Query 047097
Match_columns 443
No_of_seqs 347 out of 4395
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-51 8.1E-56 438.0 33.2 402 31-442 27-453 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-43 3.5E-48 379.1 25.4 368 74-443 164-573 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.6E-38 1.2E-42 291.1 9.1 358 74-440 78-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.6E-36 1.2E-40 277.9 8.8 358 77-443 55-418 (873)
5 KOG0444 Cytoskeletal regulator 100.0 4.7E-35 1E-39 273.9 -4.6 346 74-436 7-357 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 6E-35 1.3E-39 259.9 -10.2 342 74-430 68-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.4E-32 3.1E-37 257.3 -2.6 333 95-443 4-341 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 7.5E-33 1.6E-37 246.6 -6.5 316 93-428 132-562 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.2E-28 2.7E-33 240.6 -3.0 220 194-428 241-487 (1081)
10 PLN03210 Resistant to P. syrin 99.9 4.2E-24 9E-29 230.2 25.7 288 122-429 611-905 (1153)
11 PLN03210 Resistant to P. syrin 99.9 5.6E-24 1.2E-28 229.2 26.1 346 74-442 532-894 (1153)
12 KOG0618 Serine/threonine phosp 99.9 3.3E-27 7.1E-32 230.7 -2.6 341 74-432 45-467 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 5.1E-23 1.1E-27 207.0 17.0 264 124-438 203-466 (788)
14 KOG4237 Extracellular matrix p 99.9 1.3E-25 2.8E-30 200.2 -2.7 252 74-326 67-358 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 3.4E-22 7.4E-27 201.1 18.0 267 98-415 201-467 (788)
16 PRK15370 E3 ubiquitin-protein 99.9 5.9E-21 1.3E-25 193.3 16.2 333 29-406 59-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 8.1E-20 1.7E-24 185.1 15.0 247 146-430 178-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 4.2E-21 9.1E-26 180.4 3.9 284 126-429 2-319 (319)
19 KOG4237 Extracellular matrix p 99.8 1.1E-21 2.3E-26 175.4 -3.2 274 125-430 70-359 (498)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.6E-20 5.7E-25 175.0 2.0 285 79-405 3-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.4E-19 5.3E-24 142.7 -4.8 160 74-238 33-193 (264)
22 KOG0617 Ras suppressor protein 99.7 5E-19 1.1E-23 140.9 -3.9 150 124-279 35-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.5E-14 3.3E-19 146.3 13.4 152 28-183 367-528 (623)
24 COG4886 Leucine-rich repeat (L 99.3 1.1E-11 2.4E-16 119.9 9.9 194 126-328 97-291 (394)
25 KOG1909 Ran GTPase-activating 99.3 1.9E-12 4.1E-17 115.0 4.0 192 165-358 25-255 (382)
26 COG4886 Leucine-rich repeat (L 99.3 7.3E-12 1.6E-16 121.2 8.4 180 239-434 114-294 (394)
27 KOG1909 Ran GTPase-activating 99.3 1.2E-12 2.5E-17 116.4 0.9 89 240-328 156-255 (382)
28 KOG3207 Beta-tubulin folding c 99.2 1.1E-12 2.3E-17 119.8 -0.3 211 119-330 118-342 (505)
29 KOG0532 Leucine-rich repeat (L 99.2 3.8E-13 8.3E-18 126.5 -3.9 192 76-276 77-270 (722)
30 KOG0532 Leucine-rich repeat (L 99.2 3.1E-13 6.7E-18 127.1 -4.7 194 121-324 74-270 (722)
31 KOG3207 Beta-tubulin folding c 99.2 3.1E-12 6.7E-17 116.8 1.1 167 190-356 142-313 (505)
32 KOG1259 Nischarin, modulator o 99.2 5.1E-12 1.1E-16 110.1 1.7 204 212-432 209-414 (490)
33 PF14580 LRR_9: Leucine-rich r 99.2 4.6E-11 1E-15 99.6 7.0 124 290-425 19-148 (175)
34 KOG1259 Nischarin, modulator o 99.1 9.3E-12 2E-16 108.5 1.4 129 193-327 283-412 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 9.8E-11 2.1E-15 97.6 4.5 107 96-207 17-126 (175)
