BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047095
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8R7E6|CERK1_ARATH Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana GN=CERK1
PE=1 SV=1
Length = 617
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 125/178 (70%), Gaps = 4/178 (2%)
Query: 13 DNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYAN 72
D IL +N + DKD + +GSR+ VPF C C G FL +NFSY + DTY +VA + YAN
Sbjct: 64 DPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYAN 123
Query: 73 LTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIA 132
LTT++ L+A N FP NIP ++ T+NV+VNCSCGD+ VSKD+GLF+TYP+ ++LS+IA
Sbjct: 124 LTTMESLQARNPFPATNIP-LSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIA 182
Query: 133 NMSGLSPELLQSYNRGSDFSS--GLVFIPEKDQSGKYPPLQMSR-DGTDFFECASLLL 187
SG+S ++LQ YN G +F+S G+V++P +D +G +PP + S+ DG A +++
Sbjct: 183 RSSGVSADILQRYNPGVNFNSGNGIVYVPGRDPNGAFPPFKSSKQDGVGAGVIAGIVI 240
>sp|D7UPN3|CERK1_ORYSJ Chitin elicitor receptor kinase 1 OS=Oryza sativa subsp. japonica
GN=CERK1 PE=1 SV=1
Length = 605
Score = 134 bits (336), Expect = 4e-31, Method: Composition-based stats.
Identities = 77/190 (40%), Positives = 104/190 (54%), Gaps = 20/190 (10%)
Query: 1 MTFISEMFDTS---IDNILSFNPQVPDKDILSVGSRIKVPFKCNCIN------GQFLANN 51
+TFI+ +F +L +NP + + D + G R+ VPF C+C+ FLA
Sbjct: 45 LTFIATIFAIGGGGYQALLPYNPAITNPDYVVTGDRVLVPFPCSCLGLPAAPASTFLAGA 104
Query: 52 FSYKII----SHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGD 107
Y + DTY VA Y A+LTT WL A N +P IP + +NV +NCSCGD
Sbjct: 105 IPYPLPLPRGGGDTYDAVAANY-ADLTTAAWLEATNAYPPGRIPGGDGRVNVTINCSCGD 163
Query: 108 KKVSKDYGLFLTYPIELGENLSTIANMSGLSP----ELLQSYNRGSDFSS--GLVFIPEK 161
++VS YGLFLTYP+ GE L ++A G S EL++ YN G S G+VFIP K
Sbjct: 164 ERVSPRYGLFLTYPLWDGETLESVAAQYGFSSPAEMELIRRYNPGMGGVSGKGIVFIPVK 223
Query: 162 DQSGKYPPLQ 171
D +G Y PL+
Sbjct: 224 DPNGSYHPLK 233
>sp|Q8H8C7|CEBIP_ORYSJ Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica
GN=CEBIP PE=1 SV=1
Length = 356
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 3 FISEMFDTSIDNILSFNPQVPDKDI----LSVGSRIKVPFKCNCINGQFLANNF--SYKI 56
++ T++ ++L N +PD + ++ S +K+PF+C C NG ++ Y +
Sbjct: 58 LVARFNTTTLPDLLGAN-GLPDGTLSSAPVAANSTVKIPFRCRC-NGDVGQSDRLPIYVV 115
Query: 57 ISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGL 116
D +A + T + A N PD N +V+ T+ + + CSC DK+ + +
Sbjct: 116 QPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLWIPLPCSC-DKEEGSNV-M 173
Query: 117 FLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFSSGLVFIPEKDQSGK 166
L Y + GEN S IA G++ L + N+ D P K Q G+
Sbjct: 174 HLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDD--------PTKLQMGQ 215
>sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis
thaliana GN=LYM1 PE=1 SV=1
Length = 416
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 34 IKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDV 93
+K+P C+C++G + + YK D +A++ Y L + + ++ N D ++ DV
Sbjct: 92 LKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQEANSVNDPSLLDV 151
Query: 94 NTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNR--GSDF 151
T++ + + C+C + + ++L+Y ++ + L IA + L + N D
Sbjct: 152 GTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPDV 211
Query: 152 SSG-LVFIPEKDQSGKYPPLQMSRDGTDF 179
SSG ++ +P + K+P R +DF
Sbjct: 212 SSGDILAVPLSACASKFP-----RYASDF 235
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 24 DKDILSVGSRIKVPFKCNCING---QFLANNFSYKIISHDTYAKVAETYYANLTTVDWLR 80
D +L VG+ + +P C C NG A SY + DT +A Y +T D +
Sbjct: 145 DPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTIT--DLMN 202
Query: 81 ANNIFPDNNIPDVNTT-INVVVNCSCGDK--KVSKDYGLFL---TYPIELGE 126
N + PDV++ I V +C K + + D+GL + +Y + G
Sbjct: 203 VNAM----GAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGH 250
>sp|Q6NPN4|LYM3_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis
thaliana GN=LYM3 PE=1 SV=1
Length = 423
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 4 ISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYA 63
+S + SID +S+ P V + +L +K+P C+C++G + + YK + DT
Sbjct: 63 VSMLLSNSID--ISY-PDV-ENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLG 118
Query: 64 KVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIE 123
+A++ Y L + + ++ N D ++ DV T + + + C+C + L+L+Y +
Sbjct: 119 SIADSVYGGLVSPEQIQVANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVR 178
Query: 124 LGENLSTIAN 133
+ ++ IA
