKKVGYLVYNSFTSGYDDELNQAFAEFKAQGVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANN 142 (256)
T ss_pred CCcEEEEEECccccchHHHHHHHHHHHHHcCCCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCC
Confidence 4689999999999988899999999999999999999999999 67899999999983 4456666655542
Q ss_pred -eeEEEcC---CCCccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcC--CCcEEEEEEEEE
Q 047092 373 -TLPINMV---DGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELH--DGSALFVTVAKY 446 (510)
Q Consensus 373 -~~~~~~~---~~~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~--dg~~l~vt~~~~ 446 (510)
...+... .......+|||||||++||||||+|+++||+++++++||++|+|++..+..+.++ +|+.+.+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE~~a~~Lk~~~~a~vIGe~T~Gk~~~~~~~~l~~~~g~~l~~t~~~~ 222 (256)
T cd07561 143 EDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASELVINSLKPYMDVVLIGETTYGKNVGSLTFEDDRKHKWALQPVVFKV 222 (256)
T ss_pred ceeecccccccccCcCCcccEEEEECCCcccHHHHHHHHhhccCCEEEEeCCCCCCCccceEEEccCCCCeEEEEEEEEE
Confidence 1222221 1334567899999999999999999999999999999999999999999999998 899999999999
Q ss_pred EcCCCCcccCCCccccEEecCCC
Q 047092 447 LSPALHDIDQVGITPDVQCTTDM 469 (510)
Q Consensus 447 ~~p~G~~~e~~GV~PDi~V~~~~ 469 (510)
++|+|..+++.||.||++|+.+.
T Consensus 223 ~~~~G~~~~~~Gi~PDi~v~~~~ 245 (256)
T cd07561 223 VNADGQGDYSNGLTPDIEVNEDS 245 (256)
T ss_pred ECCCCCCccCCCcCCceEeCccc
Confidence 99999999999999999998764
No 11
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=99.96 E-value=4.7e-28 Score=224.67 Aligned_cols=160 Identities=30% Similarity=0.486 Sum_probs=122.1
Q ss_pred ceEEEEecccch--hHHHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHHHHHhhcCCCceEEEEecCCCcee----E
Q 047092 305 KTGYVKLSAFSQ--TAAADMANTIHELESEGAHSYILDLRNNP---VILRLDVAQIWLDGDETLVNAVDREGHTL----P 375 (510)
Q Consensus 305 ~igYi~i~sF~~--~~~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~la~~fl~~~~~~~~~~~r~g~~~----~ 375 (510)
+||||+|++|.. ...+++.+++++++++++++||||||+|+ ...+..++++|++++ ...+...+.+... .
T Consensus 1 ~i~yl~i~sf~~~~~~~~~~~~~~~~~~~~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (169)
T PF03572_consen 1 NIGYLRIPSFSENKSFDEELDEFLDKLKSKDTDGLIIDLRGNGGGSDEYAIELLSYLIPKP-IIFYYRDRIGSNKKWVST 79 (169)
T ss_dssp EEEEEEES-BCCGHHHHHHHHHHHHHHHHTTSSEEEEE-TTB--BSHHHHHHHHHCHSSSS-EEEEEEEEEEEETTCCHE
T ss_pred CEEEEEeCcccCccccHHHHHHHHHHHHHCCCCEEEEEcccCCCcchHHHHHHHhcccCCC-cEEEEecccccccccccC
Confidence 589999999965 67889999999998889999999999999 556788999999975 3333222111100 1
Q ss_pred EEcCCCCccCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcCCCcEEEEEEEEEEcCCCCccc
Q 047092 376 INMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDID 455 (510)
Q Consensus 376 ~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~dg~~l~vt~~~~~~p~G~~~e 455 (510)
.........+.+|++||+|+.|+||||+|+.+||+++++++||++|+|.+..+..+.|++|+.+.++...++.++|..+|
T Consensus 80 ~~~~~~~~~~~~~v~vL~~~~t~Saae~fa~~lk~~~~~~ivGe~T~G~~~~~~~~~l~~g~~~~i~~~~~~~~~g~~~~ 159 (169)
T PF03572_consen 80 IKWSTPKNRFNGPVYVLTDENTASAAEIFASALKDNKRATIVGEPTAGAGGGQTGFSLPSGSILSIPTSRYYNPDGQKIE 159 (169)
T ss_dssp EEECSSTT-SSSEEEEEE-TTBBTHHHHHHHHHHHTTSEEEEES--SB-EEEEEEEE-TTSEEEEEEEEEEEETTSBBTT
T ss_pred CCCccccccCCCCEEEEeCCCCCChhHHHHHHHHhcCCCeEEeecCCCCCEEeeEEEECCCcEEEeEeEEEEeCCCCEEc
Confidence 11111156799999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred CCCccccEEe
Q 047092 456 QVGITPDVQC 465 (510)
Q Consensus 456 ~~GV~PDi~V 465 (510)
+.||.|||+|
T Consensus 160 ~~Gi~PDi~V 169 (169)
T PF03572_consen 160 GIGIEPDIEV 169 (169)
T ss_dssp TTS---SEE-
T ss_pred CCcEEccEEC
Confidence 9999999987
No 12
>PF14684 Tricorn_C1: Tricorn protease C1 domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=99.41 E-value=1.1e-13 Score=109.88 Aligned_cols=68 Identities=29% Similarity=0.520 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeC
Q 047092 110 NTVQRTLVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIIS 177 (510)
Q Consensus 110 ~~~q~~f~e~w~~i~~~Y~~~~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~ 177 (510)
.+.+++|+++|+.++++|++++++|+||++++++|.|++..+++..+|+.+|.+|+++|+|+|+++.+
T Consensus 2 ~E~~~~F~~~W~~~~~~f~d~~~~gvDW~~~~~~Y~p~v~~~~~~~el~~vl~eMl~eL~~~H~~~~~ 69 (70)
T PF14684_consen 2 AEWRQMFDEAWRLVRENFYDPDMHGVDWDAVYDRYRPLVPAAKTRDELYDVLNEMLGELNDSHTYVYG 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHGGGGG--SHHHHHHHHHHHHHTT--S---EE-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCccCccC
Confidence 35789999999999999999999999999999999999999999999999999999999999999864
No 13
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.29 E-value=3.2e-11 Score=98.66 Aligned_cols=79 Identities=34% Similarity=0.572 Sum_probs=63.7
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHH-cCCCCCeEEEEEEeCCCCCCCC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKL-RGRAGTPVTVKVHSGKDVGRES 272 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll-~g~~G~~V~l~v~r~~~~~~~g 272 (510)
++|+.+......++++|..|.++|||+++||++||+|++|||+++.+ ..++...+ ...+|++++|++.|+ +
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~------g 73 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRD------G 73 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEET------T
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEEC------C
Confidence 57888776522358999999999999999999999999999999977 46777666 688999999999998 5
Q ss_pred ceEEEEEe
Q 047092 273 GTREVNIP 280 (510)
Q Consensus 273 ~~~~vtl~ 280 (510)
+.++++++
T Consensus 74 ~~~~~~v~ 81 (82)
T PF13180_consen 74 EELTVEVT 81 (82)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 66766653
No 14
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.18 E-value=3.6e-10 Score=92.63 Aligned_cols=83 Identities=41% Similarity=0.712 Sum_probs=69.9
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRE 271 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~ 271 (510)
+.++|+.+..+ +++++|..+.++|||+++||++||+|++|||+++.+++.+++...+....|..+.+++.|++
T Consensus 1 ~~~lG~~~~~~--~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~----- 73 (85)
T cd00988 1 FGGIGLELKYD--DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGD----- 73 (85)
T ss_pred CeEEEEEEEEc--CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCC-----
Confidence 35788888654 57799999999999999999999999999999999987678888887777899999999872
Q ss_pred CceEEEEEec
Q 047092 272 SGTREVNIPR 281 (510)
Q Consensus 272 g~~~~vtl~r 281 (510)
++.+++++++
T Consensus 74 ~~~~~~~~~~ 83 (85)
T cd00988 74 GEPREVTLTR 83 (85)
T ss_pred CCEEEEEEEE
Confidence 4667777654
No 15
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.99 E-value=2.3e-09 Score=84.53 Aligned_cols=68 Identities=37% Similarity=0.573 Sum_probs=59.1
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEE
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v 262 (510)
++|+.+... .+++++|..|.++|||+.+||++||+|++|||+++.++..+++.+.++...|++++|++
T Consensus 2 ~~G~~~~~~-~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGG-TEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecC-CCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 467777643 12379999999999999999999999999999999999888999999987888988876
No 16
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.93 E-value=4.4e-09 Score=85.64 Aligned_cols=71 Identities=31% Similarity=0.517 Sum_probs=60.7
Q ss_pred eeeeeEEEEEEcCC--CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 192 LQGVGLFISVEPRT--GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 192 ~~glGi~l~~~~~~--g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
..++||.+...... ..++|.++.++|||+++||++||+|++|||+++.+++.+++..+++...+ .++|+|+
T Consensus 9 ~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 9 NGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp TSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred CCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence 35678888765333 38999999999999999999999999999999999999999999987655 8888764
No 17
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.81 E-value=4.1e-08 Score=79.11 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=58.6
Q ss_pred eeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCce
Q 047092 195 VGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGT 274 (510)
Q Consensus 195 lGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~ 274 (510)
+|+..... ...++|..+.++|||+++||++||+|++|||+++.++ +++...+....+..+.+++.|+ ++.