36 KOG4658 Apoptotic ATPase [Sign 99.1 1.5E-10 3.2E-15 120.1 6.6 85 342-427 768-856 (889)
37 PLN03150 hypothetical protein; 99.1 5.6E-10 1.2E-14 113.3 9.7 110 292-408 420-530 (623)
38 KOG4658 Apoptotic ATPase [Sign 99.0 1.3E-10 2.8E-15 120.5 2.9 107 98-205 545-653 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.1E-14 73.9 2.8 61 369-429 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 5.7E-10 1.2E-14 108.3 -1.3 106 144-254 70-175 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 71.6 3.1 57 100-156 3-59 (61)
42 KOG1859 Leucine-rich repeat pr 98.7 2.8E-10 6E-15 110.4 -5.2 180 234-430 102-292 (1096)
43 KOG0531 Protein phosphatase 1, 98.7 1E-09 2.2E-14 106.5 -2.3 248 167-435 69-323 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.9E-09 4.1E-14 94.2 -4.7 179 218-403 186-373 (419)
45 KOG2982 Uncharacterized conser 98.5 1.4E-08 3.1E-13 88.8 -0.3 204 216-424 70-286 (418)
46 COG5238 RNA1 Ran GTPase-activa 98.5 8.4E-08 1.8E-12 83.0 3.9 90 165-254 25-133 (388)
47 KOG2982 Uncharacterized conser 98.5 2.8E-08 6.1E-13 87.0 0.9 86 144-229 69-158 (418)
48 KOG2120 SCF ubiquitin ligase, 98.5 2.6E-09 5.7E-14 93.3 -5.6 83 148-230 187-273 (419)
49 KOG1859 Leucine-rich repeat pr 98.5 9.1E-09 2E-13 100.2 -3.2 179 211-406 103-292 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.5 3.8E-08 8.3E-13 85.1 0.5 242 143-406 27-316 (388)
51 PF08263 LRRNT_2: Leucine rich 98.5 2.5E-07 5.5E-12 57.9 4.1 39 32-70 2-43 (43)
52 KOG4579 Leucine-rich repeat (L 98.3 6.1E-08 1.3E-12 75.2 -0.8 115 312-436 51-165 (177)
53 KOG4579 Leucine-rich repeat (L 98.2 1.5E-07 3.3E-12 73.0 -1.0 93 338-434 47-139 (177)
54 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.5E-11 53.8 2.6 37 393-430 1-37 (44)
55 PRK15386 type III secretion pr 98.0 1.8E-05 3.8E-10 74.5 7.8 138 213-379 48-187 (426)
56 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.7E-10 66.0 5.9 103 315-426 43-149 (233)
57 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 50.7 2.7 36 370-406 2-37 (44)
58 PRK15386 type III secretion pr 97.9 6.3E-05 1.4E-09 70.9 8.8 137 237-404 48-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.8 6.7E-06 1.5E-10 83.8 2.0 118 240-359 147-265 (699)
60 KOG4341 F-box protein containi 97.8 4.6E-07 9.9E-12 83.2 -5.8 82 99-180 139-226 (483)
61 KOG1644 U2-associated snRNP A' 97.8 4.6E-05 1E-09 63.5 6.3 84 142-225 60-148 (233)
62 KOG3665 ZYG-1-like serine/thre 97.7 2.3E-05 4.9E-10 80.0 3.4 152 241-400 122-282 (699)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00075 1.6E-08 53.8 7.9 84 93-179 7-90 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00046 1E-08 55.0 6.2 105 286-402 8-112 (129)
65 KOG4341 F-box protein containi 97.3 7.6E-06 1.7E-10 75.4 -4.9 279 147-429 139-438 (483)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00047 1E-08 60.1 2.2 68 90-159 35-104 (260)
67 KOG1947 Leucine rich repeat pr 96.8 0.00012 2.6E-09 72.9 -2.6 62 216-277 242-306 (482)
68 KOG2739 Leucine-rich acidic nu 96.8 0.001 2.2E-08 58.0 3.1 61 121-183 42-104 (260)
69 KOG2123 Uncharacterized conser 96.7 0.00021 4.6E-09 62.6 -1.5 87 343-435 18-106 (388)
70 KOG2123 Uncharacterized conser 96.6 0.00011 2.4E-09 64.4 -4.0 104 241-350 19-123 (388)
71 KOG1947 Leucine rich repeat pr 96.6 0.00043 9.3E-09 68.9 -0.7 32 388-419 357-389 (482)
72 PF00560 LRR_1: Leucine Rich R 96.6 0.00075 1.6E-08 35.1 0.5 20 419-439 2-21 (22)
73 KOG4308 LRR-containing protein 96.1 4.4E-05 9.4E-10 74.6 -10.4 182 146-328 87-304 (478)
