BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047097
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 183/393 (46%), Gaps = 48/393 (12%)
Query: 72 RHQRVTRLDLRNQSIGGTLSPYVGNLSF-LRYINLANNGFLGEIPPQIGR--QDMLEGLV 128
+ + + LDL G L + NLS L ++L++N F G I P + + ++ L+ L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 129 LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
L NN F+G IP LS CS L+ L + NYL G IP+++G L KL L ++ N + G++P
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP- 456
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISL 248
L+ ++ L L + FN +G IP + N ++L ISL
Sbjct: 457 ----------------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF------ 302
S NR TG +P G L NL L + N+F+G+IP L + L ++ + N F
Sbjct: 495 SNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 303 -----SGRVSVDFSRLKNLSWL-NMGINNLGTGTANELDFINLLTNCSKLERLYFNRN-- 354
SG+++ +F K ++ N G+ G N L+F + + +L RL RN
Sbjct: 554 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS--EQLNRLS-TRNPC 610
Query: 355 ----RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
R G + + ++ + M N +SG IP EI + L L + N ++G+IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 411 PEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
E+G+ IP ++ LT+L
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/418 (29%), Positives = 191/418 (45%), Gaps = 47/418 (11%)
Query: 56 NNSMNLCQWTGVICGR-RHQRVTRLDLRNQSIGGT------LSPYVGNLSFLRYINLANN 108
N S N + G + G + + LDL SI G LS G L +++ ++ N
Sbjct: 129 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGN 185
Query: 109 GFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGG 168
G++ + R LE L +S+N+FS IP L CS L L + N L G+ AI
Sbjct: 186 KISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST 242
Query: 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQ--LRNLLLLDIAF 226
+L+ L I N G +P L SL + EN G I + L LD++
Sbjct: 243 CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL 286
NHF G +PP + S LE ++LS N F+G LP+DT + + L+ L + N F+G +P SL
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 287 SN-ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG-TGTANELDFINLLTNCS 344
+N ++ L ++ S N FSG + + + + + + N G TG L+NCS
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-----TLSNCS 415
Query: 345 KLERLYFNRNRFEGELPHSVANLS-----------------------STIKQIAMGRNRI 381
+L L+ + N G +P S+ +LS T++ + + N +
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 382 SGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGN 439
+G IP + +LNW+++ N+LTG IP IG +IP+ LG+
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 197/466 (42%), Gaps = 98/466 (21%)
Query: 38 LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLD----------------- 80
L++ K L D + W+++ N C + GV C R +VT +D
Sbjct: 14 LISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSL 70
Query: 81 ----------LRNQSIGGTLSPY-------------------------VGNLSFLRYINL 105
L N I G++S + +G+ S L+++N+
Sbjct: 71 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 130
Query: 106 ANN--GFLGEIPPQIGRQDMLEGLVLSNNSFSGT--IPTNLSR-CSNLIELFVDTNYLVG 160
++N F G++ + + + LE L LS NS SG + LS C L L + N + G
Sbjct: 131 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 161 EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID-SLVQLRNL 219
++ + LE L + N+ + +P +G+ S+L D+ N L G ++ L
Sbjct: 190 DV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 246
Query: 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279
LL+I+ N F G IPP + SL+ +SL+EN+FTG +P L L +GN+F
Sbjct: 247 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339
G++P + S LE + S N FSG + +D
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMD-----------------------------T 335
Query: 340 LTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK--LVSLNW 397
L L+ L + N F GELP S+ NLS+++ + + N SG I P + + +L
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 398 LTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
L + N TG IPP + +IPSSLG+L+ L
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 183/393 (46%), Gaps = 48/393 (12%)
Query: 72 RHQRVTRLDLRNQSIGGTLSPYVGNLSF-LRYINLANNGFLGEIPPQIGR--QDMLEGLV 128
+ + + LDL G L + NLS L ++L++N F G I P + + ++ L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 129 LSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPA 188
L NN F+G IP LS CS L+ L + NYL G IP+++G L KL L ++ N + G++P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP- 459
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISL 248
L+ ++ L L + FN +G IP + N ++L ISL
Sbjct: 460 ----------------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF------ 302
S NR TG +P G L NL L + N+F+G+IP L + L ++ + N F
Sbjct: 498 SNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 303 -----SGRVSVDFSRLKNLSWL-NMGINNLGTGTANELDFINLLTNCSKLERLYFNRN-- 354
SG+++ +F K ++ N G+ G N L+F + + +L RL RN
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS--EQLNRLS-TRNPC 613
Query: 355 ----RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
R G + + ++ + M N +SG IP EI + L L + N ++G+IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 411 PEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
E+G+ IP ++ LT+L
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/418 (29%), Positives = 191/418 (45%), Gaps = 47/418 (11%)
Query: 56 NNSMNLCQWTGVICGR-RHQRVTRLDLRNQSIGGT------LSPYVGNLSFLRYINLANN 108
N S N + G + G + + LDL SI G LS G L +++ ++ N
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGN 188
Query: 109 GFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGG 168
G++ + R LE L +S+N+FS IP L CS L L + N L G+ AI
Sbjct: 189 KISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQ--LRNLLLLDIAF 226