T Consensus 3 ~~~~~g~~--~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~------~~~ 72 (79)
T cd00989 3 LGFVPGGP--PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERN------GET 72 (79)
T ss_pred eeEeccCC--ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEEC------CEE
Confidence 55555432 3458899999999999999999999999999999985 5777777655678899999886 345
Q ss_pred EEEEE
Q 047092 275 REVNI 279 (510)
Q Consensus 275 ~~vtl 279 (510)
+++++
T Consensus 73 ~~~~l 77 (79)
T cd00989 73 ITLTL 77 (79)
T ss_pred EEEEe
Confidence 55554
No 18
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.80 E-value=5e-08 Score=79.23 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=56.9
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
..+++|..|.++|||+++||++||+|++|||+++..+ +++...+.. ..|+.+.+++.|+ ++.++++++
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~------g~~~~~~~~ 77 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPS------TTKLTNVST 77 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEEC------CEEEEEEEE
Confidence 4568899999999999999999999999999999974 577777765 3588999999997 466676664
No 19
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.80 E-value=4.2e-08 Score=79.39 Aligned_cols=74 Identities=35% Similarity=0.535 Sum_probs=56.7
Q ss_pred eeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCce
Q 047092 195 VGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGT 274 (510)
Q Consensus 195 lGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~ 274 (510)
+|+.+... +++++|..|.++|||+++||++||+|++|||+++.++ .++...+ ..|+.+.+++.|+ ++.
T Consensus 3 ~G~~~~~~--~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~--~~~l~~~--~~~~~v~l~v~r~------g~~ 70 (80)
T cd00990 3 LGLTLDKE--EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDAL--QDRLKEY--QAGDPVELTVFRD------DRL 70 (80)
T ss_pred ccEEEEcc--CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHH--HHHHHhc--CCCCEEEEEEEEC------CEE
Confidence 46666543 5679999999999999999999999999999999873 2333322 4678999999987 455
Q ss_pred EEEEEe
Q 047092 275 REVNIP 280 (510)
Q Consensus 275 ~~vtl~ 280 (510)
++++++
T Consensus 71 ~~~~v~ 76 (80)
T cd00990 71 IEVPLT 76 (80)
T ss_pred EEEEEE
Confidence 555553
No 20
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.70 E-value=1.1e-07 Score=78.51 Aligned_cols=76 Identities=29% Similarity=0.425 Sum_probs=56.0
Q ss_pred eeeEEEEEEcCCCcEEEEeecCC--------ChhhhcC--CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 194 GVGLFISVEPRTGHLVVLSCVED--------SPAARAG--IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~g--------sPA~~AG--L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
.+|..+..+ ++++.|..+++| ||-.+.| ++.||.|++|||+++..- .++..+|.++.|+.|.|+|.
T Consensus 2 ~LGAd~~~~--~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~ 77 (88)
T PF14685_consen 2 LLGADFSYD--NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVN 77 (88)
T ss_dssp B-SEEEEEE--TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE
T ss_pred ccceEEEEc--CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEe
Confidence 367888776 789999999997 7777877 669999999999999984 37889999999999999999
Q ss_pred eCCCCCCCCceEEEE
Q 047092 264 SGKDVGRESGTREVN 278 (510)
Q Consensus 264 r~~~~~~~g~~~~vt 278 (510)
+.+ +..++++
T Consensus 78 ~~~-----~~~R~v~ 87 (88)
T PF14685_consen 78 RKP-----GGARTVV 87 (88)
T ss_dssp -ST-----T-EEEEE
T ss_pred cCC-----CCceEEE
Confidence 974 3566664
No 21
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.61 E-value=3e-07 Score=74.63 Aligned_cols=72 Identities=36% Similarity=0.553 Sum_probs=57.9
Q ss_pred eeeeEEEEEEcCC-CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRT-GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~-g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..+|+.+...... .+++|..|.++|||+++||++||+|++|||+++..++..+....+... +..++|++.|+
T Consensus 12 ~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~-~~~~~l~i~r~ 84 (85)
T smart00228 12 GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKVTLTVLRG 84 (85)
T ss_pred CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence 4567777543111 579999999999999999999999999999999998777777766653 56888888875
No 22
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.57 E-value=3.1e-07 Score=74.35 Aligned_cols=69 Identities=29% Similarity=0.511 Sum_probs=55.0
Q ss_pred eeeeEEEEEEcC-CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEE
Q 047092 193 QGVGLFISVEPR-TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 193 ~glGi~l~~~~~-~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v 262 (510)
.++|+.+..... ...++|..+.++|||+++||++||+|++|||+++..++.+++...++...+ .++|++
T Consensus 12 ~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~-~v~l~v 81 (82)
T cd00992 12 GGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EVTLTV 81 (82)
T ss_pred CCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCC-eEEEEE
Confidence 456777753210 146999999999999999999999999999999998888899998876444 666654
No 23
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.56 E-value=5.1e-07 Score=73.08 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=53.6
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
.+++|..|.++|||+. ||++||+|++|||.++..+ +++...+.. ..|+.+.+++.|+ ++.++++++
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~------g~~~~~~v~ 74 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKRE------EKELPEDLI 74 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEEC------CEEEEEEEE
Confidence 4588999999999986 8999999999999999874 467777764 5788999999987 455555554
No 24
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.50 E-value=8.2e-07 Score=73.21 Aligned_cols=59 Identities=32% Similarity=0.488 Sum_probs=49.6
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeC
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSG 265 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~ 265 (510)
.++++|..|.++|||+++||++||+|++|||+++.++ .++.+.+... .|..+.+++.|+
T Consensus 23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~ 82 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRG 82 (90)
T ss_pred CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEEC
Confidence 3468899999999999999999999999999999885 3566666543 478999999887
No 25
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.32 E-value=1.6e-06 Score=91.45 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=90.4
Q ss_pred cccHHHHHHHHHHHHHHHHcCCC--CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCC-ceEeeChHHHhhh
Q 047092 108 EVNTVQRTLVEAWGLIRETFVDP--TFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDP-FTRIISPKEYQSF 184 (510)
Q Consensus 108 ~~~~~q~~f~e~w~~i~~~Y~~~--~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~-Ht~~~~~~~~~~~ 184 (510)
+-...+++|+++++.|+..+-.. .+...+|..+++. + +..++...|++.+.+-.++ ...++.+ +..-
T Consensus 373 ~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~----~----tg~dl~~f~~~~i~~~~~~~l~~~l~~--~gL~ 442 (558)
T COG3975 373 ERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLEN----V----TGLDLATFFDEYIEGTEPPPLNPLLER--FGLT 442 (558)
T ss_pred hcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHh----h----ccccHHHHHHHHhhcCCCCChhhhhhh--cceE
Confidence 34445678999999999888762 2333333333322 2 2234444555555544333 1111111 1100
Q ss_pred hccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 185 RIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 185 ~~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.........++|+.+..+ +|+.+|+.|.+||||++|||.+||+|++|||.+- ++.+.+.+..+++.+.+
T Consensus 443 ~~~~~~~~~~LGl~v~~~--~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~---------~l~~~~~~d~i~v~~~~ 511 (558)
