Query 047095
Match_columns 188
No_of_seqs 211 out of 1444
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 100.0 5.3E-42 1.8E-46 270.5 18.2 174 1-175 20-203 (212)
2 4eby_A Chitin elicitor recepto 99.9 4E-27 1.4E-31 185.5 12.2 130 50-186 8-161 (212)
3 2l9y_A CVNH-LYSM lectin; carbo 99.7 3E-18 1E-22 130.1 -2.0 96 50-149 61-157 (167)
4 2gu1_A Zinc peptidase; alpha/b 99.5 7.7E-14 2.6E-18 117.8 8.0 107 50-160 6-152 (361)
5 2djp_A Hypothetical protein SB 99.5 7.1E-14 2.4E-18 92.7 5.4 62 94-167 4-69 (77)
6 2l9y_A CVNH-LYSM lectin; carbo 99.3 9.7E-13 3.3E-17 99.7 4.9 68 117-184 62-141 (167)
7 2djp_A Hypothetical protein SB 99.3 9.3E-13 3.2E-17 87.2 4.1 61 30-103 3-64 (77)
8 1e0g_A Membrane-bound lytic mu 99.3 4.6E-12 1.6E-16 76.0 5.1 43 118-161 3-48 (48)
9 1e0g_A Membrane-bound lytic mu 99.2 9E-12 3.1E-16 74.7 4.9 46 51-101 2-47 (48)
10 2gu1_A Zinc peptidase; alpha/b 98.9 3.7E-10 1.3E-14 95.2 3.8 97 1-102 18-153 (361)
11 4a1k_A Putative L, D-transpept 98.7 1.3E-08 4.3E-13 76.8 4.9 44 117-160 2-48 (165)
12 4a1k_A Putative L, D-transpept 98.4 2.8E-07 9.7E-12 69.3 4.9 47 51-101 2-48 (165)
13 3slu_A M23 peptidase domain pr 97.2 0.0019 6.4E-08 54.4 9.2 108 49-160 12-160 (371)
14 3slu_A M23 peptidase domain pr 95.3 0.027 9.3E-07 47.3 6.0 48 115-162 12-67 (371)
15 2glo_A Brinker CG9653-PA; prot 82.2 0.81 2.8E-05 27.3 2.3 25 122-146 18-46 (59)
16 2elh_A CG11849-PA, LD40883P; s 72.4 3 0.0001 26.9 3.0 23 123-145 36-58 (87)
17 1tc3_C Protein (TC3 transposas 72.3 3.6 0.00012 22.4 3.0 23 123-145 19-41 (51)
18 2jrt_A Uncharacterized protein 71.0 3.2 0.00011 27.6 2.9 29 120-148 44-72 (95)
19 2jn6_A Protein CGL2762, transp 70.9 2.8 9.7E-05 27.3 2.7 21 125-145 23-43 (97)
20 2lfc_A Fumarate reductase, fla 68.0 3.7 0.00013 29.7 3.0 27 121-147 91-121 (160)
21 1jko_C HIN recombinase, DNA-in 66.5 3.3 0.00011 23.0 2.0 23 123-145 19-41 (52)
22 2rn7_A IS629 ORFA; helix, all 57.7 3.8 0.00013 27.2 1.3 21 125-145 30-50 (108)
23 2x48_A CAG38821; archeal virus 57.6 9.7 0.00033 21.7 3.0 23 123-145 29-51 (55)
24 1rr7_A Middle operon regulator 50.2 12 0.0004 26.2 2.9 21 125-145 92-112 (129)
25 1pdn_C Protein (PRD paired); p 46.0 16 0.00055 24.1 3.0 23 123-145 31-53 (128)
26 1k78_A Paired box protein PAX5 45.7 13 0.00043 26.0 2.5 23 123-145 46-68 (149)
27 1neq_A DNA-binding protein NER 42.6 19 0.00066 22.3 2.8 23 123-145 20-42 (74)
28 4abx_A DNA repair protein RECN 42.3 15 0.00053 26.8 2.6 20 126-145 132-151 (175)
29 1xn7_A Hypothetical protein YH 41.6 20 0.00067 22.7 2.7 31 127-158 18-49 (78)
30 1u78_A TC3 transposase, transp 39.7 20 0.00069 24.3 2.8 23 123-145 20-42 (141)
31 2k02_A Ferrous iron transport 36.8 25 0.00085 22.8 2.6 31 127-158 18-49 (87)
32 2o8x_A Probable RNA polymerase 35.4 33 0.0011 20.1 3.0 23 123-145 29-51 (70)
33 3qq6_A HTH-type transcriptiona 34.6 22 0.00076 21.8 2.1 58 54-147 18-75 (78)
34 2oa4_A SIR5; structure, struct 34.5 22 0.00075 23.9 2.1 29 118-146 43-71 (101)
35 2p7v_B Sigma-70, RNA polymeras 34.2 37 0.0013 20.1 3.1 22 124-145 24-45 (68)
36 2k9q_A Uncharacterized protein 33.3 21 0.00072 21.6 1.8 23 126-148 45-67 (77)
37 3b7h_A Prophage LP1 protein 11 32.6 23 0.00078 21.2 1.9 23 126-148 51-73 (78)
38 1fse_A GERE; helix-turn-helix 31.4 41 0.0014 19.8 3.0 22 123-144 24-45 (74)
39 2k27_A Paired box protein PAX- 31.4 26 0.0009 24.6 2.3 25 123-147 39-63 (159)
40 3bd1_A CRO protein; transcript 31.1 32 0.0011 20.9 2.4 22 123-145 10-31 (79)
41 2pij_A Prophage PFL 6 CRO; tra 31.0 36 0.0012 19.8 2.6 24 121-145 10-33 (67)
42 2k5e_A Uncharacterized protein 30.3 40 0.0014 20.9 2.7 23 124-146 39-62 (73)
43 2kfs_A Conserved hypothetical 29.3 55 0.0019 23.5 3.6 61 127-187 33-105 (148)
44 1ku3_A Sigma factor SIGA; heli 29.3 49 0.0017 19.8 3.1 21 124-144 29-49 (73)
45 3s8q_A R-M controller protein; 29.2 28 0.00096 21.2 1.9 20 126-145 54-73 (82)
46 2ofy_A Putative XRE-family tra 28.5 28 0.00095 21.5 1.8 21 126-146 58-78 (86)
47 2jpc_A SSRB; DNA binding prote 26.1 44 0.0015 19.0 2.3 22 123-144 11-32 (61)
48 2jml_A DNA binding domain/tran 25.7 38 0.0013 21.0 2.1 21 127-147 7-27 (81)
49 2ga1_A Protein of unknown func 25.4 45 0.0015 22.5 2.4 24 122-145 61-85 (106)
50 3f6w_A XRE-family like protein 25.3 36 0.0012 20.7 1.9 20 126-145 57-76 (83)
51 3qwg_A ESX-1 secretion-associa 25.3 26 0.00087 24.1 1.2 19 126-144 60-78 (123)
52 3op9_A PLI0006 protein; struct 25.2 36 0.0012 22.3 2.0 23 125-147 51-73 (114)
53 2k53_A A3DK08 protein; NESG, C 25.0 65 0.0022 20.1 3.0 24 124-147 37-61 (76)
54 1x3u_A Transcriptional regulat 24.8 63 0.0022 19.4 3.0 23 123-145 29-51 (79)
55 1je8_A Nitrate/nitrite respons 24.8 62 0.0021 20.0 3.0 22 123-144 34-55 (82)
56 1hlv_A CENP-B, major centromer 24.6 37 0.0013 22.8 2.0 23 123-145 22-45 (131)
57 3r1f_A ESX-1 secretion-associa 24.4 27 0.00092 24.4 1.2 19 126-144 62-80 (135)
58 2ek5_A Predicted transcription 24.3 56 0.0019 22.4 2.9 23 123-145 23-48 (129)
59 1b0n_B Protein (SINI protein); 24.1 38 0.0013 20.2 1.7 16 4-19 21-36 (57)
60 3g5g_A Regulatory protein; tra 23.9 39 0.0013 21.9 1.9 21 125-145 70-90 (99)
61 3tqn_A Transcriptional regulat 23.3 66 0.0022 21.3 3.0 19 127-145 35-53 (113)
62 2l0k_A Stage III sporulation p 23.0 59 0.002 21.2 2.7 21 125-145 20-40 (93)
63 1nd9_A Translation initiation 22.8 39 0.0013 18.5 1.5 19 127-145 4-22 (49)
64 1tty_A Sigma-A, RNA polymerase 22.7 72 0.0025 19.9 3.0 22 124-145 37-58 (87)
65 1jq4_A Methane monooxygenase c 22.5 82 0.0028 20.1 3.3 21 118-138 17-37 (98)
66 1frd_A Heterocyst [2Fe-2S] fer 22.4 81 0.0028 20.1 3.3 22 118-139 16-37 (98)