+L+ L I N G +P L SL + EN G I + L LD++
Sbjct: 246 CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL 286
NHF G +PP + S LE ++LS N F+G LP+DT + + L+ L + N F+G +P SL
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 287 SN-ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG-TGTANELDFINLLTNCS 344
+N ++ L ++ S N FSG + + + + + + N G TG L+NCS
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-----TLSNCS 418
Query: 345 KLERLYFNRNRFEGELPHSVANLS-----------------------STIKQIAMGRNRI 381
+L L+ + N G +P S+ +LS T++ + + N +
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 382 SGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGN 439
+G IP + +LNW+++ N+LTG IP IG +IP+ LG+
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 197/466 (42%), Gaps = 98/466 (21%)
Query: 38 LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLD----------------- 80
L++ K L D + W+++ N C + GV C R +VT +D
Sbjct: 17 LISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSL 73
Query: 81 ----------LRNQSIGGTLSPY-------------------------VGNLSFLRYINL 105
L N I G++S + +G+ S L+++N+
Sbjct: 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133
Query: 106 ANN--GFLGEIPPQIGRQDMLEGLVLSNNSFSGT--IPTNLSR-CSNLIELFVDTNYLVG 160
++N F G++ + + + LE L LS NS SG + LS C L L + N + G
Sbjct: 134 SSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 161 EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID-SLVQLRNL 219
++ + LE L + N+ + +P +G+ S+L D+ N L G ++ L
Sbjct: 193 DV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249
Query: 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279
LL+I+ N F G IPP + SL+ +SL+EN+FTG +P L L +GN+F
Sbjct: 250 KLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339
G++P + S LE + S N FSG + +D
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMD-----------------------------T 338
Query: 340 LTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK--LVSLNW 397
L L+ L + N F GELP S+ NLS+++ + + N SG I P + + +L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 398 LTIDRNQLTGTIPPEIGEXXXXXXXXXXXXXXXXSIPSSLGNLTLL 443
L + N TG IPP + +IPSSLG+L+ L
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 154/384 (40%), Gaps = 106/384 (27%)
Query: 31 NETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQ--WTGVICGRRHQ--RVTRLDLRNQSI 86
N D+ ALL IK L +P + SSW + + C W GV+C Q RV LDL ++
Sbjct: 4 NPQDKQALLQIKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 87 GGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCS 146
P +L+ L Y+N ++G I
Sbjct: 63 PKPY-PIPSSLANLPYLNFL---YIGGI-------------------------------- 86
Query: 147 NLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL 206
N LVG IP AI L +L L+I H +++G +P
Sbjct: 87 ---------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------------- 118
Query: 207 WGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLP 266
D L Q++ L+ LD ++N SGT+PP I ++ +L I+ NR +G++P G
Sbjct: 119 ----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326
++ + N TG IP + +N + L ++ SRN G SV F KN +++ N+L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 327 GTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP 386
F+ + LS + + + NRI GT+P
Sbjct: 234 A-----------------------FDLGK---------VGLSKNLNGLDLRNNRIYGTLP 261
Query: 387 PEIRKLVSLNWLTIDRNQLTGTIP 410
+ +L L+ L + N L G IP
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 33/154 (21%)
Query: 263 VNLPNLRQLSPNG-NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321
NLP L L G NN G IP +++ ++L + + SG + S++K L L+
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD- 131
Query: 322 GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRI 381
F+ N G LP S+++L + + I NRI
Sbjct: 132 -----------------------------FSYNALSGTLPPSISSLPNLVG-ITFDGNRI 161
Query: 382 SGTIPPEIRKLVSL-NWLTIDRNQLTGTIPPEIG 414
SG IP L +TI RN+LTG IPP
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 311 SRLKNLSWLNM----GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVAN 366
S L NL +LN GINNL + ++L LY G +P ++
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAI------AKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 367 LSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE 415
+ T+ + N +SGT+PP I L +L +T D N+++G IP G
Sbjct: 124 IK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 174/387 (44%), Gaps = 67/387 (17%)
Query: 24 KTICANSNETDRLA---LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-QRVTRL 79
KT+ +N TD ++ L + + D LG+ S I G + +T++
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------------IDGVEYLNNLTQI 68
Query: 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139
+ N + ++P + NL+ L I L NN + +I P + L GL L NN + P
Sbjct: 69 NFSNNQLTD-ITP-LKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 124
Query: 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
L +NL L + +N + +I +A+ GL L++L N +T P + NL++L
Sbjct: 125 --LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERL 178
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ N + I L +L NL L N S P I +++L+ +SL+ N+ +
Sbjct: 179 DISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---I 232
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVS--------------------LSNASRLEMIEFSR 299
T +L NL L N + P+S L+ + L +E +
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + S LKNL++L + NN+ I+ +++ +KL+RL+F+ N+
Sbjct: 293 NQLEDISPI--SNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFSNNKVSDV 342
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIP 386
S+ANL++ I ++ G N+IS P
Sbjct: 343 --SSLANLTN-INWLSAGHNQISDLTP 366
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 175/387 (45%), Gaps = 68/387 (17%)
