Query 047092
Match_columns 510
No_of_seqs 308 out of 2776
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 100.0 3E-62 1E-66 512.1 47.1 354 110-471 3-368 (388)
2 1k32_A Tricorn protease; prote 100.0 8.6E-51 2.9E-55 473.2 30.1 357 108-505 656-1034(1045)
3 3k50_A Putative S41 protease; 100.0 1.4E-47 4.9E-52 400.6 31.0 348 117-506 17-403 (403)
4 3dor_A Protein CT_858, CPAF; m 100.0 1.4E-32 4.8E-37 292.8 34.7 359 112-504 7-562 (583)
5 1j7x_A IRBP, interphotorecepto 100.0 1E-33 3.6E-38 286.3 23.8 180 304-505 106-300 (302)
6 2kom_A Partitioning defective 99.4 5.9E-13 2E-17 116.0 7.2 100 166-265 14-119 (121)
7 2koj_A Partitioning defective 99.3 1.4E-12 4.7E-17 111.6 7.6 95 172-266 1-101 (111)
8 2byg_A Channel associated prot 99.3 8.4E-12 2.9E-16 108.0 7.8 95 168-265 12-113 (117)
9 2edz_A PDZ domain-containing p 99.2 2.5E-12 8.4E-17 110.7 3.5 94 160-266 4-97 (114)
10 2r4h_A Membrane-associated gua 99.2 1.8E-11 6.2E-16 105.0 8.3 98 166-266 10-109 (112)
11 1qau_A Neuronal nitric oxide s 99.2 1.2E-10 4.2E-15 99.4 9.9 86 190-281 10-96 (112)
12 1wfv_A Membrane associated gua 99.1 1.5E-11 5E-16 103.5 3.4 93 173-266 2-96 (103)
13 1wg6_A Hypothetical protein (r 99.1 2E-11 6.9E-16 107.1 4.2 98 169-266 10-122 (127)
14 2he4_A Na(+)/H(+) exchange reg 99.1 2.9E-10 9.8E-15 93.2 10.5 73 193-266 15-87 (90)
15 2dm8_A INAD-like protein; PDZ 99.1 4.2E-11 1.4E-15 103.1 5.2 94 170-266 7-103 (116)
16 2vz5_A TAX1-binding protein 3; 99.1 1.7E-10 5.7E-15 102.9 9.0 76 191-266 36-124 (139)
17 2jre_A C60-1 PDZ domain peptid 99.1 6.7E-11 2.3E-15 100.5 6.1 93 172-266 3-104 (108)
18 1r6j_A Syntenin 1; PDZ, membra 99.1 2.3E-10 7.9E-15 92.6 8.7 66 192-264 15-80 (82)
19 1v6b_A Harmonin isoform A1; st 99.1 5.6E-11 1.9E-15 102.9 5.4 97 169-266 3-107 (118)
20 2w4f_A Protein LAP4; structura 99.1 2.4E-10 8.4E-15 94.9 8.4 76 190-266 11-93 (97)
21 3b76_A E3 ubiquitin-protein li 99.1 1.7E-10 5.8E-15 100.0 7.6 95 169-265 13-112 (118)
22 1x5q_A LAP4 protein; PDZ domai 99.1 1.8E-10 6.1E-15 98.2 7.6 79 187-266 20-105 (110)
23 2qkv_A Inactivation-NO-after-p 99.1 1.6E-10 5.4E-15 96.2 7.0 86 178-266 4-91 (96)
24 2v90_A PDZ domain-containing p 99.1 2.5E-10 8.6E-15 94.7 8.2 73 193-266 14-89 (96)
25 2pkt_A PDZ and LIM domain prot 99.1 4E-10 1.4E-14 92.5 9.2 73 193-266 13-86 (91)
26 2yuy_A RHO GTPase activating p 99.1 2.4E-11 8.1E-16 106.5 1.6 96 167-266 24-120 (126)
27 2db5_A INAD-like protein; PDZ 99.1 3E-10 1E-14 99.6 8.5 74 192-266 36-115 (128)
28 2iwq_A Multiple PDZ domain pro 99.1 2.2E-10 7.6E-15 99.9 7.5 95 167-266 14-119 (123)
29 1g9o_A NHE-RF; PDZ domain, com 99.1 6.2E-10 2.1E-14 91.3 9.8 73 193-265 14-86 (91)
30 2jxo_A Ezrin-radixin-moesin-bi 99.0 4.1E-10 1.4E-14 93.8 8.1 90 170-265 3-92 (98)
31 3l4f_D SH3 and multiple ankyri 99.0 3.7E-10 1.3E-14 99.8 8.1 96 167-266 16-124 (132)
32 1kwa_A Hcask/LIN-2 protein; PD 99.0 4E-10 1.4E-14 92.3 7.7 72 193-266 13-85 (88)
33 2uzc_A Human pdlim5, PDZ and L 99.0 1.1E-09 3.8E-14 89.2 10.4 73 193-266 13-86 (88)
34 1m5z_A GRIP, AMPA receptor int 99.0 6E-10 2.1E-14 91.4 8.8 72 193-265 19-90 (91)
35 2i04_A Membrane-associated gua 99.0 1E-09 3.6E-14 88.8 10.0 72 193-264 11-85 (85)
36 2dmz_A INAD-like protein; PDZ 99.0 1.7E-10 5.7E-15 101.3 5.6 92 191-284 25-123 (129)
37 3sfj_A TAX1-binding protein 3; 99.0 1E-09 3.6E-14 92.3 10.3 75 191-265 17-104 (104)
38 2eaq_A LIM domain only protein 99.0 4.8E-10 1.6E-14 91.8 7.9 72 192-265 16-88 (90)
39 2djt_A Unnamed protein product 99.0 2.1E-10 7.2E-15 96.7 5.9 76 190-266 19-98 (104)
40 2vsp_A PDZ domain-containing p 99.0 1.7E-10 5.9E-15 94.8 5.2 72 194-266 15-86 (91)
41 2pa1_A PDZ and LIM domain prot 99.0 1.2E-09 4.1E-14 88.9 9.9 73 193-266 12-85 (87)
42 2iwn_A Multiple PDZ domain pro 99.0 3.1E-10 1.1E-14 94.0 6.4 76 190-266 12-93 (97)
43 1b8q_A Protein (neuronal nitri 99.0 2.7E-10 9.3E-15 99.7 6.3 87 189-281 16-103 (127)
44 2jil_A GRIP1 protein, glutamat 99.0 7.5E-10 2.6E-14 92.0 8.5 73 193-266 14-92 (97)
45 1n7e_A AMPA receptor interacti 99.0 1.1E-09 3.8E-14 91.1 9.5 73 193-266 16-90 (97)
46 1uep_A Membrane associated gua 99.0 1.1E-10 3.8E-15 98.4 3.3 77 190-266 17-96 (103)
47 2iwo_A Multiple PDZ domain pro 99.0 3E-10 1E-14 98.6 6.0 74 192-266 35-113 (120)
48 2dls_A PDZ-rhogef, RHO guanine 99.0 1.4E-09 4.6E-14 89.9 9.6 69 193-266 19-87 (93)
49 4amh_A Disks large homolog 1; 99.0 3.6E-09 1.2E-13 89.6 12.5 86 192-281 12-104 (106)
50 2q3g_A PDZ and LIM domain prot 99.0 1.4E-09 4.7E-14 88.9 9.5 73 193-266 13-86 (89)
51 3bpu_A Membrane-associated gua 99.0 1E-09 3.4E-14 89.5 8.6 72 193-266 14-86 (88)
52 2d90_A PDZ domain containing p 99.0 3.3E-10 1.1E-14 95.1 5.9 74 192-266 16-89 (102)
53 1i16_A Interleukin 16, LCF; cy 99.0 1.5E-10 5.2E-15 101.9 3.8 76 191-266 38-118 (130)
54 3o46_A Maguk P55 subfamily mem 99.0 1.4E-09 4.9E-14 89.6 9.2 71 194-265 16-87 (93)
55 2vwr_A Ligand of NUMB protein 99.0 1.7E-09 5.8E-14 89.5 9.5 74 192-266 15-89 (95)
56 2f5y_A Regulator of G-protein 99.0 1.7E-09 5.8E-14 88.8 9.3 70 193-266 14-83 (91)
57 3r68_A Na(+)/H(+) exchange reg 99.0 1.5E-09 5.2E-14 89.6 9.0 73 193-266 16-88 (95)
58 2qg1_A Multiple PDZ domain pro 99.0 1.6E-09 5.5E-14 89.0 9.0 74 192-266 15-89 (92)
59 1ihj_A INAD; intermolecular di 99.0 2.1E-09 7.3E-14 89.3 9.8 73 192-265 16-96 (98)
60 1wif_A RSGI RUH-020, riken cDN 99.0 6.9E-10 2.4E-14 97.2 7.0 75 189-265 34-110 (126)
61 2kjd_A Sodium/hydrogen exchang 99.0 2.5E-10 8.6E-15 99.9 4.1 75 192-266 19-93 (128)
62 2ejy_A 55 kDa erythrocyte memb 99.0 1.1E-09 3.9E-14 91.4 7.9 71 193-265 24-95 (97)
63 2kpk_A Membrane-associated gua 99.0 1.3E-09 4.6E-14 95.7 8.7 74 193-266 29-105 (129)
64 2awx_A Synapse associated prot 99.0 2.6E-09 8.9E-14 90.2 10.1 73 193-266 14-93 (105)
65 2opg_A Multiple PDZ domain pro 99.0 3.2E-09 1.1E-13 88.2 10.6 74 192-266 14-90 (98)
66 1w9e_A Syntenin 1; cell adhesi 99.0 3.6E-09 1.2E-13 96.8 11.8 83 191-281 14-96 (166)
67 3khf_A Microtubule-associated 99.0 2.3E-09 7.8E-14 89.4 9.6 59 207-266 35-93 (99)
68 3ngh_A PDZ domain-containing p 99.0 1.1E-09 3.6E-14 92.6 7.6 73 191-266 13-85 (106)
69 2vsv_A Rhophilin-2; scaffold p 99.0 1.9E-09 6.4E-14 92.0 9.1 70 193-265 34-103 (109)
70 2yt7_A Amyloid beta A4 precurs 99.0 1.1E-09 3.7E-14 92.0 7.2 72 193-265 21-98 (101)
71 2eeh_A PDZ domain-containing p 99.0 4E-09 1.4E-13 88.2 10.6 72 193-266 22-94 (100)
72 2d92_A INAD-like protein; PDZ 98.9 1.9E-09 6.7E-14 91.5 8.6 74 193-266 26-105 (108)
73 1whd_A RGS3, regulator of G-pr 98.9 1.5E-10 5.3E-15 97.0 1.6 82 181-266 14-95 (100)
74 1d5g_A Human phosphatase HPTP1 98.9 3E-09 1E-13 88.1 9.4 73 193-266 16-93 (96)
75 2fe5_A Presynaptic protein SAP 98.9 3.5E-09 1.2E-13 87.2 9.5 72 193-265 14-92 (94)
76 2fcf_A Multiple PDZ domain pro 98.9 1.9E-09 6.4E-14 90.5 7.9 60 206-266 39-99 (103)
77 2ego_A General receptor for ph 98.9 3.7E-09 1.3E-13 87.7 9.5 72 193-265 16-95 (96)
78 2jik_A Synaptojanin-2 binding 98.9 4.4E-09 1.5E-13 88.0 10.0 73 193-266 18-97 (101)
79 3i4w_A Disks large homolog 4; 98.9 4.2E-09 1.4E-13 88.5 9.8 72 193-265 22-94 (104)
80 3cyy_A Tight junction protein 98.9 4.2E-09 1.4E-13 86.3 9.5 66 194-265 16-82 (92)
81 2i1n_A Discs, large homolog 3; 98.9 3.7E-09 1.3E-13 88.6 9.3 73 193-266 15-94 (102)
82 3tsv_A Tight junction protein 98.9 3.7E-09 1.3E-13 92.3 9.6 73 193-266 39-112 (124)
83 3qik_A Phosphatidylinositol 3, 98.9 2.8E-09 9.7E-14 89.0 8.2 71 192-264 27-99 (101)
84 1ueq_A Membrane associated gua 98.9 3.8E-09 1.3E-13 91.9 9.4 75 192-266 29-106 (123)
85 1wi4_A Synip, syntaxin binding 98.9 2.6E-09 9E-14 91.0 8.3 74 193-266 25-105 (109)
86 1wf7_A Enigma homologue protei 98.9 1.3E-09 4.3E-14 91.8 5.8 73 193-266 15-88 (103)
87 1wh1_A KIAA1095 protein; PDZ d 98.9 1.3E-09 4.5E-14 95.0 6.1 76 189-266 28-107 (124)
88 3axa_A Afadin, nectin-3, prote 98.9 5.6E-09 1.9E-13 88.2 9.8 73 193-266 21-98 (106)
89 3cbz_A Dishevelled-2; PDZ doma 98.9 4.4E-09 1.5E-13 89.4 9.1 74 193-266 17-96 (108)
90 1ujv_A Membrane associated gua 98.9 2.8E-09 9.6E-14 88.7 7.7 75 188-266 16-91 (96)
91 2g5m_B Neurabin-2; spinophilin 98.9 6E-10 2.1E-14 95.3 3.7 74 192-266 14-95 (113)
92 2o2t_A Multiple PDZ domain pro 98.9 1.8E-09 6.3E-14 92.9 6.7 99 155-266 6-110 (117)
93 1wha_A KIAA0147 protein, scrib 98.9 1.5E-09 5.1E-14 91.7 6.0 73 193-266 18-98 (105)
94 3suz_A Amyloid beta A4 precurs 98.9 3.1E-10 1.1E-14 118.1 2.1 138 111-266 150-294 (388)
95 1qav_A Alpha-1 syntrophin (res 98.9 7E-09 2.4E-13 84.9 9.8 72 193-265 16-89 (90)
96 3egg_C Spinophilin; PP1, serin 98.9 2.2E-09 7.6E-14 98.9 7.6 72 193-265 91-170 (170)
97 2q9v_A Membrane-associated gua 98.9 3.4E-09 1.2E-13 86.7 7.8 73 193-265 13-88 (90)
98 1q3o_A Shank1; PDZ, GKAP, pept 98.9 5.9E-09 2E-13 88.5 9.7 73 192-265 18-103 (109)
99 1uez_A KIAA1526 protein; PDZ d 98.9 1.5E-09 5.3E-14 90.9 5.9 76 189-266 17-93 (101)
100 2e7k_A Maguk P55 subfamily mem 98.9 4.7E-09 1.6E-13 86.4 8.7 70 192-265 17-87 (91)
101 1va8_A Maguk P55 subfamily mem 98.9 5.3E-09 1.8E-13 89.6 9.1 70 194-266 38-108 (113)
102 1wi2_A Riken cDNA 2700099C19; 98.9 4.5E-09 1.5E-13 88.6 8.4 72 193-266 27-99 (104)
103 2eeg_A PDZ and LIM domain prot 98.9 2.7E-09 9.1E-14 88.2 6.8 73 193-266 18-91 (94)
104 3kzd_A TIAM-1, T-lymphoma inva 98.9 9.2E-09 3.1E-13 85.2 9.9 69 193-264 20-90 (94)
105 1ujd_A KIAA0559 protein; PDZ d 98.9 8E-09 2.7E-13 89.0 10.0 73 193-266 30-109 (117)
106 1v5l_A PDZ and LIM domain 3; a 98.9 2E-09 6.7E-14 90.7 5.9 72 194-266 16-88 (103)
107 1rgw_A ZAsp protein; PDZ, cyph 98.9 4.5E-09 1.6E-13 84.9 7.9 72 193-265 11-83 (85)
108 1vb7_A PDZ and LIM domain 2; P 98.9 2E-09 7E-14 88.9 5.8 73 193-266 16-89 (94)
109 2fne_A Multiple PDZ domain pro 98.9 5.7E-09 1.9E-13 90.1 8.7 73 193-266 36-113 (117)
110 1v5q_A GRIP1 homolog, glutamat 98.9 3.4E-09 1.2E-13 92.1 7.3 77 190-266 24-107 (122)
111 2kv8_A RGS12, regulator of G-p 98.9 1.4E-09 4.8E-14 87.6 4.6 69 193-265 13-81 (83)
112 2edp_A Fragment, shroom family 98.9 1.6E-09 5.5E-14 90.7 5.0 87 177-266 6-94 (100)
113 2la8_A Inactivation-NO-after-p 98.9 5E-09 1.7E-13 88.9 7.9 72 192-266 13-85 (106)
114 4fgm_A Aminopeptidase N family 98.9 8.3E-09 2.8E-13 112.9 11.7 80 192-282 484-564 (597)
115 1v62_A KIAA1719 protein; struc 98.9 6.5E-09 2.2E-13 89.6 8.6 73 193-266 27-102 (117)
116 2dlu_A INAD-like protein; PDZ 98.9 4E-09 1.4E-13 89.9 7.2 72 193-266 26-98 (111)
117 1um1_A KIAA1849 protein, RSGI 98.8 1.1E-08 3.8E-13 86.9 9.8 73 193-266 19-96 (110)
118 1y7n_A Amyloid beta A4 precurs 98.8 8.9E-09 3.1E-13 84.6 8.8 67 192-265 23-89 (90)
119 1tp5_A Presynaptic density pro 98.8 1.1E-08 3.7E-13 88.3 9.6 73 193-266 25-98 (119)
120 3r0h_A INAD, inactivation-NO-a 98.8 1.2E-08 4.2E-13 96.2 10.7 97 168-266 6-108 (206)
121 1wf8_A Neurabin-I; PDZ domain, 98.8 6.7E-09 2.3E-13 87.9 8.0 73 193-266 20-100 (107)
122 4e34_A Golgi-associated PDZ an 98.8 1.4E-08 4.8E-13 82.4 9.5 71 193-264 14-86 (87)
123 2dc2_A GOPC, golgi associated 98.8 1.4E-08 4.8E-13 85.4 9.5 74 192-266 20-95 (103)
124 1wfg_A Regulating synaptic mem 98.8 1E-08 3.5E-13 90.3 9.0 75 192-266 47-127 (131)
125 2rcz_A Tight junction protein 98.8 1.5E-08 5.2E-13 80.7 9.2 66 194-265 14-80 (81)
126 3e17_A Tight junction protein 98.8 8.1E-09 2.8E-13 84.4 7.6 66 194-265 14-80 (88)
127 1uit_A Human discs large 5 pro 98.8 8.3E-09 2.8E-13 88.8 8.0 72 193-266 30-101 (117)
128 2l97_A HTRA, putative serine p 98.8 1.5E-08 5.2E-13 89.6 9.9 68 206-282 57-125 (134)
129 2h2b_A Tight junction protein 98.8 1.5E-08 5E-13 85.7 9.3 73 192-266 18-97 (107)
130 2pzd_A Serine protease HTRA2; 98.8 2E-08 6.8E-13 85.8 10.3 69 205-283 34-102 (113)
131 1nf3_C PAR-6B; semi-CRIB motif 98.8 7E-09 2.4E-13 90.9 7.4 74 192-266 41-125 (128)
132 1uhp_A Hypothetical protein KI 98.8 1.6E-08 5.4E-13 85.6 9.4 74 192-266 18-101 (107)
133 3i18_A LMO2051 protein; alpha- 98.8 2.9E-08 9.8E-13 83.1 10.8 68 205-281 6-74 (100)
134 1x6d_A Interleukin-16; PDZ dom 98.8 3.9E-09 1.3E-13 91.2 5.4 76 191-266 25-103 (119)
135 2daz_A INAD-like protein; PDZ 98.8 5E-09 1.7E-13 91.2 6.1 74 192-266 35-111 (124)
136 2csj_A TJP2 protein; PDZ domai 98.8 3E-09 1E-13 91.6 4.6 91 173-265 5-103 (117)
137 1mfg_A ERB-B2 interacting prot 98.8 1.6E-08 5.4E-13 83.6 8.9 70 194-265 14-92 (95)
138 3nfk_A Tyrosine-protein phosph 98.8 1.9E-08 6.6E-13 85.0 9.6 73 193-265 29-107 (107)
139 2kl1_A YLBL protein; structure 98.8 9.5E-09 3.2E-13 85.1 7.3 69 205-282 4-73 (94)
140 3id1_A Regulator of sigma E pr 98.8 2E-08 7E-13 83.3 9.3 66 209-280 5-71 (95)
141 3gge_A PDZ domain-containing p 98.8 2E-08 6.9E-13 83.1 9.1 72 193-265 16-89 (95)
142 2eno_A Synaptojanin-2-binding 98.8 1.4E-08 4.7E-13 87.8 8.5 73 193-266 28-107 (120)
143 3hpk_A Protein interacting wit 98.8 1.9E-08 6.5E-13 87.6 9.4 73 192-265 30-104 (125)
144 3qe1_A Sorting nexin-27, G pro 98.8 1.2E-08 4.2E-13 86.2 7.9 57 209-266 46-102 (107)
145 2eei_A PDZ domain-containing p 98.8 3.8E-09 1.3E-13 89.2 4.7 74 192-266 18-91 (106)
146 2kjp_A Uncharacterized protein 98.8 2.9E-09 9.8E-14 87.8 3.8 66 208-282 3-69 (91)
147 2z17_A Pleckstrin homology SEC 98.8 5.4E-09 1.8E-13 88.0 5.5 87 170-262 9-103 (104)
148 2dkr_A LIN-7 homolog B; LIN-7B 98.8 1.3E-08 4.4E-13 83.7 7.5 73 193-266 16-90 (93)
149 1uf1_A KIAA1526 protein; PDZ d 98.8 1.3E-08 4.4E-13 89.1 7.8 72 193-266 32-104 (128)
150 2gzv_A PRKCA-binding protein; 98.8 2.1E-08 7.3E-13 86.0 9.0 73 192-265 35-109 (114)
151 2zpm_A Regulator of sigma E pr 98.8 1.4E-08 4.9E-13 83.1 7.3 66 208-281 6-71 (91)
152 1uew_A Membrane associated gua 98.8 1.3E-08 4.3E-13 87.3 7.2 73 193-266 22-103 (114)
153 2yub_A LIMK-2, LIM domain kina 98.8 9.3E-09 3.2E-13 89.0 6.3 72 194-266 30-105 (118)
154 1q7x_A PDZ2B domain of PTP-BAS 98.7 7.2E-09 2.5E-13 87.8 5.5 73 193-266 20-102 (108)
155 2d8i_A T-cell lymphoma invasio 98.7 1.4E-08 4.8E-13 87.3 7.2 70 194-266 30-101 (114)
156 3k1r_A Harmonin; protein-prote 98.7 3.2E-08 1.1E-12 92.8 10.0 72 193-266 96-168 (192)
157 1n7t_A 99-MER peptide of densi 98.7 1.7E-08 5.8E-13 84.7 7.2 70 194-265 22-100 (103)
158 2cs5_A Tyrosine-protein phosph 98.7 1.6E-08 5.4E-13 87.3 6.7 76 191-266 25-106 (119)
159 1vae_A Rhophilin 2, rhophilin, 98.7 8.9E-09 3E-13 88.1 4.6 70 193-265 26-95 (111)
160 2p3w_A Probable serine proteas 98.7 5.4E-08 1.9E-12 82.9 9.3 69 205-283 34-102 (112)
161 1y8t_A Hypothetical protein RV 98.7 8.8E-08 3E-12 97.0 12.3 83 192-282 228-312 (324)
162 3soe_A Membrane-associated gua 98.7 9.6E-08 3.3E-12 81.8 10.6 71 192-266 22-93 (113)
163 2ehr_A INAD-like protein; PDZ 98.7 3.4E-08 1.2E-12 84.9 7.8 74 192-266 26-110 (117)
164 2i6v_A General secretion pathw 98.7 1.5E-07 5E-12 76.6 11.2 64 208-279 21-85 (87)
165 1ufx_A KIAA1526 protein; PDZ d 98.7 2.1E-08 7.3E-13 84.4 6.4 74 193-266 17-97 (103)
166 2lob_A Golgi-associated PDZ an 98.1 2.1E-09 7.3E-14 92.1 0.0 94 169-263 13-110 (112)
167 1uju_A Scribble; PDZ domain, c 98.7 1.3E-08 4.5E-13 86.7 4.9 74 192-266 20-104 (111)
168 3gsl_A Disks large homolog 4; 98.7 1.1E-07 3.8E-12 88.4 11.5 73 193-266 16-95 (196)
169 2krg_A Na(+)/H(+) exchange reg 98.7 1.7E-09 5.8E-14 103.5 -1.1 91 192-289 19-112 (216)
170 1p1d_A PDZ45, glutamate recept 98.7 7.7E-08 2.6E-12 90.2 10.3 76 191-266 16-98 (196)
171 2qbw_A PDZ-fibronectin fusion 98.7 1.2E-07 4E-12 88.6 11.1 58 205-264 23-80 (195)
172 1um7_A Synapse-associated prot 98.6 1.9E-08 6.4E-13 85.8 4.6 72 193-265 26-98 (113)
173 2i4s_A General secretion pathw 98.6 1.4E-07 4.8E-12 79.6 9.8 64 208-279 39-103 (105)
174 2edv_A FERM and PDZ domain-con 98.6 9.2E-09 3.2E-13 85.4 2.3 69 193-266 21-89 (96)
175 3tsz_A Tight junction protein 98.6 8.3E-08 2.8E-12 99.8 9.9 72 194-266 20-92 (391)
176 1te0_A Protease DEGS; two doma 98.6 1.9E-07 6.5E-12 94.4 12.3 70 205-282 243-313 (318)
177 1x5n_A Harmonin; PDZ domain, u 98.6 8.5E-08 2.9E-12 81.9 7.2 72 192-265 26-98 (114)
178 2qt5_A Glutamate receptor-inte 98.6 2.3E-07 7.7E-12 87.2 10.7 74 192-266 18-93 (200)
179 3r0h_A INAD, inactivation-NO-a 98.5 2.2E-07 7.4E-12 87.5 9.2 71 193-266 125-196 (206)
180 1z87_A Alpha-1-syntrophin; pro 98.5 1.2E-07 4.1E-12 93.1 7.5 74 192-266 88-163 (263)
181 3stj_A Protease DEGQ; serine p 98.5 3.2E-07 1.1E-11 93.8 10.4 69 206-282 263-332 (345)
182 3shw_A Tight junction protein 98.5 3E-07 1E-11 97.3 9.8 73 193-266 11-84 (468)
183 3gsl_A Disks large homolog 4; 98.5 4.7E-07 1.6E-11 84.1 9.8 72 194-266 112-190 (196)
184 2xkx_A Disks large homolog 4; 98.4 2.5E-07 8.6E-12 103.6 8.6 87 192-281 69-162 (721)
185 2hga_A Conserved protein MTH13 98.4 7.6E-07 2.6E-11 77.6 9.6 65 205-280 24-89 (125)
186 3rle_A Golgi reassembly-stacki 98.4 4.2E-07 1.4E-11 86.3 8.2 70 206-280 16-86 (209)
187 2qt5_A Glutamate receptor-inte 98.4 7.9E-07 2.7E-11 83.4 9.9 71 194-265 118-194 (200)
188 3pv2_A DEGQ; trypsin fold, PDZ 98.4 1.6E-06 5.6E-11 91.8 12.5 68 206-281 282-350 (451)
189 1lcy_A HTRA2 serine protease; 98.4 1.1E-06 3.9E-11 89.0 10.4 67 206-282 256-322 (325)
190 3rle_A Golgi reassembly-stacki 98.3 1.2E-06 4E-11 83.2 9.3 83 193-282 95-182 (209)
191 3qo6_A Protease DO-like 1, chl 98.3 9.2E-07 3.1E-11 90.5 8.8 69 206-282 251-331 (348)
192 1p1d_A PDZ45, glutamate recept 98.3 7.7E-07 2.6E-11 83.3 7.2 73 193-266 119-195 (196)
193 4a8c_A Periplasmic PH-dependen 98.2 4.6E-06 1.6E-10 87.9 10.3 68 206-281 263-331 (436)
194 3num_A Serine protease HTRA1; 98.1 4.9E-07 1.7E-11 91.9 0.0 67 206-282 254-320 (332)
195 3pv2_A DEGQ; trypsin fold, PDZ 98.1 9.5E-06 3.2E-10 85.9 9.8 65 206-279 386-450 (451)
196 4a8c_A Periplasmic PH-dependen 98.1 1.1E-05 3.8E-10 85.0 10.2 67 206-281 363-429 (436)
197 2xkx_A Disks large homolog 4; 98.0 1.3E-05 4.6E-10 89.6 9.5 73 193-266 318-391 (721)
198 1ky9_A Protease DO, DEGP, HTRA 97.9 3.5E-06 1.2E-10 89.1 2.6 68 206-281 286-354 (448)
199 4fln_A Protease DO-like 2, chl 97.7 8E-05 2.7E-09 80.1 9.3 70 205-281 276-354 (539)
200 1w9e_A Syntenin 1; cell adhesi 97.7 9.9E-05 3.4E-09 67.0 8.5 63 193-262 100-162 (166)
201 1ky9_A Protease DO, DEGP, HTRA 97.6 7.1E-06 2.4E-10 86.8 0.0 59 205-266 382-440 (448)
202 3suz_A Amyloid beta A4 precurs 97.4 1.9E-05 6.6E-10 81.9 0.0 56 209-265 318-373 (388)
203 4fln_A Protease DO-like 2, chl 95.8 0.015 5.3E-07 62.3 7.9 56 206-263 415-470 (539)
204 3viv_A 441AA long hypothetical 66.2 25 0.00086 33.0 9.2 80 304-409 8-93 (230)
205 2j3t_D Trafficking protein par 54.0 12 0.00041 35.1 4.4 63 195-265 36-101 (219)
206 2kln_A Probable sulphate-trans 38.3 1.1E+02 0.0039 25.0 8.0 42 304-345 14-59 (130)
207 3bl4_A Uncharacterized protein 32.9 67 0.0023 27.1 5.5 42 304-345 19-63 (124)
208 4dgh_A Sulfate permease family 32.5 1.7E+02 0.006 23.8 8.2 41 304-345 19-60 (130)
209 1y7o_A ATP-dependent CLP prote 29.8 89 0.003 28.8 6.3 80 304-410 45-127 (218)
210 1th8_B Anti-sigma F factor ant 29.0 68 0.0023 25.4 4.8 41 305-345 12-54 (116)
211 2ka5_A Putative anti-sigma fac 25.6 1.1E+02 0.0038 25.0 5.6 42 304-345 20-63 (125)
212 3ny7_A YCHM protein, sulfate t 25.3 2.3E+02 0.0078 22.8 7.5 41 304-345 16-57 (118)
213 1sbo_A Putative anti-sigma fac 21.8 85 0.0029 24.5 4.0 41 305-345 13-55 (110)
214 4f47_A Enoyl-COA hydratase ECH 20.9 1.4E+02 0.0047 28.4 6.0 97 304-407 28-136 (278)
215 3llo_A Prestin; STAS domain, c 20.8 2.3E+02 0.0079 23.4 6.8 42 304-345 29-75 (143)
216 3t6o_A Sulfate transporter/ant 20.6 3.3E+02 0.011 21.7 8.0 42 304-345 13-59 (121)
217 2cby_A ATP-dependent CLP prote 20.2 1.3E+02 0.0044 27.4 5.3 69 316-410 38-109 (208)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=3e-62 Score=512.13 Aligned_cols=354 Identities=35% Similarity=0.604 Sum_probs=314.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCC
Q 047092 110 NTVQRTLVEAWGLIRETFVDPTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSD 189 (510)
Q Consensus 110 ~~~q~~f~e~w~~i~~~Y~~~~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~ 189 (510)
+++++.|+++|+.|+++|+++.++++||++++++|++. ....+.++++.+|.+|+++|+|+||.|++++++..+.....