T COG3975 443 FTPKPREAYYLGLKVKSE--GGHEKITFVFPGGPAYKAGLSPGDKIVAINGISD---------QLDRYKVNDKIQVHVFR 511 (558)
T ss_pred EEecCCCCcccceEeccc--CCeeEEEecCCCChhHhccCCCccEEEEEcCccc---------cccccccccceEEEEcc
Confidence 011112245789888754 7889999999999999999999999999999811 22334678899999988
Q ss_pred CCCCCCCCceEEEEEe
Q 047092 265 GKDVGRESGTREVNIP 280 (510)
Q Consensus 265 ~~~~~~~g~~~~vtl~ 280 (510)
. ++.+++.++
T Consensus 512 ~------~~L~e~~v~ 521 (558)
T COG3975 512 E------GRLREFLVK 521 (558)
T ss_pred C------CceEEeecc
Confidence 7 466666543
No 26
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.17 E-value=1.1e-05 Score=86.34 Aligned_cols=67 Identities=19% Similarity=0.399 Sum_probs=55.2
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
.+++|..|.++|||+++||++||+|++|||+++..+ .++...+. ...|+.+++++.|+ ++.++++++
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~ 324 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRK------GKEKTITVT 324 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEE
Confidence 568999999999999999999999999999999984 45655554 36789999999997 456665554
No 27
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.16 E-value=1.7e-05 Score=78.98 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=53.9
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEE
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNI 279 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl 279 (510)
.++.|..+.+++||+++||++||+|++|||+++.++ +++.+.+.. ..++.++|+|.|+ |+.+++++
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~------G~~~~i~v 257 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERD------GQREDIYV 257 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEEC------CEEEEEEE
Confidence 468889999999999999999999999999999985 455555543 4678999999998 45666554
No 28
>PRK10139 serine endoprotease; Provisional
Probab=98.14 E-value=1e-05 Score=87.11 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=56.9
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
.+++|..|.++|||+++||++||+|++|||+++..+ +++...+.. ..|+++.+++.|+ |+.++++++
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~------G~~~~l~v~ 357 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRN------GKPLEVEVT 357 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEE
Confidence 478999999999999999999999999999999985 467666654 6788999999997 566666665
No 29
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.13 E-value=8.7e-06 Score=86.83 Aligned_cols=67 Identities=27% Similarity=0.455 Sum_probs=57.6
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
..+|.+|.++|||+++||++||+|++|||+++.++ +++.+.+....++++.+++.|+ |+.++++++.
T Consensus 204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~------g~~~~~~v~~ 270 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERN------GETLSISLTP 270 (420)
T ss_pred CcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEEC------CEEEEEEEEE
Confidence 57889999999999999999999999999999885 5787888777788899999997 4666666655
No 30
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.10 E-value=1.2e-05 Score=83.75 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=56.0
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
.+++|..|.++|||+++||++||+|++|||+++..+ +++.+.+.. ..|+++.+++.|+ ++.++++++
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~ 345 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQ------GKQLELPVT 345 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEE
Confidence 468899999999999999999999999999999984 466666653 6788999999997 466666654
No 31
>PRK10898 serine endoprotease; Provisional
Probab=98.09 E-value=1.6e-05 Score=82.94 Aligned_cols=68 Identities=24% Similarity=0.298 Sum_probs=55.7
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
.+++|..|.++|||+++||++||+|++|||+++..+ +++...+.. ..|+.+.|++.|. ++.++++++.
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~l 347 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRD------DKQLTLQVTI 347 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEEe
Confidence 578999999999999999999999999999999884 355555543 6889999999997 4566665543
No 32
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.05 E-value=3.8e-05 Score=69.12 Aligned_cols=84 Identities=27% Similarity=0.362 Sum_probs=58.5
Q ss_pred eeeeEEEEEEc----CCCcEEEEeecCCChhhhcCCCC-CCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCC
Q 047092 193 QGVGLFISVEP----RTGHLVVLSCVEDSPAARAGIHE-GDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKD 267 (510)
Q Consensus 193 ~glGi~l~~~~----~~g~l~V~~v~~gsPA~~AGL~~-GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~ 267 (510)
.-+|+.++... ....+.|.+|.|+|||++|||++ .|.|+.+|+..+.+. +++.+++....+.++.|.|.+..
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vyns~- 102 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVYNSK- 102 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEEETT-
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEEECC-
Confidence 44566655442 24578899999999999999998 699999999888864 57888888889999999998864
Q ss_pred CCCCCceEEEEEecc
Q 047092 268 VGRESGTREVNIPRG 282 (510)
Q Consensus 268 ~~~~g~~~~vtl~r~ 282 (510)
....++|+|++.
T Consensus 103 ---~~~vR~V~i~P~ 114 (138)
T PF04495_consen 103 ---TDSVREVTITPS 114 (138)
T ss_dssp ---TTCEEEEEE---
T ss_pred ---CCeEEEEEEEcC
Confidence 256778887653
No 33
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.05 E-value=1.6e-05 Score=85.52 Aligned_cols=68 Identities=18% Similarity=0.423 Sum_probs=57.4
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
..+|..|.+||||++|||++||+|++|||+++.++ +++.+.+....|+.+.+++.|+ |+.++++++..
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~------g~~~~~~v~~~ 289 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQ------GSPLSLTLTPD 289 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEEC------CEEEEEEEEee
Confidence 47899999999999999999999999999999885 5777777767788999999997 46666666543
No 34
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.01 E-value=1.2e-05 Score=86.55 Aligned_cols=57 Identities=30% Similarity=0.252 Sum_probs=47.6
Q ss_pred EEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHH-cCCCCCeEEEEEEeCC
Q 047092 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKL-RGRAGTPVTVKVHSGK 266 (510)
Q Consensus 208 l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll-~g~~G~~V~l~v~r~~ 266 (510)
.+|..|.++|||++||||+||+|++|||+++.+++ ++...+ ....|+++++++.|++
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~--~l~~~v~~~~~g~~v~v~v~R~g 185 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWD--AVRLALVSKIGDESTTITVAPFG 185 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhhccCCceEEEEEeCC
Confidence 46889999999999999999999999999999963 554333 3456788999999974
No 35
>PRK10942 serine endoprotease; Provisional
Probab=97.97 E-value=3.5e-05 Score=83.38 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=55.3
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
.+++|..|.++|||+++||++||+|++|||+++..+ +++...+. ...|+++.+++.|+ |+.++++++
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~------G~~~~v~v~ 378 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRD------GKPVNVNVE 378 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEEC------CeEEEEEEE
Confidence 578999999999999999999999999999999985 46665553 35788999999997 456666554
No 36
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=97.94 E-value=1.4e-05 Score=86.25 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=60.2
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
--|+||.+........--|-.|++||||++.| |+.||.|++|||++|.+++..+++++++ ..|-+|+|+|.-..