Sbjct: 179 GIDTMAGIAK 188
>sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis
thaliana GN=LYM2 PE=1 SV=1
Length = 350
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 34 IKVPFKCNCINGQFLAN-NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPD 92
++VP C+C NG ++N + Y I D + VA + L T + + N PD N +
Sbjct: 89 VRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKIE 148
Query: 93 VNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYN 146
+ + + CSC DK +D + + ++LG +L IA G L N
Sbjct: 149 IGQKFWIPLPCSC-DKLNGEDV-VHYAHVVKLGSSLGEIAAQFGTDNTTLAQLN 200
>sp|Q37896|LYS_BPB03 Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1
Length = 263
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 1 MTFISEMFDTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHD 60
++ I++ TS +L NP + + + + VG RI V G + + YKI +
Sbjct: 173 LSEIAKKIKTSTKTLLELNPTIKNPNKIYVGQRINV-------GGSPVKSTLKYKIKRGE 225
Query: 61 TYAKVAETYYANLTTVDWL--------RANNIFPDNNI 90
T +A+ N TTV L ANNI+ I
Sbjct: 226 TLTGIAK---KNKTTVSQLMKLNPNIKNANNIYAGQTI 260
>sp|Q54CU4|COLA_DICDI Colossin-A OS=Dictyostelium discoideum GN=colA PE=3 SV=1
Length = 11103
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 22 VPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRA 81
+P V + PF + N F+ + + I HD + T + + T+ W+ +
Sbjct: 3906 IPKDQYKPVNTSSDSPFSVDSTNDNFVTVRYCFTITDHDVKPPIGVTPFYEIGTIVWIDS 3965
Query: 82 NN 83
NN
Sbjct: 3966 NN 3967
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 22 VPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRA 81
+P V + PF + N F+ + + I HD + T + + T W+ +
Sbjct: 1750 IPKDQYKPVNTSSDSPFSADSTNDSFVTVKYCFTITDHDVKPPIGVTPFYEIGTFVWIDS 1809
Query: 82 NN 83
NN
Sbjct: 1810 NN 1811
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 22 VPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRA 81
+P V + PF + N F+ + + I HD + T + + T W+ +
Sbjct: 7382 IPKDQYKPVNTSSDSPFSADSTNDSFVTVKYCFTITDHDVKPPIGVTPFYEIGTFVWIDS 7441
Query: 82 NN 83
NN
Sbjct: 7442 NN 7443
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 22 VPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRA 81
+P V + PF + N F+ + + I HD + T + + T W+ +
Sbjct: 2613 IPKDQYKPVNTSSDSPFSVDSTNDNFVTVKYCFTITDHDVKPPIGVTPFYEIGTFVWIDS 2672
Query: 82 NN 83
NN
Sbjct: 2673 NN 2674
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 22 VPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRA 81
+P V + PF + N F+ + + I HD + T + + T W+ +
Sbjct: 4351 IPKDQYKPVNTSSDSPFSVDSTNDNFVTVKYCFTITDHDVKPPIGVTPFYEIGTFVWIDS 4410
Query: 82 NN 83
NN
Sbjct: 4411 NN 4412
>sp|Q10614|Y1288_MYCTU Uncharacterized protein Rv1288/MT1326 OS=Mycobacterium tuberculosis
GN=Rv1288 PE=4 SV=1
Length = 456
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 9 DTSIDNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFS-YKIISHDTYAKVAE 67
D ++ +++ + D D+++VG R+ +P +F+ Y +++ DT + +A
Sbjct: 74 DAELNWLIAAASGIADPDVVNVGQRLIMP-------------DFTRYTVVAGDTLSALAA 120
Query: 68 TYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCG 106
+Y + + + A N D + DV + + + S G
Sbjct: 121 RFYGDASLYPLIAAVNGIADPGVIDVGQVLVIFIGRSDG 159
>sp|Q1GCM4|AROE_RUEST Shikimate dehydrogenase OS=Ruegeria sp. (strain TM1040) GN=aroE
PE=3 SV=1
Length = 276
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 64 KVAETYYANLTTVDWLRANNIFPDNNIPDVNTT 96
+VA+T+ + +T VDW+ A N+ D ++ VNTT
Sbjct: 165 EVAQTFGSKVTAVDWVEAGNVIEDASLV-VNTT 196
>sp|Q8XHG1|SYM_CLOPE Methionine--tRNA ligase OS=Clostridium perfringens (strain 13 /
Type A) GN=metG PE=3 SV=1
Length = 645
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 85 FPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPE 140
+P N+ NT V + K+++ +FLT E G+ + IAN G++P+
Sbjct: 14 YPSTNLHIGNTYTTVAADAIARFKRLTGHEVMFLTGTDEHGQKIERIANEKGITPK 69
>sp|B7K8M6|MEND_CYAP7 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Cyanothece sp. (strain PCC 7424) GN=menD
PE=3 SV=1
Length = 581
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 117 FLTYPIELGENLSTIANMSGLSPELLQSYN---RGSDFSSGL 155
FL YP+ LGE LS + N + L+P L+ +Y+ R S + L
Sbjct: 256 FLKYPV-LGEALSPVRNYAALNPYLISTYDLILRNSSLAENL 296
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,752,759
Number of Sequences: 539616
Number of extensions: 2833657
Number of successful extensions: 6806
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6781
Number of HSP's gapped (non-prelim): 33
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)