T Consensus 3 ~~~~~~f~~~w~~i~~~y~~~~~~~~dW~~~~~~y~~~-~~~~~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~~~ 81 (388)
T 1fc6_A 3 TSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKK-EPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRGTA 81 (388)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTGGGCCHHHHHHHHHHH-SCCSSHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHHHHHHHhcccccCccHHHHHHHhhhc-cCCCCHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999987 67889999999999999999999999999999999887778
Q ss_pred CceeeeeEEEEEE-cCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCC
Q 047092 190 GNLQGVGLFISVE-PRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDV 268 (510)
Q Consensus 190 g~~~glGi~l~~~-~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~ 268 (510)
|.+.|+|+.+... ..+++++|..|.+||||++|||++||+|++|||+++.++..+++..++++..|++|+|+|.|.+
T Consensus 82 g~~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g-- 159 (388)
T 1fc6_A 82 GSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG-- 159 (388)
T ss_dssp SSCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT--
T ss_pred CceEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCC--
Confidence 8999999998764 2357899999999999999999999999999999999998888999999999999999999974
Q ss_pred CCCC--ceEEEEEecceeeeCCCcceeeec-----cCCCCCcCceEEEEecccchhHHHHHHHHHHHHHHcCCCEEEEEc
Q 047092 269 GRES--GTREVNIPRGYIKLSPISRTIIPH-----RTPDGHLTKTGYVKLSAFSQTAAADMANTIHELESEGAHSYILDL 341 (510)
Q Consensus 269 ~~~g--~~~~vtl~r~~~~~~~v~~~~i~~-----~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDL 341 (510)
. +.++++|+|..+..+++.+..+.. ...+..+++||||+|++|..++.++|.++|.+|+++++++|||||
T Consensus 160 ---~~~~~~~~~l~r~~i~~~~v~~~~~~~~~~~~~~~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~~~lIlDL 236 (388)
T 1fc6_A 160 ---APSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDI 236 (388)
T ss_dssp ---EEEEEEEEEEECBCCCCCCEEEEEECSCCGGGSCTTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred ---CCcceEEEEEEEceeecCceeeeeeccccccccccccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCCCeEEEEc
Confidence 2 278999999988888887665420 001122468999999999999899999999999989999999999
Q ss_pred CCCC---hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCc-cCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEE
Q 047092 342 RNNP---VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHA-ITHDPLVVLVNEGSASASEILAGALHDNGRAILV 417 (510)
Q Consensus 342 R~N~---~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~-~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vV 417 (510)
|+|+ +..+..++++|++++ .+++++.|.|....+.. .+.. .+.+||+||||++||||||+|+++||+++++++|
T Consensus 237 R~N~GG~~~~~~~~~~~f~~~~-~i~~~~~r~~~~~~~~~-~~~~~~~~~pv~VLvn~~taSasEi~a~al~~~~~~~~v 314 (388)
T 1fc6_A 237 RNNGGGLFPAGVNVARMLVDRG-DLVLIADSQGIRDIYSA-DGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIA 314 (388)
T ss_dssp TTCCCBCHHHHHHHHHHHCSSS-EEEEEEETTEEEEEEEC-CSCCSCSSSCEEEEECTTCCTHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHcCCC-cEEEEecCCCceeEEec-CCccccCCCCEEEEeCCCCccHHHHHHHHHhhCCCEEEE
Confidence 9999 667888999999987 67888888887655543 3333 3899999999999999999999999999999999
Q ss_pred ccCCCCCceeeeEEEcCCCcEEEEEEEEEEcCCCCcccCCCccccEEecCCCCC
Q 047092 418 GHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTDMLS 471 (510)
Q Consensus 418 G~~T~G~g~~~~~~~L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~~~~~~ 471 (510)
|++|+|++.++..++|+||+.+.+|+++|++|+|+.+++.||.|||+|+.+.+.
T Consensus 315 G~~T~Gkg~~~~~~~L~~g~~l~~t~~~~~~p~G~~~~~~Gi~PDi~v~~~~~~ 368 (388)
T 1fc6_A 315 GERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLP 368 (388)
T ss_dssp ESCCCCCCEEEEEEECTTSCEEEEEEEEEECTTSCBCTTTCCCCSEECCTTSSC
T ss_pred eecCCCCCeeeeEEEcCCCCEEEEEEEEEEcCCCCCccCCCcCCCEEeCCcccc
Confidence 999999999999999999999999999999999999999999999999988643
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=8.6e-51 Score=473.20 Aligned_cols=357 Identities=17% Similarity=0.191 Sum_probs=294.3
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCCCCCCh-HHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhc
Q 047092 108 EVNTVQRTLVEAWGLIRETFVDPTFNHQDW-DSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFRI 186 (510)
Q Consensus 108 ~~~~~q~~f~e~w~~i~~~Y~~~~~~~~dW-d~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~ 186 (510)
+..+.++.|+++|+.|+++|+++. ++.|| ++++++|++.+....+.++++.+|++|+++|+|+|+++. ++++..
T Consensus 656 ~~~~~~~~~~~~~~~~~~~y~~~~-~~~d~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~d~ht~~~-~~~~~~--- 730 (1045)
T 1k32_A 656 IHEEFLQMYDEAWKLARDNYWNEA-VAKEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEM-GGTFTD--- 730 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCHH-HHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTTCCSCCCEE-CCCCCS---
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHhhcccCCHHHHHHHHHHHHHhcCCCcceEC-hhHhcc---
Confidence 346678999999999999999998 99999 999999999999999999999999999999999999765 445443
Q ss_pred cCCCceeeeeEEEEEEcCCCcEEEEeecCC--------ChhhhcC--CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCC
Q 047092 187 GSDGNLQGVGLFISVEPRTGHLVVLSCVED--------SPAARAG--IHEGDELIEINGERLDGIDSEAAALKLRGRAGT 256 (510)
Q Consensus 187 ~~~g~~~glGi~l~~~~~~g~l~V~~v~~g--------sPA~~AG--L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~ 256 (510)
...+.+.|+|+.+... +++++|..|++| |||+++| |+ ||+|++|||+++.++. ++..+++|..|+
T Consensus 731 ~~~~~~~g~G~~~~~~--~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~ 805 (1045)
T 1k32_A 731 KDPFRSGRIACDFKLD--GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGT 805 (1045)
T ss_dssp CCCCCCCBCSEEEEEE--TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTS
T ss_pred ccccccceecEEEEEe--CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCC
Confidence 3356788999999875 788999999998 9999999 99 9999999999999975 778899999999
Q ss_pred eEEEEEEeCCCCCCCCceEEEEEecceeeeCCCcce-ee------eccCCCCCcCceEEEEecccchhHHHHHHHHHHHH
Q 047092 257 PVTVKVHSGKDVGRESGTREVNIPRGYIKLSPISRT-II------PHRTPDGHLTKTGYVKLSAFSQTAAADMANTIHEL 329 (510)
Q Consensus 257 ~V~l~v~r~~~~~~~g~~~~vtl~r~~~~~~~v~~~-~i------~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l 329 (510)
+|+|+|.|++ ++.++++|++.. ...++.+. ++ ..... +++||||+|++|...+.++|.++|.++
T Consensus 806 ~v~l~v~r~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~igyi~~~~f~~~~~~~~~~~~~~~ 876 (1045)
T 1k32_A 806 SARIRLSGKG-----GDKRDLMIDILD-DDRFIRYRSWVEANRRYVHERS---KGTIGYIHIPDMGMMGLNEFYRLFINE 876 (1045)
T ss_dssp EEEEEEECSS-----SCEEEEEEECBS-CCHHHHHHHHHHHHHHHHHHHT---TTSEEEEECCCBSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCC-----CceEEEEEEEcc-cccchhhhhhhhhcceeEEEec---CCCEEEEEECccCchHHHHHHHHHHHh
Confidence 9999999974 466788887532 11122211 11 01112 468999999999998889999999865
Q ss_pred HHcCCCEEEEEcCCCC-hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEEEcCCCCcHHHHHHHHH
Q 047092 330 ESEGAHSYILDLRNNP-VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGAL 408 (510)
Q Consensus 330 ~~~~~~~LIlDLR~N~-~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~L 408 (510)
+++++||||||+|+ +.....++++| .+ .++++++.|.|....+.. ..+.+||+||||++||||||+|+++|
T Consensus 877 --~~~~~liiDlR~N~GG~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~vL~~~~taSa~e~~~~~l 948 (1045)
T 1k32_A 877 --SSYQGLIVDVRFNGGGFVSQLIIEKL-MN-KRIGYDNPRRGTLSPYPT----NSVRGKIIAITNEYAGSDGDIFSFSF 948 (1045)
T ss_dssp --TTSSEEEEECTTCCCBSCHHHHHHHH-TC-BCCEEEEESSSCCEEEST----TCBCSEEEEEECTTCCTHHHHHHHHH
T ss_pred --CCCCEEEEEcCcCCCCCHHHHHHhhc-cC-CcEEEEecCCCceeeccc----cCCCCCEEEEECCCCccHHHHHHHHH
Confidence 48999999999999 32233456665 43 378888899887665432 24789999999999999999999999
Q ss_pred hcCCCeEEEccCCCCCceee--eEEEcCCCcEEEEE-EEEEEcCCCCcccCCCccccEEecCCCCCCchhhhhccccccC
Q 047092 409 HDNGRAILVGHKTFGKGKIQ--SVTELHDGSALFVT-VAKYLSPALHDIDQVGITPDVQCTTDMLSSPKESLLKNKSSVS 485 (510)
Q Consensus 409 k~~~~a~vVG~~T~G~g~~~--~~~~L~dg~~l~vt-~~~~~~p~G~~~e~~GV~PDi~V~~~~~~~~~~~~~~~~~~~~ 485 (510)
|++++++|||++|+| |.++ ..+.|+||+.+.+| +++|++|+|+.+|+.||.|||+|+.+..+ +.
T Consensus 949 ~~~~~~~~vG~~t~G-g~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~Gi~Pdi~v~~~~~~-----~~------- 1015 (1045)
T 1k32_A 949 KKLGLGKLIGTRTWG-GVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGVENYGVDPDVEIEYAPHD-----YL------- 1015 (1045)
T ss_dssp HHTTSEEEEESCCCC-CCEECCCCCBCTTSCEECCCCEEEEETTTBTTTTTTCCCCSEECCCCHHH-----HH-------
T ss_pred hhcCCEEEEccCCCC-CccccCceEEcCCCCeEEEeeEEEEECCCCCccCCCCccCCEEeCCChHH-----hc-------
Confidence 999999999999999 6554 56899999999998 79999999999999999999999976532 11
Q ss_pred CCCCChHHHHHHHHHhhccc
Q 047092 486 SLEADSCIMVAEHELDVQES 505 (510)
Q Consensus 486 ~~~~D~~l~~A~~~L~~~~~ 505 (510)
.++|+||++|+++|+.+..
T Consensus 1016 -~~~d~~l~~a~~~l~~~~~ 1034 (1045)
T 1k32_A 1016 -SGKDPQIDYAIDALIEELR 1034 (1045)
T ss_dssp -TTCCHHHHHHHHHHHHHTT
T ss_pred -cCccHHHHHHHHHHHHHHH
Confidence 2789999999999988753
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=1.4e-47 Score=400.64 Aligned_cols=348 Identities=18% Similarity=0.234 Sum_probs=253.9
Q ss_pred HHHHHHHHHHcCCCC-C---CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCC-ceEeeChHHHhhhhccCCCc
Q 047092 117 VEAWGLIRETFVDPT-F---NHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDP-FTRIISPKEYQSFRIGSDGN 191 (510)
Q Consensus 117 ~e~w~~i~~~Y~~~~-~---~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~-Ht~~~~~~~~~~~~~~~~g~ 191 (510)
.-+|..|++.|...+ . ...+| ..+.++|+.. ++... |+ ++++.+..+ ... .
T Consensus 17 ~~i~~~m~~~Ylw~~~ip~~~~~~~-------------~~~p~~~f~~---l~~~~-D~~fS~i~~~~~-----~~~--~ 72 (403)
T 3k50_A 17 IWIDSVMRQEYLWYRDMPSPAAPDY-------------FQKPEAFLKK---AVASM-DNGFSKIDSLLD-----EPI--P 72 (403)
T ss_dssp CHHHHHHHHHCTTGGGSCCCCCCCS-------------SSCHHHHHHH---HSCTT-CSSCSEEEECCS-----SCC--C
T ss_pred HHHHHHHHHhccchhhccCccCccc-------------cCCHHHHHHH---hCccc-CCCceeEccccc-----cCc--c
Confidence 457889999998643 1 11121 2334445443 33444 99 666655433 112 2
Q ss_pred eeeeeEEEEEEcCC-C--cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCC
Q 047092 192 LQGVGLFISVEPRT-G--HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDV 268 (510)
Q Consensus 192 ~~glGi~l~~~~~~-g--~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~ 268 (510)
..|+|+.+.....+ + .++|..|.+||||++|||++||+|++|||+++..+. +..++++ .|++|+|++.|.+..
T Consensus 73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g~~ 148 (403)
T 3k50_A 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEVVG 148 (403)
T ss_dssp BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEEC-
T ss_pred ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCCcc
Confidence 67788877654221 1 378999999999999999999999999999999974 6677888 999999999997521
Q ss_pred CCCCc-------eEEEEEe-cceeeeCCCc-ceeeeccCCCCCcCceEEEEecccch-------hHHHHHHHHHHHHHHc
Q 047092 269 GRESG-------TREVNIP-RGYIKLSPIS-RTIIPHRTPDGHLTKTGYVKLSAFSQ-------TAAADMANTIHELESE 332 (510)
Q Consensus 269 ~~~g~-------~~~vtl~-r~~~~~~~v~-~~~i~~~~~~~~~~~igYi~i~sF~~-------~~~~~l~~~l~~l~~~ 332 (510)
. .++ ..+++|+ +..+...|+. .+++.. .+++||||+|++|.. .+.++|.++|++|+++
T Consensus 149 ~-~~~~~~~~i~~~~~~l~~~r~~~~~pv~~~~v~~~-----~~~~iGYI~i~~F~~~t~~~~~~~~~~l~~al~~l~~~ 222 (403)
T 3k50_A 149 E-DGEVTGGVVPIGETTMPASRSLVDKPVHRFEIIPW-----NGKKVGYLMYNEFKAGPTTDSQAYNDDLRRAFRDFQTG 222 (403)
T ss_dssp -----CEEEEEEEEEEEECCCBCCCCCSEEEEEEEEE-----TTEEEEEEEECCBCCCSSTTCCHHHHHHHHHHHHHHHT
T ss_pred c-ccccccccccccceEEEeeeeeeeccceeeeeeee-----CCCcEEEEEEccccCcccccchhhHHHHHHHHHHHHHC
Confidence 0 000 1134443 1222233432 233321 136899999999987 3468999999999999
Q ss_pred CCCEEEEEcCCCC---hhhHHHHHHhhcCCCce---EEEEe--cCCCcee-EEEcC-----CCCccCCCcEEEEEcCCCC
Q 047092 333 GAHSYILDLRNNP---VILRLDVAQIWLDGDET---LVNAV--DREGHTL-PINMV-----DGHAITHDPLVVLVNEGSA 398 (510)
Q Consensus 333 ~~~~LIlDLR~N~---~~~~~~la~~fl~~~~~---~~~~~--~r~g~~~-~~~~~-----~~~~~~~gpvvVLvn~~Ta 398 (510)
++++||||||+|+ +..+..++++|++++.. +++++ +|.+... .+... .+.....+|++||||++||
T Consensus 223 ~~~~lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vL~~~~ta 302 (403)
T 3k50_A 223 GVNEFVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNATR 302 (403)
T ss_dssp TCCEEEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECCGGGTTTSCCCCCSEEEEEECTTCC
T ss_pred CCcEEEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEeccccccccccccCCCCEEEEECCCCc
Confidence 9999999999999 78899999999998642 67776 4555432 23221 1234456899999999999
Q ss_pred cHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEE-cCCCcEEEEEEEEEEcCCCCcccCCCccccEEecCCCCCCchhhh
Q 047092 399 SASEILAGALHDNGRAILVGHKTFGKGKIQSVTE-LHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTDMLSSPKESL 477 (510)
Q Consensus 399 SaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~-L~dg~~l~vt~~~~~~p~G~~~e~~GV~PDi~V~~~~~~~~~~~~ 477 (510)
||||+|+++||+++++++||++|+|++.++..+. +++|+.+++++.++++|+|..+++.||.|||+|+.+........
T Consensus 303 Sa~E~~~~~l~~~~~~~~iG~~T~G~~~~~~~~~~~~~g~~l~~t~~~~~~~~G~~~~~~Gi~PDi~v~~~~~~~~~~~- 381 (403)
T 3k50_A 303 GAAEMVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILNLVVCNVYNAEEKSDYATGFKPTYEYNEDSYLSTYLP- 381 (403)
T ss_dssp THHHHHHHHHTTTSEEEEEESCCCCCCEEEEEEECSSSCEEEEEEEEEEECTTSCCCCTTCCCCSEECCGGGCGGGCCC-
T ss_pred cHHHHHHHHHhhCCCEEEEeecCCCCCeeeeEEEeCCCCcEEEEEEEEEECCCCCCccCCCcCceEEeCCCcccccccc-
Confidence 9999999999999999999999999999888886 78899999999999999999999999999999987642000001
Q ss_pred hccccccCCCCCChHHHHHHHHHhhcccc
Q 047092 478 LKNKSSVSSLEADSCIMVAEHELDVQESK 506 (510)
Q Consensus 478 ~~~~~~~~~~~~D~~l~~A~~~L~~~~~~ 506 (510)
...++|+||++|+++|..+.+|
T Consensus 382 -------~~~~~D~~L~~Al~~l~~~~~~ 403 (403)
T 3k50_A 382 -------FGNTNETLLNAALKIMSGITDK 403 (403)
T ss_dssp -------TTCTTSHHHHHHHHHHHTSCC-
T ss_pred -------cCCCccHHHHHHHHHHHhcccC
Confidence 1236899999999999887653
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=100.00 E-value=1.4e-32 Score=292.84 Aligned_cols=359 Identities=19% Similarity=0.230 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHHHHcCCCC----CCCCChHHHHHHHHHHh--cCCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhh
Q 047092 112 VQRTLVEAWGLIRETFVDPT----FNHQDWDSKLQQTMVEI--FPLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFR 185 (510)
Q Consensus 112 ~q~~f~e~w~~i~~~Y~~~~----~~~~dWd~~~~~~~~~~--~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~ 185 (510)
..+.|+-+-.++..+|+... ..+.|-...+.+...++ ....+..+|+..+..++..++|.|+.+..+..
T Consensus 7 ~~~d~~~l~~l~~~kYap~~wK~~~~g~Dl~~~l~~ir~kl~~e~~~Te~dFq~~L~~~fasl~DGHt~l~~~s~----- 81 (583)
T 3dor_A 7 ALQDLSFLEHLLQVKYAPKTWKEQYLGWDLVQSSVSAQQKLRTQENPSTSFCQQVLADFIGGLNDFHAGVTFFAI----- 81 (583)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHSCCCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCCSSCEEEESCC-----
T ss_pred HHHHHHHHHHHHhcccCCchhhhccCCcCchhHHHHHHHHHHccCCCCHHHHHHHHHHHHhhcCCCceeEeeccc-----
Confidence 44678888889998998653 23344444555444433 45688999999999999999999999864411
Q ss_pred ccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCH--------------HHHHHHHc
Q 047092 186 IGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDS--------------EAAALKLR 251 (510)
Q Consensus 186 ~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~--------------~~~~~ll~ 251 (510)
.+..+|+.+... .+|+++|+++... . ++++.||+|++|||+++..+.. ..+.+.|.
T Consensus 82 -----~~a~~Pf~vki~-iDG~i~V~dv~~~-~---s~I~vGdEIlsING~pv~e~Lek~~~~~Gsn~~a~~~~Al~~Lt 151 (583)
T 3dor_A 82 -----ESAYLPYTVQKS-SDGRFYFVDIMTF-S---SEIRVGDELLEVDGAPVQDVLATLYGSNHKGTAAEESAALRTLF 151 (583)
T ss_dssp -----CEEECSEEEEEC-TTSCEEEEEECSS-C---CSSCTTCEEEEETTEEHHHHHHTTSCTTCCCCHHHHHHHHHHHT
T ss_pred -----ccccCCeEEEEE-ECCcEEEEecccc-c---cCCCCCCEEEEECCccHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 133456666522 4788888776332 2 2799999999999999876411 11122221
Q ss_pred ------CC--CCCeEEEEEEeCCCCCCCCceEEEEEe----cceee----------e--------------------CCC
Q 047092 252 ------GR--AGTPVTVKVHSGKDVGRESGTREVNIP----RGYIK----------L--------------------SPI 289 (510)
Q Consensus 252 ------g~--~G~~V~l~v~r~~~~~~~g~~~~vtl~----r~~~~----------~--------------------~~v 289 (510)
+. +-..++|++.+++ |..+++++. ++.+. . +|.
T Consensus 152 ~R~~~l~~~~p~~~~tlk~~~~~-----G~~~~v~~pW~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (583)
T 3dor_A 152 SRMASLGHKVPSGRTTLKIRRPF-----GTTREVRVKWRYVPEGVGDLATIAPSIRAPQLQKSMRSFFPKKDDAFHRSSS 226 (583)
T ss_dssp EEEGGGTCCCCCSEEEEEEECTT-----SCEEEEEEECEEECCCSCCHHHHGGGCCCCCC--------------------
T ss_pred hhHHhhccCCCCCceEEEEECCC-----CcEEEEEeeeEEcccccccccccCcchhhccccccchhhccccccccccCcc
Confidence 22 3348899997774 677777652 11000 0 000
Q ss_pred c--ceee------------------------------------ec----------cCC--CCCcCceEEEEecccchhH-
Q 047092 290 S--RTII------------------------------------PH----------RTP--DGHLTKTGYVKLSAFSQTA- 318 (510)
Q Consensus 290 ~--~~~i------------------------------------~~----------~~~--~~~~~~igYi~i~sF~~~~- 318 (510)
. ..++ ++ ... .|+..+||||||++|+...