T Consensus 764 NeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIK-daGlsVtLtIip~e 838 (984)
T KOG3209|consen 764 NEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIK-DAGLSVTLTIIPPE 838 (984)
T ss_pred CCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHH-hcCceEEEEEcChh
Confidence 35788877543211222378899999999998 9999999999999999999999999997 57899999998654
No 37
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=97.86 E-value=0.00027 Score=63.07 Aligned_cols=93 Identities=20% Similarity=0.409 Sum_probs=66.7
Q ss_pred HHHHhHhhcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEc-CCCcEEEEeecCCChhhhc-CCCCCCEEEEECCEe
Q 047092 160 KISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEP-RTGHLVVLSCVEDSPAARA-GIHEGDELIEINGER 237 (510)
Q Consensus 160 ~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~ 237 (510)
.+..+.+.-+..|-++.. .. ..-.|+||.+.-.. .+..++|+.++||+-|++- ||++||.+++|||.+
T Consensus 78 tvaafaaseghahprvve---lp-------ktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvs 147 (207)
T KOG3550|consen 78 TVAAFAASEGHAHPRVVE---LP-------KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 147 (207)
T ss_pred HHHHHHHhccCCCCceee---cC-------ccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeeccee
Confidence 344555555566767652 11 12346788764221 3457999999999999986 599999999999999
Q ss_pred cCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 238 LDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 238 v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
+++-..+.++.+|+...| +|+|.|+
T Consensus 148 vege~hekavellkaa~g-svklvvr 172 (207)
T KOG3550|consen 148 VEGEHHEKAVELLKAAVG-SVKLVVR 172 (207)
T ss_pred ecchhhHHHHHHHHHhcC-cEEEEEe
Confidence 999888889999986554 4566554
No 38
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.85 E-value=0.00012 Score=76.63 Aligned_cols=76 Identities=26% Similarity=0.502 Sum_probs=57.7
Q ss_pred eeeEEEEEEcCCCcEEEEeec--------CCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 194 GVGLFISVEPRTGHLVVLSCV--------EDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~--------~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.+|+.+.. +| +.|.... .+|||++|||++||+|++|||+++..+ +++.+.+....|..+.+++.|+
T Consensus 97 ~iGI~l~t---~G-VlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~ 170 (402)
T TIGR02860 97 SIGVKLNT---KG-VLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERG 170 (402)
T ss_pred EEEEEEec---CE-EEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEEC
Confidence 47777753 34 4443332 258999999999999999999999985 5777777766688999999997
Q ss_pred CCCCCCCceEEEEEec
Q 047092 266 KDVGRESGTREVNIPR 281 (510)
Q Consensus 266 ~~~~~~g~~~~vtl~r 281 (510)
++..++++++
T Consensus 171 ------Ge~~tv~V~P 180 (402)
T TIGR02860 171 ------GKIIETVIKP 180 (402)
T ss_pred ------CEEEEEEEEE
Confidence 4666776653
No 39
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.83 E-value=6.5e-05 Score=80.40 Aligned_cols=59 Identities=29% Similarity=0.443 Sum_probs=51.7
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCC
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~ 266 (510)
.+++|..|.++|||+++||++||+|++|||+++.+ .+++.+.+.. +.|..++|++.|++
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGG 421 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 46899999999999999999999999999999988 4577777765 46889999999973
No 40
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.76 E-value=4.8e-05 Score=80.09 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=49.4
Q ss_pred EEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 210 VLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 210 V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
|..|.+||||+++||++||+|++|||+++.+|. ++...+. +..+.+++.+.+ |+.+++++.++
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~--D~~~~l~---~e~l~L~V~~rd-----Ge~~~l~Ie~~ 64 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLI--DYQFLCA---DEELELEVLDAN-----GESHQIEIEKD 64 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHhc---CCcEEEEEEcCC-----CeEEEEEEecC
Confidence 467899999999999999999999999999864 5555553 456888886322 57778888764
No 41
>PRK10139 serine endoprotease; Provisional
Probab=97.74 E-value=0.00011 Score=79.00 Aligned_cols=58 Identities=24% Similarity=0.453 Sum_probs=49.9
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.+++|..|.++|||+++||++||+|++|||+++..+ +++.+.+.... ..+.|++.|++
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g 447 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGN 447 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCC-CeEEEEEEECC
Confidence 358899999999999999999999999999999985 57777776543 68899999973
No 42
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=97.63 E-value=5.6e-05 Score=62.70 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=41.2
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR 251 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~ 251 (510)
+.+++|++|.+||||+.|||+.+|.|+.+||....-...+.++++++
T Consensus 58 D~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~ 104 (124)
T KOG3553|consen 58 DKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRIT 104 (124)
T ss_pred CccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhh
Confidence 56899999999999999999999999999999887776677666654
No 43
>PRK10942 serine endoprotease; Provisional
Probab=97.62 E-value=0.00022 Score=77.19 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=50.1
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++|..|.++|||+++||++||+|++|||++|.++ +++.+.+... +..+.|+|+|.+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~-~~~v~l~V~R~g 465 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSK-PSVLALNIQRGD 465 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhC-CCeEEEEEEECC
Confidence 358899999999999999999999999999999994 5777777653 478999999973
No 44
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00079 Score=63.46 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=54.8
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCC-HHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGID-SEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~-~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
..+|..|.|+|||++|||+.||+|+.+....-.+.. ...+....+...+..+.+++.|. |....+.|++.
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~------g~~v~L~ltP~ 210 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIRE------GQKVVLSLTPK 210 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecC------CCEEEEEeCcc
Confidence 468899999999999999999999999876655543 34455555667888999999997 46666766654
No 45
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.52 E-value=0.00094 Score=71.34 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=46.8
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
+.+|..|.++|||++|||++||+|++|||+++.++ .++.+.+.... .++.+++.|++
T Consensus 129 g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~--~dl~~~ia~~~-~~v~~~I~r~g 185 (420)
T TIGR00054 129 GPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGF--KDVRQQIADIA-GEPMVEILAER 185 (420)
T ss_pred CceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhc-ccceEEEEEec
Confidence 45688999999999999999999999999999985 46655554444 67888898873
No 46
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0012 Score=68.75 Aligned_cols=67 Identities=31% Similarity=0.539 Sum_probs=54.6
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
.+++|..+.++|||+++|+++||+|+++||+++... .++...+. ...|..+.+++.|+ |+.++++++
T Consensus 270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~------g~~~~~~v~ 337 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRG------GKERELAVT 337 (347)
T ss_pred CceEEEecCCCChHHHcCCCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEEC------CEEEEEEEE
Confidence 348999999999999999999999999999999984 35544443 45799999999998 466666554
No 47
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=97.15 E-value=0.0011 Score=72.27 Aligned_cols=75 Identities=28% Similarity=0.429 Sum_probs=63.6
Q ss_pred ceeeeeEEEEEEc---CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeC
Q 047092 191 NLQGVGLFISVEP---RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSG 265 (510)
Q Consensus 191 ~~~glGi~l~~~~---~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~ 265 (510)
.+.|+||.+.-.+ .|..+.|.+|++++||++.| |..||+|+.|||.-+-+.+..+++++++ .+.|..|.|++.|.
T Consensus 353 g~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRg 432 (984)
T KOG3209|consen 353 GYMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRG 432 (984)
T ss_pred cccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecC
Confidence 3468898874321 24578999999999999998 9999999999999999999899999887 56799999999885
No 48
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=96.85 E-value=0.0018 Score=65.24 Aligned_cols=73 Identities=27% Similarity=0.402 Sum_probs=61.7
Q ss_pred ceeeeeEEEEEEc-CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 191 NLQGVGLFISVEP-RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 191 ~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
..+|+|+.+.-.. .+=.++|..++++-.|+..| |-.||.|+.|||+-|.....++++++||+ .|+.|+|+|..
T Consensus 64 ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN-AGdeVtlTV~~ 138 (505)
T KOG3549|consen 64 KVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN-AGDEVTLTVKH 138 (505)
T ss_pred ecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh-cCCEEEEEeHh
Confidence 4678999885321 23468899999999999999 88999999999999999999999999995 78999999853
No 49
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=96.81 E-value=0.002 Score=68.84 Aligned_cols=69 Identities=29% Similarity=0.422 Sum_probs=55.5
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHH-cCCCCCeEEEEEE
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKL-RGRAGTPVTVKVH 263 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll-~g~~G~~V~l~v~ 263 (510)
.+|+++.-. .+=+++|..|.+|+||++.||+.||.|+.||..+..++.-++++.+| .-+.|..|+|.-.