67 1frr_A Ferredoxin I; electron 22.0 80 0.0027 19.9 3.2 22 118-139 13-34 (95)
68 2xi8_A Putative transcription 21.9 72 0.0025 17.9 2.7 25 123-147 12-36 (66)
69 1r8d_A Transcription activator 21.8 63 0.0022 21.3 2.7 21 127-147 4-24 (109)
70 2bt6_A Adrenodoxin 1; rutheniu 21.7 82 0.0028 20.6 3.2 22 118-139 19-40 (108)
71 4dyq_A Gene 1 protein; GP1, oc 21.4 34 0.0012 23.9 1.3 24 122-145 25-49 (140)
72 1j9i_A GPNU1 DBD;, terminase s 21.4 72 0.0025 18.9 2.7 21 127-147 4-24 (68)
73 2r1j_L Repressor protein C2; p 21.3 68 0.0023 18.2 2.5 25 123-147 16-40 (68)
74 2wlb_A ETP1-FD, electron trans 21.3 85 0.0029 20.2 3.2 22 118-139 16-37 (103)
75 2xvc_A ESCRT-III, SSO0910; cel 21.1 82 0.0028 18.8 2.7 18 128-145 28-45 (59)
76 1uxc_A FRUR (1-57), fructose r 21.1 75 0.0025 19.0 2.7 21 127-147 2-23 (65)
77 3hug_A RNA polymerase sigma fa 21.0 79 0.0027 19.8 3.0 22 123-144 51-72 (92)
78 1ufm_A COP9 complex subunit 4; 20.9 70 0.0024 20.4 2.6 19 127-145 32-50 (84)
79 2ao9_A Phage protein; structur 20.7 77 0.0026 22.8 3.1 24 124-147 47-70 (155)
80 2b0l_A GTP-sensing transcripti 20.7 64 0.0022 21.1 2.5 19 127-145 45-63 (102)
81 1rzs_A Antirepressor, regulato 20.5 77 0.0026 18.4 2.6 21 126-146 11-31 (61)
82 2vz4_A Tipal, HTH-type transcr 20.4 72 0.0024 21.0 2.7 21 127-147 3-23 (108)
83 2hin_A GP39, repressor protein 20.1 79 0.0027 19.5 2.7 18 128-145 13-30 (71)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=100.00 E-value=5.3e-42 Score=270.52 Aligned_cols=174 Identities=49% Similarity=0.941 Sum_probs=151.2
Q ss_pred ChhHHHHcCCCH--------HHHHhcCCCCCCCCCCCCCCEEEEcCccccCCCccccCceEEEecCCCcHHHHHHHHcCC
Q 047095 1 MTFISEMFDTSI--------DNILSFNPQVPDKDILSVGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYAN 72 (188)
Q Consensus 1 L~~IA~~~gvs~--------~~l~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~ 72 (188)
|+.||++||+++ ++|+++||+|++++.|.+||.|+||..|.|.++........|+|++|||||.||+++|++
T Consensus 20 L~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~ 99 (212)
T 4eby_A 20 LSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYAN 99 (212)
T ss_dssp HHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTTEEEEEEEEECCTTCCHHHHHHTTTTT
T ss_pred HHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCccccCceEEEecCCCcHHHHHHHhcCC
Confidence 689999999999 999999999977789999999999999988755444456789999999999999338996
Q ss_pred CCCHHHHHHhCCCCCCCccCCCcEEEEcccCCCCCCcccCCccceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCCCC
Q 047095 73 LTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSDFS 152 (188)
Q Consensus 73 l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~~~ 152 (188)
++++++|+++|++.++.|.+ ||.|.||..|.|+..+.+...+...+|+|++|||||+||++||+++++|++||++.++.
T Consensus 100 lvt~~~L~~~N~~~~~~l~~-Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~fgvsv~~L~~~N~~~~~~ 178 (212)
T 4eby_A 100 LTTMESLQARNPFPATNIPL-SATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFN 178 (212)
T ss_dssp SSCHHHHHHHCCSCTTCCCT-TCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCHHHHHHHHTSCHHHHHHHSTTCCTT
T ss_pred CCCHHHHHHhcCCCcccCCC-CCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcHHHHHHHHCcCHHHHHHhcCCCccC
Confidence 67999999999988889999 99999999999876544444556689999999999999999999999999999998744
Q ss_pred --CCEEEEcCCCCCCCCCCcccCCC
Q 047095 153 --SGLVFIPEKDQSGKYPPLQMSRD 175 (188)
Q Consensus 153 --g~~l~iP~~~~~~~~~p~~~~~~ 175 (188)
+++|+||.+.+++.++|+.+.++
T Consensus 179 ~~~g~l~IP~~~~~~~~~~~~~~~~ 203 (212)
T 4eby_A 179 SGNGIVYVPGRDPNGAFPPFKSSKQ 203 (212)
T ss_dssp SCSSEEEEECCCTTSCCCCCCC---
T ss_pred CCCCEEEecCCCCCCccCCcccccc
Confidence 66699999999999999977765
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.94 E-value=4e-27 Score=185.53 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=105.1
Q ss_pred CceEEEecCCCcHHHHHHHHcCCCCCH--------HHHHHhC-CC-CCCCccCCCcEEEEcccCCCCCCcccCCccceEE
Q 047095 50 NNFSYKIISHDTYAKVAETYYANLTTV--------DWLRANN-IF-PDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLT 119 (188)
Q Consensus 50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~--------~~L~~~N-~l-~~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~ 119 (188)
.+..|+|++|||||.||+ +|+. ++ ++|+++| .+ +++.|.+ ||.|.||..|.|.... ......+
T Consensus 8 a~~~Y~V~~GDTL~~IA~-~~~v--sv~~~~~~~~~~I~~~Np~l~~~~~l~~-Gq~L~IP~~~~~~~~~---~~~~~~~ 80 (212)
T 4eby_A 8 ALASYYLENGTTLSVINQ-NLNS--SIAPYDQINFDPILRYNSNIKDKDRIQM-GSRVLVPFPCECQPGD---FLGHNFS 80 (212)
T ss_dssp EEEEEECCTTCCHHHHHH-HTCC--SSSCCCSSCCHHHHTTCTTCSCTTSCCT-TCEEEEEECCEEETTT---EEEEEEE
T ss_pred ceEEEEeCCCCCHHHHHH-HHCC--CchhccccCHHHHHHhccCCCCcCccCC-CCEEEEeccccccCCc---cccCceE
Confidence 356899999999999997 8986 77 9999999 67 4789999 9999999998885321 1223478
Q ss_pred EEeecCCcHHHHH-HHhC--CCHHHHHhhcCCCC--CC-CCEEEEcCCCCCCCCC--------CcccCCCCCcHHHhhhh
Q 047095 120 YPIELGENLSTIA-NMSG--LSPELLQSYNRGSD--FS-SGLVFIPEKDQSGKYP--------PLQMSRDGTDFFECASL 185 (188)
Q Consensus 120 y~V~~GDTl~~IA-~~~~--vs~~~l~~~N~~~~--~~-g~~l~iP~~~~~~~~~--------p~~~~~~~~~~~~~~~~ 185 (188)
|+|++|||||+|| ++|+ +++++|+++|++.. +. ||+|.||..+...... -.+..+.|||+|.||+-
T Consensus 81 Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~ 160 (212)
T 4eby_A 81 YSVRQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARS 160 (212)
T ss_dssp EECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCHHHHHHH
T ss_pred EEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcHHHHHHH
Confidence 9999999999999 7999 99999999999543 45 9999999865322111 12667999999999975
Q ss_pred h
Q 047095 186 L 186 (188)
Q Consensus 186 ~ 186 (188)
.