T Consensus 227 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~g~~~w~~~~~~~a~i~~~~~~~~~~~~ig~~ri~~~~~~~~ 306 (583)
T 3dor_A 227 LFYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSVTDGDGKSHKVGFLRIPTYSWQDM 306 (583)
T ss_dssp -------------------------CCSTTCSSCSCCCSSCCSEECCSSSEEEEEEEECSSSCEEEEEEEECCCBCGGGS
T ss_pred ccccccChHHHHHHHhhhhccccccccCccccccccCCCCCcccccCCceeeEEEeccccCCCcceeeEEEccccCCccc
Confidence 0 0000 00 001 2223489999999998542
Q ss_pred ----------HHHHHHHHHHHHHcCCCEEEEEcCCCC---hhhHHHHHHhhcCCCceEEEEe------------------
Q 047092 319 ----------AADMANTIHELESEGAHSYILDLRNNP---VILRLDVAQIWLDGDETLVNAV------------------ 367 (510)
Q Consensus 319 ----------~~~l~~~l~~l~~~~~~~LIlDLR~N~---~~~~~~la~~fl~~~~~~~~~~------------------ 367 (510)
..+|.+.+.-++ .++++||||+|+|+ ......+++++.+++-..-..+
T Consensus 307 ~~~~~~~~~~~~~f~~~~~~~~-~~~~~liid~~~n~gg~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~a~~~~~~~ 385 (583)
T 3dor_A 307 EDFDPSGPPPWEEFAKIIQVFS-SNTEALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHRMILTQDEVVDALDWLTLL 385 (583)
T ss_dssp TTCCTTSCCHHHHHHHHHHHHH-HHCSEEEEECCSBCCBCHHHHHHHHHTTCSSCEECCEEEECCCHHHHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHhh-cCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCCCcceeeEEecHHHHHHHHHHHHH
Confidence 356666666664 48999999999999 4445668888888641111110
Q ss_pred ----------------------------------------cCCCc---eeEEE-------cCCCCccCCCcEEEEEcCCC
Q 047092 368 ----------------------------------------DREGH---TLPIN-------MVDGHAITHDPLVVLVNEGS 397 (510)
Q Consensus 368 ----------------------------------------~r~g~---~~~~~-------~~~~~~~~~gpvvVLvn~~T 397 (510)
...|. ..+.. .+.+...|++|+|||||++|
T Consensus 386 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~l~~~~~G~~t~s~p~pl~g~~~i~p~~~~~~~gPvvVLVN~~S 465 (583)
T 3dor_A 386 ENVDTNVESRLALGDNMEGYTVDLQVAEYLKSFGRQVLNCWSKGDIELSTPIPLFGFEKIHPHPRVQYSKPICVLINEQD 465 (583)
T ss_dssp TTCCSHHHHHHHHCSEETTEECCHHHHHHHHHHHHHHHHHHHTTCCSSCSCBCGGGCCEECCCSSCCCCSCEEEEECTTB
T ss_pred HhhhhhhhhhhhccccccccCccHHHHHHHHHHHHHHHHHHhCCCceecCCcccccceeeccCCCccCCCCEEEEECCCC
Confidence 00122 01111 12234568999999999999
Q ss_pred CcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcCCCcEE---EEEEEEEEcCCCCcccCCCccccEEecCCCCCCch
Q 047092 398 ASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSAL---FVTVAKYLSPALHDIDQVGITPDVQCTTDMLSSPK 474 (510)
Q Consensus 398 aSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~dg~~l---~vt~~~~~~p~G~~~e~~GV~PDi~V~~~~~~~~~ 474 (510)
|||||+|+++||++++|++||++|+|+++.+..+.|++|+.+ .+|++++++|+|+.+++.||.|||+|+.+..+.
T Consensus 466 ASASEifA~aLKd~~ra~lVGe~T~Gkg~vq~~~~Lpdg~~l~~lklT~a~~~tp~G~~ie~~GV~PDI~V~~t~~dl-- 543 (583)
T 3dor_A 466 FSCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLTGSLAVREHGAFIENIGVEPHIDLPFTANDI-- 543 (583)
T ss_dssp CTHHHHHHHHHHHTTCEEEEESCCCCCCSCEEEECCCCSSCEEEEEEECEEEECTTSCBCTTTCCCCSEECCCCHHHH--
T ss_pred ccHHHHHHHHHHhCCCEEEEeeCCCCCCceeeEEEcCCCCeEEEEEeeeEEEECCCCCCcCCCCcCCcEEeCCCHHHH--
Confidence 999999999999999999999999999999999999999865 599999999999999999999999999876432
Q ss_pred hhhhccccccCCCCCChHHHHHHHHHhhcc
Q 047092 475 ESLLKNKSSVSSLEADSCIMVAEHELDVQE 504 (510)
Q Consensus 475 ~~~~~~~~~~~~~~~D~~l~~A~~~L~~~~ 504 (510)
..++|+|+++|++.|.++-
T Consensus 544 -----------~~GrD~ql~~AV~~lLk~L 562 (583)
T 3dor_A 544 -----------RYKGYSEYLDKVKKLVCQL 562 (583)
T ss_dssp -----------HTTCCHHHHHHHHHHHHHH
T ss_pred -----------HcCCCHHHHHHHHHHHHHH
Confidence 1388999999999986653
No 5
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=100.00 E-value=1e-33 Score=286.31 Aligned_cols=180 Identities=19% Similarity=0.235 Sum_probs=147.3
Q ss_pred CceEEEEecccchh-HHHHHHHHHHHHH---HcCCCEEEEEcCCCC---hhhHHHHHHhhcCCCc--eEEEEecCCCce-
Q 047092 304 TKTGYVKLSAFSQT-AAADMANTIHELE---SEGAHSYILDLRNNP---VILRLDVAQIWLDGDE--TLVNAVDREGHT- 373 (510)
Q Consensus 304 ~~igYi~i~sF~~~-~~~~l~~~l~~l~---~~~~~~LIlDLR~N~---~~~~~~la~~fl~~~~--~~~~~~~r~g~~- 373 (510)
++||||+|++|... ..+++.+++.++. -+++++||||||+|+ +..+..++++|++++. .++++.+|.++.
T Consensus 106 ~~igYi~i~~F~~~~~~~~~~~~l~~~~~~~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~~ 185 (302)
T 1j7x_A 106 GNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNST 185 (302)
T ss_dssp TTEEEEECCCBCCHHHHHHHHHHHHHHTHHHHTTCSEEEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTCC
T ss_pred CCEEEEEEcccCChhhHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCCc
Confidence 57999999999986 4567877774321 158999999999999 6678889999998764 356777777763
Q ss_pred eEEEcCC---CCc-cCCCcEEEEEcCCCCcHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEEcCCC-cEEEEEEEEEEc
Q 047092 374 LPINMVD---GHA-ITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDG-SALFVTVAKYLS 448 (510)
Q Consensus 374 ~~~~~~~---~~~-~~~gpvvVLvn~~TaSaaE~~a~~Lk~~~~a~vVG~~T~G~g~~~~~~~L~dg-~~l~vt~~~~~~ 448 (510)
..+...+ +.. .+++|||||||++|+||||+|+++||+++++++||++|+|++..+..+.|+|| ..+.+++.++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~alq~~~~a~vVG~~T~Gk~~~~~~~~L~~g~~~lt~p~~~~~~ 265 (302)
T 1j7x_A 186 DEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAYLMQSLSRATIIGEITSGNLMHSKVFPFGDTQLSVTVPIINFID 265 (302)
T ss_dssp EEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHHHHHHTTCCEEEESCCCCCCSCEEEEECTTSSEEEEEECEEEEE
T ss_pred eeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHHHHHhCCCEEEEcccCCCCCCCceEEEeCCCcEEEEEEEEEEEC
Confidence 2333222 112 26899999999999999999999999999999999999999999999999997 344444589999
Q ss_pred CCCCcccCCCccccEEecCCCCCCchhhhhccccccCCCCCChHHHHHHHHHhhccc
Q 047092 449 PALHDIDQVGITPDVQCTTDMLSSPKESLLKNKSSVSSLEADSCIMVAEHELDVQES 505 (510)
Q Consensus 449 p~G~~~e~~GV~PDi~V~~~~~~~~~~~~~~~~~~~~~~~~D~~l~~A~~~L~~~~~ 505 (510)
|+|+.+++.||.|||.|+. |++|++|+++|+.+.+
T Consensus 266 p~G~~~~~~Gi~PDi~v~~----------------------d~~L~~A~~~l~~~~~ 300 (302)
T 1j7x_A 266 SNGDYWLGGGVVPDAIVLA----------------------DEALDKAKEIIAFHPP 300 (302)
T ss_dssp TTSCBCCCSCCCCSEECCG----------------------GGHHHHHHHHHHTCCC
T ss_pred CCCCccCCcCcCCCeeeCH----------------------HHHHHHHHHHHHhhhc
Confidence 9999999999999999852 7899999999988764
No 6
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=116.01 Aligned_cols=100 Identities=23% Similarity=0.238 Sum_probs=80.3
Q ss_pred hhcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEcC----CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCC
Q 047092 166 STLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPR----TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDG 240 (510)
Q Consensus 166 ~~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~----~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~ 240 (510)
..+.|+|+.|+++.+++.+.....+...++|+.+..... ...++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 14 ~~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~ 93 (121)
T 2kom_A 14 SENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93 (121)
T ss_dssp -------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTT
T ss_pred ccccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCC
Confidence 456699999999999888877666777889998865311 1468999999999999999 99999999999999999
Q ss_pred CCHHHHHHHHcCC-CCCeEEEEEEeC
Q 047092 241 IDSEAAALKLRGR-AGTPVTVKVHSG 265 (510)
Q Consensus 241 ~~~~~~~~ll~g~-~G~~V~l~v~r~ 265 (510)
++.+++.++++.. .|++|+|+|.|+
T Consensus 94 ~~~~~~~~~l~~~~~g~~v~l~v~R~ 119 (121)
T 2kom_A 94 KSQEEVVSLLRSTKMEGTVSLLVFRQ 119 (121)
T ss_dssp SCHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEEeC
Confidence 8888998888864 589999999986
No 7
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.34 E-value=1.4e-12 Score=111.57 Aligned_cols=95 Identities=23% Similarity=0.302 Sum_probs=81.7
Q ss_pred ceEeeChHHHhhhhccCCCceeeeeEEEEEEcC----CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHH
Q 047092 172 FTRIISPKEYQSFRIGSDGNLQGVGLFISVEPR----TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAA 246 (510)
Q Consensus 172 Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~----~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~ 246 (510)
||.|+++++++.+.....+...|+|+.+..... +..++|..|.+||||+++| |++||+|++|||+++.+++.+++
T Consensus 1 ~s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 1 GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp CCCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHH
T ss_pred CCcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 889999998888777666777899999875421 1569999999999999999 99999999999999999888899
Q ss_pred HHHHcCC-CCCeEEEEEEeCC
Q 047092 247 ALKLRGR-AGTPVTVKVHSGK 266 (510)
Q Consensus 247 ~~ll~g~-~G~~V~l~v~r~~ 266 (510)
.++++.. .|+.+.|+|.|++
T Consensus 81 ~~~l~~~~~g~~v~l~v~R~~ 101 (111)
T 2koj_A 81 VSLLRSTKMEGTVSLLVFRQE 101 (111)
T ss_dssp HHHHHHCCCSSEEEEEEEECC
T ss_pred HHHHHhCCCCCeEEEEEEeCC
Confidence 9988864 5899999999974
No 8
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.26 E-value=8.4e-12 Score=108.02 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=72.0
Q ss_pred cCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCC
Q 047092 168 LGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDG 240 (510)
Q Consensus 168 L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~ 240 (510)
+.|+||.|++++++...... .+. .|+||.+.... .+..++|..|.+||||+++| |++||+|++|||+++.+
T Consensus 12 ~~dp~s~y~~~~~~~~v~l~-k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~ 89 (117)
T 2byg_A 12 DLGTENLYFQSMTVVEIKLF-KGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89 (117)
T ss_dssp --------CEEEEEEEEEEE-CBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTT
T ss_pred CCCCcccccCCCceEEEEEE-eCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC
Confidence 45999999999887765433 233 68999986421 13469999999999999999 99999999999999999
Q ss_pred CCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 241 IDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 241 ~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
++.+++..+++.. |+.|+|+|.|.
T Consensus 90 ~~~~~~~~~l~~~-g~~v~l~v~R~ 113 (117)
T 2byg_A 90 VTHEEAVAILKNT-SEVVYLKVGKP 113 (117)
T ss_dssp CCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred CCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 8889999999854 89999999986
No 9
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.24 E-value=2.5e-12 Score=110.68 Aligned_cols=94 Identities=33% Similarity=0.475 Sum_probs=75.7
Q ss_pred HHHHhHhhcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecC
Q 047092 160 KISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLD 239 (510)
Q Consensus 160 ~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~ 239 (510)
++++|+..| |+|+.+++++... ++|+.+.......+++|..|.+||||+++||++||+|++|||+++.
T Consensus 4 a~~~~~~~l-dp~~~~l~~~~~~-----------~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~ 71 (114)
T 2edz_A 4 GSSGMASTF-NPRECKLSKQEGQ-----------NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD 71 (114)
T ss_dssp CCCCCCCCC-CCEEEEEECCTTC-----------CCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCS
T ss_pred hhhhHhhcC-CCEEEEEeCCCCC-----------cccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECC
Confidence 356788999 9999999775432 2344443222345789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 240 GIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 240 ~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
++..+++.+.++. .|++++|+|.|.+
T Consensus 72 ~~~~~~~~~~l~~-~g~~v~l~v~R~~ 97 (114)
T 2edz_A 72 KEEHAQVVELVRK-SGNSVTLLVLDGD 97 (114)
T ss_dssp SSCHHHHHHHHHH-TCSEEEEEEECHH
T ss_pred CCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 9888888888875 4899999999873
No 10
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=104.98 Aligned_cols=98 Identities=23% Similarity=0.362 Sum_probs=68.3
Q ss_pred hhcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEc-CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCH
Q 047092 166 STLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEP-RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDS 243 (510)
Q Consensus 166 ~~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~ 243 (510)
..+.|+|+.|+++.++...... ....|+||.+.... .+..++|..|.++|||+++| |++||+|++|||+++.+++.
T Consensus 10 ~~~~d~~t~~~~~~~~~~v~l~--~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~ 87 (112)
T 2r4h_A 10 GVDLGTENLYFQSMDFYTVELE--RGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKH 87 (112)
T ss_dssp -------------CCEEEEEEE--CBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred cCCCCCcccccCCCceEEEEEE--cCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 4567999999988877654432 22357898886431 24578999999999999999 99999999999999999888
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCC
Q 047092 244 EAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 244 ~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++..+++. .|+.++|+|.|.+
T Consensus 88 ~~~~~~l~~-~g~~v~l~v~R~~ 109 (112)
T 2r4h_A 88 SRAIELIKN-GGRRVRLFLKRGE 109 (112)
T ss_dssp HHHHHHHHT-TTTEEEEEEECCE
T ss_pred HHHHHHHHc-CCCeEEEEEEeCC
Confidence 888888876 6889999998863
No 11
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.15 E-value=1.2e-10 Score=99.44 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=71.4
Q ss_pred CceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCC-CCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCC
Q 047092 190 GNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGI-HEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDV 268 (510)
Q Consensus 190 g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL-~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~ 268 (510)
+.+.|+|+.+........++|..|.+||||+++|| ++||+|++|||+++..++.+++.++++...|+.+.|++.|++
T Consensus 10 ~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g-- 87 (112)
T 1qau_A 10 RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP-- 87 (112)
T ss_dssp BTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECC--
T ss_pred CCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCC--
Confidence 44678899887642234799999999999999998 999999999999999988889999998778899999999974
Q ss_pred CCCCceEEEEEec
Q 047092 269 GRESGTREVNIPR 281 (510)
Q Consensus 269 ~~~g~~~~vtl~r 281 (510)
+.+++++..
T Consensus 88 ----~~~~~~~~~ 96 (112)
T 1qau_A 88 ----EGFTTHLET 96 (112)
T ss_dssp ----TTSEEEEEE
T ss_pred ----cccceEeee
Confidence 455555543
No 12
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.14 E-value=1.5e-11 Score=103.50 Aligned_cols=93 Identities=28% Similarity=0.444 Sum_probs=75.0
Q ss_pred eEeeChHHHhhhhccCCCceeeeeEEEEEEcC-CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHH
Q 047092 173 TRIISPKEYQSFRIGSDGNLQGVGLFISVEPR-TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKL 250 (510)
Q Consensus 173 t~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~-~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll 250 (510)
+.|+++++++.+.....+...|+||.+..... +..++|..|.++|||+++| |++||+|++|||+++.+++..++..++
T Consensus 2 S~~~~~~~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~ 81 (103)
T 1wfv_A 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI 81 (103)
T ss_dssp CCCCSCCCSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CCCCCccCceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 55677777776655555556678998865421 2378899999999999999 999999999999999999888888888
Q ss_pred cCCCCCeEEEEEEeCC
Q 047092 251 RGRAGTPVTVKVHSGK 266 (510)
Q Consensus 251 ~g~~G~~V~l~v~r~~ 266 (510)
+ ..|+.++|+|.|++
T Consensus 82 ~-~~g~~v~l~v~R~~ 96 (103)
T 1wfv_A 82 K-SGGRRVRLLLKRGT 96 (103)
T ss_dssp H-HHCSEECEEEECTT
T ss_pred H-cCCCeEEEEEEECC
Confidence 7 56889999999874
No 13
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.14 E-value=2e-11 Score=107.14 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=79.1
Q ss_pred CCCceEeeChHHHhh--hhccCC-CceeeeeEEEEEEcC-----CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecC
Q 047092 169 GDPFTRIISPKEYQS--FRIGSD-GNLQGVGLFISVEPR-----TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLD 239 (510)
Q Consensus 169 ~D~Ht~~~~~~~~~~--~~~~~~-g~~~glGi~l~~~~~-----~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~ 239 (510)
.|+|+.|+++.+.+. +..... +...|+||.+..... +..++|..|.+||||+++| |++||+|++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 378999999877653 223333 567789998864321 1368999999999999999 9999999999999999
Q ss_pred CCCHHHHHHHHcC------CCCCeEEEEEEeCC
Q 047092 240 GIDSEAAALKLRG------RAGTPVTVKVHSGK 266 (510)
Q Consensus 240 ~~~~~~~~~ll~g------~~G~~V~l~v~r~~ 266 (510)
+++.+++.++|+. ..|+.|+|+|.|..
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~ 122 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence 9998899998874 35899999999974
No 14
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.13 E-value=2.9e-10 Score=93.24 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=63.7
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.|+|+.+.......+++|..|.++|||+++||++||+|++|||+++.+++.+++.++++.. |..+.|++.|.+
T Consensus 15 ~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 87 (90)
T 2he4_A 15 QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPS 87 (90)
T ss_dssp TBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCC
T ss_pred CCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccC
Confidence 4788888654333579999999999999999999999999999999999888999999875 899999999874
No 15
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=103.06 Aligned_cols=94 Identities=29% Similarity=0.371 Sum_probs=75.8
Q ss_pred CCceEeeChHHHhhhhccCCCceeeeeEEEEEEcCC--CcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHH
Q 047092 170 DPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRT--GHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAA 246 (510)
Q Consensus 170 D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~~--g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~ 246 (510)
|+|+.|+.+.+..... ......++|+.+...... +.++|..|.++|||+++| |++||+|++|||+++..+...++
T Consensus 7 Dp~s~~~~~~~~~~v~--l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 84 (116)
T 2dm8_A 7 GPATCPIVPGQEMIIE--ISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEA 84 (116)
T ss_dssp CSSSCCCCTTSCEEEE--EECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHH
T ss_pred CcccCccCCCCEEEEE--EEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 9999999987764332 234456788887532111 479999999999999999 99999999999999999888888
Q ss_pred HHHHcCCCCCeEEEEEEeCC
Q 047092 247 ALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 247 ~~ll~g~~G~~V~l~v~r~~ 266 (510)
..+++.. ++.++|+|.|.+
T Consensus 85 ~~~l~~~-~~~v~l~v~R~~ 103 (116)
T 2dm8_A 85 ITALRQT-PQKVRLVVYRDE 103 (116)
T ss_dssp HHHHHTC-CSEEEEEEECCS
T ss_pred HHHHHhC-CCeEEEEEEeCC
Confidence 8888764 489999999874
No 16
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.11 E-value=1.7e-10 Score=102.95 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=65.4
Q ss_pred ceeeeeEEEEEE-------------cCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCe
Q 047092 191 NLQGVGLFISVE-------------PRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTP 257 (510)
Q Consensus 191 ~~~glGi~l~~~-------------~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~ 257 (510)
...++|+.+... ....+++|..|.+||||+++||++||+|++|||+++.+++.+++...++...|+.
T Consensus 36 ~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~ 115 (139)
T 2vz5_A 36 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 115 (139)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSE
T ss_pred CcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCE
Confidence 345788887531 1135799999999999999999999999999999999888889999998888999
Q ss_pred EEEEEEeCC
Q 047092 258 VTVKVHSGK 266 (510)
Q Consensus 258 V~l~v~r~~ 266 (510)
++|+|.|++
T Consensus 116 v~l~v~R~g 124 (139)
T 2vz5_A 116 VRLLVTRQS 124 (139)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999999973
No 17
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.11 E-value=6.7e-11 Score=100.46 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=75.2
Q ss_pred ceEeeChHHHhhhhccC--CCceeeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCC
Q 047092 172 FTRIISPKEYQSFRIGS--DGNLQGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGID 242 (510)
Q Consensus 172 Ht~~~~~~~~~~~~~~~--~g~~~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~ 242 (510)
|++ +.+++++.+.... .+...++|+.+.... .+..++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus 3 ~~~-~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 81 (108)
T 2jre_A 3 HGY-SDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81 (108)
T ss_dssp CCC-CSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSC
T ss_pred ccc-ccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 544 3456677666555 567788999886321 13478999999999999999 9999999999999999988
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 243 SEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 243 ~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.+++..+++. .|..++|+|.|.+
T Consensus 82 ~~~~~~~l~~-~g~~v~l~v~R~~ 104 (108)
T 2jre_A 82 QSDVVEVLRN-AGNPVRLLLIRRL 104 (108)
T ss_dssp HHHHHHHHHH-HCSEEEEEEEECC
T ss_pred HHHHHHHHHc-CCCeEEEEEEeCC
Confidence 8888888876 7889999999874
No 18
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.10 E-value=2.3e-10 Score=92.55 Aligned_cols=66 Identities=33% Similarity=0.489 Sum_probs=58.6
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
..++||.+. ++ .|..+++||||+++||+.||+|++|||+++.+++.+++.++|+ ..|++|+|+|..
T Consensus 15 ~g~~Gf~i~----~g--~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 15 TGHVGFIFK----NG--KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp TSCCCEEEE----TT--EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred CCCeEEEEE----CC--EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 456888873 34 3789999999999999999999999999999999999999999 789999999864
No 19
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.10 E-value=5.6e-11 Score=102.90 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=71.4
Q ss_pred CCCceEeeChHHHhh--hhccCCCceeeeeEEEEEEc--CCCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCH
Q 047092 169 GDPFTRIISPKEYQS--FRIGSDGNLQGVGLFISVEP--RTGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDS 243 (510)
Q Consensus 169 ~D~Ht~~~~~~~~~~--~~~~~~g~~~glGi~l~~~~--~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~ 243 (510)
.||||.| .+.++.. .+.-......|+|+.+.-.. ..+.++|..|.+||||+++ ||++||+|++|||+++.+++.
T Consensus 3 ~dP~s~~-~~~~~~~~~~~~~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~ 81 (118)
T 1v6b_A 3 EGAATMF-SPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTL 81 (118)
T ss_dssp CCCCSSS-CHHHHSSCCEEEEEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBH
T ss_pred CCCccee-cccccCCceEEEEEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 3999987 4444321 11100011247888875321 2356999999999999999 899999999999999999988
Q ss_pred HHHHHHHcCC---CCCeEEEEEEeCC
Q 047092 244 EAAALKLRGR---AGTPVTVKVHSGK 266 (510)
Q Consensus 244 ~~~~~ll~g~---~G~~V~l~v~r~~ 266 (510)
+++.++++.. .|++|+|+|.|..
T Consensus 82 ~~~~~~l~~~~~~~g~~v~l~v~r~~ 107 (118)
T 1v6b_A 82 AEAEAALQKAWNQGGDWIDLVVAVCP 107 (118)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence 8888887643 4899999999863
No 20
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.09 E-value=2.4e-10 Score=94.87 Aligned_cols=76 Identities=36% Similarity=0.586 Sum_probs=63.2
Q ss_pred CceeeeeEEEEEEc-------CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEE
Q 047092 190 GNLQGVGLFISVEP-------RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 190 g~~~glGi~l~~~~-------~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v 262 (510)
+...|+||.+.... .+.+++|..|.++|||+++||++||+|++|||+++..+...++...++. .|++++|+|
T Consensus 11 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 89 (97)
T 2w4f_A 11 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 89 (97)
T ss_dssp CBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEE
T ss_pred eCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCeEEEEE
Confidence 44678899886411 2467999999999999999999999999999999999876666666665 789999999
Q ss_pred EeCC
Q 047092 263 HSGK 266 (510)
Q Consensus 263 ~r~~ 266 (510)
.|++
T Consensus 90 ~R~g 93 (97)
T 2w4f_A 90 WRER 93 (97)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 9974
No 21
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=99.97 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCCceEeeChHHHhhhhccCCCceeeeeEEEEEEc----CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCH
Q 047092 169 GDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEP----RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDS 243 (510)
Q Consensus 169 ~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~----~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~ 243 (510)
+|+|+.|+.+...+..... ++...++||.+.... .+..++|..|.+||||+++| |++||+|++|||+++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~v~l~-k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~ 91 (118)
T 3b76_A 13 LGTENLYFQSMHEKVVNIQ-KDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSR 91 (118)
T ss_dssp -----CCCEEEEEEEEEEE-CCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCH
T ss_pred CCccccccCCCCcEEEEEE-eCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence 4778888876665543322 344578899886431 12358999999999999999 99999999999999999989
Q ss_pred HHHHHHHcCCCCCeEEEEEEeC
Q 047092 244 EAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 244 ~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
+++..+++.. +.+|+|+|.|.
T Consensus 92 ~~~~~~l~~~-~~~v~L~v~R~ 112 (118)
T 3b76_A 92 SEAVALLKRT-SSSIVLKALEV 112 (118)
T ss_dssp HHHHHHHHSC-CSEEEEEEEEE
T ss_pred HHHHHHHHcC-CCeEEEEEEEC
Confidence 9999999864 78899999886
No 22
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.08 E-value=1.8e-10 Score=98.18 Aligned_cols=79 Identities=34% Similarity=0.520 Sum_probs=65.7
Q ss_pred cCCCceeeeeEEEEEE-------cCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEE
Q 047092 187 GSDGNLQGVGLFISVE-------PRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVT 259 (510)
Q Consensus 187 ~~~g~~~glGi~l~~~-------~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~ 259 (510)
...+...++||.+... .....++|..|.++|||+++||++||+|++|||+++..+...++...++. .|+.++
T Consensus 20 ~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~ 98 (110)
T 1x5q_A 20 TILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQ 98 (110)
T ss_dssp EEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEE
T ss_pred EEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEE
Confidence 3345578899998631 12467999999999999999999999999999999999887777777765 789999
Q ss_pred EEEEeCC
Q 047092 260 VKVHSGK 266 (510)
Q Consensus 260 l~v~r~~ 266 (510)
|+|.|++
T Consensus 99 l~v~R~g 105 (110)
T 1x5q_A 99 MRVWRES 105 (110)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 9999974
No 23
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.08 E-value=1.6e-10 Score=96.17 Aligned_cols=86 Identities=16% Similarity=0.290 Sum_probs=66.5
Q ss_pred hHHHhhhhccC-CCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCC
Q 047092 178 PKEYQSFRIGS-DGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAG 255 (510)
Q Consensus 178 ~~~~~~~~~~~-~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G 255 (510)
+++++.+.... .+...++|+.+... ..+++|..|.+||||+++| |++||+|++|||+++.++...++..++++. +
T Consensus 4 ~~~~~~~~v~l~~~~~~glG~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~-~ 80 (96)
T 2qkv_A 4 RNSLEKFNVDLMKKAGKELGLSLSPN--EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA-N 80 (96)
T ss_dssp CCCCCCEEEEEECBTTBCCCEEEEEC--SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-S
T ss_pred hHHCceEEEEEEeCCCCCccEEEEeC--CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-C
Confidence 34444444333 23456788877542 4569999999999999999 999999999999999998777777777764 4
Q ss_pred CeEEEEEEeCC
Q 047092 256 TPVTVKVHSGK 266 (510)
Q Consensus 256 ~~V~l~v~r~~ 266 (510)
.++.|+|.|..