T Consensus 418 SvGLRLAGG-NDVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ 487 (1027)
T KOG3580|consen 418 SVGLRLAGG-NDVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQ 487 (1027)
T ss_pred eeeeEeccC-CceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhh
Confidence 467777532 23478999999999999999999999999999999998877776654 4577888887543
No 50
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.69 E-value=0.0071 Score=60.75 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=48.1
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCC
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~ 266 (510)
+++|..+.+++|+. .-|+.||.|++|||+++.. .+++...+.. +.|++|++++.|.+
T Consensus 131 gvyv~~v~~~~~~~-gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 131 GVYVLSVIDNSPFK-GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eEEEEEccCCcchh-ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEecc
Confidence 57888999999885 3499999999999999988 5677777764 67999999999864
No 51
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.65 E-value=0.014 Score=58.35 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=43.2
Q ss_pred eecCCChh---hhcCCCCCCEEEEECCEecCCCCH-HHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEE
Q 047092 212 SCVEDSPA---ARAGIHEGDELIEINGERLDGIDS-EAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNI 279 (510)
Q Consensus 212 ~v~~gsPA---~~AGL~~GD~IlaING~~v~~~~~-~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl 279 (510)
.+.||..+ .++|||+||++++|||.++.+... .++++.| ...++++|+|.|+ |+..++.+
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L--~~~tei~ltVeRd------Gq~~~i~i 273 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQL--PSMDSIQLTVLRK------GARHDISI 273 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHh--ccCCeEEEEEEEC------CEEEEEEE
Confidence 44466443 568999999999999999987421 1344444 3568999999998 56666654
No 52
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.64 E-value=0.0039 Score=69.90 Aligned_cols=73 Identities=33% Similarity=0.479 Sum_probs=59.4
Q ss_pred eeeeEEEEEEcC----CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPR----TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~----~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.|.|+.+-.... .=+++|..|++|++|+..| |+.||.+++|||.++-+++.+.++.+|. ..|..|.|.|...+
T Consensus 943 nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt-rtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 943 NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT-RTGNVVHLEVAKQG 1020 (1629)
T ss_pred CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh-ccCCeEEEehhhhh
Confidence 577776643211 1268999999999999888 9999999999999999999888888775 46889999987654
No 53
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=96.59 E-value=0.0049 Score=61.12 Aligned_cols=57 Identities=25% Similarity=0.432 Sum_probs=47.6
Q ss_pred cEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 207 HLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
-++|..|+.++||++.| |+.||+|++|||++|.+-..-+++++++-. -.+|++.+..
T Consensus 31 ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~-~~eV~IhyNK 88 (429)
T KOG3651|consen 31 CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS-LNEVKIHYNK 88 (429)
T ss_pred eEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh-ccceEEEehh
Confidence 47899999999999998 999999999999999998877888888743 3456666543
No 54
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=96.58 E-value=0.0029 Score=70.75 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=54.8
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..|+||.- +..++|..|.+|||+. ..|++||.|++|||+++.+...+.+++++|... +.|.|+|-++
T Consensus 66 ~lGFgfva-----grPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV~qP 132 (1298)
T KOG3552|consen 66 SLGFGFVA-----GRPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTVCQP 132 (1298)
T ss_pred cccceeec-----CCceEEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEEecc
Confidence 45666643 4578899999999986 349999999999999999998899999998543 6788888775
No 55
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=96.47 E-value=0.0061 Score=65.36 Aligned_cols=57 Identities=21% Similarity=0.418 Sum_probs=46.6
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++|..|++|+||+ .-||.||.|+-|||.+.++....=+++.|+ +.|....|+|+|+
T Consensus 41 SiViSDVlpGGPAe-G~LQenDrvvMVNGvsMenv~haFAvQqLr-ksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 41 SIVISDVLPGGPAE-GLLQENDRVVMVNGVSMENVLHAFAVQQLR-KSGKVAAITVKRP 97 (1027)
T ss_pred eEEEeeccCCCCcc-cccccCCeEEEEcCcchhhhHHHHHHHHHH-hhccceeEEeccc
Confidence 68899999999997 239999999999999998865544566676 4667778889886
No 56
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=96.26 E-value=0.0046 Score=63.23 Aligned_cols=72 Identities=25% Similarity=0.449 Sum_probs=57.5
Q ss_pred ceeeeeEEEEEEcCCC-cEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 191 NLQGVGLFISVEPRTG-HLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 191 ~~~glGi~l~~~~~~g-~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
..+|+|+.+.-..++. .+.|+.+++|-.|++++ |..||.|++|||..+.+-+.+++++.|+ ..|..|-+.|+
T Consensus 94 d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK-raGkeV~levK 167 (506)
T KOG3551|consen 94 DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK-RAGKEVLLEVK 167 (506)
T ss_pred cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH-hhCceeeeeee
Confidence 3578999886432222 46788999999999988 9999999999999999998999998887 46777776553
No 57
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=96.20 E-value=0.015 Score=63.58 Aligned_cols=69 Identities=26% Similarity=0.418 Sum_probs=55.9
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
-|-++|..|+++|||++ -|++||.+++||+.-+.+ ..++.+.|....|+.++|+|.|. |+..+++++-+
T Consensus 302 tgmLvV~~vL~~gpa~k-~Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rg------gqelel~vtvq 370 (955)
T KOG1421|consen 302 TGMLVVETVLPEGPAEK-KLEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRG------GQELELTVTVQ 370 (955)
T ss_pred ceeEEEEEeccCCchhh-ccCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeC------CEEEEEEEEec
Confidence 35688999999999987 499999999999887766 34666777666899999999998 56777776544
No 58
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.97 E-value=0.0073 Score=65.56 Aligned_cols=59 Identities=31% Similarity=0.501 Sum_probs=50.8
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
+.+++|..|.||+.|+++||++||.|+.|||+..+.++...+..+|++ ++.++|++..+
T Consensus 561 GfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrn--nthLtltvKtN 619 (1283)
T KOG3542|consen 561 GFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRN--NTHLTLTVKTN 619 (1283)
T ss_pred cceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcC--CceEEEEEecc
Confidence 457899999999999999999999999999999999988888889975 45666776554
No 59
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=95.94 E-value=0.021 Score=62.26 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=52.0
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEE
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v 262 (510)
...+|+.+... .+.-+.|-.|.+++||.++.+++||++++|||+||... ..+.+.++...|+-..|.+
T Consensus 385 s~~ig~vf~~~-~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~~ 452 (1051)
T KOG3532|consen 385 SSPIGLVFDKN-TNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLVE 452 (1051)
T ss_pred cCceeEEEecC-CceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEEe
Confidence 34688888754 23446688999999999999999999999999999883 4667777765555444443
No 60
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=95.62 E-value=0.024 Score=60.74 Aligned_cols=71 Identities=31% Similarity=0.474 Sum_probs=58.3
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..+|+.+..+ .++.++|..++.|+-+++.| |+.||+|..|||.++.+...+++..+|++..| ++++++.-.
T Consensus 134 eplG~Tik~~-e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G-~itfkiiP~ 205 (542)
T KOG0609|consen 134 EPLGATIRVE-EDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG-SITFKIIPS 205 (542)
T ss_pred CccceEEEec-cCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC-cEEEEEccc
Confidence 3467777654 24479999999999999999 89999999999999999989999999987774 566666543
No 61
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=95.38 E-value=0.02 Score=62.17 Aligned_cols=83 Identities=28% Similarity=0.417 Sum_probs=61.8
Q ss_pred eeeEEEEEEcCCC----cEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCC-CeEEEEEEeCCC
Q 047092 194 GVGLFISVEPRTG----HLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAG-TPVTVKVHSGKD 267 (510)
Q Consensus 194 glGi~l~~~~~~g----~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G-~~V~l~v~r~~~ 267 (510)
.+|+.+-... =| -++|.+...++||++.| |..||.|++|||.++-++.+......+++..+ +.|+|+|.+-
T Consensus 658 iLGVViVESG-WGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~c-- 734 (829)
T KOG3605|consen 658 ILGVVIVESG-WGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSC-- 734 (829)
T ss_pred eeeEEEEecC-ccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecC--
Confidence 4677664321 11 23566778899999999 99999999999999999988888888887655 4688988775
Q ss_pred CCCCCceEEEEEecce
Q 047092 268 VGRESGTREVNIPRGY 283 (510)
Q Consensus 268 ~~~~g~~~~vtl~r~~ 283 (510)
-...+|.|.|-.
T Consensus 735 ----pPV~~V~I~RPd 746 (829)
T KOG3605|consen 735 ----PPVTTVLIRRPD 746 (829)
T ss_pred ----CCceEEEeeccc
Confidence 245677776643
No 62
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=94.83 E-value=0.037 Score=58.58 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=54.7
Q ss_pred eeEEEEE---EcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCC--CeEEEEEEe
Q 047092 195 VGLFISV---EPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAG--TPVTVKVHS 264 (510)
Q Consensus 195 lGi~l~~---~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G--~~V~l~v~r 264 (510)
||+.+.- ...||+++|.++.+|+.-+..| |.+||.|+.||....++++.++++..||.... -+++|+|..