Query: 24 KTICANSNETDRLA---LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-QRVTRL 79
KT+ +N TD ++ L + + D LG+ S I G + +T++
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------------IDGVEYLNNLTQI 68
Query: 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139
+ N + ++P + NL+ L I L NN + +I P + L GL L NN + P
Sbjct: 69 NFSNNQLTD-ITP-LKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 124
Query: 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
L +NL L + +N + +I +A+ GL L++L F N +T P + NL++L
Sbjct: 125 --LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERL 177
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ N + I L +L NL L N S P I +++L+ +SL+ N+ +
Sbjct: 178 DISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---I 231
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVS--------------------LSNASRLEMIEFSR 299
T +L NL L N + P+S L+ + L +E +
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + S LKNL++L + NN+ I+ +++ +KL+RL+F+ N+
Sbjct: 292 NQLEDISPI--SNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFSNNKVSDV 341
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIP 386
S+ANL++ I ++ G N+IS P
Sbjct: 342 --SSLANLTN-INWLSAGHNQISDLTP 365
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 176/411 (42%), Gaps = 91/411 (22%)
Query: 24 KTICANSNETDRLA---LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-QRVTRL 79
KT+ +N TD ++ L + + D LG+ S I G + +T++
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------------IDGVEYLNNLTQI 68
Query: 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139
+ N + ++P + NL+ L I L NN + +I P + L GL L NN + P
Sbjct: 69 NFSNNQLTD-ITP-LKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 124
Query: 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
L +NL L + +N + +I +A+ GL L++L N +T P + NL++L
Sbjct: 125 --LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERL 178
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ N + I L +L NL L N S P I +++L+ +SL+ N+ +
Sbjct: 179 DISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---I 232
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVS--------------------LSNASRLEMIEFSR 299
T +L NL L N + P+S L+ + L +E +
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + S LKNL++L + NN+ I+ +++ +KL+RL+F N+
Sbjct: 293 NQLEDISPI--SNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFYNNK---- 338
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
V+++SS + L ++NWL+ NQ++ P
Sbjct: 339 ----VSDVSS-------------------LANLTNINWLSAGHNQISDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 176/411 (42%), Gaps = 91/411 (22%)
Query: 24 KTICANSNETDRLA---LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-QRVTRL 79
KT+ +N TD ++ L + + D LG+ S I G + +T++
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------------IDGVEYLNNLTQI 68
Query: 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139
+ N + ++P + NL+ L I L NN + +I P + L GL L NN + P
Sbjct: 69 NFSNNQLTD-ITP-LKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 124
Query: 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
L +NL L + +N + +I +A+ GL L++L N +T P + NL++L
Sbjct: 125 --LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERL 178
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ N + I L +L NL L N S P I +++L+ +SL+ N+ +
Sbjct: 179 DISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---I 232
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVS--------------------LSNASRLEMIEFSR 299
T +L NL L N + P+S L+ + L +E +
Sbjct: 233 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + S LKNL++L + NN+ I+ +++ +KL+RL+F N+
Sbjct: 293 NQLEDISPI--SNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFYNNK---- 338
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
V+++SS + L ++NWL+ NQ++ P
Sbjct: 339 ----VSDVSS-------------------LANLTNINWLSAGHNQISDLTP 366
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 177/411 (43%), Gaps = 92/411 (22%)
Query: 24 KTICANSNETDRLA---LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-QRVTRL 79
KT+ +N TD ++ L + + D LG+ S I G + +T++
Sbjct: 28 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------------IDGVEYLNNLTQI 73
Query: 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139
+ N + ++P + NL+ L I L NN + +I P + L GL L NN + P
Sbjct: 74 NFSNNQLTD-ITP-LKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 129
Query: 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
L +NL L + +N + +I +A+ GL L++L F N +T P + NL++L
Sbjct: 130 --LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERL 182
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ N + I L +L NL L N S P I +++L+ +SL+ N+ +
Sbjct: 183 DISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---I 236
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVS--------------------LSNASRLEMIEFSR 299
T +L NL L N + P+S L+ + L +E +
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + S LKNL++L + NN+ I+ +++ +KL+RL+F N+
Sbjct: 297 NQLEDISPI--SNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFYNNK---- 342
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
V+++SS + L ++NWL+ NQ++ P
Sbjct: 343 ----VSDVSS-------------------LANLTNINWLSAGHNQISDLTP 370
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 177/411 (43%), Gaps = 92/411 (22%)
Query: 24 KTICANSNETDRLA---LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-QRVTRL 79
KT+ +N TD ++ L + + D LG+ S I G + +T++
Sbjct: 27 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------------IDGVEYLNNLTQI 72
Query: 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139