T Consensus 81 ~~v~l~v~R~~ 91 (96)
T 2qkv_A 81 GKVSMEVTRPK 91 (96)
T ss_dssp SEEEEEEECCC
T ss_pred CcEEEEEEeCC
Confidence 57999999863
No 24
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.08 E-value=2.5e-10 Score=94.73 Aligned_cols=73 Identities=26% Similarity=0.525 Sum_probs=62.9
Q ss_pred eeeeEEEEEEc---CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP---RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~---~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..++.+++..+++.. |+.+.|+|.|++
T Consensus 14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~ 89 (96)
T 2v90_A 14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPE 89 (96)
T ss_dssp TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCC
T ss_pred CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCC
Confidence 47888886531 11268999999999999999999999999999999998888999999875 999999999974
No 25
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.07 E-value=4e-10 Score=92.54 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=62.8
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... .+..++|..|.++|||+++||++||+|++|||+++..+...++..+++. .|++++|+|.|++
T Consensus 13 ~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g 86 (91)
T 2pkt_A 13 GPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSE 86 (91)
T ss_dssp SCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEEC
T ss_pred CCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 45788776432 2247899999999999999999999999999999999988888888887 8999999999974
No 26
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.4e-11 Score=106.46 Aligned_cols=96 Identities=24% Similarity=0.300 Sum_probs=77.8
Q ss_pred hcCCCceEeeChHHHh-hhhccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHH
Q 047092 167 TLGDPFTRIISPKEYQ-SFRIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEA 245 (510)
Q Consensus 167 ~L~D~Ht~~~~~~~~~-~~~~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~ 245 (510)
.| |+|+.|+++++++ .+.....|.+.|.... ....+..++|..|.++|||+++||++||+|++|||+++..++.++
T Consensus 24 ~l-~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~--~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~ 100 (126)
T 2yuy_A 24 TL-RHFIVYPPESAIQFSYKDEENGNRGGKQRN--RLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQ 100 (126)
T ss_dssp CB-CCCCCCCCSSCCCSCSSSCCCCSCCCTTSC--CCCCCCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHH
T ss_pred ee-cCccccCCHHHHHHHHHhhcCcceeceeee--cccCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 45 8999999998887 6766666777652111 011245688999999999999999999999999999999888899
Q ss_pred HHHHHcCCCCCeEEEEEEeCC
Q 047092 246 AALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 246 ~~~ll~g~~G~~V~l~v~r~~ 266 (510)
+.++++.. |+.|+|+|.|.+
T Consensus 101 ~~~~l~~~-g~~v~l~v~r~~ 120 (126)
T 2yuy_A 101 VIALIQNS-DTTLELSVMPKD 120 (126)
T ss_dssp HHHHHHTC-TTEEEEECCCCC
T ss_pred HHHHHHcC-CCEEEEEEEECC
Confidence 99999864 899999998874
No 27
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.06 E-value=3e-10 Score=99.62 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=62.5
Q ss_pred eeeeeEEEEEEcC----CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecC-CCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEPR----TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLD-GIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~~----~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~-~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..++||.+..... +..++|..|.+||||+++| |++||+|++|||+++. +++.+++..+++. .|+.|+|+|.|.
T Consensus 36 ~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~ 114 (128)
T 2db5_A 36 TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVARE 114 (128)
T ss_dssp SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence 4678888753211 1268999999999999999 9999999999999997 8889999998886 678999999997
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
.
T Consensus 115 ~ 115 (128)
T 2db5_A 115 P 115 (128)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.06 E-value=2.2e-10 Score=99.94 Aligned_cols=95 Identities=24% Similarity=0.413 Sum_probs=67.1
Q ss_pred hcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEE----------cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECC
Q 047092 167 TLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVE----------PRTGHLVVLSCVEDSPAARAG-IHEGDELIEING 235 (510)
Q Consensus 167 ~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~----------~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING 235 (510)
.+.|+|+.|+++..+...+ ....++|+.+... ....+++|..|.+||||++|| |++||+|++|||
T Consensus 14 ~~~d~~s~~~~p~~v~l~k----~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng 89 (123)
T 2iwq_A 14 GTENLYFQSMQPRRVELWR----EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDG 89 (123)
T ss_dssp ---------CCCEEEEECC----CTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETT
T ss_pred ccccCCcccCCCEEEEEEe----cCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC
Confidence 3458899998886655432 2234677776421 112469999999999999999 999999999999
Q ss_pred EecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 236 ERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 236 ~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
+++.+++.+++.+++++. +..++|+|.|..
T Consensus 90 ~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 119 (123)
T 2iwq_A 90 MDLRDASHEQAVEAIRKA-GNPVVFMVQSII 119 (123)
T ss_dssp EECTTCCHHHHHHHHHHC-CSSEEEEEECCC
T ss_pred EECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 999998888999998865 458999998863
No 29
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.06 E-value=6.2e-10 Score=91.33 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=61.0
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.|+|+.+........++|..|.+||||+++||++||+|++|||+++.+++..++..+++...++.+.+.++|+
T Consensus 14 ~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~ 86 (91)
T 1g9o_A 14 NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE 86 (91)
T ss_dssp TBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCC
Confidence 4789888654333589999999999999999999999999999999999888999999876666666666554
No 30
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.04 E-value=4.1e-10 Score=93.83 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=70.9
Q ss_pred CCceEeeChHHHhhhhccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHH
Q 047092 170 DPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALK 249 (510)
Q Consensus 170 D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~l 249 (510)
|||+.+.+... .......|+|+.+......++++|..|.++|||+++||++||+|++|||+++..++.+++.++
T Consensus 3 Dp~~~~~~~~~------~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~ 76 (98)
T 2jxo_A 3 DPFTMLRPRLC------TMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA 76 (98)
T ss_dssp CSSCSSCCEEE------EEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCccCCcEEE------EEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 77777654211 111234578998865422347999999999999999999999999999999999888899999
Q ss_pred HcCCCCCeEEEEEEeC
Q 047092 250 LRGRAGTPVTVKVHSG 265 (510)
Q Consensus 250 l~g~~G~~V~l~v~r~ 265 (510)
++...|+.+.|++.|+
T Consensus 77 l~~~~~~~~~l~v~R~ 92 (98)
T 2jxo_A 77 IRAGGDETKLLVVDRE 92 (98)
T ss_dssp HHTTTTEEEEEECCHH
T ss_pred HHhCCCcEEEEEEECC
Confidence 9887778888988876
No 31
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.04 E-value=3.7e-10 Score=99.79 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=73.8
Q ss_pred hcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEcCCC-------------cEEEEeecCCChhhhcCCCCCCEEEEE
Q 047092 167 TLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEPRTG-------------HLVVLSCVEDSPAARAGIHEGDELIEI 233 (510)
Q Consensus 167 ~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~~~g-------------~l~V~~v~~gsPA~~AGL~~GD~IlaI 233 (510)
.+.|+|+.+.++...-.+. +....++||.+....... +++|..|.+||||+++||++||+|++|
T Consensus 16 ~~~~~~s~~~~~~r~v~l~---r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~V 92 (132)
T 3l4f_D 16 VPRGSGSDYIIKEKTVLLQ---KKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEV 92 (132)
T ss_dssp ---CCSCCCCCCCCEEEEE---CCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEE
T ss_pred ccCCCCCCcCCCCEEEEEE---ECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 3458999988765433322 223457899887642111 489999999999999999999999999
Q ss_pred CCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 234 NGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 234 NG~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
||+++..++.+++..+++. .|..+.|+|.+..
T Consensus 93 ng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~ 124 (132)
T 3l4f_D 93 NGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVT 124 (132)
T ss_dssp SSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred CCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 9999999988899998886 7789999998863
No 32
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.04 E-value=4e-10 Score=92.29 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=62.8
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAAR-AGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~-AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+... .++.++|..|.+||||++ +||++||+|++|||+++.+++.+++.+++++..+ +++|++.|.+
T Consensus 13 ~~lG~~i~~~-~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~ 85 (88)
T 1kwa_A 13 EPMGITLKMN-ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSY 85 (88)
T ss_dssp SCCCEEEECS-CGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCC
T ss_pred CceeEEEEeC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCc
Confidence 5688888642 246799999999999999 8899999999999999998889999999988777 9999998873
No 33
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.04 E-value=1.1e-09 Score=89.20 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=61.7
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.... .+..++|..|.++|||+++||++||+|++|||+++.++..+++..+++.. |+++.|+|.|++
T Consensus 13 ~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g 86 (88)
T 2uzc_A 13 APWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES 86 (88)
T ss_dssp SCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence 46788876422 23468999999999999999999999999999999999878888888765 899999999873
No 34
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.04 E-value=6e-10 Score=91.42 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=60.0
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++|+.+.......+++|..|.+||||+++||++||+|++|||+++.++...++..+++. .|+.+.|+|.|+
T Consensus 19 ~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 90 (91)
T 1m5z_A 19 EDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISRN 90 (91)
T ss_dssp SSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEEC
T ss_pred CCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 467887765323457999999999999999999999999999999999987777777763 588999999875
No 35
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.04 E-value=1e-09 Score=88.78 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=60.0
Q ss_pred eeeeEEEEEE-cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEe
Q 047092 193 QGVGLFISVE-PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHS 264 (510)
Q Consensus 193 ~glGi~l~~~-~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r 264 (510)
.|+|+.+... ..+..++|..|.++|||+++| |++||+|++|||+++.+++.+++.++++.. .|++++|+|.|
T Consensus 11 ~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 11 RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 4688887542 122358999999999999999 999999999999999998888998888864 48899998865
No 36
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.03 E-value=1.7e-10 Score=101.28 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=71.2
Q ss_pred ceeeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 191 NLQGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 191 ~~~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
...++||.+.... .+.+++|..|.+||||+++| |++||+|++|||+++..++.+++.++++. .|+.+.|+|.
T Consensus 25 ~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 103 (129)
T 2dmz_A 25 DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLV 103 (129)
T ss_dssp TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEE
T ss_pred CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 4567888886421 24579999999999999999 99999999999999999988999999987 8899999999
Q ss_pred eCCCCCCCCceEEEEEeccee
Q 047092 264 SGKDVGRESGTREVNIPRGYI 284 (510)
Q Consensus 264 r~~~~~~~g~~~~vtl~r~~~ 284 (510)
|.+.. ..-+..+++++|+.+
T Consensus 104 R~~~~-~~~~~~~~~~~r~~i 123 (129)
T 2dmz_A 104 RRKTS-SSTSPLEPPSDRGTV 123 (129)
T ss_dssp EESSS-SSCCCSSCCCCCCCC
T ss_pred eCCcc-cccCCCCcCccCccc
Confidence 97421 011223445555544
No 37
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.03 E-value=1e-09 Score=92.30 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=63.6
Q ss_pred ceeeeeEEEEEE-------------cCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCe
Q 047092 191 NLQGVGLFISVE-------------PRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTP 257 (510)
Q Consensus 191 ~~~glGi~l~~~-------------~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~ 257 (510)
...++|+.+... ....+++|..|.++|||+++||++||+|++|||+++.+.+.+++...++...|+.
T Consensus 17 ~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~ 96 (104)
T 3sfj_A 17 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 96 (104)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSE
T ss_pred CCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence 345788887621 1245689999999999999999999999999999999988889999998888899
Q ss_pred EEEEEEeC
Q 047092 258 VTVKVHSG 265 (510)
Q Consensus 258 V~l~v~r~ 265 (510)
+.|+|.|.
T Consensus 97 v~l~v~R~ 104 (104)
T 3sfj_A 97 VRLLVTRQ 104 (104)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999873
No 38
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.03 E-value=4.8e-10 Score=91.83 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=60.4
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~ 265 (510)
..++|+.+... ..+++|..|.++|||+++||++||+|++|||+++...+.+++..++.. ..|+++.|+|.|+
T Consensus 16 ~~~lG~~~~~~--~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 88 (90)
T 2eaq_A 16 SLDFGFTIKWD--IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY 88 (90)
T ss_dssp SSCCSEEEEEE--TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCcccEEEEec--CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeC
Confidence 34678877643 567999999999999999999999999999999966667788877765 3688999999886
No 39
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2.1e-10 Score=96.66 Aligned_cols=76 Identities=26% Similarity=0.454 Sum_probs=63.7
Q ss_pred CceeeeeEEEEEEc---CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 190 GNLQGVGLFISVEP---RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 190 g~~~glGi~l~~~~---~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
+...|+||.+.... .+..++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .|+.+.|+|.|+
T Consensus 19 ~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 97 (104)
T 2djt_A 19 RGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRP 97 (104)
T ss_dssp CCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCC
T ss_pred eCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 34568899886421 13568999999999999999 99999999999999999888888888876 688999999887
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 98 g 98 (104)
T 2djt_A 98 L 98 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.03 E-value=1.7e-10 Score=94.84 Aligned_cols=72 Identities=24% Similarity=0.326 Sum_probs=59.5
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
++|+.+........++|..|.++|||+++||++||+|++|||+++.+++.+++.++++.. |+.++|+|.|.+
T Consensus 15 ~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~ 86 (91)
T 2vsp_A 15 GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKK 86 (91)
T ss_dssp BTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC--
T ss_pred cccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCC
Confidence 567776433223467899999999999999999999999999999988889999999876 999999999874
No 41
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.02 E-value=1.2e-09 Score=88.88 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=62.5
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.... ....++|..|.++|||+++||++||+|++|||+++..++.+++.++++... +++.|+|.|++
T Consensus 12 ~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~ 85 (87)
T 2pa1_A 12 APWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRIT 85 (87)
T ss_dssp SCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred CccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecC
Confidence 46788886432 124789999999999999999999999999999999988889999998765 89999999973
No 42
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.02 E-value=3.1e-10 Score=93.99 Aligned_cols=76 Identities=28% Similarity=0.437 Sum_probs=63.9
Q ss_pred CceeeeeEEEEEEc-----CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 190 GNLQGVGLFISVEP-----RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 190 g~~~glGi~l~~~~-----~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
+...++|+.+.... .+..++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|.++.|+|.
T Consensus 12 ~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~ 90 (97)
T 2iwn_A 12 KNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLM 90 (97)
T ss_dssp CBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEE
T ss_pred cCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 44567898886431 14578999999999999999 99999999999999999888888888876 7899999998
Q ss_pred eCC
Q 047092 264 SGK 266 (510)
Q Consensus 264 r~~ 266 (510)
|++
T Consensus 91 r~g 93 (97)
T 2iwn_A 91 RRG 93 (97)
T ss_dssp EEE
T ss_pred eCC
Confidence 863
No 43
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.02 E-value=2.7e-10 Score=99.65 Aligned_cols=87 Identities=17% Similarity=0.334 Sum_probs=72.4
Q ss_pred CCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCC-CCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCC
Q 047092 189 DGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGI-HEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKD 267 (510)
Q Consensus 189 ~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL-~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~ 267 (510)
.+.+.++|+.+........++|..|.+||||+++|| ++||+|++|||+++.+++.+++.+++++..|+.+.|++.|+
T Consensus 16 ~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~-- 93 (127)
T 1b8q_A 16 KRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG-- 93 (127)
T ss_dssp CTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECC--
T ss_pred eCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeC--
Confidence 345568899887542234799999999999999998 99999999999999998888999999888899999999997
Q ss_pred CCCCCceEEEEEec
Q 047092 268 VGRESGTREVNIPR 281 (510)
Q Consensus 268 ~~~~g~~~~vtl~r 281 (510)
++.++++++.
T Consensus 94 ----g~~~~~~~~~ 103 (127)
T 1b8q_A 94 ----PEGFTTHLET 103 (127)
T ss_dssp ----CCSEEECCCC
T ss_pred ----CceEEEEEEE
Confidence 4556665543
No 44
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.01 E-value=7.5e-10 Score=91.95 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=63.1
Q ss_pred eeeeEEEEEEcC-----CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPR-----TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~-----~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+..... +..++|..|.++|||+++| |++||+|++|||+++.+++.+++..+++. .|+.++|+|.|++
T Consensus 14 ~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 92 (97)
T 2jil_A 14 NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDV 92 (97)
T ss_dssp TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEEC
T ss_pred CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 467888764311 3478999999999999999 99999999999999999888899998887 8899999999974
No 45
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.01 E-value=1.1e-09 Score=91.05 Aligned_cols=73 Identities=30% Similarity=0.409 Sum_probs=62.7
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... ..+.++|..|.+||||+++| |++||+|++|||+++.+++.+++..+++ ..|+.++|+|.|.+
T Consensus 16 ~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~ 90 (97)
T 1n7e_A 16 GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQT 90 (97)
T ss_dssp SCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCC
T ss_pred CCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCC
Confidence 45888886431 12578999999999999999 9999999999999999988889988888 57899999999874
No 46
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=1.1e-10 Score=98.35 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=64.4
Q ss_pred CceeeeeEEEEEEc-CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCC-CCeEEEEEEeCC
Q 047092 190 GNLQGVGLFISVEP-RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRA-GTPVTVKVHSGK 266 (510)
Q Consensus 190 g~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~-G~~V~l~v~r~~ 266 (510)
....|+||.+.... .+..++|..|.++|||+++| |++||+|++|||+++..++.+++.++++... |+.|+|+|.|.+
T Consensus 17 ~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 96 (103)
T 1uep_A 17 RMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96 (103)
T ss_dssp SSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred eCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCC
Confidence 34567899885321 23568999999999999999 9999999999999999988889998887654 889999999874
No 47
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.01 E-value=3e-10 Score=98.62 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=60.8
Q ss_pred eeeeeEEEEEEcC----CCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPR----TGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~----~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++||.+..... +..++|..|.+||||+++ ||++||+|++|||+++.+++..++..+++.. +.+++|+|.|.+
T Consensus 35 ~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g 113 (120)
T 2iwo_A 35 TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAGG 113 (120)
T ss_dssp --CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEECCT
T ss_pred CCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 3578888764211 236889999999999999 9999999999999999999888999888864 567999999974
No 48
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.00 E-value=1.4e-09 Score=89.89 Aligned_cols=69 Identities=23% Similarity=0.399 Sum_probs=60.2
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.. +..++|..|.++|||+++||++||+|++|||+++..+...++...++ .|++++|+|.|++
T Consensus 19 ~~~G~~l~~---~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~ 87 (93)
T 2dls_A 19 HGFGFTVSG---DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSS 87 (93)
T ss_dssp SSCCEEEEC---SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCC
T ss_pred CceeEEEeC---CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECC
Confidence 467888753 45789999999999999999999999999999999988777777776 5899999999974
No 49
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.00 E-value=3.6e-09 Score=89.59 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=67.5
Q ss_pred eeeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 192 LQGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 192 ~~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
..++||.+.--. .+..++|..|.+||||+++| |++||+|++|||+++.+++.+++...++. .+.+++|+|.|
T Consensus 12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R 90 (106)
T 4amh_A 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAK 90 (106)
T ss_dssp CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEEC
T ss_pred CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEe
Confidence 456788775321 12368999999999999999 99999999999999999888888888876 46799999999
Q ss_pred CCCCCCCCceEEEEEec
Q 047092 265 GKDVGRESGTREVNIPR 281 (510)
Q Consensus 265 ~~~~~~~g~~~~vtl~r 281 (510)
++. ..+..+++|.+
T Consensus 91 ~~~---~~~~~~v~l~~ 104 (106)
T 4amh_A 91 PGS---GEKIMEIKLIK 104 (106)
T ss_dssp CSS---SCSEEEEEEEC
T ss_pred CCC---CCeEEEEEEec
Confidence 752 13455666654
No 50
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.00 E-value=1.4e-09 Score=88.91 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=61.2
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.... .+..++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. |+.+.|+|.|++
T Consensus 13 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~ 86 (89)
T 2q3g_A 13 APWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAI 86 (89)
T ss_dssp SCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEEC
T ss_pred CcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 56788875432 23468899999999999999999999999999999998888888888754 889999998863
No 51
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.00 E-value=1e-09 Score=89.54 Aligned_cols=72 Identities=28% Similarity=0.429 Sum_probs=58.3
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~ 266 (510)
.|+|+.+.....++.++|..+ ++|||+ +||++||+|++|||+++..++.+++.+.++ ...|+++.|+|.|++
T Consensus 14 ~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 14 MGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88)
T ss_dssp TBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred CceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 578888875433356777775 999999 999999999999999999998888988887 568999999998863
No 52
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.00 E-value=3.3e-10 Score=95.12 Aligned_cols=74 Identities=22% Similarity=0.454 Sum_probs=63.3
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++|+.+.......+++|..|.++|||+++||++||+|++|||+++..+..+++...++. .|+.+.|++.|.+
T Consensus 16 ~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 89 (102)
T 2d90_A 16 SNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE 89 (102)
T ss_dssp SSSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTT
T ss_pred CCCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 3478888875433467999999999999999999999999999999999887888888875 5889999998874
No 53
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.00 E-value=1.5e-10 Score=101.92 Aligned_cols=76 Identities=16% Similarity=0.314 Sum_probs=65.8
Q ss_pred ceeeeeEEEEEEcC----CCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 191 NLQGVGLFISVEPR----TGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 191 ~~~glGi~l~~~~~----~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
...|+||.+..... +..++|..|.+||||+++ ||++||+|++|||+++.+++.+++.+++++..+..|.|+|+|.
T Consensus 38 ~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~ 117 (130)
T 1i16_A 38 MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK 117 (130)
T ss_dssp TSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred CCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeC
Confidence 35689998864211 246899999999999999 8999999999999999999999999999988888999999886
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
.
T Consensus 118 ~ 118 (130)
T 1i16_A 118 S 118 (130)
T ss_dssp S
T ss_pred C
Confidence 3
No 54
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.99 E-value=1.4e-09 Score=89.61 Aligned_cols=71 Identities=32% Similarity=0.501 Sum_probs=61.8
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
++|+.+.....+..++|..|.+||||+++| |++||+|++|||+++.+.+.+++.+++++..+ .++|+|.+.
T Consensus 16 ~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~ 87 (93)
T 3o46_A 16 PLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPG 87 (93)
T ss_dssp CCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC
T ss_pred CccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeC
Confidence 788888653224679999999999999999 99999999999999998889999999987655 899999876
No 55
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.99 E-value=1.7e-09 Score=89.50 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=62.0
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++|+.+.......+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|+.++|++.|++
T Consensus 15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (95)
T 2vwr_A 15 GEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA-SGERVNLTIARPG 89 (95)
T ss_dssp TCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEEES
T ss_pred CCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCC
Confidence 35678887643334579999999999999999 99999999999999999887777777763 5899999999974
No 56
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.98 E-value=1.7e-09 Score=88.85 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=59.9
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.. +..++|..|.+||||+++||++||+|++|||+++.+++..++..+++. .+..+.|+|.|.+
T Consensus 14 ~g~G~~l~~---~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 83 (91)
T 2f5y_A 14 DGFGFTICC---DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMV 83 (91)
T ss_dssp TBTSEEEEC---SSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC
T ss_pred CCccEEEec---CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 467887753 345889999999999999999999999999999999888888888875 4668999999874
No 57
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.98 E-value=1.5e-09 Score=89.64 Aligned_cols=73 Identities=22% Similarity=0.469 Sum_probs=60.1
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+........++|..|.+||||+++||++||+|++|||+++..++.+++..+++. .+..+.+.+.|.+
T Consensus 16 ~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r~~ 88 (95)
T 3r68_A 16 NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE 88 (95)
T ss_dssp TBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEECC
T ss_pred CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEECCc
Confidence 467888765422237999999999999999999999999999999999988899999987 5667777776653
No 58
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.98 E-value=1.6e-09 Score=89.02 Aligned_cols=74 Identities=27% Similarity=0.334 Sum_probs=61.6
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++|+.+.....+.+++|..|.+||||+++| |++||+|++|||+++.+...+++..+++. .|..++|+|.|.+
T Consensus 15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 15 GKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS 89 (92)
T ss_dssp TSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence 35678887643234578999999999999999 99999999999999999877788877764 5778999999873
No 59
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.97 E-value=2.1e-09 Score=89.33 Aligned_cols=73 Identities=21% Similarity=0.365 Sum_probs=61.6
Q ss_pred eeeeeEEEEEEc-C------CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 192 LQGVGLFISVEP-R------TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 192 ~~glGi~l~~~~-~------~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
..++||.+.... . ...++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|++++|+|.
T Consensus 16 ~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~ 94 (98)
T 1ihj_A 16 KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQ 94 (98)
T ss_dssp SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEE
T ss_pred CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEE
Confidence 347888875321 1 1268999999999999999 99999999999999999988888888876 7899999999
Q ss_pred eC
Q 047092 264 SG 265 (510)
Q Consensus 264 r~ 265 (510)
|+
T Consensus 95 R~ 96 (98)
T 1ihj_A 95 TF 96 (98)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 60
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.97 E-value=6.9e-10 Score=97.18 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=64.9
Q ss_pred CCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeC
Q 047092 189 DGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSG 265 (510)
Q Consensus 189 ~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~ 265 (510)
.+.+.|+||.+... +..++|..|.+||||++|| |++||+|++|||+++.+.+.+++.++++. ..|+.|+|+|.|+
T Consensus 34 ~k~~~glG~~i~~~--~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 34 TVGNLGLGLVVIQN--GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp ECCTTCCCCCEEEE--TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred ecCCceEeEEEEcC--CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 34456788877543 5678899999999999999 99999999999999988778999999987 5799999999886
No 61
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.97 E-value=2.5e-10 Score=99.91 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=65.4
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..|+|+.+......++++|..|.++|||+++||++||+|++|||+++..++.+++..+++...|+.+.|++.|++
T Consensus 19 ~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g 93 (128)
T 2kjd_A 19 PSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93 (128)
T ss_dssp SSSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHH
T ss_pred CCcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCC
Confidence 457899887543335799999999999999999999999999999999988889999998888888999999873
No 62
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.97 E-value=1.1e-09 Score=91.39 Aligned_cols=71 Identities=20% Similarity=0.375 Sum_probs=60.3
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++|+.+... .+++++|..|.+||||+++| |++||+|++|||+++.+++.+++.+++++. +.+++|+|.+.
T Consensus 24 ~~lG~~l~~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 24 EPMGICLKLN-EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp SCCSEEEEEC-TTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCeeEEEEeC-CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 4678887653 34679999999999999999 999999999999999987778999988864 66888888764
No 63
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.97 E-value=1.3e-09 Score=95.66 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=62.7
Q ss_pred eeeeEEEEEE-cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCC-CCeEEEEEEeCC
Q 047092 193 QGVGLFISVE-PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRA-GTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~-~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~-G~~V~l~v~r~~ 266 (510)
.|+|+.+... .....++|..|.+||||+++| |++||+|++|||+++.+++.+++.++++... |+.|+|+|.|..