T Consensus 161 f 161 (212)
T 4eby_A 161 S 161 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.66 E-value=3e-18 Score=130.05 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=74.6
Q ss_pred CceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-CCCccCCCcEEEEcccCCCCCCcccCCccceEEEEeecCCcH
Q 047095 50 NNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-DNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENL 128 (188)
Q Consensus 50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl 128 (188)
....|+|++|||||.||+ +|+. ++.+|+++|++. ++.|++ ||+|.||.....+.............|.|++||||
T Consensus 61 ~~~~y~V~~GDTL~~IA~-~~~~--~~~~l~~~N~~~~~~~i~~-Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL 136 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGR-RFDC--DFHEIARRNNIQNEDLIYP-GQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVL 136 (167)
T ss_dssp SCEEEEECTTCCHHHHHH-HTTC--CHHHHHHHHTCCGGGCCCT-TEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEE
T ss_pred CCceEEECCCCcHHHHHH-HcCC--CHHHHHHHcCCCCcccccC-CCEEEEcCCCCccccccccccccceEEEeCCcCCh
Confidence 456899999999999997 8975 999999999984 689999 99999997543211100001122367999999999
Q ss_pred HHHHHHhCCCHHHHHhhcCCC
Q 047095 129 STIANMSGLSPELLQSYNRGS 149 (188)
Q Consensus 129 ~~IA~~~~vs~~~l~~~N~~~ 149 (188)
+.||++||.+++..+.+|...
T Consensus 137 ~aIA~r~G~~v~s~i~Ln~~I 157 (167)
T 2l9y_A 137 EAELRYSGGWNRSRIYLDEHI 157 (167)
T ss_dssp EEEEEETTEEEEEEECGGGTE
T ss_pred HHHHHHcCCceEEEEEccccc
Confidence 999988998887777777654
No 4
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.47 E-value=7.7e-14 Score=117.76 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=81.0
Q ss_pred CceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-----CCCccCCCcEEEEcccCCCCC---------C-c----c
Q 047095 50 NNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-----DNNIPDVNTTINVVVNCSCGD---------K-K----V 110 (188)
Q Consensus 50 ~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-----~~~i~~~Gq~L~IP~~~~~~~---------~-~----~ 110 (188)
.+..|+|++||||++|++ +|+. ++++|.++|++. .+.|++ ||+|.||......- . . .
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~-r~gv--s~~~l~~~n~~~~~~~~~~~L~~-Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~ 81 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFA-QLGV--PYSILQKILSVDLDHLQLDMIQP-GEELELMMDDMGQLSRLIYHMSIVEKAIYTR 81 (361)
T ss_dssp -CEEEECCTTCCHHHHHH-HTTC--CHHHHHHHHHHGGGTCCGGGCCT-TCEEEEEECTTSCEEEEEEEEETTEEEEEEE
T ss_pred CceEEEECCCCcHHHHHH-HcCC--CHHHHHHHHhhcccccchhcCCC-CCEEEEEECCCCcceEEEEEcCccceEEEEe
Confidence 567899999999999997 8985 999999999864 468999 99999997532100 0 0 0
Q ss_pred cCC------------ccceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--------CC-CCEEEEcC
Q 047095 111 SKD------------YGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSD--------FS-SGLVFIPE 160 (188)
Q Consensus 111 ~~~------------~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--------~~-g~~l~iP~ 160 (188)
..+ ......|.|+.|||||+||++||++.++|++||++.. ++ |+.+.|+.
T Consensus 82 ~~~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~ 152 (361)
T 2gu1_A 82 ENDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILV 152 (361)
T ss_dssp CTTSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEE
T ss_pred cCCCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEE
Confidence 000 0113578999999999999999999999999998642 44 99988875
No 5
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=7.1e-14 Score=92.68 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=51.5
Q ss_pred CcEEEEcccCCCCCCcccCCccceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC---CC-CCEEEEcCCCCCCCC
Q 047095 94 NTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIANMSGLSPELLQSYNRGSD---FS-SGLVFIPEKDQSGKY 167 (188)
Q Consensus 94 Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~---~~-g~~l~iP~~~~~~~~ 167 (188)
||.+.+|.. ....+|+|++|||||+||++|++++++|+++|++.+ +. |++|+||....+...
T Consensus 4 Gq~l~ip~~------------~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~~~~~~ 69 (77)
T 2djp_A 4 GSSGCSPVR------------ERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDL 69 (77)
T ss_dssp CCCCCCCCC------------EEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEECCSCCS
T ss_pred CcEeeccCC------------CCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCCCCCCc
Confidence 888888852 234789999999999999999999999999999874 33 999999987655433
No 6
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.32 E-value=9.7e-13 Score=99.67 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=54.8
Q ss_pred eEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC---CC-CCEEEEcCCCCCCCC--------CCcccCCCCCcHHHhhh
Q 047095 117 FLTYPIELGENLSTIANMSGLSPELLQSYNRGSD---FS-SGLVFIPEKDQSGKY--------PPLQMSRDGTDFFECAS 184 (188)
Q Consensus 117 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~---~~-g~~l~iP~~~~~~~~--------~p~~~~~~~~~~~~~~~ 184 (188)
..+|+|++|||||+||++|++++.+|+++|++.+ +. ||+|.||........ +....++.|+|++.+|+
T Consensus 62 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL~aIA~ 141 (167)
T 2l9y_A 62 TATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVLEAELR 141 (167)
T ss_dssp CEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEEEEEEE
T ss_pred CceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCCCCccccccccccccceEEEeCCcCChHHHHH
Confidence 3689999999999999999999999999999886 44 999999986543111 12344678999998875
No 7
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=9.3e-13 Score=87.22 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCCEEEEcCccccCCCccccCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-CCCccCCCcEEEEcccC
Q 047095 30 VGSRIKVPFKCNCINGQFLANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-DNNIPDVNTTINVVVNC 103 (188)
Q Consensus 30 ~Gq~L~IP~~~~~~~~~~~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-~~~i~~~Gq~L~IP~~~ 103 (188)
.||.+.+|... ....|+|++|||||.||+ +|+. ++++|+++|++. ++.|.+ ||+|.||...