+ N + ++P + NL+ L I L NN + +I P + L GL L NN + P
Sbjct: 73 NFSNNQLTD-ITP-LKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 128
Query: 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
L +NL L + +N + +I +A+ GL L++L F N +T P + NL++L
Sbjct: 129 --LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERL 181
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ N + I L +L NL L N S P I +++L+ +SL+ N+ +
Sbjct: 182 DISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---I 235
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVS--------------------LSNASRLEMIEFSR 299
T +L NL L N + P+S L+ + L +E +
Sbjct: 236 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 295
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + S LKNL++L + NN+ I+ +++ +KL+RL+F N+
Sbjct: 296 NQLEDISPI--SNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFANNK---- 341
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
V+++SS + L ++NWL+ NQ++ P
Sbjct: 342 ----VSDVSS-------------------LANLTNINWLSAGHNQISDLTP 369
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 177/411 (43%), Gaps = 92/411 (22%)
Query: 24 KTICANSNETDRLA---LLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRH-QRVTRL 79
KT+ +N TD ++ L + + D LG+ S I G + +T++
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--------------IDGVEYLNNLTQI 68
Query: 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139
+ N + ++P + NL+ L I L NN + +I P + L GL L NN + P
Sbjct: 69 NFSNNQLTD-ITP-LKNLTKLVDI-LMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 124
Query: 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
L +NL L + +N + +I +A+ GL L++L F N +T P + NL++L
Sbjct: 125 --LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERL 177
Query: 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ N + I L +L NL L N S P I +++L+ +SL+ N+ +
Sbjct: 178 DISSNKV-SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD---I 231
Query: 260 DTGVNLPNLRQLSPNGNNFTGSIPVS--------------------LSNASRLEMIEFSR 299
T +L NL L N + P+S L+ + L +E +
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359
NQ + S LKNL++L + NN+ I+ +++ +KL+RL+F N+
Sbjct: 292 NQLEDISPI--SNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFYNNK---- 337
Query: 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
V+++SS + L ++NWL+ NQ++ P
Sbjct: 338 ----VSDVSS-------------------LANLTNINWLSAGHNQISDLTP 365
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 213 LVQLRNLLLLDIAFNH----FSGTIPPPIFN-ISSLEVISLSENRFTGSLPVDTGVNLPN 267
+ LRNL+ LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
L L + P + ++ S L+++ S N F + + L +L L+ +N++
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 328 TGTANELD-------FINLLTN 342
T EL F+NL N
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQN 258
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHFSGTIP 234
I H H LSSL + N D +LRNL LD++ P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 235 PPIFNISSLEVISLSENRF 253
++SSL+V+++S N F
Sbjct: 193 TAFNSLSSLQVLNMSHNNF 211
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 213 LVQLRNLLLLDIAFNH----FSGTIPPPIFN-ISSLEVISLSENRFTGSLPVDTGVNLPN 267
+ LRNL+ LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
L L + P + ++ S L+++ S N F + + L +L L+ +N++
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 328 TGTANELD-------FINLLTN 342
T EL F+NL N
Sbjct: 556 TSKKQELQHFPSSLAFLNLTQN 577
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHFSGTIP 234
I H H LSSL + N D +LRNL LD++ P
Sbjct: 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Query: 235 PPIFNISSLEVISLSENRF 253
++SSL+V+++S N F
Sbjct: 512 TAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 213 LVQLRNLLLLDIAFNH----FSGTIPPPIFN-ISSLEVISLSENRFTGSLPVDTGVNLPN 267
+ LRNL+ LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327
L L + P + ++ S L+++ S N F + + L +L L+ +N++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 328 TGTANELD-------FINLLTN 342
T EL F+NL N
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQN 553
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 28/257 (10%)
Query: 109 GFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPA-AIG 167
L +P I + L+ LVL+ NSF N + +L +L++ N ++ +
Sbjct: 287 AHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLE 346
Query: 168 GLFKLERLFIFHNHITGQ--LPASIGNLSSLLAFDVRENILWGRID-SLVQLRNLLLLDI 224
L L++L + H+ I + NL L ++ N G D + + L LLD+
Sbjct: 347 KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDV 406
Query: 225 AFNHFSGTIP-PPIFNISSLEVISLSENRFTGSLPVDTG-----VNLPNLRQLSPNGNNF 278
AF H P P N+ L V++LS +DT L +LR L+ GN+F
Sbjct: 407 AFTHLHVKAPHSPFQNLHLLRVLNLSH------CLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 279 T-GSIPVS--LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335
GSI + L LE++ S F L+N++ L++ N+L T + +D
Sbjct: 461 QDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL---TGDSMD 517
Query: 336 FINLLTNCSKLERLYFN 352
+ S L+ LY N
Sbjct: 518 AL------SHLKGLYLN 528
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 114 IPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173
I I + D L L L+ NS + +P + SNL L + N L +PA +G F+L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENIL 206
+ F N +T LP GNL +L V N L
Sbjct: 297 YFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPL 328
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 52/176 (29%)
Query: 203 ENILWGRIDSLVQLRNLLLLDIAFNHFS--------------GTIPPPIFNISSLEVISL 248
++ LW +D L NL + +I+ N F +P I N+S+L V+ L
Sbjct: 222 DDQLWHALD----LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Query: 249 SENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV 308
S NR T S+P L + +L+ F N + +