T Consensus 263 LGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 263 LGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred ceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEee
Confidence 5665532 1257899999999999877777 99999999999999999999999998874221 246777754
No 63
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.2 Score=53.73 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=50.8
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCC-CCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRA-GTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~-G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
.++|..|++|+++...++++||.|++|||+++.+. .++..+++... +++|.+..++. .+..++.+..
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~------~e~~tl~Il~ 466 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRS------AEDATLEILP 466 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecC------ccceeEEecc
Confidence 36778999999999999999999999999999994 57888876533 35666666654 2445555443
No 64
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=93.49 E-value=0.23 Score=48.95 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=47.4
Q ss_pred CcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 206 GHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
-+++|...++|+-|+..| |...|+|+.|||+.|.+.+.+++..+|-.. ...+.+||+-.
T Consensus 194 pGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN-shNLIiTVkPA 253 (358)
T KOG3606|consen 194 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN-SHNLIITVKPA 253 (358)
T ss_pred CceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc-ccceEEEeccc
Confidence 368999999999999999 788999999999999999999988877532 23445566543
No 65
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=92.99 E-value=0.29 Score=47.48 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=36.3
Q ss_pred CChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCC
Q 047092 216 DSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266 (510)
Q Consensus 216 gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~ 266 (510)
++--++.|||+||+.++||+..+.+ .+++..+|+. ..-++..+||+|++
T Consensus 217 ~slF~~sglq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv~R~G 266 (275)
T COG3031 217 GSLFYKSGLQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTVIRRG 266 (275)
T ss_pred cchhhhhcCCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEEEecC
Confidence 3445678999999999999999887 4555555442 23357889999983
No 66
>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]
Probab=92.72 E-value=0.15 Score=58.95 Aligned_cols=54 Identities=33% Similarity=0.462 Sum_probs=44.6
Q ss_pred EEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEE
Q 047092 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 208 l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v 262 (510)
-.|..|.+||||..+|+++||.|+.|||.++.++...+++++|- ..|..|.+.+
T Consensus 660 h~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll-~~gn~v~~~t 713 (1205)
T KOG0606|consen 660 HSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLL-KSGNKVTLRT 713 (1205)
T ss_pred eeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHH-hcCCeeEEEe
Confidence 35678899999999999999999999999999999999998875 2345555443
No 67
>PF12812 PDZ_1: PDZ-like domain
Probab=92.38 E-value=0.33 Score=39.25 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=34.0
Q ss_pred EEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC
Q 047092 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG 252 (510)
Q Consensus 208 l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g 252 (510)
.+++..-.|+++...|+.+|.+|.+|||+++.+ .+++.+.++.
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ 74 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPD--LDDFIKVVKK 74 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCcC--HHHHHHHHHh
Confidence 444566778888876799999999999999999 5677766653
No 68
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=0.56 Score=49.21 Aligned_cols=69 Identities=28% Similarity=0.343 Sum_probs=54.8
Q ss_pred cEEEEeecCCChhhhcCCC-CCCEEEEE-CCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 207 HLVVLSCVEDSPAARAGIH-EGDELIEI-NGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~-~GD~IlaI-NG~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
-+-|.+|.+.|||++|||+ -+|.|+-+ |.+--+ .+++..++....++.+.|-|+.-+ ....++|+++..
T Consensus 110 vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~---~eDl~~lIeshe~kpLklyVYN~D----~d~~ReVti~pn 180 (462)
T KOG3834|consen 110 VWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE---EEDLFTLIESHEGKPLKLYVYNHD----TDSCREVTITPN 180 (462)
T ss_pred eeeeeecCCCCHHHhcccccccceEecchhhhccc---hHHHHHHHHhccCCCcceeEeecC----CCccceEEeecc
Confidence 5668899999999999998 78999988 654322 468888998889999999988765 256788888754
No 69
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=91.45 E-value=0.16 Score=55.50 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=41.3
Q ss_pred EEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCC
Q 047092 209 VVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAG 255 (510)
Q Consensus 209 ~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G 255 (510)
+|-+.+.|+-|++.|++.|-.|+.|||++|-....+.++++|....|
T Consensus 759 iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 759 IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 45678899999999999999999999999999888899999875544
No 70
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=0.38 Score=47.32 Aligned_cols=71 Identities=27% Similarity=0.321 Sum_probs=55.9
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSG 265 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~ 265 (510)
.+|+.+..+ .-|+.+|..+.+||--++.- ++.||.|-+|||+.+-++...+++.+|+. +.|.+.+|.+..+
T Consensus 138 alGlTITDN-G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLieP 210 (334)
T KOG3938|consen 138 ALGLTITDN-GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEP 210 (334)
T ss_pred ccceEEeeC-CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeecc
Confidence 467777643 35788899999999877654 99999999999999999999999998874 4466666666544
No 71
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=90.81 E-value=0.38 Score=52.67 Aligned_cols=61 Identities=31% Similarity=0.472 Sum_probs=51.3
Q ss_pred ceeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcC
Q 047092 191 NLQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRG 252 (510)
Q Consensus 191 ~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g 252 (510)
...|+|+.+... .+|..+|+.+.++|||+..+ |..||+|+.||++.+-+|....+++.|+-
T Consensus 211 p~eglg~~I~Ss-ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~ 272 (638)
T KOG1738|consen 211 PSEGLGLYIDSS-YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRE 272 (638)
T ss_pred cccCCceEEeee-cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhccc
Confidence 345788888655 47888999999999999876 99999999999999999988777776653
No 72
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.89 E-value=1.3 Score=46.55 Aligned_cols=70 Identities=31% Similarity=0.391 Sum_probs=51.3
Q ss_pred cEEEEeecCCChhhhcCCCC-CCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 207 HLVVLSCVEDSPAARAGIHE-GDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~-GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
++-|..|.++|||.+|||.+ -|-|++|||..+..- .+.+..+++-.. .+|++++..... .+++.+.|++.
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~s-ekVkltv~n~kt----~~~R~v~I~ps 86 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANS-EKVKLTVYNSKT----QEVRIVEIVPS 86 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcc-cceEEEEEeccc----ceeEEEEeccc
Confidence 46678899999999999887 569999999999874 345566666443 349999987642 34566666553
No 73
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=84.94 E-value=2.5 Score=44.13 Aligned_cols=52 Identities=29% Similarity=0.410 Sum_probs=41.3
Q ss_pred EeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCe---EEEEEEe
Q 047092 211 LSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTP---VTVKVHS 264 (510)
Q Consensus 211 ~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~---V~l~v~r 264 (510)
..+..+|+|..+|++.||.|+++|+.++..+. ++...+....+.. +.+.+.|
T Consensus 134 ~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 134 GEVAPKSAAALAGLRPGDRIVAVDGEKVASWD--DVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eecCCCCHHHHcCCCCCCEEEeECCEEccCHH--HHHHHHHhccCCcccceEEEEEe
Confidence 36788999999999999999999999999963 5555554445555 7788887
No 74
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=83.71 E-value=1.8 Score=40.78 Aligned_cols=39 Identities=33% Similarity=0.426 Sum_probs=33.7
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEEC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEIN 234 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaIN 234 (510)
..|+.+..+ ++++.|..|..||||+++|+.-|++|++|-
T Consensus 112 ~~GL~l~~e--~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEE--GGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred hCCCEEEee--CCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 357777654 889999999999999999999999999884
No 75
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=81.46 E-value=9 Score=35.99 Aligned_cols=66 Identities=29% Similarity=0.388 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEcC
Q 047092 318 AAADMANTIHELESEGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNE 395 (510)
Q Consensus 318 ~~~~l~~~l~~l~~~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn~ 395 (510)
....+.++|++..+++++.|||+|-.-+ +..+..+...+... ..|+++.+++
T Consensus 14 ~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~~~~I~~~l~~~--------------------------~~pvva~V~g 67 (178)
T cd07021 14 LAAFVERALKEAKEEGADAVVLDIDTPGGRVDSALEIVDLILNS--------------------------PIPTIAYVND 67 (178)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHHHHHHHHHHHhC--------------------------CCCEEEEECC
Confidence 4567889999988888999999996555 56666666555432 2689999999
Q ss_pred CCCcHHHHHHHHHh
Q 047092 396 GSASASEILAGALH 409 (510)
Q Consensus 396 ~TaSaaE~~a~~Lk 409 (510)
..+|++-+++.+-.