T Consensus 29 ~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 29 RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp SCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred CcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 3788887642 123358999999999999999 9999999999999999988889999888654 899999999974
No 64
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.97 E-value=2.6e-09 Score=90.17 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=61.8
Q ss_pred eeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.|+||.+.... .+.+++|..|.+||||+++| |++||+|++|||+++.+.+..++...++.. |+.+.|+|.|.
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKP 92 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 47888886421 12479999999999999999 999999999999999998888888888754 79999999997
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 93 ~ 93 (105)
T 2awx_A 93 T 93 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.97 E-value=3.2e-09 Score=88.23 Aligned_cols=74 Identities=26% Similarity=0.421 Sum_probs=62.1
Q ss_pred eeeeeEEEEEEcCC--CcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRT--GHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~--g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++|+.+...... ++++|..|.++|||+++| |++||+|++|||+++.++...++...++.. ++.+.|+|.|++
T Consensus 14 ~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 90 (98)
T 2opg_A 14 RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRLTLYRDE 90 (98)
T ss_dssp TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEECS
T ss_pred CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCC
Confidence 35788888653211 579999999999999999 999999999999999999888888888754 489999999974
No 66
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.96 E-value=3.6e-09 Score=96.76 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=68.4
Q ss_pred ceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCC
Q 047092 191 NLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGR 270 (510)
Q Consensus 191 ~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~ 270 (510)
...++|+.+... +.+++|..|.+||||++|||++||+|++|||+++.++..+....+++...|++++|++++.
T Consensus 14 ~~~~lG~~~~~~--~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~----- 86 (166)
T 1w9e_A 14 QDGKIGLRLKSI--DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR----- 86 (166)
T ss_dssp TTSCCSEEEEEE--TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECC-----
T ss_pred CCCcEeEEEEeC--CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcC-----
Confidence 456788888764 5789999999999999999999999999999999999754566777767888999999543
Q ss_pred CCceEEEEEec
Q 047092 271 ESGTREVNIPR 281 (510)
Q Consensus 271 ~g~~~~vtl~r 281 (510)
++.+++++++
T Consensus 87 -~~~~~v~l~~ 96 (166)
T 1w9e_A 87 -PFERTITMHK 96 (166)
T ss_dssp -TTCEEEEEEC
T ss_pred -CCcEEEEEec
Confidence 3667777764
No 67
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.96 E-value=2.3e-09 Score=89.42 Aligned_cols=59 Identities=31% Similarity=0.469 Sum_probs=54.0
Q ss_pred cEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 207 HLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 207 ~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
+++|..|.++|||+++||++||+|++|||+++.+++.+++...++ ..|+.++|++.|.+
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 93 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALE 93 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECC
Confidence 458999999999999999999999999999999888888888887 67899999999974
No 68
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.96 E-value=1.1e-09 Score=92.64 Aligned_cols=73 Identities=32% Similarity=0.426 Sum_probs=60.0
Q ss_pred ceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 191 NLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 191 ~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
...|+++.. .....+++|..|.+||||+++||++||+|++|||+++.++..+++...++ ..|+.++|+|.|.+
T Consensus 13 ~~~G~~l~~--~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 85 (106)
T 3ngh_A 13 QNYGFFLRI--EKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGD 85 (106)
T ss_dssp CCCCCEEEC--CTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHH
T ss_pred CeeCEEEEE--EeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECC
Confidence 344455443 22345688999999999999999999999999999999998888888887 57889999999863
No 69
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.96 E-value=1.9e-09 Score=92.03 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=60.5
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++|+.+.. ...++|..|.+||||++|||++||+|++|||+++..++.+++.++++...++.++|+|.|.
T Consensus 34 ~~~G~~l~~---~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~ 103 (109)
T 2vsv_A 34 GDLGFTLRG---NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSL 103 (109)
T ss_dssp GCCCEEEES---SSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESC
T ss_pred CceeEEEeC---CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEEC
Confidence 467877642 3457899999999999999999999999999999998888999999877777799999886
No 70
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.95 E-value=1.1e-09 Score=91.95 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=61.2
Q ss_pred eeeeEEEEEEcCCC----cEEEEeecCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTG----HLVVLSCVEDSPAAR-AGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g----~l~V~~v~~gsPA~~-AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~ 265 (510)
.++|+.+... ..+ .++|..|.+||||++ +||++||+|++|||+++.+.+.+++.+++++. .|+.|+|+|.|.
T Consensus 21 ~~lG~~i~~~-~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 21 EGLGVALVES-GWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCCCEEEEEC-CCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CccCEEEEeC-CCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 4789988642 122 589999999999999 56999999999999999888889999999864 789999999875
No 71
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=4e-09 Score=88.16 Aligned_cols=72 Identities=24% Similarity=0.288 Sum_probs=61.1
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..+|+.+.... .+..++|..|.++|||+++||++||+|++|||+++..+...++...++. |..++|+|.|++
T Consensus 22 ~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g 94 (100)
T 2eeh_A 22 GRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMG 94 (100)
T ss_dssp SSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECS
T ss_pred CCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECC
Confidence 45788876431 1357999999999999999999999999999999999887888888875 789999999985
No 72
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.95 E-value=1.9e-09 Score=91.52 Aligned_cols=74 Identities=28% Similarity=0.355 Sum_probs=63.4
Q ss_pred eeeeEEEEEEc-----CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-----RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-----~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.|+||.+.... .+..++|..|.++|||+++| |++||+|++|||+++..++.+++.++++...+.+|+|+|.|..
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 47888885421 23568999999999999999 9999999999999999998999999998766779999999863
No 73
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.94 E-value=1.5e-10 Score=97.01 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=64.6
Q ss_pred HhhhhccCCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEE
Q 047092 181 YQSFRIGSDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTV 260 (510)
Q Consensus 181 ~~~~~~~~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l 260 (510)
++.+.....+...++|+.+.. ...++|..|.++|||+++||++||+|++|||+++..++..++.++++.. +.+++|
T Consensus 14 ~~~~~v~l~~~~~g~G~~~~~---~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l 89 (100)
T 1whd_A 14 GEKLQITIRRGKDGFGFTICC---DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIIL 89 (100)
T ss_dssp CEEEEEEEECCSSSSSCBCCC---SSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEE
T ss_pred cceEEEEEECCCCeeeEEEeC---CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEE
Confidence 333333334455678887643 3568899999999999999999999999999999998888888888764 456999
Q ss_pred EEEeCC
Q 047092 261 KVHSGK 266 (510)
Q Consensus 261 ~v~r~~ 266 (510)
+|.|..
T Consensus 90 ~v~R~~ 95 (100)
T 1whd_A 90 LVWRVS 95 (100)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999874
No 74
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.94 E-value=3e-09 Score=88.07 Aligned_cols=73 Identities=27% Similarity=0.523 Sum_probs=61.8
Q ss_pred eeeeEEEEEEc----CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP----RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~----~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... .+..++|..|.++|||+++| |++||+|++|||+++.+++.+++..+++. .|+.++|+|.|.+
T Consensus 16 ~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 93 (96)
T 1d5g_A 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQ 93 (96)
T ss_dssp SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCS
T ss_pred CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 46788876321 13478999999999999999 99999999999999999888888888886 6889999998863
No 75
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.93 E-value=3.5e-09 Score=87.23 Aligned_cols=72 Identities=25% Similarity=0.451 Sum_probs=59.9
Q ss_pred eeeeEEEEEE------cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVE------PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~------~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.|+||.+... ..+.+++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. +..++|+|.|+
T Consensus 14 ~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (94)
T 2fe5_A 14 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKP 92 (94)
T ss_dssp TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECC
T ss_pred CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 4678887632 113478999999999999999 999999999999999998888888888754 45899999886
No 76
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.93 E-value=1.9e-09 Score=90.54 Aligned_cols=60 Identities=30% Similarity=0.498 Sum_probs=53.3
Q ss_pred CcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 206 GHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.+++|..|.+||||+++| |++||+|++|||+++.+++.+++.++++... ..++|+|.|..
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 99 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSII 99 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECC
Confidence 468999999999999999 9999999999999999988889999998764 48999999874
No 77
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.93 E-value=3.7e-09 Score=87.72 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=59.2
Q ss_pred eeeeEEEEEE--------cCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 193 QGVGLFISVE--------PRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 193 ~glGi~l~~~--------~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.++||.+... ..+..++|..|.++|||+++||++||+|++|||+++..++.+++.++++.. +..++|+|.+
T Consensus 16 ~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~ 94 (96)
T 2ego_A 16 QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETLY 94 (96)
T ss_dssp CCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEC
T ss_pred CCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 4677777531 112367999999999999999999999999999999999888999888765 5589999876
Q ss_pred C
Q 047092 265 G 265 (510)
Q Consensus 265 ~ 265 (510)
.
T Consensus 95 ~ 95 (96)
T 2ego_A 95 G 95 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.93 E-value=4.4e-09 Score=88.01 Aligned_cols=73 Identities=27% Similarity=0.435 Sum_probs=62.3
Q ss_pred eeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++||.+.... .+..++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .|+.++|+|.|.
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 96 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 96 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeC
Confidence 67899886521 13578999999999999999 99999999999999999988888888875 488999999886
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 97 ~ 97 (101)
T 2jik_A 97 L 97 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 79
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.92 E-value=4.2e-09 Score=88.46 Aligned_cols=72 Identities=26% Similarity=0.448 Sum_probs=60.7
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.|+|+.+........++|..|.+||||+++| |++||+|++|||+++.+++..++...++. .|..++|++.|.
T Consensus 22 ~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~ 94 (104)
T 3i4w_A 22 TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYK 94 (104)
T ss_dssp TBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEEC
T ss_pred CccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 4678887653223379999999999999999 99999999999999999888888877775 678999999886
No 80
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.92 E-value=4.2e-09 Score=86.35 Aligned_cols=66 Identities=29% Similarity=0.423 Sum_probs=55.6
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.+|+.+. .+++|..|.++|||+++| |++||+|++|||+++.+++.+++.++++... ..+.|+|.|+
T Consensus 16 ~~g~~~~-----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~ 82 (92)
T 3cyy_A 16 EYGLRLA-----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRD 82 (92)
T ss_dssp CCCEEEE-----EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEC-
T ss_pred CCCEEEe-----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeC
Confidence 3466543 458899999999999999 9999999999999999887889988888644 5899999987
No 81
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.92 E-value=3.7e-09 Score=88.59 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=62.2
Q ss_pred eeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.|+||.+.... .+.+++|..|.++|||+++| |++||+|++|||+++...+..++...++. .|+.+.|+|.|.
T Consensus 15 ~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 93 (102)
T 2i1n_A 15 SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRR 93 (102)
T ss_dssp TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 57888886421 13579999999999999999 99999999999999999888888888875 689999999987
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 94 ~ 94 (102)
T 2i1n_A 94 Q 94 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 82
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.92 E-value=3.7e-09 Score=92.28 Aligned_cols=73 Identities=33% Similarity=0.456 Sum_probs=61.8
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~ 266 (510)
.++|+.+... .+.+++|..|.++|||++|||++||+|++|||+++..++.+++...+. ...|+.++|+|.|..
T Consensus 39 ~~lG~~l~~~-~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 112 (124)
T 3tsv_A 39 DSVGLRLAGG-NDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112 (124)
T ss_dssp SCCCEEEEEC-TTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred CceeEEEecC-CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 4678877542 246799999999999999999999999999999999998788887665 478899999999873
No 83
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.91 E-value=2.8e-09 Score=89.05 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=59.9
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC--CCCCeEEEEEEe
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG--RAGTPVTVKVHS 264 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g--~~G~~V~l~v~r 264 (510)
..++|+.+... ++..+|..|.+||||++|||++||+|++|||+++...+.+++...++. ..|..+.|.|..
T Consensus 27 ~~g~G~~l~~~--~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~ 99 (101)
T 3qik_A 27 EEDYGFDIEEK--NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT 99 (101)
T ss_dssp SSSSSEEEEEE--TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcccEEEEcc--CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence 35678888764 677899999999999999999999999999999976668888888875 478888888754
No 84
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.91 E-value=3.8e-09 Score=91.93 Aligned_cols=75 Identities=25% Similarity=0.320 Sum_probs=63.9
Q ss_pred eeeeeEEEEEE-cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVE-PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~-~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~~ 266 (510)
..|+||.+... ..+..++|..|.++|||+++| |++||+|++|||+++..++.+++.++++.. .|+.++|+|.|..
T Consensus 29 ~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 106 (123)
T 1ueq_A 29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY 106 (123)
T ss_dssp TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 45788888632 123459999999999999999 999999999999999998889999999876 4899999999974
No 85
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.91 E-value=2.6e-09 Score=90.99 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=63.8
Q ss_pred eeeeEEEEEEc---CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCC---CCeEEEEEEeC
Q 047092 193 QGVGLFISVEP---RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRA---GTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~---~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~---G~~V~l~v~r~ 265 (510)
.|+||.+.-.. .+..++|..|.++|||+++| |++||+|++|||+++..++.+++.++|++.. +..++|++.|.
T Consensus 25 ~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~ 104 (109)
T 1wi4_A 25 TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104 (109)
T ss_dssp SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECC
T ss_pred CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeC
Confidence 68899886321 12359999999999999999 9999999999999999999999999998766 88999999987
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 105 ~ 105 (109)
T 1wi4_A 105 G 105 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.90 E-value=1.3e-09 Score=91.78 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=59.4
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.... .+..++|..|.++|||+++||++||+|++|||+++..+...++...++.. |+.+.|+|.|.+
T Consensus 15 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g 88 (103)
T 1wf7_A 15 APWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRAS 88 (103)
T ss_dssp SCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCS
T ss_pred CccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 45777775431 12347899999999999999999999999999999998777777777643 789999998873
No 87
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.90 E-value=1.3e-09 Score=95.01 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=64.3
Q ss_pred CCceeeeeEEEEEEcC---CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 189 DGNLQGVGLFISVEPR---TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 189 ~g~~~glGi~l~~~~~---~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.+.+.++|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.. .+++..+++...|+.+.|+|.|
T Consensus 28 ~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R 105 (124)
T 1wh1_A 28 MNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIAR 105 (124)
T ss_dssp SSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEE
T ss_pred cCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEEEEEEEE
Confidence 4556678998865321 2679999999999999999 99999999999999987 5788899988778999999999
Q ss_pred CC
Q 047092 265 GK 266 (510)
Q Consensus 265 ~~ 266 (510)
++
T Consensus 106 ~g 107 (124)
T 1wh1_A 106 PE 107 (124)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 88
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.90 E-value=5.6e-09 Score=88.17 Aligned_cols=73 Identities=29% Similarity=0.415 Sum_probs=62.1
Q ss_pred eeeeEEEEEE----cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVE----PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~----~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+... ..+..++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.+.|+|.|.+
T Consensus 21 ~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 98 (106)
T 3axa_A 21 NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQG 98 (106)
T ss_dssp SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 5678877531 123478999999999999999 99999999999999999888888888875 6899999999974
No 89
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.90 E-value=4.4e-09 Score=89.39 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=61.8
Q ss_pred eeeeEEEEEEc---CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCC--CCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP---RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGR--AGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~---~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~--~G~~V~l~v~r~~ 266 (510)
.++|+.+.... .+..++|..|.+||||+++| |++||+|++|||+++..++.+++.++++.. .+..|+|+|.|..
T Consensus 17 ~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~ 96 (108)
T 3cbz_A 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSG 96 (108)
T ss_dssp CCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCC
T ss_pred CccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCC
Confidence 45788775431 14578999999999999999 999999999999999999889999998765 4556999999874
No 90
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.90 E-value=2.8e-09 Score=88.66 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=62.8
Q ss_pred CCCceeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeCC
Q 047092 188 SDGNLQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGK 266 (510)
Q Consensus 188 ~~g~~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~~ 266 (510)
..+...|+||.+... ..+++|..|.+ +|+++||++||+|++|||+++.+++.+++.+++++. .|++++|+|.|++
T Consensus 16 l~~~~~g~G~~i~~~--~~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 91 (96)
T 1ujv_A 16 IVKGAQGFGFTIADS--PTGQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS 91 (96)
T ss_dssp EECCSSSSSEEEEEE--TTEEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCS
T ss_pred EEeCCCceeEEEEcC--CCCEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence 334567889988643 34688999988 377899999999999999999999889999999876 4999999999974
No 91
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.90 E-value=6e-10 Score=95.33 Aligned_cols=74 Identities=27% Similarity=0.342 Sum_probs=62.0
Q ss_pred eeeeeEEEEEE-------cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 192 LQGVGLFISVE-------PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 192 ~~glGi~l~~~-------~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
..++|+.+... ..+.+++|..|.+||||+++| |++||+|++|||+++.+++..++...++.. |+.++|+|.
T Consensus 14 ~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~ 92 (113)
T 2g5m_B 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-KGRVRFMIG 92 (113)
T ss_dssp SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS-CSSCEEEEE
T ss_pred CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEE
Confidence 35788877651 023578999999999999999 999999999999999998888888888754 889999999
Q ss_pred eCC
Q 047092 264 SGK 266 (510)
Q Consensus 264 r~~ 266 (510)
|.+
T Consensus 93 R~~ 95 (113)
T 2g5m_B 93 RER 95 (113)
T ss_dssp ECC
T ss_pred eCC
Confidence 974
No 92
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=92.89 Aligned_cols=99 Identities=24% Similarity=0.233 Sum_probs=72.5
Q ss_pred HHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEc----CCCcEEEEeecCCChhhhcC-CCCCCE
Q 047092 155 DAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEP----RTGHLVVLSCVEDSPAARAG-IHEGDE 229 (510)
Q Consensus 155 ~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~----~~g~l~V~~v~~gsPA~~AG-L~~GD~ 229 (510)
++|...+..|...- ++++-.+.. +...++||.+.... .+.+++|..|.++|||+++| |++||+
T Consensus 6 ~~~~~~~~~~~~~~-~~~~v~l~k-----------~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~ 73 (117)
T 2o2t_A 6 DEFDQLIKNMAQGR-HVEVFELLK-----------PPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQ 73 (117)
T ss_dssp HHHHHHHHHHHTTS-CEEEEEEEC-----------CSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCE
T ss_pred HHHHHHHHhhccCC-eEEEEEEEE-----------CCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCE
Confidence 45666677665442 444444321 12345677664321 13468999999999999999 999999
Q ss_pred EEEECCEecC-CCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 230 LIEINGERLD-GIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 230 IlaING~~v~-~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
|++|||+++. +++.+++...++. .|+.++|+|.|.+
T Consensus 74 Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 110 (117)
T 2o2t_A 74 ILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGS 110 (117)
T ss_dssp EEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSC
T ss_pred EEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCC
Confidence 9999999998 8888888888876 6889999999974
No 93
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=1.5e-09 Score=91.65 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=62.2
Q ss_pred eeeeEEEEEEc-------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 193 QGVGLFISVEP-------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 193 ~glGi~l~~~~-------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.++||.+.... .+..++|..|.++|||+++| |++||+|++|||+++..++.+++..+++.. |+.++|+|.|
T Consensus 18 ~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R 96 (105)
T 1wha_A 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLER 96 (105)
T ss_dssp TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEE
T ss_pred CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 46888886321 13579999999999999999 999999999999999998888999988765 8889999999
Q ss_pred CC
Q 047092 265 GK 266 (510)
Q Consensus 265 ~~ 266 (510)
..
T Consensus 97 ~~ 98 (105)
T 1wha_A 97 EA 98 (105)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 94
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.89 E-value=3.1e-10 Score=118.15 Aligned_cols=138 Identities=19% Similarity=0.360 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHcCC-CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHhHhhcCCCceEeeChHHHhhhhccCC
Q 047092 111 TVQRTLVEAWGLIRETFVD-PTFNHQDWDSKLQQTMVEIFPLKSADAAYSKISGMLSTLGDPFTRIISPKEYQSFRIGSD 189 (510)
Q Consensus 111 ~~q~~f~e~w~~i~~~Y~~-~~~~~~dWd~~~~~~~~~~~~a~~~~e~~~~i~~ml~~L~D~Ht~~~~~~~~~~~~~~~~ 189 (510)
....++.++|......|.. ..++..+|. ...|..+.+++..++|+.+.+..++..+.......
T Consensus 150 ~i~~ti~qaf~~~y~~~l~~~gi~~~~~~----------------~~~y~~~~~~~~~~~d~~~~~~~~~~~~~V~i~k~ 213 (388)
T 3suz_A 150 LIAQSIGQAFSVAYQEFLRANGINPEDLS----------------QKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKH 213 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTTSC----------------HHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEECCC
T ss_pred HHHHHHHHHHHHHhhhhccccCcCccccc----------------hhhhcccccccccccchhhhhcccccceEEEEECC
Confidence 3446899999998888876 335556673 23456677777777788777777666554433222
Q ss_pred CceeeeeEEEEEEcCCC----cEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEE
Q 047092 190 GNLQGVGLFISVEPRTG----HLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVH 263 (510)
Q Consensus 190 g~~~glGi~l~~~~~~g----~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~ 263 (510)
...++|+.+... ..| .++|..|.+||||+++| |++||+|++|||+++.+++.+++..++++. .+..++|++.
T Consensus 214 -~ge~lG~~i~~~-~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~ 291 (388)
T 3suz_A 214 -KGEILGVVVVES-GWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV 291 (388)
T ss_dssp -SSCCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEE
T ss_pred -CCCceeEEEEec-CCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccc
Confidence 123456655332 122 47899999999999999 999999999999999999777888888875 6778999999
Q ss_pred eCC
Q 047092 264 SGK 266 (510)
Q Consensus 264 r~~ 266 (510)
|.+
T Consensus 292 r~~ 294 (388)
T 3suz_A 292 SCP 294 (388)
T ss_dssp ECC
T ss_pred ccc
Confidence 973
No 95
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.89 E-value=7e-09 Score=84.86 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=60.1
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++||.+.... .+..++|..|.++|||+++ ||++||+|++|||+++.+++..++...++. .|..++|+|.|-
T Consensus 16 ~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~ 89 (90)
T 1qav_A 16 GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK-TGKEVVLEVKYM 89 (90)
T ss_dssp TCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEC
T ss_pred CCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEEe
Confidence 46788876431 2346899999999999999 999999999999999999888888888875 478899998874
No 96
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.89 E-value=2.2e-09 Score=98.88 Aligned_cols=72 Identities=28% Similarity=0.352 Sum_probs=62.4
Q ss_pred eeeeEEEEEE-------cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 193 QGVGLFISVE-------PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 193 ~glGi~l~~~-------~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.|+||.+... ..+..++|..|.+||||+++| |++||+|++|||+++.+++..++..++++ .|..|+|+|.|
T Consensus 91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R 169 (170)
T 3egg_C 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 169 (170)
T ss_dssp TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence 5789988651 023568999999999999999 99999999999999999999999999987 67899999987
Q ss_pred C
Q 047092 265 G 265 (510)
Q Consensus 265 ~ 265 (510)
+
T Consensus 170 ~ 170 (170)
T 3egg_C 170 E 170 (170)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.89 E-value=3.4e-09 Score=86.70 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=60.1
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCC-CCeEEEEEEeC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRA-GTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~-G~~V~l~v~r~ 265 (510)
.|+||.+.... .+..++|..|.++|||+++| |++||+|++|||+++.+.+.+++...++... +.+++|+|.|.
T Consensus 13 ~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 13 TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 46888876421 23458999999999999999 9999999999999999888888888887543 45899999886
No 98
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.89 E-value=5.9e-09 Score=88.54 Aligned_cols=73 Identities=27% Similarity=0.330 Sum_probs=60.9
Q ss_pred eeeeeEEEEEEcCC-------------CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeE
Q 047092 192 LQGVGLFISVEPRT-------------GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPV 258 (510)
Q Consensus 192 ~~glGi~l~~~~~~-------------g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V 258 (510)
..++||.+...... .+++|..|.++|||+++||++||+|++|||+++..+..+++..+++.. |..+
T Consensus 18 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v 96 (109)
T 1q3o_A 18 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNTL 96 (109)
T ss_dssp TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEE
T ss_pred CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEE
Confidence 45789888653211 158999999999999999999999999999999999888888888754 7889
Q ss_pred EEEEEeC
Q 047092 259 TVKVHSG 265 (510)
Q Consensus 259 ~l~v~r~ 265 (510)
.|+|.|.
T Consensus 97 ~l~v~~~ 103 (109)
T 1q3o_A 97 MVKVVMV 103 (109)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999875
No 99
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=1.5e-09 Score=90.86 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=61.2
Q ss_pred CCceeeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 189 DGNLQGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 189 ~g~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.+...++||.+.... .+..++|..|.++|||+++||++||+|++|||+++..+...++...++ .+..+.|+|.|.+
T Consensus 17 ~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~v~R~g 93 (101)
T 1uez_A 17 AKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK--GSKKLVLSVYSAG 93 (101)
T ss_dssp CCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS--SSSSCCEEECCCC
T ss_pred CCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc--CCCeEEEEEEECC
Confidence 345678899886532 134799999999999999999999999999999999998766666664 3567889998874
No 100
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=4.7e-09 Score=86.35 Aligned_cols=70 Identities=33% Similarity=0.499 Sum_probs=60.5
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..++|+.+... ++.++|..|.++|||+++| |++||+|++|||+++ ..+.+++.++++.. +.+++|+|.|.
T Consensus 17 ~~~lG~~i~~~--~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 17 GEHLGVTFRVE--GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp TCCCCEEEEES--SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CCcEeEEEEec--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 35788888653 5789999999999999987 999999999999999 77788999999874 67889999875
No 101
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.88 E-value=5.3e-09 Score=89.60 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=60.9
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcCC-CCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGI-HEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL-~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
++|+.+... +..++|..|.++|||+++|| ++||+|++|||+++.+++.+++.++++... .+++|+|.|.+
T Consensus 38 ~lG~~i~~~--~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 108 (113)
T 1va8_A 38 PLGATVRNE--MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSS 108 (113)
T ss_dssp CCCEEEEEC--SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCC
T ss_pred ceeEEEEeC--CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence 788887653 56799999999999999999 999999999999999988889999887544 58999998874
No 102
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.88 E-value=4.5e-09 Score=88.56 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=61.5
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.... .+..++|..|.++|||+++||++||+|++|||+++..++.+++.++++. |+.++|+|.|..
T Consensus 27 ~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~ 99 (104)
T 1wi2_A 27 AQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFS 99 (104)
T ss_dssp CCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred CCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence 56788876421 2346899999999999999999999999999999999888899998886 788999998863
No 103
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=2.7e-09 Score=88.23 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=60.3
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.... .+..++|..|.++|||+++||++||+|++|||+++..+...++..+++. .|.++.|+|.|++
T Consensus 18 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g 91 (94)
T 2eeg_A 18 SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGP 91 (94)
T ss_dssp SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCS
T ss_pred CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 35788775321 1346889999999999999999999999999999999887788887776 6888999999874
No 104
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.87 E-value=9.2e-09 Score=85.22 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=56.5
Q ss_pred eeeeEEEEEEcCC--CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 193 QGVGLFISVEPRT--GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 193 ~glGi~l~~~~~~--g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.++||.+.....+ .+++|..|.+||||++|||++||+|++|||+++..++.+++.+.+. ...++|+|+.