Sbjct: 278 SHNRLT--------------------------SLPAELGSCFQLKYFYFFDNMVTT-LPW 310
Query: 309 DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNR-NRFEGELPHS 363
+F L NL +L + N L E F+ +LT S +++ R NR E LPH
Sbjct: 311 EFGNLCNLQFLGVEGNPL------EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW---GRID 211
+N + I A I L RL++ N +T +LPA I NLS+L D+ N L +
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290
Query: 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN 251
S QL+ F++ T+P N+ +L+ + + N
Sbjct: 291 SCFQLKYFYF----FDNMVTTLPWEFGNLCNLQFLGVEGN 326
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 213 LVQLRNLLLLDIAFNH----FSGTIPPPIFN-ISSLEVISLSENRFTGSLPVDTGVNLPN 267
+ LRNL+ LDI+ H F+G IFN +SSLEV+ ++ N F + D L N
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS--WLN 320
L L + P + ++ S L+++ + NQ F RL +L WL+
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 80/387 (20%), Positives = 152/387 (39%), Gaps = 51/387 (13%)
Query: 71 RRHQRVTRLDL-RNQSIGGTLSPYVGNLSFLRYINLANNGFL----GEIPPQIGRQDMLE 125
R + +TRLDL +NQ L P G L+ L+ I+ ++N E+ P G+ L
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK--TLS 177
Query: 126 GLVLSNNSFSGTIPTNLSRCSN-----LIELF-VDTNYLVGEIPAAIGGLFKLERLF--I 177
L+ NS + + +C N ++E+ V N +I + F I
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 178 FHNHITGQLPASIG---------------NLSSLLAFDVRENILWGRIDSLVQ-LRNLLL 221
+HI G A G SS+ D+ ++ + + L++L +
Sbjct: 238 LAHHIMG---AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
L++A+N + + + +L+V++LS N G L LP + + N+
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 282 IPVSLSNASRLEMIEFSRNQFSG--------RVSVDFSRLKNLSWLNMGIN--NLGTGTA 331
+ +L+ ++ N + + + ++L L +N+ N +L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 332 NELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-- 389
LD + L L+ L N+NRF + + +++Q+ +G N + E+
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473
Query: 390 ---RKLVSLNWLTIDRNQLTGTIPPEI 413
L L L ++ N L ++PP +
Sbjct: 474 DVFEGLSHLQVLYLNHNYL-NSLPPGV 499
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 30/253 (11%)
Query: 111 LGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEI-PAAIGGL 169
L E+P + L+ LVLS N F + S +L L + N E+ + L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 170 FKLERLFIFHNHITGQLPASIG--NLSSLLAFDVRENI-LWGRIDSLVQLRNLLLLDIAF 226
L L + H+ I ++ NLS L + ++ N L + ++ + L LLD+AF
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 227 NHFS-GTIPPPIFNISSLEVISL--------SENRFTGSLPVDTGVNLPNLRQLSPNGNN 277
P N+ L+V++L SE F G LP L+ L+ GN+
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------LPALQHLNLQGNH 460
Query: 278 F-TGSIPV--SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANEL 334
F G+I SL RLE++ S S F+ LK ++ +++ N L + + L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 335 D-----FINLLTN 342
++NL +N
Sbjct: 521 SHLKGIYLNLASN 533
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 24 KTICANSNETDRLALLAIKSQLHD--PLGVTSSWNN-SMNLCQWTGVICGRRHQRVTRLD 80
K + +N TD +L +Q+ D PL +S + + + Q T + R+ L
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLK 227
Query: 81 LRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDM--LEGLVLSNNSFSGTI 138
+ N I LSP + NLS L ++ + N +I +D+ L+ L + +N S
Sbjct: 228 IGNNKITD-LSP-LANLSQLTWLEIGTN----QISDINAVKDLTKLKXLNVGSNQISDI- 280
Query: 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP 187
+ L+ S L LF++ N L E IGGL L LF+ NHIT P
Sbjct: 281 -SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS-----WL 319
L NL L+ NGN T P LSN +L + N+ + D S L+NL+ +L
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-----DISALQNLTNLRELYL 117
Query: 320 N-------------MGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVAN 366
N +L G + L ++ L+N + L L ++ + P +AN
Sbjct: 118 NEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IAN 175
Query: 367 LSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP 410
L+ + +++ N+I P + L SL++ T NQ+T P
Sbjct: 176 LTD-LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 216 LRNLLLLDIAFNHFSGTIPPPIFN-ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274
L L L++ +N T+ +F+ ++ L + L+ N+ SLP+ +L L +L
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 275 GNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT---GT 330
GN S+P + ++L+ + + NQ + F +L NL L++ N L + G
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 331 ANELDFINLLT------NCSKLERLYFNR 353
+ L + +T +CS+ E LY ++
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETLYLSQ 203
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 310 FSRLKNLSWLNMGINNLGTGTANELDFIN------------------LLTNCSKLERLYF 351
F L L+WLN+ N L T +A D + + + ++L++LY
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405
N+ + LP V + + +K++ + N++ KL +L L++ NQL
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 19/131 (14%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFIN-------------- 338
E ++ + F L L+WLN+ N L T +A D +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 339 ----LLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVS 394
+ + ++L++LY N+ + LP V + + +K++ + N++ KL +
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 395 LNWLTIDRNQL 405
L L++ NQL
Sbjct: 157 LQTLSLSTNQL 167
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 216 LRNLLLLDIAFNHFSGTIPPPIFN-ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274
L L L++ +N T+ +F+ ++ L + L+ N+ SLP+ +L L +L
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 275 GNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT---GT 330
GN S+P + ++L+ + + NQ + F +L NL L++ N L + G
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 331 ANELDFINLLT------NCSKLERLYFNR 353