74 PF00560 LRR_1: Leucine Rich R 95.8 0.0032 7E-08 32.7 0.4 19 395-414 2-20 (22)
75 KOG4308 LRR-containing protein 95.3 0.00031 6.7E-09 68.7 -8.1 35 196-230 89-128 (478)
76 KOG0473 Leucine-rich repeat pr 94.7 0.0016 3.5E-08 55.8 -4.3 98 339-440 37-134 (326)
77 PF13504 LRR_7: Leucine rich r 94.2 0.028 6.1E-07 27.0 1.2 13 418-430 2-14 (17)
78 KOG3864 Uncharacterized conser 93.4 0.012 2.7E-07 49.4 -1.4 35 368-402 150-185 (221)
79 PF13516 LRR_6: Leucine Rich r 92.5 0.019 4.2E-07 30.4 -1.0 20 417-436 2-21 (24)
80 PF13516 LRR_6: Leucine Rich r 90.8 0.11 2.4E-06 27.4 0.8 15 344-358 2-16 (24)
81 KOG0473 Leucine-rich repeat pr 90.5 0.004 8.6E-08 53.4 -7.6 82 74-158 42-123 (326)
82 smart00369 LRR_TYP Leucine-ric 89.4 0.4 8.7E-06 25.8 2.3 19 344-363 2-20 (26)
83 smart00370 LRR Leucine-rich re 89.4 0.4 8.7E-06 25.8 2.3 19 344-363 2-20 (26)
84 smart00369 LRR_TYP Leucine-ric 88.9 0.42 9.1E-06 25.7 2.2 21 241-262 2-22 (26)
85 smart00370 LRR Leucine-rich re 88.9 0.42 9.1E-06 25.7 2.2 21 241-262 2-22 (26)
86 KOG3864 Uncharacterized conser 87.8 0.2 4.3E-06 42.4 0.6 83 291-378 102-185 (221)
87 smart00364 LRR_BAC Leucine-ric 76.5 1.4 3.1E-05 23.7 0.9 17 394-411 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 76.2 2.1 4.6E-05 23.1 1.6 15 416-430 1-15 (26)
89 smart00368 LRR_RI Leucine rich 72.0 2.9 6.2E-05 22.9 1.5 14 345-358 3-16 (28)
90 KOG4242 Predicted myosin-I-bin 65.9 57 0.0012 31.9 9.5 62 345-406 414-481 (553)
91 KOG4242 Predicted myosin-I-bin 63.5 34 0.00074 33.3 7.6 39 316-357 415-453 (553)
92 KOG3763 mRNA export factor TAP 53.8 7.3 0.00016 38.5 1.5 67 341-407 215-284 (585)
93 KOG3763 mRNA export factor TAP 53.7 6.5 0.00014 38.8 1.2 61 240-303 217-283 (585)
94 smart00367 LRR_CC Leucine-rich 53.4 9.4 0.0002 20.3 1.3 16 416-431 1-17 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-51 Score=437.97 Aligned_cols=402 Identities=33% Similarity=0.529 Sum_probs=275.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcC
Q 047097 31 NETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
.++|+.|+++||+.+.+|.+.+.+|+...+||.|.|+.|+.. .+|+.|+++++.+.+..+..+..+++|++|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 568899999999999888888899998889999999999864 7899999999999999999999999999999999999
Q ss_pred cccCCcccC-CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCcc
Q 047097 111 LGEIPPQIG-RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPAS 189 (443)
Q Consensus 111 ~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 189 (443)
++.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 988887654 788888888888888766664 34667777777777776666767777777777777777776666777
Q ss_pred ccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCc
Q 047097 190 IGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268 (443)
Q Consensus 190 l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 268 (443)
+.++++|++|++++|.+.+.. ..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+. .+++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCC
Confidence 777777777777777665543 5566666666777766666666666666666666666666666655665544 56666
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCE
Q 047097 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLER 348 (443)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 348 (443)
++|++++|.+++.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|+.