T Consensus 20 ~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~---~~~l~ltV~~ 90 (94)
T 3kzd_A 20 DTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS---QPSLGLLVRT 90 (94)
T ss_dssp -CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH---SSEEEEEEEE
T ss_pred CCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh---CCeEEEEEEe
Confidence 4678877653222 3699999999999999999999999999999999998889988886 3567777764
No 105
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.87 E-value=8e-09 Score=89.04 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=61.8
Q ss_pred eeeeEEEEEEcCC------CcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRT------GHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~------g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++||.+...... ..++|..|.++|||+++| |++||+|++|||+++..++.+++..+++. .+..++|+|.|+
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 108 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLD 108 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESS
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEEC
Confidence 5788887532111 158899999999999999 99999999999999999988899999986 678899999987
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
.
T Consensus 109 ~ 109 (117)
T 1ujd_A 109 L 109 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 106
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=2e-09 Score=90.66 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=61.3
Q ss_pred eeeEEEEEEcC-CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 194 GVGLFISVEPR-TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 194 glGi~l~~~~~-~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
++|+.+..... +..++|..|.++|||+++||++||+|++|||+++..++.+++.++++.. |+.++|+|.|++
T Consensus 16 ~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g 88 (103)
T 1v5l_A 16 PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAE 88 (103)
T ss_dssp CCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCT
T ss_pred CcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECC
Confidence 56777654321 2368899999999999999999999999999999998888999999876 999999999874
No 107
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.87 E-value=4.5e-09 Score=84.89 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=58.7
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++||.+.... ....++|..|.++|||+++||++||+|++|||+++.+++..++...++. .+.+++|+|.|+
T Consensus 11 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 83 (85)
T 1rgw_A 11 GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKS 83 (85)
T ss_dssp SCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESC
T ss_pred CccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 46788774221 1235889999999999999999999999999999999988888888765 456799999886
No 108
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=2e-09 Score=88.93 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=61.2
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... ....++|..|.++|||+++||++||+|++|||+++..++.+++.+.++... +.++|+|.|++
T Consensus 16 ~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g 89 (94)
T 1vb7_A 16 APWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSS 89 (94)
T ss_dssp SCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCC
T ss_pred CCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECC
Confidence 46777775421 223688999999999999999999999999999999988889999888654 88999999974
No 109
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.86 E-value=5.7e-09 Score=90.10 Aligned_cols=73 Identities=27% Similarity=0.426 Sum_probs=60.6
Q ss_pred eeeeEEEEEEc----CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP----RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~----~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.|+|+.+.... .+.+++|..|.++|||+++| |++||+|++|||+++.+++.+++...++... .+|+|+|.|.+
T Consensus 36 ~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g 113 (117)
T 2fne_A 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSSD 113 (117)
T ss_dssp TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEEECS
T ss_pred CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence 57888875421 02368999999999999999 9999999999999999888889988887544 46999999974
No 110
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.86 E-value=3.4e-09 Score=92.08 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=64.6
Q ss_pred CceeeeeEEEEEE-----cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCC-CCeEEEEE
Q 047092 190 GNLQGVGLFISVE-----PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRA-GTPVTVKV 262 (510)
Q Consensus 190 g~~~glGi~l~~~-----~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~-G~~V~l~v 262 (510)
+...++||.+... .....++|..|.++|||+++| |++||+|++|||+++..++.+++.++++... |+.++|+|
T Consensus 24 ~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v 103 (122)
T 1v5q_A 24 DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103 (122)
T ss_dssp CSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence 4457889988632 013457999999999999999 9999999999999999988889998887655 89999999
Q ss_pred EeCC
Q 047092 263 HSGK 266 (510)
Q Consensus 263 ~r~~ 266 (510)
.|++
T Consensus 104 ~R~~ 107 (122)
T 1v5q_A 104 EFDV 107 (122)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9974
No 111
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.86 E-value=1.4e-09 Score=87.64 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=58.4
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.|+|+.+.. +..++|..|.++|||+++||++||+|++|||+++.+++.+++..+++.. +..++|+|.|+
T Consensus 13 ~g~G~~~~~---~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 81 (83)
T 2kv8_A 13 AGYGFTLSG---QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVIAEG 81 (83)
T ss_dssp SCCSCBCCC---SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CcccEEEEc---CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 567776642 3468899999999999999999999999999999999888888888653 56799999886
No 112
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-09 Score=90.74 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=64.8
Q ss_pred ChHHHhhhhccCCCceeeeeEEEEEEc-CCCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHHcCCC
Q 047092 177 SPKEYQSFRIGSDGNLQGVGLFISVEP-RTGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDSEAAALKLRGRA 254 (510)
Q Consensus 177 ~~~~~~~~~~~~~g~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~ 254 (510)
++++++.+.....+. .++|+.+.... .+..++|..|.++|||+++ ||++||+|++|||+++..+ ..++..+++. .
T Consensus 6 ~~~~~~~~~v~~~~~-~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~-~ 82 (100)
T 2edp_A 6 SGGSFQYVPVQLQGG-APWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG-S 82 (100)
T ss_dssp CCCCCEEEEEECCSC-SCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT-C
T ss_pred CCCCcEEEEEEECCC-CCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh-C
Confidence 344444444433333 46788775421 2335889999999999999 9999999999999999986 5677777775 3
Q ss_pred CCeEEEEEEeCC
Q 047092 255 GTPVTVKVHSGK 266 (510)
Q Consensus 255 G~~V~l~v~r~~ 266 (510)
++.++|+|.|.+
T Consensus 83 ~~~v~l~v~R~~ 94 (100)
T 2edp_A 83 FRILKLIVRRRN 94 (100)
T ss_dssp CSSCEEEEEECC
T ss_pred CCeEEEEEEeCC
Confidence 788999999974
No 113
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.85 E-value=5e-09 Score=88.86 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=59.8
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..|+|+.+... +.+++|..|.+||||+++| |++||+|++|||+++.+....++..++++. +.++.|+|.|..
T Consensus 13 ~~glG~~i~~~--~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 85 (106)
T 2la8_A 13 GKELGLSLSPN--EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRPK 85 (106)
T ss_dssp SSTTCCEEEEC--SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSC-BSCEEEEEEECC
T ss_pred CCccCEEEEeC--CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCC
Confidence 34678776542 4579999999999999999 999999999999999998777887877764 457999999863
No 114
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.85 E-value=8.3e-09 Score=112.89 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=65.4
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGR 270 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~ 270 (510)
..++|+.+... +++++|..|.+||||++|||++||+|++|||++|.. +++.+.+.. ++|++|+|+|.|+
T Consensus 484 ~~~lG~~~~~~--~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~v~R~----- 553 (597)
T 4fgm_A 484 RVNFGAKYKAS--PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIHAFRR----- 553 (597)
T ss_dssp SCCCSEEEEEE--TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEEEEET-----
T ss_pred ccccceEEecc--CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEEEEEC-----
Confidence 35789988654 568999999999999999999999999999999953 355666654 6899999999997
Q ss_pred CCceEEEEEecc
Q 047092 271 ESGTREVNIPRG 282 (510)
Q Consensus 271 ~g~~~~vtl~r~ 282 (510)
|+.++++++..
T Consensus 554 -g~~~~~~v~l~ 564 (597)
T 4fgm_A 554 -DELMTLELTWQ 564 (597)
T ss_dssp -TEEEEEEEECC
T ss_pred -CEEEEEEEEec
Confidence 56777776543
No 115
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=6.5e-09 Score=89.64 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=62.3
Q ss_pred eeeeEEEEEEcC-C-CcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPR-T-GHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~-~-g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+..... + +.++|..|.+||||+++| |++||+|++|||+++.+.+.+++.++++ ..|+.++|+|.|.+
T Consensus 27 ~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 102 (117)
T 1v62_A 27 SALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVP 102 (117)
T ss_dssp CCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBT
T ss_pred CcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECC
Confidence 467887764321 2 349999999999999999 9999999999999999988999999998 47899999999874
No 116
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.85 E-value=4e-09 Score=89.85 Aligned_cols=72 Identities=32% Similarity=0.501 Sum_probs=61.5
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+... .+.+++|..|.++|||+++| |++||+|++|||+++.+++.+++..+++. .|+.+.|+|.|.+
T Consensus 26 ~~lG~~l~~~-~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 98 (111)
T 2dlu_A 26 SGLGFGIVGG-KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDP 98 (111)
T ss_dssp SCCCEEEECC-SSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESC
T ss_pred CccCEEEecc-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence 4678877542 23579999999999999999 99999999999999999888888888875 4789999999874
No 117
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=1.1e-08 Score=86.93 Aligned_cols=73 Identities=26% Similarity=0.371 Sum_probs=61.9
Q ss_pred eeeeEEEEEEc----CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP----RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~----~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.... .+..++|..|.++|||+++| |++||+|++|||+++..++..++...++. .|+.++|+|.|.+
T Consensus 19 ~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 96 (110)
T 1um1_A 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSD 96 (110)
T ss_dssp TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 47888886421 13469999999999999999 99999999999999998888888888876 4899999999973
No 118
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=8.9e-09 Score=84.64 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=56.3
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..++|+.+. +| +|..|.++|||+++||++||+|++|||+++.+.+.+++.++++. .|++++|+|.+.
T Consensus 23 ~~~lG~~~~----~G--~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~p~ 89 (90)
T 1y7n_A 23 RYQLGFSVQ----NG--IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHMKTMPA 89 (90)
T ss_dssp TSCCCEEEE----TT--EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH-CCEEEEEEEECC
T ss_pred ccccCeEec----CC--EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 345677662 34 88999999999999999999999999999988888899998873 588999988753
No 119
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.84 E-value=1.1e-08 Score=88.31 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=61.1
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.|+|+.+.....+.+++|..|.+||||+++| |++||+|++|||+++.++...+....++. .|..+.|++.|..
T Consensus 25 ~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 25 TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 4689988754323579999999999999999 99999999999999999987666666664 5789999998863
No 120
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.83 E-value=1.2e-08 Score=96.20 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=74.2
Q ss_pred cCCCceEeeChHHHhhhhccCCCceeeeeEEEEEEc---CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCC--C
Q 047092 168 LGDPFTRIISPKEYQSFRIGSDGNLQGVGLFISVEP---RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDG--I 241 (510)
Q Consensus 168 L~D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~~---~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~--~ 241 (510)
..|||+.++.+.+....... ....++||.+.... ....++|..|.++|||+++| |++||+|++|||+++.+ +
T Consensus 6 ~~dp~~~~~~~~~~~~v~~~--~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~ 83 (206)
T 3r0h_A 6 PQEPATAEIKPNKKILIELK--VEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSM 83 (206)
T ss_dssp --CTTTCCCCTTSCEEEEEE--CTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGS
T ss_pred CCCCCcCCCCCCCEEEEEEE--eCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCcc
Confidence 45899999887664433222 23467888885321 11368999999999999998 99999999999999999 7
Q ss_pred CHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 242 DSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 242 ~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
...++...++...+..+.|+|.|.+
T Consensus 84 ~~~~~~~~~~~~~~~~v~l~v~R~~ 108 (206)
T 3r0h_A 84 TTLKVHQLFHTTYEKAVTLTVFRAD 108 (206)
T ss_dssp CHHHHHHHHHSCCSSEEEEEEECCS
T ss_pred CHHHHHHHHHhcCCCceEEEEEecc
Confidence 7788888888665566999999974
No 121
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=6.7e-09 Score=87.93 Aligned_cols=73 Identities=27% Similarity=0.369 Sum_probs=61.4
Q ss_pred eeeeEEEEEE-------cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 193 QGVGLFISVE-------PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 193 ~glGi~l~~~-------~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.++||.+... ..+..++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|+.++|+|.|
T Consensus 20 ~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R 98 (107)
T 1wf8_A 20 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIGR 98 (107)
T ss_dssp TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 4788888651 013478999999999999999 99999999999999999888888888875 48999999998
Q ss_pred CC
Q 047092 265 GK 266 (510)
Q Consensus 265 ~~ 266 (510)
..
T Consensus 99 ~~ 100 (107)
T 1wf8_A 99 EK 100 (107)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 122
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.83 E-value=1.4e-08 Score=82.41 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=57.9
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAAR-AGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~-AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
.++|+.+.... .+..++|..|.+||||++ +||++||+|++|||+++.+++.+++..+++. .+.+++|+|.+
T Consensus 14 ~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~~ 86 (87)
T 4e34_A 14 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVY 86 (87)
T ss_dssp BCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 46788775431 234589999999999999 7999999999999999999988888888874 56678888754
No 123
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.4e-08 Score=85.45 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=61.4
Q ss_pred eeeeeEEEEEEc-CCCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEP-RTGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++||.+.... .+..++|..|.+||||+++ ||++||+|++|||+++.+++.+++..+++.. +.+++|++.+..
T Consensus 20 ~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~ 95 (103)
T 2dc2_A 20 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEVVYVA 95 (103)
T ss_dssp SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC-CSEEEEEEEECC
T ss_pred CCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEecC
Confidence 357888886432 1236899999999999995 9999999999999999999889999988854 458999998874
No 124
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.82 E-value=1e-08 Score=90.28 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=62.3
Q ss_pred eeeeeEEEEE--EcC--CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeC
Q 047092 192 LQGVGLFISV--EPR--TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~--~~~--~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~ 265 (510)
..++||.+.. ... ...++|..|.+||||+++| |++||+|++|||+++.+.+.+++.++++.. .|..|+|+|.|+
T Consensus 47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 126 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126 (131)
T ss_dssp CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence 3467877743 111 2268999999999999999 999999999999999998888999988765 789999999987
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 127 g 127 (131)
T 1wfg_A 127 G 127 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.82 E-value=1.5e-08 Score=80.67 Aligned_cols=66 Identities=30% Similarity=0.462 Sum_probs=55.2
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.+|+.+. ++++|..|.++|||+++| |++||+|++|||+++.+++.+++.++++...+ .+.|++.|+
T Consensus 14 ~~g~~~~-----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~ 80 (81)
T 2rcz_A 14 EYGLRLA-----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQRD 80 (81)
T ss_dssp CCCEEEE-----EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC-
T ss_pred CCCEEEe-----CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-eEEEEEEeC
Confidence 3465543 458899999999999999 99999999999999998878899888886544 889999875
No 126
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.81 E-value=8.1e-09 Score=84.37 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=56.4
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
++|+.+. ++++|..|.+||||+++| |++||+|++|||+++.+++.+++.+++++.. .+++|++.+.
T Consensus 14 ~~G~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~-~~v~L~v~~~ 80 (88)
T 3e17_A 14 EYGLRLG-----SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRD 80 (88)
T ss_dssp CCCEEEE-----EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEECCC
T ss_pred CCCEEEe-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEeCC
Confidence 4566653 368999999999999999 9999999999999999998999999998654 4888888765
No 127
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=8.3e-09 Score=88.79 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=59.2
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+... .+.+++|..|.++|||+++||++||+|++|||+++..+...+....+. ..|+.++|+|.|++
T Consensus 30 ~~lG~~~~~~-~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~ 101 (117)
T 1uit_A 30 EPLGISIVSG-EKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG-QQCDTITILAQYNP 101 (117)
T ss_dssp CCCCEEEEEC-TTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEEECCCS
T ss_pred CCccEEEEcc-CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECC
Confidence 4678877643 246799999999999999999999999999999999987665554444 57889999999874
No 128
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.81 E-value=1.5e-08 Score=89.55 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=57.4
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
.+++|..|.+||||+ |||++||+|++|||+++.++ +++...+... +|++++|+|.|+ |+.++++++..
T Consensus 57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~~~ 125 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRN------GKEETTSIKLN 125 (134)
T ss_dssp SCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEET------TEEEEEEEECC
T ss_pred CCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEEC------CEEEEEEEEEc
Confidence 568899999999999 99999999999999999984 5677666544 799999999997 57777777654
No 129
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.81 E-value=1.5e-08 Score=85.69 Aligned_cols=73 Identities=23% Similarity=0.419 Sum_probs=59.2
Q ss_pred eeeeeEEEEEEcC-------CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 192 LQGVGLFISVEPR-------TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 192 ~~glGi~l~~~~~-------~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
..++|+.+..... +..++|..|.++|||+ +||++||+|++|||+++.++........+. ..|++++|+|.|
T Consensus 18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 95 (107)
T 2h2b_A 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KSGKNAKITIRR 95 (107)
T ss_dssp TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEE
T ss_pred CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CCCCEEEEEEEE
Confidence 3578988864311 2479999999999999 999999999999999999987655555554 578899999998
Q ss_pred CC
Q 047092 265 GK 266 (510)
Q Consensus 265 ~~ 266 (510)
++
T Consensus 96 ~~ 97 (107)
T 2h2b_A 96 KK 97 (107)
T ss_dssp ES
T ss_pred CC
Confidence 74
No 130
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.81 E-value=2e-08 Score=85.76 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=58.4
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecce
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRGY 283 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~~ 283 (510)
.++++|..|.++|||+++||++||+|++|||+++.+ .+++...+.. |+.+.|++.|+ ++.++++++...
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~--~~~v~l~v~R~------g~~~~~~v~~~~ 102 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT--QSQLAVQIRRG------RETLTLYVTPEV 102 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHH--CSSEEEEEEET------TEEEEEEECCEE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC--CCeEEEEEEEC------CEEEEEEEEEee
Confidence 456889999999999999999999999999999987 5677777764 68899999997 567777776654
No 131
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.81 E-value=7e-09 Score=90.90 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=60.9
Q ss_pred eeeeeEEEEEEc----------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEE
Q 047092 192 LQGVGLFISVEP----------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTV 260 (510)
Q Consensus 192 ~~glGi~l~~~~----------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l 260 (510)
..++||.+.... ...+++|..|.+||||+++| |++||+|++|||+++.+.+.+++..+++. .+..++|
T Consensus 41 ~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l 119 (128)
T 1nf3_C 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA-NSRNLII 119 (128)
T ss_dssp TSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHH-TTTSEEE
T ss_pred CCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 457788775221 12368999999999999999 99999999999999999889999998874 4567999
Q ss_pred EEEeCC
Q 047092 261 KVHSGK 266 (510)
Q Consensus 261 ~v~r~~ 266 (510)
+|.|.+
T Consensus 120 ~v~r~~ 125 (128)
T 1nf3_C 120 TVRPAN 125 (128)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 999874
No 132
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=1.6e-08 Score=85.61 Aligned_cols=74 Identities=26% Similarity=0.393 Sum_probs=61.7
Q ss_pred eeeeeEEEEEEc---------CCCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEE
Q 047092 192 LQGVGLFISVEP---------RTGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVK 261 (510)
Q Consensus 192 ~~glGi~l~~~~---------~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~ 261 (510)
..++||.+.... .+..++|..|.++|||+++ ||++||+|++|||+++..++..++...++. .+..+.|+
T Consensus 18 ~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~ 96 (107)
T 1uhp_A 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQ 96 (107)
T ss_dssp SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEE
T ss_pred CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEE
Confidence 457888885311 1357899999999999999 999999999999999999888888888875 57789999
Q ss_pred EEeCC
Q 047092 262 VHSGK 266 (510)
Q Consensus 262 v~r~~ 266 (510)
|.|..
T Consensus 97 v~R~~ 101 (107)
T 1uhp_A 97 VLRRT 101 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98874
No 133
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.80 E-value=2.9e-08 Score=83.08 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=56.7
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
.++++|..|.++|||+. ||++||+|++|||+++..+ +++...+.. ..|+.+.|++.|+ ++.++++++.
T Consensus 6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~~ 74 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHG------DKNEQADIKL 74 (100)
T ss_dssp CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEET------TEEEEEEEEC
T ss_pred CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEEC------CEEEEEEEEE
Confidence 46788999999999995 9999999999999999884 577777765 4789999999997 4666666654
No 134
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.80 E-value=3.9e-09 Score=91.18 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=63.5
Q ss_pred ceeeeeEEEEEEc--CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 191 NLQGVGLFISVEP--RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 191 ~~~glGi~l~~~~--~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
...++||.+.... .+..++|..|.++|||+++| |++||+|++|||+++..++..++...++...+..+.+++.|.+
T Consensus 25 ~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~ 103 (119)
T 1x6d_A 25 EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103 (119)
T ss_dssp TTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECC
T ss_pred CCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 3567888886431 13468999999999999999 9999999999999999988889999888777777888888873
No 135
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.80 E-value=5e-09 Score=91.22 Aligned_cols=74 Identities=26% Similarity=0.379 Sum_probs=61.3
Q ss_pred eeeeeEEEEEEcC--CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPR--TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~--~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++||.+..... ...++|..|.++|||+++| |++||+|++|||+++.++...++...++.. +..+.|+|.|.+
T Consensus 35 ~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 111 (124)
T 2daz_A 35 KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-PSKVKLVFIRNE 111 (124)
T ss_dssp SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-CSEEEEEEEECT
T ss_pred CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 3578888864311 2478999999999999999 999999999999999998888888877654 569999999974
No 136
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.80 E-value=3e-09 Score=91.64 Aligned_cols=91 Identities=16% Similarity=0.312 Sum_probs=67.5
Q ss_pred eEeeChHHHhhhhccCC-CceeeeeEEEEEEcC-------CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHH
Q 047092 173 TRIISPKEYQSFRIGSD-GNLQGVGLFISVEPR-------TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSE 244 (510)
Q Consensus 173 t~~~~~~~~~~~~~~~~-g~~~glGi~l~~~~~-------~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~ 244 (510)
+.+++..+++.+..... +...++||.+..... ...++|..|.++|||+ +||++||+|++|||+++..++..
T Consensus 5 s~~~~~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~ 83 (117)
T 2csj_A 5 SSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHS 83 (117)
T ss_dssp SCCCSCEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHH
T ss_pred CCCcccccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHH
Confidence 34444444443333222 334688998864211 2358999999999997 99999999999999999998888
Q ss_pred HHHHHHcCCCCCeEEEEEEeC
Q 047092 245 AAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 245 ~~~~ll~g~~G~~V~l~v~r~ 265 (510)
++...++. .|+.+.|+|.|.
T Consensus 84 ~~~~~l~~-~~~~v~l~v~R~ 103 (117)
T 2csj_A 84 FAVQQLRK-SGKIAAIVVKRP 103 (117)
T ss_dssp HHHHHHHH-SCSEEEEEEEEE
T ss_pred HHHHHHhc-CCCeEEEEEEEC
Confidence 88888875 588999999886
No 137
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.80 E-value=1.6e-08 Score=83.57 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=58.7
Q ss_pred eeeEEEEEEc---------CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 194 GVGLFISVEP---------RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 194 glGi~l~~~~---------~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
++||.+.... .+..++|..|.++|||++ ||++||+|++|||+++..+...++...++ ..|+.++|+|.|
T Consensus 14 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R 91 (95)
T 1mfg_A 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 91 (95)
T ss_dssp SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEE
T ss_pred CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 6788876421 234799999999999999 99999999999999999988777777776 468899999988
Q ss_pred C
Q 047092 265 G 265 (510)
Q Consensus 265 ~ 265 (510)
+
T Consensus 92 ~ 92 (95)
T 1mfg_A 92 E 92 (95)
T ss_dssp E
T ss_pred C
Confidence 6
No 138
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.79 E-value=1.9e-08 Score=84.95 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=59.7
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcC--CCCCCEEEEECCEecCCCCHHHHHHHHcCCC---CCeEEEEEEeC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAG--IHEGDELIEINGERLDGIDSEAAALKLRGRA---GTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG--L~~GD~IlaING~~v~~~~~~~~~~ll~g~~---G~~V~l~v~r~ 265 (510)
.++||.+.... ....++|..|.++|||+++| |++||+|++|||+++..+...++..+++... +..+.|+|.|+
T Consensus 29 ~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 29 GRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp SCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred CCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 56788775421 12358899999999999999 9999999999999999998888888887643 35888988763
No 139
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.79 E-value=9.5e-09 Score=85.13 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=58.0
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
..+++|..|.++|||++ ||++||+|++|||+++.. .+++...+... .|+.++|+|.|+ ++.++++++..
T Consensus 4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~~~ 73 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRD------RKQHEAELVLK 73 (94)
T ss_dssp CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEET------TEEEEEEECCC
T ss_pred CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEEC------CEEEEEEEEEe
Confidence 35688899999999998 999999999999999987 45777777654 799999999997 56777777654
No 140
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.79 E-value=2e-08 Score=83.28 Aligned_cols=66 Identities=27% Similarity=0.317 Sum_probs=52.6
Q ss_pred EEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 209 VVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 209 ~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
+|..|.++|||++|||++||+|++|||+++..+ +++...+... .++.+.|+|.|++. +..++++|+
T Consensus 5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~----~~~~~~~l~ 71 (95)
T 3id1_A 5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGS----DQRRDVKLD 71 (95)
T ss_dssp BEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTC----CCCEEEEEE
T ss_pred EEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCC----CceEEEEEE
Confidence 578999999999999999999999999999985 5777766544 34899999999852 344555543
No 141
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.79 E-value=2e-08 Score=83.05 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=63.0
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~ 265 (510)
.++|+.+... ..+..+|.++.+||||++.| |+.||+|++|||+++.+++.++++++|+. +.|.+++|++.++
T Consensus 16 ~~LG~tI~~~-g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p 89 (95)
T 3gge_A 16 DSLGLTITDN-GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89 (95)
T ss_dssp SCCCEEEECS-SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred CCceEEEEcC-CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECc
Confidence 5788888632 35678999999999999998 99999999999999999999999999985 5678899998876
No 142
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.4e-08 Score=87.83 Aligned_cols=73 Identities=27% Similarity=0.435 Sum_probs=61.8
Q ss_pred eeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++||.+.... .+..++|..|.++|||+++| |++||+|++|||+++..+...++...++. .|+.++|+|.|.
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 106 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 106 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 67899886421 14579999999999999999 99999999999999999988888888865 378899999886
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
.
T Consensus 107 ~ 107 (120)
T 2eno_A 107 L 107 (120)
T ss_dssp E
T ss_pred C
Confidence 3
No 143
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.78 E-value=1.9e-08 Score=87.58 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=60.6
Q ss_pred eeeeeEEEEEEc-CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEP-RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..++|+.+.... ....++|..|.+||||+++| |++||+|++|||+++.+++.+++..++++.. ..++|++.|.
T Consensus 30 ~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~ 104 (125)
T 3hpk_A 30 QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL 104 (125)
T ss_dssp TSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEEEE
T ss_pred CCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence 457888875421 12458999999999999999 9999999999999999988889999998744 4699999885
No 144
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.78 E-value=1.2e-08 Score=86.15 Aligned_cols=57 Identities=25% Similarity=0.429 Sum_probs=52.1
Q ss_pred EEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 209 VVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 209 ~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
+|..|.++|||+++||++||+|++|||+++..++.+++...++. .|+.+.|++.|..