+ L + +T +CS+ E LY ++
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCEILYLSQ 203
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 123 MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI
Sbjct: 130 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 185
Query: 183 TG-QLPASIGNLSSLLAF 199
+ + A + NL L F
Sbjct: 186 SDLRALAGLKNLDVLELF 203
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI+
Sbjct: 154 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 209
Query: 184 G-QLPASIGNLSSLLAF 199
+ A + NL L F
Sbjct: 210 DLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI+
Sbjct: 154 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 209
Query: 184 G-QLPASIGNLSSLLAF 199
+ A + NL L F
Sbjct: 210 DLRALAGLKNLDVLELF 226
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCS 344
L+N L ++E NQ F +L NL++LN+ N L + D LTN +
Sbjct: 107 KLTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD---KLTNLT 160
Query: 345 KLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQ 404
+L+ Y N+ + LP V + + +K + + +N++ +L SL ++ + N
Sbjct: 161 ELDLSY---NQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Query: 405 LTGTIP 410
T P
Sbjct: 217 WDCTCP 222
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
L L+L+ N + +NL EL + N L L L L + HN +
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 184 GQLPASIGNLSSLLAFDVRENILW----GRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFN 239
L++L D+ N L G D L QL++L L + + ++P +F+
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL----YQNQLKSVPDGVFD 202
Query: 240 -ISSLEVISLSENRFTGSLP 258
++SL+ I L +N + + P
Sbjct: 203 RLTSLQYIWLHDNPWDCTCP 222
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 123 MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI
Sbjct: 133 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 188
Query: 183 TG-QLPASIGNLSSLLAF 199
+ + A + NL L F
Sbjct: 189 SDLRALAGLKNLDVLELF 206
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI+
Sbjct: 154 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 209
Query: 184 G-QLPASIGNLSSLLAF 199
+ A + NL L F
Sbjct: 210 DLRALAGLKNLDVLELF 226
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 123 MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI
Sbjct: 155 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 210
Query: 183 TG-QLPASIGNLSSLLAF 199
+ + A + NL L F
Sbjct: 211 SDLRALAGLKNLDVLELF 228
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 123 MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI
Sbjct: 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 190
Query: 183 TG-QLPASIGNLSSLLAF 199
+ + A + NL L F
Sbjct: 191 SDLRALAGLKNLDVLELF 208
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 123 MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI
Sbjct: 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 187
Query: 183 TG-QLPASIGNLSSLLAF 199
+ + A + NL L F
Sbjct: 188 SDLRALAGLKNLDVLELF 205
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155
L L ++L G L E+ P + R L+ L L +N+ NL LF+
Sbjct: 103 LGHLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG 161
Query: 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLA-FDVRENILWGRIDSLV 214
N + A GL L+RL + NH+ P + +L L+ + N+ + LV
Sbjct: 162 NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLV 221
Query: 215 QLRNLLLLDI 224
LR+L L +
Sbjct: 222 PLRSLQYLRL 231
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 123 MLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182
LE L L NN + T LSR + L L ++ N + +P A GL KL+ L++ NHI
Sbjct: 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 190
Query: 183 TG-QLPASIGNLSSLLAF 199
+ + A + NL L F
Sbjct: 191 SDLRALAGLKNLDVLELF 208
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156
LS L++ + G L E+P + LE L L+ N +P +++ + L EL +
Sbjct: 103 LSHLQHXTIDAAG-LXELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRAC 160
Query: 157 YLVGEIPAAIG---------GLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207
+ E+P + GL L+ L + I LPASI NL +L + +R + L
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS 219
Query: 208 GRIDSLVQLRNLLLLDI----AFNHFSGTIPPPIF 238
++ L L LD+ A ++ PPIF
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNY-----PPIF 249
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Query: 24 KTICANSNETDRLALLAIKS-----QLHDPLGVTSSWNNSMNLC-------QWTGV---- 67
+ + A+ +RL L+I++ +L +PL T + L +WTG+
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 68 ICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGL 127
Q + L +RN + L P + +L L ++L L PP G + L+ L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 128 VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGL 169
+L + S T+P ++ R + L +L + + +P+ I L
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 23/245 (9%)
Query: 89 TLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNL 148
+ P+ G LR + ++ G L +P +I L L L NN S + +L
Sbjct: 25 AMCPF-GCHCHLRVVQCSDLG-LKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHL 80
Query: 149 IELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
L + N + A L KL++L+I NH+ ++P ++ SSL+ + +N
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDN---- 133
Query: 209 RIDSLVQ-----LRNLLLLDIAFNHFSGT-IPPPIFNISSLEVISLSENRFTGSLPVDTG 262
RI + + LRN+ +++ N + P F+ L + +SE + TG +P D
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKD-- 190
Query: 263 VNLPN-LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321
LP L +L + N L S+L + NQ + S L L L++
Sbjct: 191 --LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
Query: 322 GINNL 326
N L
Sbjct: 249 DNNKL 253
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDF 336