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l~~L~~ 336 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSLPRLQV 336 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcCCCCCE
Confidence 666666666666666666666666666666666666666656666666666666666555444 33444445555
Q ss_pred EEccCCcccccCchhHHhh-----------------------ccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccc
Q 047097 349 LYFNRNRFEGELPHSVANL-----------------------SSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 349 L~Ls~n~l~~~~p~~~~~~-----------------------~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
|++++|.+++.+|..+... .+.|+.|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 5555555444444444433 14455555555555555555555555566666666666
Q ss_pred cccCchhccCCCCCCeeecccCcCccccCccccCCCC
Q 047097 406 TGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 442 (443)
++.+|..+..+++|+.|++++|++++.+|..++.+++
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 5555555656666666666666666665555444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-43 Score=379.08 Aligned_cols=368 Identities=33% Similarity=0.575 Sum_probs=263.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..+.++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 57888999999888888888888889999999888888888888888888888888888888888888888888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+++.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.. ..+.++++|+.|++++|.+.+.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 888887777888888888888888888877777777777777777777777766544 4555666666666666666666
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc------------------------cCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG------------------------SIPVSLSN 288 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~~~~l~~ 288 (443)
+|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|++++ .+|..+..
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 666666666666666666666555554443 44555555555554443 44444445
Q ss_pred CCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhh-----------------hhhhcCCCCCCEEEc
Q 047097 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF-----------------INLLTNCSKLERLYF 351 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~l~~~~~L~~L~L 351 (443)
+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..... .......++|+.|++
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 555666666666665555555556666666666666555443311000 000112345667777
Q ss_pred cCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 352 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++..|..+..+ ++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|+++|
T Consensus 483 s~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 483 SRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCCccCCccChhhhhh-hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 7777777777766665 778888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCccccCCCCC
Q 047097 432 SIPSSLGNLTLL 443 (443)
Q Consensus 432 ~~p~~l~~l~~L 443 (443)
.+|..+.++++|
T Consensus 562 ~~p~~l~~l~~L 573 (968)
T PLN00113 562 EIPKNLGNVESL 573 (968)
T ss_pred cCChhHhcCccc
Confidence 888887776543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-38 Score=291.12 Aligned_cols=358 Identities=22% Similarity=0.228 Sum_probs=316.9
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.||+++|.+...-+..|.++++|+.+.+.+|.++ .+|...+...+|+.|+|.+|.|+......+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45788999999999888888999999999999999998 78887777888999999999999777788899999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+.|.++..--..|..-.++++|++++|.++..-...|.++.+|..|.++.|.++..+ ..|.++++|+.|++..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 999998655567888889999999999999888888999999999999999999999 7888899999999999998744
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
--..|.++++|+.|.+..|++. .+.+..|..+.++++|++..|+++..-..++.++++|+.|++++|.|...-+..+.-
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 3566788999999999999998 888888889999999999999999777788899999999999999999888888999
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCc---hhh
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP---PEI 389 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~---~~l 389 (443)
+++|++|++++|.++...+ +.+..+..|++|+|+.|.++ .+-+..+...++|+.||+++|.+...+- ..|
T Consensus 316 tqkL~~LdLs~N~i~~l~~------~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDE------GSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred cccceeEeccccccccCCh------hHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 9999999999999998877 67888899999999999998 5666555556899999999999887544 347
Q ss_pred hcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 390 RKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 390 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
.++++|+.|++.||++...--.+|.+++.|+.|||.+|.|-..-|.+|..+
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 789999999999999994445589999999999999999988888887654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-36 Score=277.91 Aligned_cols=358 Identities=19% Similarity=0.193 Sum_probs=302.5
Q ss_pred EEEEcCCCCCceecCccccCC--CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNL--SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVD 154 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 154 (443)