T Consensus 3 ~Gq~l~ip~~~---------~~~~y~V~~GDTL~~IA~-~~~~--~~~~l~~~N~l~~~~~l~~-Gq~l~iP~~~ 64 (77)
T 2djp_A 3 SGSSGCSPVRE---------RRLEHQLEPGDTLAGLAL-KYGV--TMEQIKRANRLYTNDSIFL-KKTLYIPILT 64 (77)
T ss_dssp CCCCCCCCCCE---------EEEEECCCTTCCHHHHHH-HHTC--CHHHHHHHHTCCCSSCGGG-SSCEEEEEEC
T ss_pred CCcEeeccCCC---------CcEEEEECCCCcHHHHHH-HHCc--CHHHHHHHcCCCCccccCC-CCEEEECCCC
Confidence 68999998642 356899999999999997 8985 999999999985 678999 9999999753
No 8
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.28 E-value=4.6e-12 Score=76.03 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=38.4
Q ss_pred EEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--CC-CCEEEEcCC
Q 047095 118 LTYPIELGENLSTIANMSGLSPELLQSYNRGSD--FS-SGLVFIPEK 161 (188)
Q Consensus 118 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--~~-g~~l~iP~~ 161 (188)
.+|+|++|||||+||++||+++++|+++|+ .. +. |+.|.||+.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~-~~~~l~~G~~l~ip~~ 48 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS-DTANLQPGDKLTLFVK 48 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS-CGGGCCTTEEEECCCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC-CCCcCCcCCEEEEecC
Confidence 479999999999999999999999999998 32 45 999999963
No 9
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.24 E-value=9e-12 Score=74.73 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=41.6
Q ss_pred ceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcc
Q 047095 51 NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVV 101 (188)
Q Consensus 51 ~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~ 101 (188)
...|+|++|||||+||+ +|+. ++++|.++|+ .++.+.+ ||.|.||.
T Consensus 2 ~~~y~V~~GDtl~~Ia~-~~~~--~~~~l~~~N~-~~~~l~~-G~~l~ip~ 47 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAK-RHGV--NIKDVMRWNS-DTANLQP-GDKLTLFV 47 (48)
T ss_dssp CCEEEECTTCCHHHHHH-HHTC--CHHHHHHHCS-CGGGCCT-TEEEECCC
T ss_pred CEEEEEcCCCcHHHHHH-HHCc--CHHHHHHhCC-CCCcCCc-CCEEEEec
Confidence 35799999999999997 8985 9999999999 7788999 99999995
No 10
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.94 E-value=3.7e-10 Score=95.20 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=73.0
Q ss_pred ChhHHHHcCCCHHHHHhcCCCCCC----CCCCCCCCEEEEcCccccC--------------------CCcc---------
Q 047095 1 MTFISEMFDTSIDNILSFNPQVPD----KDILSVGSRIKVPFKCNCI--------------------NGQF--------- 47 (188)
Q Consensus 1 L~~IA~~~gvs~~~l~~~Np~l~~----~~~l~~Gq~L~IP~~~~~~--------------------~~~~--------- 47 (188)
|+.||++||++.++|+++| ++.. .+.|.+||.|.||...... ++..
T Consensus 18 L~~Ia~r~gvs~~~l~~~n-~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~f~~~~~~~~~ 96 (361)
T 2gu1_A 18 LSGIFAQLGVPYSILQKIL-SVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDFQEISG 96 (361)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECCC
T ss_pred HHHHHHHcCCCHHHHHHHH-hhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecCCCcceeeecccCc
Confidence 6899999999999999999 5532 3679999999999643210 0000
Q ss_pred ccCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCC-C-----CCccCCCcEEEEccc
Q 047095 48 LANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFP-D-----NNIPDVNTTINVVVN 102 (188)
Q Consensus 48 ~~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~-~-----~~i~~~Gq~L~IP~~ 102 (188)
......|+|+.|||||.||+ +|+. +.++|+++|++. . ..|++ ||++.|+..
T Consensus 97 ~~~~~~~~v~igdSL~~iA~-~~Gv--s~~~i~~ln~i~~~~idf~~~Lr~-GD~l~V~~~ 153 (361)
T 2gu1_A 97 EWREILFSGEINGSFSVSAR-RVGL--TSSQVANITQVMKDKIDFSRSLRA-GDRFDILVK 153 (361)
T ss_dssp EEEEEEEEEESSSCHHHHHH-HTTC--CHHHHHHHHHHHTTTCCTTTCCCC--CEEEEEEE
T ss_pred eEEEEEEEEEECCcHHHHHH-HcCC--CHHHHHHHHHhhcccccccccCCC-CCEEEEEEE
Confidence 01124688999999999997 8985 999999999852 2 46999 999999864
No 11
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.70 E-value=1.3e-08 Score=76.81 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=40.2
Q ss_pred eEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCCC--CC-CCEEEEcC
Q 047095 117 FLTYPIELGENLSTIANMSGLSPELLQSYNRGSD--FS-SGLVFIPE 160 (188)
Q Consensus 117 ~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~~--~~-g~~l~iP~ 160 (188)
..+|+|++||||++||++|+++..+|+++|+..+ +. |+.+.||.
T Consensus 2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG 48 (165)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGGCCCTTCEEEETT
T ss_pred CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCCccCCCccccCcc
Confidence 3689999999999999999999999999999876 44 99999995
No 12
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.39 E-value=2.8e-07 Score=69.34 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=40.4
Q ss_pred ceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcc
Q 047095 51 NFSYKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVV 101 (188)
Q Consensus 51 ~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~ 101 (188)
..+|+|++||||..||+ +|+. ...+|+++|+.....+.+ |+++.||.
T Consensus 2 ~~~y~V~~GdtL~~IA~-~f~~--g~~~l~~aNp~vd~~l~~-g~~i~ip~ 48 (165)
T 4a1k_A 2 MLTYQVKQGDTLNSIAA-DFRI--STAALLQANPSLQAGLTA-GQSIVIPG 48 (165)
T ss_dssp CEEEECCTTCCHHHHHH-HTTC--CHHHHHHHCGGGGGCCCT-TCEEEETT
T ss_pred CEEEEECCCCCHHHHHH-HhCC--CHHHHHHhCccCCCccCC-CccccCcc
Confidence 46899999999999997 8985 999999999864345778 99999985
No 13
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.16 E-value=0.0019 Score=54.37 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=72.0
Q ss_pred cCceEEEecCCCcHHHHHHHHcCCCCCHHHHHHhCCC-----CCCCccCCCcEEEEcccCCCCCCc----ccCC------
Q 047095 49 ANNFSYKIISHDTYAKVAETYYANLTTVDWLRANNIF-----PDNNIPDVNTTINVVVNCSCGDKK----VSKD------ 113 (188)
Q Consensus 49 ~~~~~Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l-----~~~~i~~~Gq~L~IP~~~~~~~~~----~~~~------ 113 (188)
..|..|+|++||||.+|-+ +++. +.+++.+++.. ....|++ ||.|.+.....-.-.. ....
T Consensus 12 ~~W~~~~V~~GDTL~~IL~-r~Gl--s~~di~~i~~~~~~~~~l~~Lrp-Gq~l~i~~~~~~~l~~l~~~~~~~~~~~~v 87 (371)
T 3slu_A 12 AYWVQEAVQPGDSLADVLA-RSGM--ARDEIARITEKYGGEADLRHLRA-DQSVHVLVGGDGGAREVQFFTDEDGERNLV 87 (371)
T ss_dssp CEEEEEECCTTCCHHHHHH-HTTC--CHHHHHHHHTTC------CCBCS-SSEEEEEECTTSCEEEEEEEECCTTEEEEE
T ss_pred CceEEEEECCCCcHHHHHH-HcCC--CHHHHHHHHHhccccCchhhCCC-CCEEEEEECCCCCeEEEEEEecCCCceeEE
Confidence 4688999999999999997 7875 88888887653 2468999 9999997643210000 0000
Q ss_pred -----ccc-------------eEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCC----C---CC-CCEEEEcC
Q 047095 114 -----YGL-------------FLTYPIELGENLSTIANMSGLSPELLQSYNRGS----D---FS-SGLVFIPE 160 (188)
Q Consensus 114 -----~~~-------------~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~----~---~~-g~~l~iP~ 160 (188)
.+. ...+.+.-.++||..|++.|++.+.+++++.+. + ++ |+.+.|..