T Consensus 68 ~AaSaG~~ia~a~d 81 (178)
T cd07021 68 RAASAGALIALAAD 81 (178)
T ss_pred chHHHHHHHHHhCC
Confidence 99999999998764
No 76
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=73.93 E-value=23 Score=33.37 Aligned_cols=67 Identities=27% Similarity=0.297 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEc-
Q 047092 318 AAADMANTIHELESEGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVN- 394 (510)
Q Consensus 318 ~~~~l~~~l~~l~~~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn- 394 (510)
....+.+.|+.+.+.+++.++|++-..+ +..+..+...+.. ..+|++..++
T Consensus 14 ~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~~i~~~l~~--------------------------~~kPvia~v~~ 67 (187)
T cd07020 14 TADYLERAIDQAEEGGADALIIELDTPGGLLDSTREIVQAILA--------------------------SPVPVVVYVYP 67 (187)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHHHHHHHHHh--------------------------CCCCEEEEEec
Confidence 4578889999888878999999998887 5556555543321 2478999998
Q ss_pred --CCCCcHHHHHHHHHhc
Q 047092 395 --EGSASASEILAGALHD 410 (510)
Q Consensus 395 --~~TaSaaE~~a~~Lk~ 410 (510)
+..+|++=.++.+-..
T Consensus 68 ~~G~AasgG~~iala~D~ 85 (187)
T cd07020 68 SGARAASAGTYILLAAHI 85 (187)
T ss_pred CCCCchhHHHHHHHhCCc
Confidence 8999999888876543
No 77
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=60.79 E-value=50 Score=30.86 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEc
Q 047092 317 TAAADMANTIHELESEGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVN 394 (510)
Q Consensus 317 ~~~~~l~~~l~~l~~~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn 394 (510)
.....+.+.+++..+.+++.++|+|-..| +..+..+...+.. .+.|+++.++
T Consensus 13 ~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~~~I~~~i~~--------------------------~~~pvv~~v~ 66 (172)
T cd07015 13 YTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAAGNIVQRIQQ--------------------------SKIPVIIYVY 66 (172)
T ss_pred hHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHHHHHHHHHHh--------------------------cCcCEEEEEe
Confidence 34567888898887778999999999888 5556655544321 2368999998
Q ss_pred ---CCCCcHHHHHHHHHhc
Q 047092 395 ---EGSASASEILAGALHD 410 (510)
Q Consensus 395 ---~~TaSaaE~~a~~Lk~ 410 (510)
+..+|++-+++.+-..
T Consensus 67 p~g~~AaSag~~I~~a~~~ 85 (172)
T cd07015 67 PPGASAASAGTYIALGSHL 85 (172)
T ss_pred cCCCeehhHHHHHHHhcCc
Confidence 8889999998887554
No 78
>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=19 Score=37.75 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=34.1
Q ss_pred CCcEEEEeecCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHHc
Q 047092 205 TGHLVVLSCVEDSPAAR-AGIHEGDELIEINGERLDGIDSEAAALKLR 251 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~-AGL~~GD~IlaING~~v~~~~~~~~~~ll~ 251 (510)
+.++.|++|-..||+.- -||.+||.|+++||-++.. .++..+.++
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~ 264 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLA 264 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHH
Confidence 44677888888888642 3899999999999999988 345555544
No 79
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=43.10 E-value=93 Score=35.20 Aligned_cols=56 Identities=20% Similarity=0.109 Sum_probs=44.6
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHS 264 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r 264 (510)
.+++|++.-.||||.+ +|+.--.|++|||..+.+ .++++..++.. .++-|+++...
T Consensus 862 ~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~--lddf~~~~~~ipdnsyv~v~~mt 918 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNT--LDDFYHMLLEIPDNSYVQVKQMT 918 (955)
T ss_pred CceEEeecccCChhHh-hcchheeEEEecccccCc--HHHHHHHHhhCCCCceEEEEEec
Confidence 5788999999999998 999999999999998887 56888777654 34556665543
No 80
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=42.15 E-value=84 Score=28.32 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEc
Q 047092 318 AAADMANTIHELESE-GAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVN 394 (510)
Q Consensus 318 ~~~~l~~~l~~l~~~-~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn 394 (510)
...++.+.|+.+.+. .+++++|++...+ +..+..+...+.. +++|++..++
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~--------------------------~~kpvva~~~ 65 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQA--------------------------SRKPVIAYVG 65 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHH--------------------------hCCCEEEEEC
Confidence 457788888888764 4899999997655 3334444432211 2378999999
Q ss_pred CCCCcHHHHHHHHHh
Q 047092 395 EGSASASEILAGALH 409 (510)
Q Consensus 395 ~~TaSaaE~~a~~Lk 409 (510)
+..+|++=.++.+-.
T Consensus 66 g~~~s~g~~la~~~d 80 (161)
T cd00394 66 GQAASAGYYIATAAN 80 (161)
T ss_pred ChhHHHHHHHHhCCC
Confidence 999988876666443
No 81
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=41.53 E-value=1.5e+02 Score=31.89 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=51.2
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceE-EEEec
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELESEGAHSYILDLRNNP--VILRLDVAQIWLDGDETL-VNAVD 368 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~-~~~~~ 368 (510)
+++.++.+.. ....+++.+.+.++..++.+...+||+|--=+ +..+.++.+.+...+.++ .|...
T Consensus 26 ~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p 94 (436)
T COG1030 26 KKVYVIEIDGAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVP 94 (436)
T ss_pred CeEEEEEecCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 4677777776 44457888999999999999999999997766 788899999999887664 34333
No 82
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.94 E-value=1.5e+02 Score=24.95 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=31.3
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHHcC---------CCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELESEG---------AHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~---------~~~LIlDLR~N~ 345 (510)
+++..+++.. +.....+.+.+.+.++...+ .+.+|||+++-.
T Consensus 8 ~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~ 59 (117)
T PF01740_consen 8 DGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVS 59 (117)
T ss_dssp TTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTES
T ss_pred CCEEEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCC
Confidence 4577777765 34456778888888776555 589999999988
No 83
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=36.45 E-value=2.3e+02 Score=23.43 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=29.3
Q ss_pred ceEEEEecc-cchhHHHHHHHHH-HHHHHcCCCEEEEEcCCCC
Q 047092 305 KTGYVKLSA-FSQTAAADMANTI-HELESEGAHSYILDLRNNP 345 (510)
Q Consensus 305 ~igYi~i~s-F~~~~~~~l~~~l-~~l~~~~~~~LIlDLR~N~ 345 (510)
++..+++.. +.....+++.+.+ ..+.+.+.+.+|||+++=+
T Consensus 10 ~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~ 52 (109)
T cd07041 10 GVLVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVP 52 (109)
T ss_pred CEEEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCc
Confidence 466666664 5555677888766 4454467899999999876
No 84
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=36.19 E-value=2.4e+02 Score=23.14 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=29.3
Q ss_pred ceEEEEecc-cchhHHHHHHHHHHHHH-HcCCCEEEEEcCCCC
Q 047092 305 KTGYVKLSA-FSQTAAADMANTIHELE-SEGAHSYILDLRNNP 345 (510)
Q Consensus 305 ~igYi~i~s-F~~~~~~~l~~~l~~l~-~~~~~~LIlDLR~N~ 345 (510)
++..+++.. +.....+.+.+.+.++- ..+.+.+||||++-.