+.+|.+++.+...-...+.++ +.-+.|++++|.++..-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 445555555543222222222 34677999999999888889999999999999999998 899988888889999999
Q ss_pred cccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCC
Q 047097 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 155 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
+|.++..-.+++..++.|+.|+++.|.++..--..+..-.++++|++++|.++... ..|..+.+|..|.++.|.++..-
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 99999877889999999999999999999555556777789999999999999888 89999999999999999999655
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+..|.++++|+.|++..|++. .+.-..|.++++|+.|.+..|++...-...|..+.++++|+++.|+++..-..++.++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred HHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 566777999999999999987 5545566789999999999999997777788899999999999999998888889999
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
+.|+.|++++|.+....+ ....-+++|++|+|++|+++ .+++.-+...+.|+.|++++|.++...-..|..++
T Consensus 293 t~L~~L~lS~NaI~rih~------d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHI------DSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred chhhhhccchhhhheeec------chhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 999999999999988877 45566899999999999999 55554444448899999999999966666788999
Q ss_pred CCCeeccccccccccCch---hccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 394 SLNWLTIDRNQLTGTIPP---EIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~---~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
+|++|||++|.+.+.+-+ .|..+++|+.|++.||++...-.++|..+..|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 999999999999876544 57889999999999999995555678777654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=4.7e-35 Score=273.87 Aligned_cols=346 Identities=24% Similarity=0.378 Sum_probs=256.4
Q ss_pred CcEEEEEcCCCCCc-eecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIG-GTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 152 (443)
+-|+.+|+++|.++ +..|..+..++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 45788899999888 458888888999999998888876 78888999999999999999887 6677788888889888
Q ss_pred cccccce-eccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCC
Q 047097 153 VDTNYLV-GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFS 230 (443)
Q Consensus 153 l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~ 230 (443)
+..|++. .-+|..+..+..|.+|+++.|++. +.|..+...+++-.|++++|.+..++ ..+.++..|-.||+++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 8888775 346778888889999999999888 77888888888889999999888888 67778888888999988887
Q ss_pred CCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc-ccCCccccCCCCCCEEecccCcccccCCcc
Q 047097 231 GTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT-GSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 231 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+|+.+..+..|++|++++|.+. .+.......+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|..
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 77888888888888888888765 322222225667777777776544 356777778888888888888776 66777
Q ss_pred ccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcc-cCchh
Q 047097 310 FSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISG-TIPPE 388 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 388 (443)
+.++++|+.|++++|.++..... .+...+|++|++|.|+++ .+|..++++ ++|+.|+..+|+++= -+|..
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~-------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMT-------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred HhhhhhhheeccCcCceeeeecc-------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCccc
Confidence 77888888888888887654432 233356777777777777 677777775 666666666666542 25555
Q ss_pred hhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 389 IRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 389 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
++.+..|+.+...+|.+. .+|+.++.|++|+.|.|+.|++- .+|+.
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea 357 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA 357 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence 555555555555555555 55555555555555555555554 44443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=6e-35 Score=259.89 Aligned_cols=342 Identities=26% Similarity=0.380 Sum_probs=254.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.+++++|.+. ..|++++.+..++.++.+.|+++ .+|++++.+.+|+.+++++|.+. ..|+.++.+-.|+.++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 34677788888775 55667788888888888888876 77888888888888888888877 67777777888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
.+|+++ ..|+.+..+.++..+++.+|++. ..|...-+++.|++++...|.+...++.++.+.+|..|++..|.+. .+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cC
Confidence 888877 67777777777888888888777 3444444477788888888877777777788888888888888776 45
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| .|..+..|.+++++.|.+. .+|....++++++..||++.|++. ..|..+..+.+|+.||+++|.++ ..|..++++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 5 6777777888888888777 777777777888888888888887 67777777778888888888887 456667777
Q ss_pred CCCCEEECCCCcCCCcC---------------------------------------------------------------
Q 047097 314 KNLSWLNMGINNLGTGT--------------------------------------------------------------- 330 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~--------------------------------------------------------------- 330 (443)
+|+.|-+.+|.+....