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L F
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 337 INL-----LTNCSKLERLYFNR 353
L L NC E LYF R
Sbjct: 200 AFLHGNPWLCNC---EILYFRR 218
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDF 336
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L F
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 337 INL-----LTNCSKLERLYFNR 353
L L NC E LYF R
Sbjct: 200 AFLHGNPWLCNC---EILYFRR 218
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 85/221 (38%), Gaps = 32/221 (14%)
Query: 116 PQIGRQDMLEGL-------VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGG 168
PQ G Q + G+ L N S + C NL L++ +N L AA G
Sbjct: 19 PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Query: 169 LFKLERLFIFHN-HITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFN 227
L LE+L + N + PA+ L GR+ +L L L ++
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGL--------------GRLHTL-HLDRCGLQELGPG 123
Query: 228 HFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287
F G +++L+ + L +N +LP DT +L NL L +GN + +
Sbjct: 124 LFRG--------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
L+ + +N+ + F L L L + NNL
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 76 VTRLDLRNQSIGGTLSPYVGN-LSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSNNS 133
+ +LDL + + ++ P + L L ++L G L E+ P + R L+ L L +N+
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA 140
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
NL LF+ N + A GL L+RL + N + P + +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 194 SSLL 197
L+
Sbjct: 201 GRLM 204
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 85/221 (38%), Gaps = 32/221 (14%)
Query: 116 PQIGRQDMLEGL-------VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGG 168
PQ G Q + G+ L N S + C NL L++ +N L AA G
Sbjct: 18 PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 77
Query: 169 LFKLERLFIFHN-HITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFN 227
L LE+L + N + PA+ L GR+ +L L L ++
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGL--------------GRLHTL-HLDRCGLQELGPG 122
Query: 228 HFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287
F G +++L+ + L +N +LP DT +L NL L +GN + +
Sbjct: 123 LFRG--------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
L+ + +N+ + F L L L + NNL
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 76 VTRLDLRNQSIGGTLSPYVGN-LSFLRYINLANNGFLGEIPPQIGRQ-DMLEGLVLSNNS 133
+ +LDL + + ++ P + L L ++L G L E+ P + R L+ L L +N+
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA 139
Query: 134 FSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNL 193
NL LF+ N + A GL L+RL + N + P + +L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 194 SSLL 197
L+
Sbjct: 200 GRLM 203
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDF 336
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L F
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 337 INL-----LTNCSKLERLYFNR 353
L L NC E LYF R
Sbjct: 200 AFLHGNPWLCNC---EILYFRR 218
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDF 336
P L+ +LE + + NQ + + + L+NL L + N+L G ++ L F
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 337 INL-----LTNCSKLERLYFNR 353
L L NC E LYF R
Sbjct: 200 AFLHGNPWLCNC---EILYFRR 218
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 16/223 (7%)
Query: 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLV 159
LR + ++ G L ++P + L L L NN + + NL L + N +
Sbjct: 33 LRVVQCSDLG-LEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 160 GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRIDSLVQLRN 218
P A L KLERL++ N + +LP + +L V EN I R L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 219 LLLLDIAFNHF--SGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276
++++++ N SG + L I +++ T + G+ P+L +L +GN
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLP-PSLTELHLDGN 202
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319
T SL + L + S N S +VD L N L
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSIS---AVDNGSLANTPHL 242
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 294 MIEFSRNQFSGRVSVDFSRLKNLSWL---NMGINNLGTGTANELDFINLLTNCSKLERLY 350
+++ N+ + DF LKNL L N I+ + G F L+ KLERLY
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-----FAPLV----KLERLY 106
Query: 351 FNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393
++N+ + ELP + T++++ + N I+ ++RK V
Sbjct: 107 LSKNQLK-ELPEK---MPKTLQELRVHENEIT-----KVRKSV 140
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183
L L+L+ N + +NL EL + N L L L L+++HN +
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 184 GQLPASIGNLSSLLAFDVRENILW----GRIDSLVQLRNLLLLD 223
L++L D+ N L G D L QL+ L L D
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCS 344
L+N L ++E NQ F +L NL++L + N L + D LTN
Sbjct: 107 KLTNLKELVLVE---NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFD---KLTN-- 158
Query: 345 KLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLN--WL 398
L RL + N+ + LP V + + +KQ+++ N++ +L SL WL
Sbjct: 159 -LTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 16/223 (7%)
Query: 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLV 159
LR + ++ G L ++P + L L L NN + + NL L + N +
Sbjct: 33 LRVVQCSDLG-LEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 160 GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRIDSLVQLRN 218
P A L KLERL++ N + +LP + +L V EN I R L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 219 LLLLDIAFNHF--SGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276
++++++ N SG + L I +++ T + G+ P+L +L +GN
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLP-PSLTELHLDGN 202