T Consensus 8 ~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~ 50 (106)
T TIGR02886 8 DVLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVT 50 (106)
T ss_pred CEEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCc
Confidence 466666654 33345677888887653 357899999999988
No 85
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=32.17 E-value=2.2e+02 Score=27.05 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHH-cCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEc
Q 047092 318 AAADMANTIHELES-EGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVN 394 (510)
Q Consensus 318 ~~~~l~~~l~~l~~-~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn 394 (510)
+..++.++|+++.+ ..++++||++-.-+ +..+.++...+.. + . ..+|++..++
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~-----------------~--~-----~~kpvia~v~ 69 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKK-----------------L--K-----AKKPVVASMG 69 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHH-----------------h--c-----CCCCEEEEEC
Confidence 35788889998874 57999999986544 2222333221110 0 0 1378999999
Q ss_pred CCCCcHHHHHHHHH
Q 047092 395 EGSASASEILAGAL 408 (510)
Q Consensus 395 ~~TaSaaE~~a~~L 408 (510)
+.++|++=.++.+-
T Consensus 70 g~a~s~g~~la~aa 83 (207)
T TIGR00706 70 GVAASGGYYIAMAA 83 (207)
T ss_pred CccchHHHHHHhcC
Confidence 99998877777654
No 86
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=31.36 E-value=24 Score=35.97 Aligned_cols=46 Identities=33% Similarity=0.477 Sum_probs=35.3
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLD 239 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~ 239 (510)
...+|++-.. .++-+-|.+|.+.+||+++|.-.||.|+-||+-++.
T Consensus 51 ~~~~gi~hts--Vn~~l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 51 KTRLGIFHTS--VNCLLEVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hhhhccccch--hhhhhhheeccccChhHhhccccceeEEeecCCcHH
Confidence 3445664432 356677888999999999999999999999976653
No 87
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=29.96 E-value=1.6e+02 Score=24.26 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=28.5
Q ss_pred ceEEEEecc-cchhHHHHHHHHHHHHHH-cCCCEEEEEcCCCC
Q 047092 305 KTGYVKLSA-FSQTAAADMANTIHELES-EGAHSYILDLRNNP 345 (510)
Q Consensus 305 ~igYi~i~s-F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~ 345 (510)
++.+|++.. +.......+.+.+.++.. .+.+.+|||+.+-.
T Consensus 12 ~~~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~ 54 (108)
T TIGR00377 12 GVVIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLE 54 (108)
T ss_pred CEEEEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCe
Confidence 456666653 223345678888877655 47899999999988
No 88
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=28.51 E-value=2.8e+02 Score=26.34 Aligned_cols=79 Identities=9% Similarity=0.057 Sum_probs=54.1
Q ss_pred ceEEEEecccchhHHHHHHHHHHHHHH-cCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCC
Q 047092 305 KTGYVKLSAFSQTAAADMANTIHELES-EGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDG 381 (510)
Q Consensus 305 ~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~ 381 (510)
++-||. ..........+.+.|..++. .+.+.++|.+-..| +..+..+...+..
T Consensus 24 r~I~i~-g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~----------------------- 79 (197)
T PRK14512 24 RSIVIA-GEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRF----------------------- 79 (197)
T ss_pred cEEEEC-CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHh-----------------------
Confidence 455553 11223456678888887776 45788999998887 6666666654432
Q ss_pred CccCCCcEEEEEcCCCCcHHHHHHHHHhc
Q 047092 382 HAITHDPLVVLVNEGSASASEILAGALHD 410 (510)
Q Consensus 382 ~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~ 410 (510)
.+.|+++++++..+|+|-+++.+-..
T Consensus 80 ---~~~~V~t~v~G~AaSaaslIl~ag~~ 105 (197)
T PRK14512 80 ---VKPKVFTIGVGLVASAAALIFLAAKK 105 (197)
T ss_pred ---CCCCEEEEEEeeeHhHHHHHHhcCCc
Confidence 23478889999999999988877644
No 89
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=26.66 E-value=32 Score=35.12 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=17.2
Q ss_pred cC-CCCCCEEEEECCEecCCC
Q 047092 222 AG-IHEGDELIEINGERLDGI 241 (510)
Q Consensus 222 AG-L~~GD~IlaING~~v~~~ 241 (510)
-| |++||+++.|-|.|.+.+
T Consensus 101 fg~LRpgDell~i~G~PYDTL 121 (416)
T COG4100 101 FGILRPGDELLYITGSPYDTL 121 (416)
T ss_pred HhccCCCCeEEEecCCcchhH
Confidence 35 999999999999998773
No 90
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=26.35 E-value=1.3e+02 Score=23.49 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.1
Q ss_pred cchHHHHHHHHHHH
Q 047092 61 NRKDFIESIAKGFV 74 (510)
Q Consensus 61 ~~~~~~~~~~~~~~ 74 (510)
.|.++++.+|...+
T Consensus 10 sRR~Flk~lg~~aa 23 (66)
T TIGR02811 10 SRRDLLKGLGVGAA 23 (66)
T ss_pred cHHHHHHHHHHHHH
Confidence 48999999887554
No 91
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=23.15 E-value=45 Score=40.21 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=38.2
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHH
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKL 250 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll 250 (510)
+-+++..|.+.+||..+-||-||.++.||..++.++...+++..+
T Consensus 143 eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~ 187 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMI 187 (1973)
T ss_pred hhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhh
Confidence 346778999999999999999999999999999998766665544
No 92
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=20.91 E-value=4.2e+02 Score=20.86 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=26.3
Q ss_pred ceEEEEecc-cchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 047092 305 KTGYVKLSA-FSQTAAADMANTIHELESEGAHSYILDLRNNP 345 (510)
Q Consensus 305 ~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~ 345 (510)
++..+++.. +.....+.+.+.+......+.+.+|||+++-.
T Consensus 8 ~~~ii~l~G~l~~~~~~~~~~~~~~~~~~~~~~viid~~~v~ 49 (99)
T cd07043 8 GVLVVRLSGELDAATAPELREALEELLAEGPRRLVLDLSGVT 49 (99)
T ss_pred CEEEEEEeceecccchHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 344455433 22233566777777665555799999999988
No 93
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=20.52 E-value=1.7e+02 Score=28.05 Aligned_cols=44 Identities=36% Similarity=0.646 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeCh
Q 047092 114 RTLVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIISP 178 (510)
Q Consensus 114 ~~f~e~w~~i~~~Y~~~~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~ 178 (510)
..+.++-.+++++|.++.- .....+.++++|+.. .|||++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~~~~~~~~ 49 (211)
T cd07560 6 KKLEEVLELIKKNYVDPVD--------------------DEKLIEGAIKGMLSS-LDPYSRYLTP 49 (211)
T ss_pred HHHHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHHHHc-CCCcceeeCc
Confidence 3566667778888887621 012244678999999 7999999876
No 94
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=20.40 E-value=4.7e+02 Score=21.24 Aligned_cols=41 Identities=7% Similarity=0.218 Sum_probs=28.8
Q ss_pred ceEEEEecc-cchhHHHHHHHHHHH-HHHcCCCEEEEEcCCCC
Q 047092 305 KTGYVKLSA-FSQTAAADMANTIHE-LESEGAHSYILDLRNNP 345 (510)
Q Consensus 305 ~igYi~i~s-F~~~~~~~l~~~l~~-l~~~~~~~LIlDLR~N~ 345 (510)
++.++++.. +...+.+.|.+.+.+ +.+.+.+.+|||+++-.
T Consensus 8 ~v~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~ 50 (100)
T cd06844 8 DYWVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDISALE 50 (100)
T ss_pred CEEEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEECCCCc
Confidence 467777765 444556778887754 33346899999999877
No 95
>KOG4371 consensus Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain [Signal transduction mechanisms]
Probab=20.30 E-value=1e+02 Score=36.54 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 188 SDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 188 ~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.+.+-+.+|..+... .++..+....-.+.--.-.|+.||.++.+||+-+...-..+++..++| .|+.|.|.+.|.
T Consensus 1153 ~~r~~~~l~~~~a~~--~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~-~~~~~~~~~~r~ 1227 (1332)
T KOG4371|consen 1153 LDRNEGSLGVQIASL--SGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRG-GGDRVVLGVQRP 1227 (1332)
T ss_pred CCCCCCCCCceeccC--ccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhc-cCceEEEEeecC
No 96
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=20.14 E-value=4.6e+02 Score=21.00 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=27.3
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHHcC--CCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELESEG--AHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~--~~~LIlDLR~N~ 345 (510)
+++.++++.. +.....+.+.+.+.+..... .+.+|||+++-.
T Consensus 8 ~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~~~~~~lilD~~~v~ 52 (107)
T cd07042 8 PGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVN 52 (107)
T ss_pred CCEEEEEecCceEeehHHHHHHHHHHHhccCCCceEEEEECCCCc
Confidence 4566676655 22234566777776655433 589999999977
Done!