T Consensus 88 ~i~~~dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~ 160 (371)
T 3slu_A 88 ALEKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIY 160 (371)
T ss_dssp EEEEETTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEE
T ss_pred EEEecCCeeEEEeeecccceeeeEEEEEEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEE
Confidence 000 001222338899999999999998888887653 2 34 88776654
No 14
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=95.34 E-value=0.027 Score=47.26 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=39.1
Q ss_pred cceEEEEeecCCcHHHHHHHhCCCHHHHHhhcCCC-------CCC-CCEEEEcCCC
Q 047095 115 GLFLTYPIELGENLSTIANMSGLSPELLQSYNRGS-------DFS-SGLVFIPEKD 162 (188)
Q Consensus 115 ~~~~~y~V~~GDTl~~IA~~~~vs~~~l~~~N~~~-------~~~-g~~l~iP~~~ 162 (188)
.....|+|++||||.+|-+++|++..++.+++... .++ |+.|.+.+..
T Consensus 12 ~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~ 67 (371)
T 3slu_A 12 AYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVGG 67 (371)
T ss_dssp CEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEECT
T ss_pred CceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEECC
Confidence 45788999999999999999999998888886543 244 9998887653
No 15
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=82.20 E-value=0.81 Score=27.31 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=21.4
Q ss_pred eecCCc----HHHHHHHhCCCHHHHHhhc
Q 047095 122 IELGEN----LSTIANMSGLSPELLQSYN 146 (188)
Q Consensus 122 V~~GDT----l~~IA~~~~vs~~~l~~~N 146 (188)
+..|.+ +..||++|||+...|..|=
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 356778 9999999999999998883
No 16
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=72.44 E-value=3 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.8
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..|.++..||++|||+...|..|
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999888877
No 17
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=72.31 E-value=3.6 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.2
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..|-+...||+.+|++...+..|
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999888776
No 18
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=71.01 E-value=3.2 Score=27.63 Aligned_cols=29 Identities=14% Similarity=-0.064 Sum_probs=23.7
Q ss_pred EEeecCCcHHHHHHHhCCCHHHHHhhcCC
Q 047095 120 YPIELGENLSTIANMSGLSPELLQSYNRG 148 (188)
Q Consensus 120 y~V~~GDTl~~IA~~~~vs~~~l~~~N~~ 148 (188)
+....+.|+..+|++|+++.++|..|-..
T Consensus 44 ~~~~g~~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 44 AVIHGLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp HHHTTSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 34445779999999999999999999653
No 19
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=70.91 E-value=2.8 Score=27.31 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.7
Q ss_pred CCcHHHHHHHhCCCHHHHHhh
Q 047095 125 GENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 125 GDTl~~IA~~~~vs~~~l~~~ 145 (188)
|.++..||++|||+...|..|
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW 43 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNW 43 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHH
Confidence 889999999999999988888
No 20
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=68.04 E-value=3.7 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=22.0
Q ss_pred EeecCCcHHHHHHHhCCCH----HHHHhhcC
Q 047095 121 PIELGENLSTIANMSGLSP----ELLQSYNR 147 (188)
Q Consensus 121 ~V~~GDTl~~IA~~~~vs~----~~l~~~N~ 147 (188)
.+.++|||..+|++.|++. +.+.++|.
T Consensus 91 ~~~kadTleeLA~~~gid~~~L~~TV~~yN~ 121 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVVDELVQTVKNYQG 121 (160)
T ss_dssp CSEECSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3567999999999999986 46677785
No 21
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=66.52 E-value=3.3 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..|.|...||+.+|++...+..|
T Consensus 19 ~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 19 EKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 56889999999999999888776
No 22
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=57.74 E-value=3.8 Score=27.20 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.8
Q ss_pred CCcHHHHHHHhCCCHHHHHhh
Q 047095 125 GENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 125 GDTl~~IA~~~~vs~~~l~~~ 145 (188)
|.++..||++|||+...|..|
T Consensus 30 g~s~~~va~~~gIs~~tl~~W 50 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVW 50 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHH
Confidence 368999999999999988888
No 23
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=57.57 E-value=9.7 Score=21.67 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.0
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..|-|...||+.+|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999887765
No 24
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=50.23 E-value=12 Score=26.25 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.5
Q ss_pred CCcHHHHHHHhCCCHHHHHhh
Q 047095 125 GENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 125 GDTl~~IA~~~~vs~~~l~~~ 145 (188)
|.++..+|++||+|...+.+.
T Consensus 92 G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 889999999999999877654
No 25
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=45.98 E-value=16 Score=24.12 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=20.1
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..|.+...||++||++...+.+|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998777766
No 26
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=45.65 E-value=13 Score=25.96 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.6
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..|.+...||+.||++...+..|
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw 68 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKI 68 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999888777
No 27
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=42.55 E-value=19 Score=22.30 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.3
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
++|=|+..+|++.|++...|..+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999888876
No 28
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=42.26 E-value=15 Score=26.81 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.3
Q ss_pred CcHHHHHHHhCCCHHHHHhh
Q 047095 126 ENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~~ 145 (188)
+.+.++++|||+++++|.++
T Consensus 132 ~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 132 SALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 46788999999999998876
No 29
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=41.60 E-value=20 Score=22.72 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=20.8
Q ss_pred cHHHHHHHhCCCHHHHHhh-cCCCCCCCCEEEE
Q 047095 127 NLSTIANMSGLSPELLQSY-NRGSDFSSGLVFI 158 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~-N~~~~~~g~~l~i 158 (188)
++..||++|++|...+.+- +.+. -+|.+..+
T Consensus 18 sv~eLa~~l~VS~~TIRrdL~~Le-~~G~l~R~ 49 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMINAMLQQLE-SMGKAVRI 49 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH-HHTSEEEE
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHH-HCCCEEEe
Confidence 6789999999998776653 3221 01766677
No 30
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=39.69 E-value=20 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.6
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..|.+...||+.||++...+..|
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~ 42 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVY 42 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999888776
No 31
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=36.79 E-value=25 Score=22.84 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=20.4
Q ss_pred cHHHHHHHhCCCHHHHHhh-cCCCCCCCCEEEE
Q 047095 127 NLSTIANMSGLSPELLQSY-NRGSDFSSGLVFI 158 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~-N~~~~~~g~~l~i 158 (188)
++..||++|++|...+.+- +.+. -+|.+..+
T Consensus 18 sv~eLA~~l~VS~~TIRrDL~~Le-~~G~l~R~ 49 (87)
T 2k02_A 18 EAKQLSARLQTPQPLIDAMLERME-AMGKVVRI 49 (87)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHH-TTCCSEEE
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHH-HCCCEEEE
Confidence 6789999999998766553 3221 11666666
No 32
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=35.45 E-value=33 Score=20.09 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.0
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
-.|-|...||+.+|++...+...
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45889999999999998776643
No 33
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=34.57 E-value=22 Score=21.78 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=37.9
Q ss_pred EEecCCCcHHHHHHHHcCCCCCHHHHHHhCCCCCCCccCCCcEEEEcccCCCCCCcccCCccceEEEEeecCCcHHHHHH
Q 047095 54 YKIISHDTYAKVAETYYANLTTVDWLRANNIFPDNNIPDVNTTINVVVNCSCGDKKVSKDYGLFLTYPIELGENLSTIAN 133 (188)
Q Consensus 54 Y~V~~GDTL~~IA~~~y~~l~s~~~L~~~N~l~~~~i~~~Gq~L~IP~~~~~~~~~~~~~~~~~~~y~V~~GDTl~~IA~ 133 (188)
+..+.|-|...+|+ ..+. +...|.++=... ...+ .-+++..||+
T Consensus 18 ~R~~~gltq~elA~-~~gi--s~~~is~~E~G~--~~~p-------------------------------~~~~l~~ia~ 61 (78)
T 3qq6_A 18 YRKEKGYSLSELAE-KAGV--AKSYLSSIERNL--QTNP-------------------------------SIQFLEKVSA 61 (78)
T ss_dssp HHHHTTCCHHHHHH-HHTC--CHHHHHHHHTTS--CCCC-------------------------------BHHHHHHHHH
T ss_pred HHHHcCCCHHHHHH-HHCc--CHHHHHHHHcCC--CCCC-------------------------------CHHHHHHHHH
Confidence 44556788888886 6664 777776663210 0000 1257899999
Q ss_pred HhCCCHHHHHhhcC
Q 047095 134 MSGLSPELLQSYNR 147 (188)
Q Consensus 134 ~~~vs~~~l~~~N~ 147 (188)
.||+++++|.....