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319
T SL + L + S N S +VD L N L
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSIS---AVDNGSLANTPHL 242
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 294 MIEFSRNQFSGRVSVDFSRLKNLSWL---NMGINNLGTGTANELDFINLLTNCSKLERLY 350
+++ N+ + DF LKNL L N I+ + G F L+ KLERLY
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-----FAPLV----KLERLY 106
Query: 351 FNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393
++N+ + ELP + T++++ + N I+ ++RK V
Sbjct: 107 LSKNQLK-ELPEK---MPKTLQELRVHENEIT-----KVRKSV 140
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSG 304
+ L N+ + SLP L LR L N N ++P + LE + + N+
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 305 RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364
F +L NL+ L + N L + D + +KL L N + LP V
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL------TKLTYLSLGYNELQS-LPKGV 152
Query: 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405
+ +++K++ + N++ KL L L +D NQL
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352
+ ++ N+ S S F RL L L + N L T A + LE L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------IFKELKNLETLWVT 93
Query: 353 RNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405
N+ + LP V + + ++ + RN++ P L L +L++ N+L
Sbjct: 94 DNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 344 SKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRN 403
+KL LY N N+ + LP + ++ + + N++ +LV+L L +DRN
Sbjct: 61 TKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 404 QLTGTIPPEI 413
QL ++PP +
Sbjct: 120 QLK-SLPPRV 128
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV--QLRNLLLLDIAFNHF 229
LE+L + N I + L+ LL ++ +N L G IDS + L L +LD+++NH
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI 359
Query: 230 SGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP 283
+ +L+ ++L N+ S+P L +L+++ + N + S P
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 244 EVISLSENRFTGSLPVDTGV--NLPNLRQLSPNGNNFTGSIPVSLSNA-SRLEMIEFSRN 300
+++ L +N+ T P GV +L NL++L G+N G++PV + ++ ++L +++ N
Sbjct: 43 QILYLHDNQITKLEP---GVFDSLINLKELY-LGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Query: 301 QFSGRVSVDFSRLKNLSWLNMGINNL 326
Q + S F RL +L L M N L
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKL 124
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 233 IPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+PP +F N+ L V+ L N + SLP N P L LS + NN + +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
L+ ++ S N+ + VD S + +L N+ N L T
Sbjct: 167 LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLST 200
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 233 IPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291
+PP +F N+ L V+ L N + SLP N P L LS + NN + +
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
L+ ++ S N+ + VD S + +L N+ N L T
Sbjct: 173 LQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLST 206
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDF 336
P L+ +LE + + N + + + L+NL L + N+L G ++ L F
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 337 INL-----LTNCSKLERLYFNR 353
L L NC E LYF R
Sbjct: 200 AFLHGNPWLCNC---EILYFRR 218
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
P L+ +LE + + N + + + L+NL L + N+L T
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 106 ANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAA 165
++G L IP G + ++ L LSNN + ++L RC NL L + +N + +
Sbjct: 38 GSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
L LE L + +N+++ + LSSL
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 83 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 140
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDF 336
P L+ +LE + + N + + + L+NL L + N+L G ++ L F
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 200
Query: 337 INL-----LTNCSKLERLYFNR 353
L L NC E LYF R
Sbjct: 201 AFLHGNPWLCNC---EILYFRR 219
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 106 ANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAA 165
++G L IP G + ++ L LSNN + ++L RC NL L + +N + +
Sbjct: 12 GSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 69
Query: 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSL 196
L LE L + +N+++ + LSSL
Sbjct: 70 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 100
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV---------DFSRLKN 315
LP+LR LS NN P S S L + R VS+ F LK
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 316 LSWLNMGINNLGTGTAN 332
L +LNM NN+ + +N
Sbjct: 331 LEYLNMDDNNIPSTKSN 347
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
P L+ +LE + + N + + + L+NL L + N+L T
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL-----GTGTANELDF 336
P L+ +LE + + N + + + L+NL L + N+L G ++ L F
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 337 INL-----LTNCSKLERLYFNR 353
L L NC E LYF R
Sbjct: 200 AFLHGNPWLCNC---EILYFRR 218
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN 324
LP+L +L N TG P + AS ++ ++ N+ + F L L LN+ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 325 NLGTGTANELDFINLLT 341
+ + +N LT
Sbjct: 113 QISCVMPGSFEHLNSLT 129
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281
LD++ N ++P + +L V+ +S NR T SLP+ L L++L GN
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328
P L+ +LE + + N + + + L+NL L + N+L T
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,813,825
Number of Sequences: 62578
Number of extensions: 467853
Number of successful extensions: 1168
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 178
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)