T Consensus 46 ~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 102 (107)
T 3qe1_A 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA-GEKELILTVLSVE 102 (107)
T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-CSSEEEEEEECSS
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCC
Confidence 58999999999999999999999999999998888899888873 5899999999874
No 145
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=3.8e-09 Score=89.16 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=60.8
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++|+.+.....+..++|..|.++|||+++||++||+|++|||+++..++..++...++. .+..+.|++.|.+
T Consensus 18 ~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 91 (106)
T 2eei_A 18 GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKE 91 (106)
T ss_dssp SSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTT
T ss_pred CCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCc
Confidence 3467777754323456889999999999999999999999999999999888888877763 4778999998874
No 146
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.78 E-value=2.9e-09 Score=87.84 Aligned_cols=66 Identities=26% Similarity=0.402 Sum_probs=55.4
Q ss_pred EEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCC-CCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGR-AGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 208 l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~-~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
++|..|.++|||++ ||++||+|++|||+++.. .+++...+... +|++++|+|.|+ ++.++++++..
T Consensus 3 v~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~~~ 69 (91)
T 2kjp_A 3 IYASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIERE------EKEKRVTLTLK 69 (91)
T ss_dssp SSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESS------SCEECCCEECC
T ss_pred eEEEEECCCChHHH-cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEEC------CEEEEEEEEEe
Confidence 56778999999999 999999999999999987 46888888765 799999999997 46666666544
No 147
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.78 E-value=5.4e-09 Score=88.04 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCceEeeChHHHhhhhccCCCceeeeeEEEEEE--------cCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCC
Q 047092 170 DPFTRIISPKEYQSFRIGSDGNLQGVGLFISVE--------PRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGI 241 (510)
Q Consensus 170 D~Ht~~~~~~~~~~~~~~~~g~~~glGi~l~~~--------~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~ 241 (510)
|+|+.+.+.... +. .....++||.+... .....++|..|.++|||+++||++||+|++|||+++..+
T Consensus 9 ~p~s~~~~~~v~--l~---~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~ 83 (104)
T 2z17_A 9 SDFSWSQRKLVT--VE---KQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGF 83 (104)
T ss_dssp --CCCSCCCEEE--EE---CCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTC
T ss_pred ccCCCCcceEEE--EE---eCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCC
Confidence 777777654322 11 11223568877641 113478999999999999999999999999999999988
Q ss_pred CHHHHHHHHcCCCCCeEEEEE
Q 047092 242 DSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 242 ~~~~~~~ll~g~~G~~V~l~v 262 (510)
+.+++.++++...+ +++|+|
T Consensus 84 ~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 84 TYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp CHHHHHHHHHHTTT-EEEEEC
T ss_pred CHHHHHHHHHhCCC-cEEEEE
Confidence 88999999987644 777765
No 148
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.3e-08 Score=83.66 Aligned_cols=73 Identities=26% Similarity=0.444 Sum_probs=60.3
Q ss_pred eeeeEEEEEE-cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVE-PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~-~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+... ..+..++|..|.++|||+++| |++||+|++|||+++..++.+++..+++.. +..++|+|.|..
T Consensus 16 ~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 90 (93)
T 2dkr_A 16 EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSVKLVVRSGP 90 (93)
T ss_dssp TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence 5788888632 124578999999999999996 999999999999999998888888888753 468999998863
No 149
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.77 E-value=1.3e-08 Score=89.06 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=58.8
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... ...+++|..|.+||||+++||++||+|++|||+++..+...++.+.++. +..+.|+|.|.+
T Consensus 32 ~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g 104 (128)
T 1uf1_A 32 RSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLILTVKDVG 104 (128)
T ss_dssp CCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEEEEEECCS
T ss_pred CccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEECC
Confidence 35677775321 1236899999999999999999999999999999999887778887764 579999999974
No 150
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.76 E-value=2.1e-08 Score=86.03 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=58.4
Q ss_pred eeeeeEEEEEEc-CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEP-RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..++|+.+.... .+..++|..|.+||||+++| |++||+|++|||+++.+.+.+++.+++++.. ..++|+|.+.
T Consensus 35 ~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~ 109 (114)
T 2gzv_A 35 QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL 109 (114)
T ss_dssp TSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECC
T ss_pred CCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence 345888886431 12358999999999999999 9999999999999998777889988887544 4688888764
No 151
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.76 E-value=1.4e-08 Score=83.07 Aligned_cols=66 Identities=17% Similarity=0.344 Sum_probs=55.7
Q ss_pred EEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 208 l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
++|..|.++|||+++||++||+|++|||+++..+ +++...+....|+.+.|++.|+ |+.++++++.
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~------g~~~~~~v~~ 71 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQ------GSPLSLTLIP 71 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEET------TEEEEEEECC
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEEC------CeEEEEEEEE
Confidence 4577889999999999999999999999999974 5777777766788999999997 5667777664
No 152
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.75 E-value=1.3e-08 Score=87.27 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=61.2
Q ss_pred eeeeEEEEEEc---CCC-----cEEEEeecCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 193 QGVGLFISVEP---RTG-----HLVVLSCVEDSPAAR-AGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 193 ~glGi~l~~~~---~~g-----~l~V~~v~~gsPA~~-AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
.++||.+.... ..+ .++|..|.++|||++ +||++||+|++|||+++..+..+++.++++. .|+.+.|+|.
T Consensus 22 ~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~ 100 (114)
T 1uew_A 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRII 100 (114)
T ss_dssp SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEEC
T ss_pred CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 47888885311 112 458999999999999 9999999999999999999888899998886 7899999999
Q ss_pred eCC
Q 047092 264 SGK 266 (510)
Q Consensus 264 r~~ 266 (510)
|.+
T Consensus 101 r~~ 103 (114)
T 1uew_A 101 PQE 103 (114)
T ss_dssp CCS
T ss_pred eCC
Confidence 874
No 153
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.75 E-value=9.3e-09 Score=88.95 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=60.4
Q ss_pred eeeEEEEEE--cCCCcEEEEeecC--CChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 194 GVGLFISVE--PRTGHLVVLSCVE--DSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 194 glGi~l~~~--~~~g~l~V~~v~~--gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
|+++.+... .....++|..|.+ +|||++|||++||+|++|||+++..+..+++...+... |+.+.|+|.|++
T Consensus 30 G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g 105 (118)
T 2yub_A 30 GFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDP 105 (118)
T ss_dssp SSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECS
T ss_pred eEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECC
Confidence 566654321 1235789999999 99999999999999999999999998778999999877 899999999974
No 154
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.75 E-value=7.2e-09 Score=87.80 Aligned_cols=73 Identities=29% Similarity=0.544 Sum_probs=60.2
Q ss_pred eeeeEEEEEE---------cCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEE
Q 047092 193 QGVGLFISVE---------PRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 193 ~glGi~l~~~---------~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v 262 (510)
.++||.+... ..+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.++|+|
T Consensus 20 ~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v 98 (108)
T 1q7x_A 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLL 98 (108)
T ss_dssp CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 4678877510 013578999999999999999 99999999999999997776788887775 489999999
Q ss_pred EeCC
Q 047092 263 HSGK 266 (510)
Q Consensus 263 ~r~~ 266 (510)
.|++
T Consensus 99 ~R~~ 102 (108)
T 1q7x_A 99 EKGQ 102 (108)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 9974
No 155
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.4e-08 Score=87.29 Aligned_cols=70 Identities=26% Similarity=0.311 Sum_probs=57.3
Q ss_pred eeeEEEEEEcCC--CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 194 GVGLFISVEPRT--GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 194 glGi~l~~~~~~--g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
++||.+...... .+++|..|.++|||+++||++||+|++|||+++..+..+++.+++++ ..+.|+|.|..
T Consensus 30 ~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 30 TYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred ccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 456666432112 46899999999999999999999999999999999887888888875 48999998863
No 156
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.73 E-value=3.2e-08 Score=92.76 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=62.4
Q ss_pred eeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... .+.+++|..|.+||||+++||++||+|++|||+++.+++.+++..+++. |..+.|+|.|.+
T Consensus 96 ~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g 168 (192)
T 3k1r_A 96 EGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIG 168 (192)
T ss_dssp TCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECC
T ss_pred CceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECC
Confidence 47888875321 2347899999999999999999999999999999999888999999986 899999999974
No 157
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.73 E-value=1.7e-08 Score=84.73 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=59.2
Q ss_pred eeeEEEEEEc---------CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 194 GVGLFISVEP---------RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 194 glGi~l~~~~---------~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
++||.+.... .+.+++|..|.++|||++ ||++||+|++|||+++..+...++...++ ..|+.++|+|.|
T Consensus 22 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 99 (103)
T 1n7t_A 22 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 99 (103)
T ss_dssp CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEEC
T ss_pred CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 6788876421 245799999999999999 99999999999999999988888887776 468899999988
Q ss_pred C
Q 047092 265 G 265 (510)
Q Consensus 265 ~ 265 (510)
+
T Consensus 100 ~ 100 (103)
T 1n7t_A 100 E 100 (103)
T ss_dssp C
T ss_pred c
Confidence 6
No 158
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.72 E-value=1.6e-08 Score=87.30 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=61.4
Q ss_pred ceeeeeEEEEEEc-CCCcEEEEeecCCChhhhc--CCCCCCEEEEECCEecCCCCHHHHHHHHcCCC---CCeEEEEEEe
Q 047092 191 NLQGVGLFISVEP-RTGHLVVLSCVEDSPAARA--GIHEGDELIEINGERLDGIDSEAAALKLRGRA---GTPVTVKVHS 264 (510)
Q Consensus 191 ~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~A--GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~---G~~V~l~v~r 264 (510)
...++||.+.... .+..++|..|.++|||+++ ||++||+|++|||+++..++..++..+++... +..+.|+|.|
T Consensus 25 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R 104 (119)
T 2cs5_A 25 ENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP 104 (119)
T ss_dssp SSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred CCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEc
Confidence 3456888886432 1225899999999999999 99999999999999999988888888886543 3589999988
Q ss_pred CC
Q 047092 265 GK 266 (510)
Q Consensus 265 ~~ 266 (510)
+.
T Consensus 105 ~~ 106 (119)
T 2cs5_A 105 NA 106 (119)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 159
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.70 E-value=8.9e-09 Score=88.08 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=59.3
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++||.+.. ...++|..|.++|||+++||++||+|++|||+++..++.+++.++++...++.+.|+|.+.
T Consensus 26 ~~~G~~l~~---~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~ 95 (111)
T 1vae_A 26 GDLGFTLRG---NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95 (111)
T ss_dssp SCCSCCEES---SSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred CcccEEEeC---CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence 456776632 3467889999999999999999999999999999977788999999877777899999875
No 160
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.69 E-value=5.4e-08 Score=82.94 Aligned_cols=69 Identities=23% Similarity=0.412 Sum_probs=57.2
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecce
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRGY 283 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~~ 283 (510)
..+++|..|.++|||+++||++||+|++|||+++.. ..++...+. .|+.+.|++.|+ ++.++++++...
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~--~g~~v~l~v~R~------g~~~~~~v~~~~ 102 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVD--SSELQEAVL--TESPLLLEVRRG------NDDLLFSIAPEV 102 (112)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHH--HCSSEEEEEEET------TEEEEEEECCEE
T ss_pred CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHh--CCCeEEEEEEEC------CEEEEEEEEEee
Confidence 356889999999999999999999999999999987 457776663 578899999997 567777776543
No 161
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.69 E-value=8.8e-08 Score=97.02 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=67.1
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEe-CCCCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHS-GKDVG 269 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r-~~~~~ 269 (510)
...+|+.+.......+++|..|.+||||+++||++||+|++|||+++..+ .++...+.. .+|++++|+|.| +
T Consensus 228 ~~~lGi~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~---- 301 (324)
T 1y8t_A 228 HASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS---- 301 (324)
T ss_dssp CEECCEEEESCSSSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSS----
T ss_pred ccccceEeeeccCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC----
Confidence 56788887643234678999999999999999999999999999999984 577777754 679999999999 6
Q ss_pred CCCceEEEEEecc
Q 047092 270 RESGTREVNIPRG 282 (510)
Q Consensus 270 ~~g~~~~vtl~r~ 282 (510)
|+.++++++..
T Consensus 302 --g~~~~~~v~~~ 312 (324)
T 1y8t_A 302 --GGSRTVQVTLG 312 (324)
T ss_dssp --CCEEEEEEECE
T ss_pred --CCEEEEEEEEc
Confidence 56666666543
No 162
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.69 E-value=9.6e-08 Score=81.76 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=60.0
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~ 266 (510)
..|+||.+... ....+|..+++ |++.+||++||+|++|||+++.+++.++++++|+. +.|+.|+|+|.|.+
T Consensus 22 ~~G~GFsI~~~--~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g 93 (113)
T 3soe_A 22 PKGFGFAIADS--PTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGG 93 (113)
T ss_dssp TTBSSEEEEEE--TTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESS
T ss_pred CCcccEEEeCC--CCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence 35889998543 23455888887 68889999999999999999999999999999985 56999999999985
No 163
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.69 E-value=3.4e-08 Score=84.92 Aligned_cols=74 Identities=26% Similarity=0.428 Sum_probs=61.3
Q ss_pred eeeeeEEEEEEc----------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEE
Q 047092 192 LQGVGLFISVEP----------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTV 260 (510)
Q Consensus 192 ~~glGi~l~~~~----------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l 260 (510)
..++||.+.... ....++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .|+.++|
T Consensus 26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l 104 (117)
T 2ehr_A 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVF 104 (117)
T ss_dssp SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEE
T ss_pred CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 356788774221 12479999999999999999 99999999999999999888888888875 5889999
Q ss_pred EEEeCC
Q 047092 261 KVHSGK 266 (510)
Q Consensus 261 ~v~r~~ 266 (510)
+|.|..
T Consensus 105 ~v~r~~ 110 (117)
T 2ehr_A 105 IVQSLS 110 (117)
T ss_dssp EECCBS
T ss_pred EEEECC
Confidence 998864
No 164
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.69 E-value=1.5e-07 Score=76.62 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=49.4
Q ss_pred EEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEE
Q 047092 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNI 279 (510)
Q Consensus 208 l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl 279 (510)
+.|..+.++|||+++||++||+|++|||+++.++ +++.+.+.. ..|+.++|++.|+ |+.+++++
T Consensus 21 ~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~------g~~~~~~v 85 (87)
T 2i6v_A 21 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERD------GQQHDVYI 85 (87)
T ss_dssp EEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEET------TEEEEEEE
T ss_pred EEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEE
Confidence 4456666667779999999999999999999985 466666654 3688999999997 45555544
No 165
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.69 E-value=2.1e-08 Score=84.44 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=60.5
Q ss_pred eeeeEEEEEEcCC-Cc-EEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCC----CCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRT-GH-LVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGR----AGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~-g~-l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~----~G~~V~l~v~r~ 265 (510)
.++||.+.-.... .. .+|..|.+++||+++| |++||+|++|||+++..++.+++.++|+.. .++.+++.+.|.
T Consensus 17 ~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~ 96 (103)
T 1ufx_A 17 ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEF 96 (103)
T ss_dssp SSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCC
T ss_pred CcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEc
Confidence 5789988643111 12 4899999999999999 999999999999999999889999888753 677888888886
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 97 ~ 97 (103)
T 1ufx_A 97 N 97 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 166
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.13 E-value=2.1e-09 Score=92.10 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=63.1
Q ss_pred CCCceEeeChHHHhhhhc-c-CCCceeeeeEEEEEEc-CCCcEEEEeecCCChhhh-cCCCCCCEEEEECCEecCCCCHH
Q 047092 169 GDPFTRIISPKEYQSFRI-G-SDGNLQGVGLFISVEP-RTGHLVVLSCVEDSPAAR-AGIHEGDELIEINGERLDGIDSE 244 (510)
Q Consensus 169 ~D~Ht~~~~~~~~~~~~~-~-~~g~~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~-AGL~~GD~IlaING~~v~~~~~~ 244 (510)
+|+|+.++....+...+. . ......++||.+.... .+.+++|..|.+||||++ +||++||+|++|||+++.+.+.+
T Consensus 13 ~~~~~~~me~~~~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~ 92 (112)
T 2lob_A 13 GHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK 92 (112)
Confidence 356666654333222110 0 1222357888775321 124689999999999999 99999999999999999887777
Q ss_pred HHHHHHcCCCCCeEEEEEE
Q 047092 245 AAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 245 ~~~~ll~g~~G~~V~l~v~ 263 (510)
++..+++.. +.+++|+|.
T Consensus 93 ~~~~~l~~~-~~~v~l~V~ 110 (112)
T 2lob_A 93 EAVTILSQQ-RGEIEFEVV 110 (112)
Confidence 888877643 344666654
No 167
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.68 E-value=1.3e-08 Score=86.68 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=61.9
Q ss_pred eeeeeEEEEEEc----------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEE
Q 047092 192 LQGVGLFISVEP----------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTV 260 (510)
Q Consensus 192 ~~glGi~l~~~~----------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l 260 (510)
..++||.+.... ....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|+.++|
T Consensus 20 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~l 98 (111)
T 1uju_A 20 GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTV 98 (111)
T ss_dssp TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEE
T ss_pred CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 357888876321 12358999999999999999 99999999999999999888899998876 6889999
Q ss_pred EEEeCC
Q 047092 261 KVHSGK 266 (510)
Q Consensus 261 ~v~r~~ 266 (510)
+|.|..
T Consensus 99 ~v~r~~ 104 (111)
T 1uju_A 99 LVCDGF 104 (111)
T ss_dssp CCCCCC
T ss_pred EEEECC
Confidence 998863
No 168
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.67 E-value=1.1e-07 Score=88.44 Aligned_cols=73 Identities=22% Similarity=0.329 Sum_probs=60.8
Q ss_pred eeeeEEEEEEcC------CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPR------TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~------~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++||.+..... +..++|..|.++|||+++| |++||+|++|||+++..++..++...++. .|+.++|++.|.
T Consensus 16 ~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r~ 94 (196)
T 3gsl_A 16 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRR 94 (196)
T ss_dssp TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEEE
T ss_pred CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEec
Confidence 467888754211 3468999999999999999 99999999999999999988777777764 588999999886
Q ss_pred C
Q 047092 266 K 266 (510)
Q Consensus 266 ~ 266 (510)
+
T Consensus 95 ~ 95 (196)
T 3gsl_A 95 K 95 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 169
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.67 E-value=1.7e-09 Score=103.48 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=69.8
Q ss_pred eeeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeE-EEEEEeCCCCCC
Q 047092 192 LQGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPV-TVKVHSGKDVGR 270 (510)
Q Consensus 192 ~~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V-~l~v~r~~~~~~ 270 (510)
..|+||.+.......+++|..|.+||||+++||++||+|++|||++|.+++.+++..++++. |..+ .|+|.|.
T Consensus 19 ~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~----- 92 (216)
T 2krg_A 19 PSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRE----- 92 (216)
T ss_dssp SSSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHH-----
T ss_pred CCCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEEC-----
Confidence 45789988643222378999999999999999999999999999999977778888888765 7888 8998886
Q ss_pred CCceE--EEEEecceeeeCCC
Q 047092 271 ESGTR--EVNIPRGYIKLSPI 289 (510)
Q Consensus 271 ~g~~~--~vtl~r~~~~~~~v 289 (510)
+..+ ++++++..+....+
T Consensus 93 -g~~~~~~v~v~p~~~~~~~v 112 (216)
T 2krg_A 93 -TDEFFKKCRVIPSQEHLNGP 112 (216)
T ss_dssp -HHHHHHHHTCCCCGGGGSSC
T ss_pred -CEEEEEEEEEEEeeeecCCC
Confidence 3444 55666555444333
No 170
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.66 E-value=7.7e-08 Score=90.24 Aligned_cols=76 Identities=25% Similarity=0.352 Sum_probs=63.9
Q ss_pred ceeeeeEEEEEEc-----CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCC-CCeEEEEEE
Q 047092 191 NLQGVGLFISVEP-----RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRA-GTPVTVKVH 263 (510)
Q Consensus 191 ~~~glGi~l~~~~-----~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~-G~~V~l~v~ 263 (510)
...|+||.+.... ....++|..|.+||||++|| |++||+|++|||+++.+.+.+++..+++... |++++|++.
T Consensus 16 ~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~ 95 (196)
T 1p1d_A 16 PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE 95 (196)
T ss_dssp TTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEE
T ss_pred CCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEE
Confidence 3567898886531 12358899999999999999 9999999999999999877788988888655 899999999
Q ss_pred eCC
Q 047092 264 SGK 266 (510)
Q Consensus 264 r~~ 266 (510)
|.+
T Consensus 96 R~~ 98 (196)
T 1p1d_A 96 FDV 98 (196)
T ss_dssp ECS
T ss_pred ecC
Confidence 975
No 171
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.65 E-value=1.2e-07 Score=88.63 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=52.0
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
+.+++|..|.+||||++ ||++||+|++|||+++......++...++.. +..|.|+|.|
T Consensus 23 ~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 80 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVR 80 (195)
T ss_dssp CCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEE
T ss_pred CCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 45799999999999999 9999999999999999999888888888754 4599999999
No 172
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.64 E-value=1.9e-08 Score=85.77 Aligned_cols=72 Identities=28% Similarity=0.419 Sum_probs=60.2
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
.++|+.+........++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .+..+.|+|.|.
T Consensus 26 ~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~ 98 (113)
T 1um7_A 26 TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-AGQSVTIVAQYR 98 (113)
T ss_dssp SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS-CCSEEEEEEECC
T ss_pred CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEEC
Confidence 5678877543223578899999999999999 99999999999999999987788877774 678999999886
No 173
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.63 E-value=1.4e-07 Score=79.58 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=48.2
Q ss_pred EEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEE
Q 047092 208 LVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNI 279 (510)
Q Consensus 208 l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl 279 (510)
+.|....++|||+++||++||+|++|||+++.++. ++...+.. ..|+.++|+|.|+ |+.+++++
T Consensus 39 ~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~------g~~~~~~v 103 (105)
T 2i4s_A 39 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERD------GQQHDVYI 103 (105)
T ss_dssp EEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEET------TEEEEEEE
T ss_pred EEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEEC------CEEEEEEE
Confidence 34555556667799999999999999999999975 45454442 4688999999997 45555544
No 174
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=9.2e-09 Score=85.42 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=58.5
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++||.+.. ...++|..|.++|||+ +||++||+|++|||+++......++..+++. .|+.++|+|.|+.
T Consensus 21 ~~~G~~l~~---~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 21 QDYGFHISE---SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp CSCSBCCCS---SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CcccEEEec---CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 356776632 4568899999999996 9999999999999999999888888888875 6899999999974
No 175
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.62 E-value=8.3e-08 Score=99.81 Aligned_cols=72 Identities=33% Similarity=0.479 Sum_probs=64.5
Q ss_pred eeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCC
Q 047092 194 GVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266 (510)
Q Consensus 194 glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~ 266 (510)
++|+.+... .+++++|..|.+||||+++||++||+|++|||.++.+++.+++..++++ ..|+.++|++.|++
T Consensus 20 ~lG~~i~gg-~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 20 SVGLRLAGG-NDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SCCEEEEEE-TTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred ceeEEEEec-CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 588887643 3578999999999999999999999999999999999989999999987 78999999999874
No 176
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.62 E-value=1.9e-07 Score=94.36 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=60.1
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
..+++|..|.++|||++|||++||+|++|||+++.. .+++...++. .+|++++|+|.|+ |+.++++++..
T Consensus 243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~~~ 313 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRD------DKQLTLQVTIQ 313 (318)
T ss_dssp CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESS------SCEEEEEEECE
T ss_pred CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEEEc
Confidence 357899999999999999999999999999999988 4678888876 6899999999997 56777776543
No 177
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.58 E-value=8.5e-08 Score=81.92 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=58.7
Q ss_pred eeeeeEEEEEEc-CCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 192 LQGVGLFISVEP-RTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 192 ~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
..++|+.+.... ....++|..|.++|||+++||++||+|++|||+++..+...++...++. +..+.|+|.|+
T Consensus 26 ~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~r~ 98 (114)
T 1x5n_A 26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS--SRSLTISIVAA 98 (114)
T ss_dssp SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH--CSSEEEEECSS
T ss_pred CCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEcC
Confidence 457888886431 2357999999999999999999999999999999999876667777753 35789999886
No 178
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.57 E-value=2.3e-07 Score=87.18 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=61.4
Q ss_pred eeeeeEEEEEEc-CCCcEEEEeecCCChhhhc-CCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEP-RTGHLVVLSCVEDSPAARA-GIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~A-GL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..++|+.+.... ....++|..|.+||||+++ ||++||+|++|||+++.+++..++..+++. .|+++.|++.|+.
T Consensus 18 ~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 18 GTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERVVLEVEYEL 93 (200)
T ss_dssp TCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence 456888875421 2346889999999999999 999999999999999999988888888764 4789999999863
No 179
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.53 E-value=2.2e-07 Score=87.55 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=60.8
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+... ..+++|..|.+||||+++| |++||+|++|||+++.+++.+++..+++. .+..+.|+|.|..
T Consensus 125 ~~lG~~~~~~--~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~~ 196 (206)
T 3r0h_A 125 KELGLSLSPN--EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRPK 196 (206)
T ss_dssp CCCCEEEEEC--SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CccCeEEEcC--CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 4678877642 4568999999999999999 99999999999999999888888888876 4678999999864
No 180
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.52 E-value=1.2e-07 Score=93.11 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=63.1
Q ss_pred eeeeeEEEEEEc-CCCcEEEEeecCCChhhh-cCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 192 LQGVGLFISVEP-RTGHLVVLSCVEDSPAAR-AGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 192 ~~glGi~l~~~~-~~g~l~V~~v~~gsPA~~-AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..|+||.+.... .+..++|..|.+||||++ +||++||+|++|||+++.+++.++++.++++. |..|+|+|.|..
T Consensus 88 ~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~~ 163 (263)
T 1z87_A 88 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYMK 163 (263)
T ss_dssp TCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECCS
T ss_pred CCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeCc
Confidence 467888886432 134689999999999999 79999999999999999999999999999864 778999999974
No 181
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.50 E-value=3.2e-07 Score=93.82 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=59.4
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
.+++|..|.+||||++|||++||+|++|||+++.. ..++...+.. .+|++++|+|.|+ |+.++++++..
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~l~ 332 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRN------GKPLEVEVTLD 332 (345)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEET------TEEEEEEEECE
T ss_pred ceEEEEEeccCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEEEc
Confidence 56899999999999999999999999999999997 4678877765 5899999999997 56777776543
No 182
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.48 E-value=3e-07 Score=97.32 Aligned_cols=73 Identities=33% Similarity=0.476 Sum_probs=63.5
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~ 266 (510)
.++|+.+... .+.+++|..|.+||||+++||++||+|++|||+++.+++.+++..++++ ..|+.|+|+|.|++
T Consensus 11 ~~lG~~i~gg-~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 11 DSVGLRLAGG-NDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp SSCCEEEEEE-TTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CccceEEEcc-CcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 4677776543 3467999999999999999999999999999999999989999999886 58999999999964
No 183
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.47 E-value=4.7e-07 Score=84.13 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=60.3
Q ss_pred eeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 194 GVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 194 glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
++|+.+.... .+..++|..|.+||||+++| |++||+|++|||+++..++.+++...++. .+..+.|+|.|++
T Consensus 112 ~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 190 (196)
T 3gsl_A 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPS 190 (196)
T ss_dssp BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEES
T ss_pred CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCCC
Confidence 5777775321 12358999999999999999 99999999999999999888899998875 5789999999974
No 184
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.45 E-value=2.5e-07 Score=103.59 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=68.4
Q ss_pred eeeeeEEEEEEc------CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEe
Q 047092 192 LQGVGLFISVEP------RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHS 264 (510)
Q Consensus 192 ~~glGi~l~~~~------~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r 264 (510)
..|+||.+.-.. .+.+++|..|.+||||+++| |+.||+|++|||+++.+++..++..++++ .|+.|+|+|.|
T Consensus 69 ~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R 147 (721)
T 2xkx_A 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR 147 (721)
T ss_pred CCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEe
Confidence 358898885311 13568999999999999999 99999999999999999988888888875 58899999998
Q ss_pred CCCCCCCCceEEEEEec
Q 047092 265 GKDVGRESGTREVNIPR 281 (510)
Q Consensus 265 ~~~~~~~g~~~~vtl~r 281 (510)
.+.. ..+..+++|.+
T Consensus 148 ~~~~--~~~~~~v~l~k 162 (721)
T 2xkx_A 148 RKPP--AEKVMEIKLIK 162 (721)
T ss_pred cccc--cccceeeeeee
Confidence 7421 01345667664
No 185
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.44 E-value=7.6e-07 Score=77.65 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=54.1
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
..+++|..|.++|||+++ |++||+|++|||+++..+ +++...+. ...|+.++|+| |+ ++ .++++.