T Consensus 62 ~l~v~~~~l~~~~~ 75 (78)
T 3qq6_A 62 VLDVSVHTLLDEKH 75 (78)
T ss_dssp HHTCCHHHHHHSCC
T ss_pred HHCcCHHHHhCCCc
Confidence 99999999987543
No 34
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=34.50 E-value=22 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.092 Sum_probs=23.7
Q ss_pred EEEEeecCCcHHHHHHHhCCCHHHHHhhc
Q 047095 118 LTYPIELGENLSTIANMSGLSPELLQSYN 146 (188)
Q Consensus 118 ~~y~V~~GDTl~~IA~~~~vs~~~l~~~N 146 (188)
+.++..-+-|+...|++|+++.+++..|=
T Consensus 43 V~~v~~g~lS~~EAa~ry~Is~~ei~~W~ 71 (101)
T 2oa4_A 43 VRGVIYGLITLAEAKQTYGLSDEEFNSWV 71 (101)
T ss_dssp HHHHHHTTCCHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Confidence 34555667789999999999999999983
No 35
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.22 E-value=37 Score=20.07 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=18.6
Q ss_pred cCCcHHHHHHHhCCCHHHHHhh
Q 047095 124 LGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 124 ~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
.|-|+..||+.+|+|...+...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 5889999999999998776653
No 36
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=33.34 E-value=21 Score=21.61 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=19.7
Q ss_pred CcHHHHHHHhCCCHHHHHhhcCC
Q 047095 126 ENLSTIANMSGLSPELLQSYNRG 148 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~~N~~ 148 (188)
+++..||+.||+++++|......
T Consensus 45 ~~l~~ia~~l~v~~~~l~~~~~~ 67 (77)
T 2k9q_A 45 VKYIAFLRSKGVDLNALFDRIIV 67 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHSS
T ss_pred HHHHHHHHHhCcCHHHHhCcccc
Confidence 47889999999999999887654
No 37
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.56 E-value=23 Score=21.23 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=19.2
Q ss_pred CcHHHHHHHhCCCHHHHHhhcCC
Q 047095 126 ENLSTIANMSGLSPELLQSYNRG 148 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~~N~~ 148 (188)
+++..||+.||+++++|....+.
T Consensus 51 ~~l~~ia~~l~~~~~~l~~~~~~ 73 (78)
T 3b7h_A 51 TTIRKVCGTLGISVHDFFDFPPY 73 (78)
T ss_dssp HHHHHHHHHHTCCHHHHTCSTTT
T ss_pred HHHHHHHHHcCCCHHHHhcCCcc
Confidence 47889999999999999876543
No 38
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=31.41 E-value=41 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=18.6
Q ss_pred ecCCcHHHHHHHhCCCHHHHHh
Q 047095 123 ELGENLSTIANMSGLSPELLQS 144 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~ 144 (188)
..|-|...||+.+|++...+..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~ 45 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRN 45 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHH
Confidence 5788999999999999876654
No 39
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.36 E-value=26 Score=24.61 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=21.9
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhhcC
Q 047095 123 ELGENLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~N~ 147 (188)
..|.+...||++||++...+.+|=.
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5799999999999999988888843
No 40
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=31.08 E-value=32 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=17.0
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..| |...+|++.|++...|.+|
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~ 31 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNW 31 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHH
Confidence 357 7888888888888777777
No 41
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=30.96 E-value=36 Score=19.79 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.5
Q ss_pred EeecCCcHHHHHHHhCCCHHHHHhh
Q 047095 121 PIELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 121 ~V~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
..+.| +...+|++.|++...+..|
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~ 33 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQM 33 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHH
Confidence 34568 9999999999999888887
No 42
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=30.33 E-value=40 Score=20.89 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=19.2
Q ss_pred cCCcHHHHHHHhCCCHHHHH-hhc
Q 047095 124 LGENLSTIANMSGLSPELLQ-SYN 146 (188)
Q Consensus 124 ~GDTl~~IA~~~~vs~~~l~-~~N 146 (188)
+++||..-|+..|+++++|. ++|
T Consensus 39 ~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 39 QNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp GGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999999998766 445
No 43
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=29.29 E-value=55 Score=23.51 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=40.2
Q ss_pred cHHHHHHHhCCCHHHHHhh---cCCCCCC-CCEEEEcCCCCCCCCCCcc---cC-----CCCCcHHHhhhhhc
Q 047095 127 NLSTIANMSGLSPELLQSY---NRGSDFS-SGLVFIPEKDQSGKYPPLQ---MS-----RDGTDFFECASLLL 187 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~---N~~~~~~-g~~l~iP~~~~~~~~~p~~---~~-----~~~~~~~~~~~~~~ 187 (188)
|+..+|+..|++...+.++ ..+..++ |....||.......-.+.+ .. -.|.+-+|+++.|.
T Consensus 33 Tv~EVAe~LgVs~srV~~LIr~G~L~AVr~Gr~~rVP~~f~~~~g~vv~~L~G~l~vL~D~G~~d~e~~~wLf 105 (148)
T 2kfs_A 33 DLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLF 105 (148)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHTTSCCCEEETTEEEEEGGGBCTTSCBCTTHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cHHHHHHHhCCCHHHHHHHHHCCCceEEEECCEEEecHHHhccCCCccCCCccHHHHHhcCCCCHHHHHHHhc
Confidence 6789999999987665555 5555555 9899999876432111221 11 45677888888774
No 44
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.26 E-value=49 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=18.0
Q ss_pred cCCcHHHHHHHhCCCHHHHHh
Q 047095 124 LGENLSTIANMSGLSPELLQS 144 (188)
Q Consensus 124 ~GDTl~~IA~~~~vs~~~l~~ 144 (188)
.|-|+..||+.+|+|...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 578999999999999877654
No 45
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=29.17 E-value=28 Score=21.20 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=17.4
Q ss_pred CcHHHHHHHhCCCHHHHHhh
Q 047095 126 ENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~~ 145 (188)
+++..||+.||+++++|...
T Consensus 54 ~~l~~ia~~l~v~~~~l~~~ 73 (82)
T 3s8q_A 54 KSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhcC
Confidence 57899999999999988764
No 46
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=28.51 E-value=28 Score=21.46 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=17.9
Q ss_pred CcHHHHHHHhCCCHHHHHhhc
Q 047095 126 ENLSTIANMSGLSPELLQSYN 146 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~~N 146 (188)
+++..||+.||+++++|...-
T Consensus 58 ~~l~~ia~~l~v~~~~l~~~~ 78 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVAAVV 78 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHhccc
Confidence 578999999999999987653
No 47
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.07 E-value=44 Score=19.01 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.2
Q ss_pred ecCCcHHHHHHHhCCCHHHHHh
Q 047095 123 ELGENLSTIANMSGLSPELLQS 144 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~ 144 (188)
..|-|...||+..|++...+..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVET 32 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHH
Confidence 4688899999999998877654
No 48
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=25.68 E-value=38 Score=21.03 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=18.0
Q ss_pred cHHHHHHHhCCCHHHHHhhcC
Q 047095 127 NLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~N~ 147 (188)
++..+|+.+|++...|..|-.
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999999999844
No 49
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=25.43 E-value=45 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=20.4
Q ss_pred eecCCcHHHHHHHh-CCCHHHHHhh
Q 047095 122 IELGENLSTIANMS-GLSPELLQSY 145 (188)
Q Consensus 122 V~~GDTl~~IA~~~-~vs~~~l~~~ 145 (188)
...|.|...|+..| +++.+++.+.
T Consensus 61 l~~G~s~eeIl~~yP~Lt~edI~aA 85 (106)
T 2ga1_A 61 RQQGAPDKELLANYPGLTAEDLSAA 85 (106)
T ss_dssp HHTTCCHHHHHHHSTTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHCCCCCHHHHHHH
Confidence 46799999999999 8999888753
No 50
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=25.33 E-value=36 Score=20.68 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=17.0
Q ss_pred CcHHHHHHHhCCCHHHHHhh
Q 047095 126 ENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~~ 145 (188)
+++..||+.||+++++|..-
T Consensus 57 ~~l~~l~~~l~~~~~~l~~~ 76 (83)
T 3f6w_A 57 IEFMDFCRGIGTDPYALLSK 76 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 48899999999999888653
No 51
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=25.32 E-value=26 Score=24.09 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=16.3
Q ss_pred CcHHHHHHHhCCCHHHHHh
Q 047095 126 ENLSTIANMSGLSPELLQS 144 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~ 144 (188)
++|..||+-|||+++.|..
T Consensus 60 ~~l~~iA~~f~V~~~yl~~ 78 (123)
T 3qwg_A 60 ATMAALANFFRIKAAYFTD 78 (123)
T ss_dssp HHHHHHHHHTTSCTHHHHC
T ss_pred HHHHHHHHHhCCCHHHHcC
Confidence 5899999999999887764
No 52
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=25.18 E-value=36 Score=22.28 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.5
Q ss_pred CCcHHHHHHHhCCCHHHHHhhcC
Q 047095 125 GENLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 125 GDTl~~IA~~~~vs~~~l~~~N~ 147 (188)
-+++..||+.||+++++|.....
T Consensus 51 ~~~l~~la~~l~v~~~~l~~~~~ 73 (114)
T 3op9_A 51 IEKLIRLATYFHLSIDELVGYVQ 73 (114)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCHHHHhcCCC
Confidence 36889999999999999987654
No 53
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=24.97 E-value=65 Score=20.08 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=19.4
Q ss_pred cCCcHHHHHHHhCCCHHHHH-hhcC
Q 047095 124 LGENLSTIANMSGLSPELLQ-SYNR 147 (188)
Q Consensus 124 ~GDTl~~IA~~~~vs~~~l~-~~N~ 147 (188)
.++||...|+.+|+++++|. ++|.
T Consensus 37 ~~~tLeeA~~~hgiD~d~ll~eLn~ 61 (76)
T 2k53_A 37 MGESIEDACAVHGIDADKLVKELNE 61 (76)
T ss_dssp CCSBHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHH
Confidence 46899999999999997665 5564
No 54
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.83 E-value=63 Score=19.35 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.0
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
-.|-|...||+.+|++...+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~ 51 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVH 51 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999998776543
No 55
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.80 E-value=62 Score=20.02 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=19.0
Q ss_pred ecCCcHHHHHHHhCCCHHHHHh
Q 047095 123 ELGENLSTIANMSGLSPELLQS 144 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~ 144 (188)
..|-|...||+++|++...+..
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~ 55 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKV 55 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 5799999999999999877654
No 56
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=24.64 E-value=37 Score=22.83 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=18.4
Q ss_pred ecCCcHH-HHHHHhCCCHHHHHhh
Q 047095 123 ELGENLS-TIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GDTl~-~IA~~~~vs~~~l~~~ 145 (188)
..|.+.. .||+.|||+...|..|
T Consensus 22 ~~g~~~~~~~A~~~gvs~stl~~~ 45 (131)
T 1hlv_A 22 ENPDLRKGEIARRFNIPPSTLSTI 45 (131)
T ss_dssp HCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCcHHHHHHHhCCCHHHHHHH
Confidence 4566655 8999999999888777
No 57
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=24.43 E-value=27 Score=24.36 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=16.3
Q ss_pred CcHHHHHHHhCCCHHHHHh
Q 047095 126 ENLSTIANMSGLSPELLQS 144 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~ 144 (188)
|+|..||.-|||+++.|..
T Consensus 62 ~~l~~iA~~f~V~~~yl~~ 80 (135)
T 3r1f_A 62 ATMAALANFFRIKAAYFTD 80 (135)
T ss_dssp HHHHHHHHHHTSCTHHHHC
T ss_pred HHHHHHHHHhCCCHHHHcC
Confidence 5899999999999887764
No 58
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=24.28 E-value=56 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=17.1
Q ss_pred ecCC---cHHHHHHHhCCCHHHHHhh
Q 047095 123 ELGE---NLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 123 ~~GD---Tl~~IA~~~~vs~~~l~~~ 145 (188)
++|| +.-.+|++||+|...+.++
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~A 48 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 4566 5568999999988666644
No 59
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.14 E-value=38 Score=20.19 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=13.3
Q ss_pred HHHHcCCCHHHHHhcC
Q 047095 4 ISEMFDTSIDNILSFN 19 (188)
Q Consensus 4 IA~~~gvs~~~l~~~N 19 (188)
-|++.|+++++|+.+=
T Consensus 21 ~Ak~lGlsleEIrefL 36 (57)
T 1b0n_B 21 EAKEANISPEEIRKYL 36 (57)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 4889999999998763
No 60
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.88 E-value=39 Score=21.87 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=17.8
Q ss_pred CCcHHHHHHHhCCCHHHHHhh
Q 047095 125 GENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 125 GDTl~~IA~~~~vs~~~l~~~ 145 (188)
-+++..||+.||+++++|...
T Consensus 70 ~~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 70 IKSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHhcc
Confidence 358899999999999988754
No 61
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=23.30 E-value=66 Score=21.30 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=14.6
Q ss_pred cHHHHHHHhCCCHHHHHhh
Q 047095 127 NLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~ 145 (188)
+.-.+|++||+|...+.++
T Consensus 35 s~~~La~~~~vSr~tvr~a 53 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKA 53 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 4568999999988666554
No 62
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=23.05 E-value=59 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=17.9
Q ss_pred CCcHHHHHHHhCCCHHHHHhh
Q 047095 125 GENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 125 GDTl~~IA~~~~vs~~~l~~~ 145 (188)
|=|+.+||+.+|+|...+.++
T Consensus 20 ~~ti~dlA~~~gVS~~TVsR~ 40 (93)
T 2l0k_A 20 KKTVRVIAKEFGVSKSTVHKD 40 (93)
T ss_dssp CCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 458999999999999887765
No 63
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=22.83 E-value=39 Score=18.54 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=15.5
Q ss_pred cHHHHHHHhCCCHHHHHhh
Q 047095 127 NLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~ 145 (188)
++..+|+.+|++.+++.+.
T Consensus 4 rv~~lAkel~~~~k~l~~~ 22 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQ 22 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 4678999999999877764
No 64
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=22.72 E-value=72 Score=19.89 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=18.4
Q ss_pred cCCcHHHHHHHhCCCHHHHHhh
Q 047095 124 LGENLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 124 ~GDTl~~IA~~~~vs~~~l~~~ 145 (188)
.|-|+..||..+|+|...+...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~ 58 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQI 58 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 5789999999999998776543
No 65
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=22.54 E-value=82 Score=20.11 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.2
Q ss_pred EEEEeecCCcHHHHHHHhCCC
Q 047095 118 LTYPIELGENLSTIANMSGLS 138 (188)
Q Consensus 118 ~~y~V~~GDTl~~IA~~~~vs 138 (188)
.++.+.+|+||...|++.|+.