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~------g~-~~v~l~ 89 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQ------GT-FHLKTG 89 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TT------EE-EEEECC
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-EC------CE-EEEEEe
Confidence 457889999999999999 999999999999999984 57777776 46789999999 86 44 555554
No 186
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.42 E-value=4.2e-07 Score=86.29 Aligned_cols=70 Identities=30% Similarity=0.398 Sum_probs=56.0
Q ss_pred CcEEEEeecCCChhhhcCCCCC-CEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEe
Q 047092 206 GHLVVLSCVEDSPAARAGIHEG-DELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIP 280 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~G-D~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~ 280 (510)
.+++|..|.++|||++|||++| |+|++|||+++..+.. ....++....|++++|++.|.+ .++.++++++
T Consensus 16 ~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~-~~~~~~~~~~g~~v~l~v~R~~----~~~~~~v~l~ 86 (209)
T 3rle_A 16 EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDND-TLKDLLKANVEKPVKMLIYSSK----TLELRETSVT 86 (209)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSS-HHHHHHHHTTTSCEEEEEEETT----TCCEEEEEEC
T ss_pred CEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHH-HHHHHHhcCCCCEEEEEEEecC----CceEEEEEEc
Confidence 4588999999999999999999 9999999999998752 1224444567899999999974 2566777764
No 187
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.42 E-value=7.9e-07 Score=83.42 Aligned_cols=71 Identities=27% Similarity=0.424 Sum_probs=60.5
Q ss_pred eeeEEEEEEcC-----CCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 194 GVGLFISVEPR-----TGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 194 glGi~l~~~~~-----~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
++|+.+..... ...++|..|.++|||+++| |++||+|++|||+++.+++.+++.++++. .|..+.|+|.|+
T Consensus 118 ~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 194 (200)
T 2qt5_A 118 TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYD 194 (200)
T ss_dssp BCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEE
T ss_pred CeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 46776653211 2468999999999999999 99999999999999998888999999987 889999999987
No 188
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.39 E-value=1.6e-06 Score=91.76 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=57.5
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
.+++|..|.++|||++|||++||+|++|||+++..+ +++...+.. ..|++++|+|.|+ ++.++++++.
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~------g~~~~~~v~l 350 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERD------NKPLTLSAVV 350 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEET------TEEEEEEEEC
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEEE
Confidence 578999999999999999999999999999999985 567666654 6799999999997 4666666543
No 189
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.37 E-value=1.1e-06 Score=88.96 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=57.7
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
.+++|..|.++|||+++||++||+|++|||+++.. .+++.+.++. ++++.|+|.|+ ++.++++++..
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~l~~~l~~--~~~v~l~v~R~------g~~~~~~v~~~ 322 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT--QSQLAVQIRRG------RETLTLYVTPE 322 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHTT--CSSEEEEEEET------TEEEEEEECCE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHhC--CCeEEEEEEEC------CEEEEEEEEEe
Confidence 57899999999999999999999999999999988 4678888864 68999999997 57777777643
No 190
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.35 E-value=1.2e-06 Score=83.16 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=62.6
Q ss_pred eeeeEEEEEEc----CCCcEEEEeecCCChhhhcCCCC-CCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCC
Q 047092 193 QGVGLFISVEP----RTGHLVVLSCVEDSPAARAGIHE-GDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKD 267 (510)
Q Consensus 193 ~glGi~l~~~~----~~g~l~V~~v~~gsPA~~AGL~~-GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~ 267 (510)
..+|+.+.... ...+++|..|.++|||++|||++ ||+|++|||+ +..+. ++.+.++...|+++.|+|.|.+.
T Consensus 95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~--~l~~~l~~~~g~~v~l~v~r~~~ 171 (209)
T 3rle_A 95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESE--DLFSLIETHEAKPLKLYVYNTDT 171 (209)
T ss_dssp SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSS--CHHHHHHHTTTSCEEEEEEETTT
T ss_pred CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHH--HHHHHHHhCCCCeEEEEEEECCc
Confidence 34677665321 12568999999999999999999 9999999998 77753 66666765688999999998741
Q ss_pred CCCCCceEEEEEecc
Q 047092 268 VGRESGTREVNIPRG 282 (510)
Q Consensus 268 ~~~~g~~~~vtl~r~ 282 (510)
.+.+++++++.
T Consensus 172 ----~~~~~v~l~p~ 182 (209)
T 3rle_A 172 ----DNCREVIITPN 182 (209)
T ss_dssp ----TEEEEEEECCC
T ss_pred ----eEEEEEEEEec
Confidence 24577777653
No 191
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.33 E-value=9.2e-07 Score=90.49 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=58.6
Q ss_pred CcEEEEeecCCChhhhcCCCC-----------CCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCCCCCCCCc
Q 047092 206 GHLVVLSCVEDSPAARAGIHE-----------GDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGKDVGRESG 273 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~-----------GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~~~~~~g~ 273 (510)
.+++|..|.++|||++|||++ ||+|++|||+++..+ +++...+. ..+|++|+|+|.|+ |+
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~------g~ 322 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRG------DH 322 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECS------SS
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEEC------CE
Confidence 468899999999999999999 999999999999986 47777775 46799999999997 56
Q ss_pred eEEEEEecc
Q 047092 274 TREVNIPRG 282 (510)
Q Consensus 274 ~~~vtl~r~ 282 (510)
.++++++..
T Consensus 323 ~~~~~v~l~ 331 (348)
T 3qo6_A 323 KEKISVTLE 331 (348)
T ss_dssp EEEEEEECE
T ss_pred EEEEEEEEc
Confidence 677766543
No 192
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.32 E-value=7.7e-07 Score=83.34 Aligned_cols=73 Identities=29% Similarity=0.368 Sum_probs=60.7
Q ss_pred eeeeEEEEEEc---CCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEP---RTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~---~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.... ....++|..|.++|||+++| |++||+|++|||+++.+++.+++.++++.. |..+.|+|.|++
T Consensus 119 ~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 119 VELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 35677764311 03468999999999999999 999999999999999998888999988866 899999999863
No 193
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.18 E-value=4.6e-06 Score=87.87 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=56.5
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHc-CCCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLR-GRAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~-g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
.+++|..|.++|||+++||++||+|++|||+++..+ +++...+. ...|++++|+|.|+ ++.++++++.
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~l 331 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRN------GKPLEVEVTL 331 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEEE
Confidence 568999999999999999999999999999999985 46666554 35789999999997 4666666543
No 194
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.07 E-value=4.9e-07 Score=91.88 Aligned_cols=67 Identities=18% Similarity=0.359 Sum_probs=0.0
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEecc
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPRG 282 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r~ 282 (510)
.+++|..|.+||||++|||++||+|++|||+++..+ +++...++. |++++|+|.|+ |+.++++++..
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~------g~~~~~~v~p~ 320 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIKR--ESTLNMVVRRG------NEDIMITVIPE 320 (332)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEEC------CEEEEEEEEEe
Confidence 468889999999999999999999999999999875 366666653 78899999997 46677776654
No 195
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.06 E-value=9.5e-06 Score=85.85 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=55.7
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEE
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNI 279 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl 279 (510)
.+++|..|.+||||+++||++||+|++|||+++.+ .+++.+.++. .+..+.|+|.|+ ++.+.+++
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~--~~~~~~~l~~-~~~~v~l~v~R~------g~~~~v~l 450 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTD--VKSLQTIAQE-KKKELLVQVLRG------PGSMYLLV 450 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHTTS-SCSCEEEEEEET------TEEEEEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhc-CCCeEEEEEEEC------CEEEEEEe
Confidence 36789999999999999999999999999999987 4688888876 678999999997 45555554
No 196
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.06 E-value=1.1e-05 Score=84.97 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=56.2
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
.+++|..|.+||||+++||++||+|++|||+++..+ +++.+.++... ..+.|+|.|+ ++.+.+++++
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~-~~v~l~v~R~------g~~~~~~~~~ 429 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRG------NESIYLLMRL 429 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCC-CeEEEEEEEC------CEEEEEEEEe
Confidence 468899999999999999999999999999999874 68888887644 4899999997 4666666544
No 197
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.98 E-value=1.3e-05 Score=89.59 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=61.0
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcC-CCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAG-IHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AG-L~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
.++|+.+.......+++|..|.+||||+++| |++||+|++|||+++.+++.+++.++++. .+..|.|.|.|..
T Consensus 318 ~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~-~~~~v~L~v~r~~ 391 (721)
T 2xkx_A 318 TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 391 (721)
T ss_pred CCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHh-cCCeEEEEEEeCc
Confidence 4678877532123578999999999999999 99999999999999999888899999875 4678999998763
No 198
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.89 E-value=3.5e-06 Score=89.10 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=56.5
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcC-CCCCeEEEEEEeCCCCCCCCceEEEEEec
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRG-RAGTPVTVKVHSGKDVGRESGTREVNIPR 281 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g-~~G~~V~l~v~r~~~~~~~g~~~~vtl~r 281 (510)
.+++|..|.+||||++|||++||+|++|||+++..+ .++...+.. ..|++++|+|.|+ ++.++++++.
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~------g~~~~~~v~~ 354 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRD------GKQVNVNLEL 354 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESS------SCEEECCCC-
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEEC------CEEEEEEEEE
Confidence 568899999999999999999999999999999996 477777764 5789999999997 4556655543
No 199
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.70 E-value=8e-05 Score=80.11 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=53.9
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCH--------HHHHHHH-cCCCCCeEEEEEEeCCCCCCCCceE
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDS--------EAAALKL-RGRAGTPVTVKVHSGKDVGRESGTR 275 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~--------~~~~~ll-~g~~G~~V~l~v~r~~~~~~~g~~~ 275 (510)
..+++|..|.+||||+++ |++||+|++|||++|..... ..+..++ ...+|++|+|+|.|+ |+.+
T Consensus 276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~------Gk~~ 348 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRA------GEHK 348 (539)
T ss_dssp SBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEET------TEEE
T ss_pred cCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEEC------CEEE
Confidence 357899999999999876 99999999999999975310 0123333 346899999999998 5777
Q ss_pred EEEEec
Q 047092 276 EVNIPR 281 (510)
Q Consensus 276 ~vtl~r 281 (510)
+++++-
T Consensus 349 ~v~Vtl 354 (539)
T 4fln_A 349 KVQVVL 354 (539)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 776654
No 200
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.69 E-value=9.9e-05 Score=66.95 Aligned_cols=63 Identities=35% Similarity=0.524 Sum_probs=46.8
Q ss_pred eeeeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEE
Q 047092 193 QGVGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKV 262 (510)
Q Consensus 193 ~glGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v 262 (510)
..+|+.+. .+ +|..+.++|||+++||++||+|++|||+++.++..+.+.-.+. ..|..+.+++
T Consensus 100 ~~lG~~~~----~g--~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~-r~g~~~~l~v 162 (166)
T 1w9e_A 100 GHVGFIFK----NG--KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITI 162 (166)
T ss_dssp SCCSEEEE----TT--EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEE
T ss_pred CcEeEEEe----CC--EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHh-hCCCEEEEEE
Confidence 34677664 34 7889999999999999999999999999999987665544332 1344544444
No 201
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.64 E-value=7.1e-06 Score=86.77 Aligned_cols=59 Identities=22% Similarity=0.395 Sum_probs=0.0
Q ss_pred CCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeCC
Q 047092 205 TGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSGK 266 (510)
Q Consensus 205 ~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~~ 266 (510)
..+++|..|.+||||+++||++||+|++|||+++..+ +++.+.++...+ .+.|+|.|++
T Consensus 382 ~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~-~v~l~v~R~g 440 (448)
T 1ky9_A 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPS-VLALNIQRGD 440 (448)
T ss_dssp --------------------------------------------------------------
T ss_pred CCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCC-eEEEEEEECC
Confidence 3568899999999999999999999999999999874 477777776555 8889998873
No 202
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.44 E-value=1.9e-05 Score=81.88 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=0.0
Q ss_pred EEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEEeC
Q 047092 209 VVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 209 ~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
+|..|.+||||+++||++||+|++|||+++.+++.+++.+.++. .+..+.|++...
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p~ 373 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMPA 373 (388)
T ss_dssp ---------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence 67899999999999999999999999999998777788888875 556777777553
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=95.83 E-value=0.015 Score=62.35 Aligned_cols=56 Identities=5% Similarity=0.040 Sum_probs=49.3
Q ss_pred CcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCHHHHHHHHcCCCCCeEEEEEE
Q 047092 206 GHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDSEAAALKLRGRAGTPVTVKVH 263 (510)
Q Consensus 206 g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~~~~~~ll~g~~G~~V~l~v~ 263 (510)
..++|+.|.++++|..+|+++||+|++|||++|.+ .+++.+++....+..+.|.+.
T Consensus 415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~~ 470 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEFE 470 (539)
T ss_dssp CCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEET
T ss_pred eEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEEC
Confidence 35889999999999999999999999999999999 678999998777777777653
No 204
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=66.21 E-value=25 Score=33.04 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=57.8
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELESEGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVD 380 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~ 380 (510)
++|..|.|.. ++....+.+.++|+.+.+.+++.+||.+-.-+ +..+..+...+..
T Consensus 8 ~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~inspGG~v~~~~~i~~~i~~---------------------- 65 (230)
T 3viv_A 8 NIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAMMNIVQRIQQ---------------------- 65 (230)
T ss_dssp CEEEEEEEESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSCEEHHHHHHHHHHHHT----------------------
T ss_pred CeEEEEEEeCEECHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcCHHHHHHHHHHHHh----------------------
Confidence 4678888876 44556788999999888778999999875444 4444444433221
Q ss_pred CCccCCCcEEEEE---cCCCCcHHHHHHHHHh
Q 047092 381 GHAITHDPLVVLV---NEGSASASEILAGALH 409 (510)
Q Consensus 381 ~~~~~~gpvvVLv---n~~TaSaaE~~a~~Lk 409 (510)
.++|++..+ ++..+|++-.++.+-.
T Consensus 66 ----~~~PVia~v~p~~G~AasaG~~ia~a~d 93 (230)
T 3viv_A 66 ----SKIPVIIYVYPPGASAASAGTYIALGSH 93 (230)
T ss_dssp ----CSSCEEEEECSTTCEEETHHHHHHHTSS
T ss_pred ----CCCCEEEEEecCCCEEhHHHHHHHHhcC
Confidence 247899999 9999999998887654
No 205
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=54.01 E-value=12 Score=35.06 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=45.3
Q ss_pred eeEEEEEEcCCCcEEEEeecCCChhhhcCCCCCCEEEEECCEecCCCCH---HHHHHHHcCCCCCeEEEEEEeC
Q 047092 195 VGLFISVEPRTGHLVVLSCVEDSPAARAGIHEGDELIEINGERLDGIDS---EAAALKLRGRAGTPVTVKVHSG 265 (510)
Q Consensus 195 lGi~l~~~~~~g~l~V~~v~~gsPA~~AGL~~GD~IlaING~~v~~~~~---~~~~~ll~g~~G~~V~l~v~r~ 265 (510)
+++.+.. .++++.|.. +.+.|++.|..++++||.++.+-.. .++...+.|+.+.++.+.....
T Consensus 36 ~~~~~~~--~~~~~~v~~------~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~~ 101 (219)
T 2j3t_D 36 LDLLLKL--HDERVLVAF------GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRP 101 (219)
T ss_dssp CSSEEEE--CSSSEEEEE------CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEECC
T ss_pred cceeeee--ccceeEEee------cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecCC
Confidence 4444443 367887765 4577999999999999999987421 2567778888877777766544
No 206
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=38.25 E-value=1.1e+02 Score=24.99 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=31.0
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHHc---CCCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELESE---GAHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~---~~~~LIlDLR~N~ 345 (510)
+++..+++.. +...+.+.|.+.+.++... +.+.+|||+++=.
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~ 59 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNV 59 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCS
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCC
Confidence 4577777765 3334678888888886544 5789999999876
No 207
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=32.91 E-value=67 Score=27.05 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=34.8
Q ss_pred CceEEEEecc---cchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA---FSQTAAADMANTIHELESEGAHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s---F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~ 345 (510)
++|.|+++.. +....+..+...+.++...+.-.+++|+|...
T Consensus 19 dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~~ 63 (124)
T 3bl4_A 19 DGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATTA 63 (124)
T ss_dssp TSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred CCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEccccc
Confidence 5799999987 66667777778888887777788999999986
No 208
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=32.50 E-value=1.7e+02 Score=23.81 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=31.0
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELESEGAHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~ 345 (510)
+++..+++.. +...+.+.|.+.+..+ ..+.+.+|||+++=.
T Consensus 19 ~~v~v~~~~G~L~f~~a~~~~~~l~~~-~~~~~~vvlDls~v~ 60 (130)
T 4dgh_A 19 RELAVYALEGPFFFAAAETFERVMGSI-QETPQILILRLKWVP 60 (130)
T ss_dssp TTEEEEECCSSCCHHHHHHHHHHHHHS-SSCCSEEEEECTTCC
T ss_pred CCEEEEEEeeeEeehhHHHHHHHHHHh-ccCCCEEEEECCCCC
Confidence 4677888876 3344667888888765 357899999999987
No 209
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=29.84 E-value=89 Score=28.80 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=54.1
Q ss_pred CceEEEEecccchhHHHHHHHHHHHHHHc-CCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCC
Q 047092 304 TKTGYVKLSAFSQTAAADMANTIHELESE-GAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVD 380 (510)
Q Consensus 304 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~ 380 (510)
++|.||. ........+.+.+.|..+.+. +.+.++|.+-.-+ +..+..+...+.
T Consensus 45 ~rii~l~-g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~----------------------- 100 (218)
T 1y7o_A 45 DRIIMLT-GPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN----------------------- 100 (218)
T ss_dssp TTEEEEE-SCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHH-----------------------
T ss_pred CCEEEEe-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHH-----------------------
Confidence 3566664 334455678888888888654 5899999984444 445555544321
Q ss_pred CCccCCCcEEEEEcCCCCcHHHHHHHHHhc
Q 047092 381 GHAITHDPLVVLVNEGSASASEILAGALHD 410 (510)
Q Consensus 381 ~~~~~~gpvvVLvn~~TaSaaE~~a~~Lk~ 410 (510)
..+.|+++.+++..+|++-+++.+-..
T Consensus 101 ---~~~~pV~t~v~G~AaS~G~~Ia~a~d~ 127 (218)
T 1y7o_A 101 ---FIKADVQTIVMGMAASMGTVIASSGAK 127 (218)
T ss_dssp ---HSSSCEEEEEEEEEETHHHHHHTTSCT
T ss_pred ---hcCCCEEEEEccEeHHHHHHHHHcCCc
Confidence 123689999999999999988877543
No 210
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=29.03 E-value=68 Score=25.43 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=28.7
Q ss_pred ceEEEEecc-cchhHHHHHHHHHHHHHHcC-CCEEEEEcCCCC
Q 047092 305 KTGYVKLSA-FSQTAAADMANTIHELESEG-AHSYILDLRNNP 345 (510)
Q Consensus 305 ~igYi~i~s-F~~~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~ 345 (510)
++..+++.. +...+...+.+.+.++...+ .+.+|||+++=.
T Consensus 12 ~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~ 54 (116)
T 1th8_B 12 DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLT 54 (116)
T ss_dssp TEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEE
T ss_pred CEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCCc
Confidence 455666544 33345678888888766554 889999999876
No 211
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=25.59 E-value=1.1e+02 Score=25.02 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=30.3
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHH-HHHcCCCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHE-LESEGAHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~-l~~~~~~~LIlDLR~N~ 345 (510)
+++..+++.. +...+...+.+.+.+ +...+.+.+||||++-.
T Consensus 20 ~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~~~~~vvlDls~V~ 63 (125)
T 2ka5_A 20 DDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVE 63 (125)
T ss_dssp SSCEEECCCSCCSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCS
T ss_pred CCEEEEEEecEEecccHHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence 3566676654 333456788888888 54457889999999987
No 212
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=25.30 E-value=2.3e+02 Score=22.79 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.3
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELESEGAHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~ 345 (510)
+++..+++.. +.-.+.+.+.+.+.++. .+.+.+|||+++=.
T Consensus 16 ~~v~v~~l~G~L~f~~a~~l~~~l~~~~-~~~~~vilDl~~v~ 57 (118)
T 3ny7_A 16 DDVLVLRVIGPLFFAAAEGLFTDLESRL-EGKRIVILKWDAVP 57 (118)
T ss_dssp TTEEEEEEESCBCHHHHHHHHHHHHTTC-TTCSEEEEEEEECC
T ss_pred CCEEEEEEeceeEehhHHHHHHHHHHhc-CCCcEEEEEcCCCC
Confidence 5678888876 43445677777777653 47899999999977
No 213
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=21.84 E-value=85 Score=24.49 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=26.2
Q ss_pred ceEEEEecc-cchhHHHHHHHHHHHHHHcC-CCEEEEEcCCCC
Q 047092 305 KTGYVKLSA-FSQTAAADMANTIHELESEG-AHSYILDLRNNP 345 (510)
Q Consensus 305 ~igYi~i~s-F~~~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~ 345 (510)
++..|++.. +...+.+.+.+.+.++...+ .+.+|||+++=.
T Consensus 13 ~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~ 55 (110)
T 1sbo_A 13 DKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVS 55 (110)
T ss_dssp SEEEEEEESCBSTTTTTHHHHHHHTHHHHCSCSEEEEECTTCC
T ss_pred CEEEEEEeeEEccccHHHHHHHHHHHHhcCCCcEEEEECCCCc
Confidence 455666643 33334567777777654334 378999999877
No 214
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=20.90 E-value=1.4e+02 Score=28.37 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=51.7
Q ss_pred CceEEEEecc------cchhHHHHHHHHHHHHHH-cCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCcee
Q 047092 304 TKTGYVKLSA------FSQTAAADMANTIHELES-EGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTL 374 (510)
Q Consensus 304 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~ 374 (510)
++|++|.|+. |+.....+|.+++.++.+ ..++.+|| ++++ +..+.++..+.-........ ..+...
T Consensus 28 ~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~-~~~~~~-- 102 (278)
T 4f47_A 28 GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL--TGAGGYFCAGMDLKAATKKPPGDSFK-DGSYDP-- 102 (278)
T ss_dssp TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTCCC-----------------------CT--
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCCCcccCCcChHhhhccchhhhHH-HHHHHH--
Confidence 4688887765 445567889999999875 46899998 5555 55666654321111000000 000000
Q ss_pred EEEcCCCCc---cCCCcEEEEEcCCCCcHHHHHHHH
Q 047092 375 PINMVDGHA---ITHDPLVVLVNEGSASASEILAGA 407 (510)
Q Consensus 375 ~~~~~~~~~---~~~gpvvVLvn~~TaSaaE~~a~~ 407 (510)
.....-. ...+|++..+|+.+++++=.++.+
T Consensus 103 --~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lala 136 (278)
T 4f47_A 103 --SRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQG 136 (278)
T ss_dssp --TCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTT
T ss_pred --HHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHh
Confidence 0001111 467999999999999998776654
No 215
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.77 E-value=2.3e+02 Score=23.40 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=26.8
Q ss_pred CceEEEEecc-cchhHHHHHHHHHHHHHH----cCCCEEEEEcCCCC
Q 047092 304 TKTGYVKLSA-FSQTAAADMANTIHELES----EGAHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~----~~~~~LIlDLR~N~ 345 (510)
+++..+++.. +...+.+.|.+.+.++.. .+.+.+|||+++=.
T Consensus 29 ~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~~~~~~~vvlDls~v~ 75 (143)
T 3llo_A 29 PGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVN 75 (143)
T ss_dssp TTEEEEEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCC
T ss_pred CCeEEEEeCCCeEechHHHHHHHHHHHHccCCCCCceEEEEECCCCc
Confidence 4688888876 333456778888776543 47899999999977
No 216
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=20.58 E-value=3.3e+02 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=31.2
Q ss_pred CceEEEEeccc----chhHHHHHHHHHHHHH-HcCCCEEEEEcCCCC
Q 047092 304 TKTGYVKLSAF----SQTAAADMANTIHELE-SEGAHSYILDLRNNP 345 (510)
Q Consensus 304 ~~igYi~i~sF----~~~~~~~l~~~l~~l~-~~~~~~LIlDLR~N~ 345 (510)
+++..|++..- ...+..++++.+.+.- +.+.+.+||||++=.
T Consensus 13 ~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~~~~~~vvlDls~v~ 59 (121)
T 3t6o_A 13 AQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVE 59 (121)
T ss_dssp TTEEEEECCGGGSEECHHHHHHHHHHHHHTTCCSSSCEEEEECTTCC
T ss_pred CCEEEEEEccccccCchhhHHHHHHHHHHHHhhcCCCeEEEECCCCC
Confidence 46788888752 4456778888876543 457899999999988
No 217
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=20.18 E-value=1.3e+02 Score=27.41 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHH-cCCCEEEEEcCCCC--hhhHHHHHHhhcCCCceEEEEecCCCceeEEEcCCCCccCCCcEEEE
Q 047092 316 QTAAADMANTIHELES-EGAHSYILDLRNNP--VILRLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVL 392 (510)
Q Consensus 316 ~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~--~~~~~~la~~fl~~~~~~~~~~~r~g~~~~~~~~~~~~~~~gpvvVL 392 (510)
....+.+.+.|..+.+ .+.+.++|.+-.-| +..+..+...+.. .+.|+++.
T Consensus 38 ~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~--------------------------~~~pV~~~ 91 (208)
T 2cby_A 38 DEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL--------------------------APCDIATY 91 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH--------------------------CSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHh--------------------------cCCCEEEE
Confidence 3456778888887765 45889998886666 4455555543321 13689999
Q ss_pred EcCCCCcHHHHHHHHHhc
Q 047092 393 VNEGSASASEILAGALHD 410 (510)
Q Consensus 393 vn~~TaSaaE~~a~~Lk~ 410 (510)
+++..+|++-+++.+-..
T Consensus 92 v~g~AaS~g~~Ia~agd~ 109 (208)
T 2cby_A 92 AMGMAASMGEFLLAAGTK 109 (208)
T ss_dssp EEEEEETHHHHHHHTSCT
T ss_pred ECcEeHHHHHHHHhCCCc
Confidence 999999999999887543
Done!