T Consensus 17 ~~~~~~~g~tlL~a~~~~gi~ 37 (98)
T 1jq4_A 17 LRFECRSDEDVITAALRQNIF 37 (98)
T ss_dssp EEEEEESCCTHHHHHHHHTCC
T ss_pred EEEEeCCCChHHHHHHHcCCC
Confidence 567889999999999998875
No 66
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=22.36 E-value=81 Score=20.10 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=18.5
Q ss_pred EEEEeecCCcHHHHHHHhCCCH
Q 047095 118 LTYPIELGENLSTIANMSGLSP 139 (188)
Q Consensus 118 ~~y~V~~GDTl~~IA~~~~vs~ 139 (188)
.++.|.+|+||...|++.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (98)
T 1frd_A 16 TTIEIDEETTILDGAEENGIEL 37 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCc
Confidence 5678899999999999988743
No 67
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=22.00 E-value=80 Score=19.93 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.4
Q ss_pred EEEEeecCCcHHHHHHHhCCCH
Q 047095 118 LTYPIELGENLSTIANMSGLSP 139 (188)
Q Consensus 118 ~~y~V~~GDTl~~IA~~~~vs~ 139 (188)
.++.+.+|+||...|++-|+.+
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi~i 34 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGYDL 34 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCC
Confidence 4678899999999999988743
No 68
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.91 E-value=72 Score=17.95 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=20.0
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhhcC
Q 047095 123 ELGENLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~N~ 147 (188)
+.|=|...+|++.|++...+.+|-+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4577888899999999888888744
No 69
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.82 E-value=63 Score=21.26 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.1
Q ss_pred cHHHHHHHhCCCHHHHHhhcC
Q 047095 127 NLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~N~ 147 (188)
|+..+|+.+|++...|..|-.
T Consensus 4 ~i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 4 QVKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp CHHHHHHHHSCCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 567899999999999999843
No 70
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=21.66 E-value=82 Score=20.56 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEeecCCcHHHHHHHhCCCH
Q 047095 118 LTYPIELGENLSTIANMSGLSP 139 (188)
Q Consensus 118 ~~y~V~~GDTl~~IA~~~~vs~ 139 (188)
.+..+..|+||...|.+.|+.+
T Consensus 19 ~~v~~~~g~tLL~aa~~~gi~i 40 (108)
T 2bt6_A 19 LTTKGKIGDSLLDVVVQNNLDI 40 (108)
T ss_dssp EEEEEETTCBHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHcCCCC
Confidence 4677899999999999999864
No 71
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=21.44 E-value=34 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.2
Q ss_pred eecCCcHHHHHHHhCC-CHHHHHhh
Q 047095 122 IELGENLSTIANMSGL-SPELLQSY 145 (188)
Q Consensus 122 V~~GDTl~~IA~~~~v-s~~~l~~~ 145 (188)
+..|.+|.+|++.+|+ +...+.+|
T Consensus 25 i~~G~sl~~i~~~~~~ps~~T~~~W 49 (140)
T 4dyq_A 25 LSSGESLLKVCKRPGMPDKSTVFRW 49 (140)
T ss_dssp HHTTCCHHHHHTSTTCCCHHHHHHH
T ss_pred HHCCCcHHHHHhcCCCCCHHHHHHH
Confidence 5679999999999999 88888877
No 72
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=21.35 E-value=72 Score=18.91 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.7
Q ss_pred cHHHHHHHhCCCHHHHHhhcC
Q 047095 127 NLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~N~ 147 (188)
|...+|+.+|+|...|.+|=.
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456789999999999999954
No 73
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.27 E-value=68 Score=18.19 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.2
Q ss_pred ecCCcHHHHHHHhCCCHHHHHhhcC
Q 047095 123 ELGENLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~~N~ 147 (188)
+.|=|...+|++.|++...+.+|-+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4577888999999999988888844
No 74
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=21.26 E-value=85 Score=20.24 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=18.5
Q ss_pred EEEEeecCCcHHHHHHHhCCCH
Q 047095 118 LTYPIELGENLSTIANMSGLSP 139 (188)
Q Consensus 118 ~~y~V~~GDTl~~IA~~~~vs~ 139 (188)
.++.+..|+||...|++.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNIDL 37 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTCCC
T ss_pred EEEEECCCCHHHHHHHHcCCCc
Confidence 4678899999999999988753
No 75
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.14 E-value=82 Score=18.84 Aligned_cols=18 Identities=6% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHHHHhCCCHHHHHhh
Q 047095 128 LSTIANMSGLSPELLQSY 145 (188)
Q Consensus 128 l~~IA~~~~vs~~~l~~~ 145 (188)
+..+|.+|||+-+++..+
T Consensus 28 I~~~a~kygV~kdeV~~~ 45 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVKL 45 (59)
T ss_dssp HHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 567899999988766543
No 76
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.05 E-value=75 Score=19.02 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=17.0
Q ss_pred cHHHHHHHhCCCHHHHHhh-cC
Q 047095 127 NLSTIANMSGLSPELLQSY-NR 147 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~-N~ 147 (188)
|+.+||++-|++...+-.+ |+
T Consensus 2 T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 6789999999998877765 44
No 77
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.04 E-value=79 Score=19.82 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.5
Q ss_pred ecCCcHHHHHHHhCCCHHHHHh
Q 047095 123 ELGENLSTIANMSGLSPELLQS 144 (188)
Q Consensus 123 ~~GDTl~~IA~~~~vs~~~l~~ 144 (188)
-.|-|+..||+.+|++...+..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~ 72 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKS 72 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4588999999999999877654
No 78
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.90 E-value=70 Score=20.35 Aligned_cols=19 Identities=0% Similarity=0.121 Sum_probs=16.1
Q ss_pred cHHHHHHHhCCCHHHHHhh
Q 047095 127 NLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~ 145 (188)
++..+|+.|+++.+++.++
T Consensus 32 sl~~La~ll~ls~~~vE~~ 50 (84)
T 1ufm_A 32 TFEELGALLEIPAAKAEKI 50 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHH
Confidence 6889999999999777665
No 79
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=20.72 E-value=77 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.0
Q ss_pred cCCcHHHHHHHhCCCHHHHHhhcC
Q 047095 124 LGENLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 124 ~GDTl~~IA~~~~vs~~~l~~~N~ 147 (188)
.|=|+..||++.||+...|.+|-+
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 366999999999999999999854
No 80
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=20.72 E-value=64 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.6
Q ss_pred cHHHHHHHhCCCHHHHHhh
Q 047095 127 NLSTIANMSGLSPELLQSY 145 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~ 145 (188)
+...||++||+|...+.+.
T Consensus 45 s~~eLa~~lgVSr~tVr~a 63 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNA 63 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 4568999999988666543
No 81
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.51 E-value=77 Score=18.39 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=18.8
Q ss_pred CcHHHHHHHhCCCHHHHHhhc
Q 047095 126 ENLSTIANMSGLSPELLQSYN 146 (188)
Q Consensus 126 DTl~~IA~~~~vs~~~l~~~N 146 (188)
-|-..+|++.|++...+.+|-
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 377899999999999999995
No 82
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.37 E-value=72 Score=20.97 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=18.2
Q ss_pred cHHHHHHHhCCCHHHHHhhcC
Q 047095 127 NLSTIANMSGLSPELLQSYNR 147 (188)
Q Consensus 127 Tl~~IA~~~~vs~~~l~~~N~ 147 (188)
|+..+|+.+|++...|..|-.
T Consensus 3 ~i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 567899999999999999843
No 83
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=20.09 E-value=79 Score=19.45 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCHHHHHhh
Q 047095 128 LSTIANMSGLSPELLQSY 145 (188)
Q Consensus 128 l~~IA~~~~vs~~~l~~~ 145 (188)
...+|+..||+...+.+|
T Consensus 13 ~~~lA~~lGVs~~aVs~W 30 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQW 30 (71)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 678999999999999999
Done!