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~ 376 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL 376 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence 7888877777542100
Q ss_pred --CCch-------------------------------------------hhhhhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 331 --ANEL-------------------------------------------DFINLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 331 --~~~~-------------------------------------------~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
.+.+ ..+..+..+++|..|++++|.+. .+|..++
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~ 455 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG 455 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhh
Confidence 0000 01234566788888888888887 7888888
Q ss_pred hhccCCCEEeCcCCcCcccCch------------------------hhhcccCCCeeccccccccccCchhccCCCCCCe
Q 047097 366 NLSSTIKQIAMGRNRISGTIPP------------------------EIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQL 421 (443)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~~~------------------------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 421 (443)
.+ ..|+.|+++.|.|. .+|. .+.++.+|..||+.+|.+. .+|..++++++|++
T Consensus 456 ~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 456 SL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred hh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 86 55888888887665 3332 3666777788888888777 77888888888888
Q ss_pred eecccCcCc
Q 047097 422 LNLGGNFLQ 430 (443)
Q Consensus 422 L~l~~n~l~ 430 (443)
|+++||+|.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 888888877
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-32 Score=257.34 Aligned_cols=333 Identities=26% Similarity=0.419 Sum_probs=292.7
Q ss_pred cCCCCCCEEECCCCcCcc-cCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCc
Q 047097 95 GNLSFLRYINLANNGFLG-EIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 173 (443)
+-++.++-.|+++|.++| ..|..+..++.++.|.|....+. .+|..++.+.+|++|.++.|++. .+-..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 456788999999999995 68999999999999999999988 89999999999999999999988 5556788999999
Q ss_pred EEeccccccC-CCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh-hhhCCCCCcEEEcccC
Q 047097 174 RLFIFHNHIT-GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP-PIFNISSLEVISLSEN 251 (443)
Q Consensus 174 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n 251 (443)
.+.+..|++. ..+|..+..+..|+.||+++|++...+..+...+++-.|++++|+|. .+|. -+.+++-|-.||+++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 9999999874 46799999999999999999999999988888999999999999998 5554 4567899999999999
Q ss_pred CCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccc-ccCCccccCCCCCCEEECCCCcCCCcC
Q 047097 252 RFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS-GRVSVDFSRLKNLSWLNMGINNLGTGT 330 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
++. .+|..+. .+.+|++|++++|.+.-.-...+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|++...
T Consensus 161 rLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v- 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV- 237 (1255)
T ss_pred hhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-
Confidence 998 8888887 8999999999999886433445567788999999987554 46888899999999999999998643
Q ss_pred CCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc-ccC
Q 047097 331 ANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT-GTI 409 (443)
Q Consensus 331 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~ 409 (443)
| ..+..+++|+.|+||+|+++ .+......+ .+|++|++|.|+++ .+|+.++.+++|+.|.+.+|+++ +-+
T Consensus 238 P------ecly~l~~LrrLNLS~N~it-eL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 238 P------ECLYKLRNLRRLNLSGNKIT-ELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred h------HHHhhhhhhheeccCcCcee-eeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 2 67888999999999999999 666666665 78999999999999 89999999999999999999887 468
Q ss_pred chhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 410 PPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 410 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
|..++.+.+|+.+...+|.+. -+|+.++.|..|
T Consensus 309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred ccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 999999999999999999887 899999887643
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=7.5e-33 Score=246.58 Aligned_cols=316 Identities=28% Similarity=0.413 Sum_probs=214.2
Q ss_pred cccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCC
Q 047097 93 YVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKL 172 (443)
Q Consensus 93 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 172 (443)
+++.+-.+..++..+|+++ ..|+.+..+.+|..+++.+|.++ ..|...-+++.|++|+...|-++ .+|+.++.+.+|
T Consensus 132 ~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L 208 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESL 208 (565)
T ss_pred hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhh
Confidence 3344444444444444443 34444444444555555555554 23333333666777777776665 778888888888
Q ss_pred cEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccC
Q 047097 173 ERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN 251 (443)
Q Consensus 173 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 251 (443)
..|++..|++. ..| .|..|..|+++.+..|.+...+ +...+++++..||+.+|.+. ..|..+.-+.+|+.||+++|
T Consensus 209 ~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 209 ELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC
Confidence 88888888887 556 7888888888888888888777 56668899999999999998 78898999999999999999
Q ss_pred CCCccCchhhhcCCCCccEEeCCCCcCcc---------------------------------------------------
Q 047097 252 RFTGSLPVDTGVNLPNLRQLSPNGNNFTG--------------------------------------------------- 280 (443)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------------------------------------- 280 (443)
.++ .+|...+ ++ +|+.|.+.+|.+..
T Consensus 286 ~is-~Lp~sLg-nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i 362 (565)
T KOG0472|consen 286 DIS-SLPYSLG-NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII 362 (565)
T ss_pred ccc-cCCcccc-cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence 998 7888777 66 88999888885520
Q ss_pred -------------cCCccccC---CCCCCEEecccCccc-----------------------ccCCccccCCCCCCEEEC
Q 047097 281 -------------SIPVSLSN---ASRLEMIEFSRNQFS-----------------------GRVSVDFSRLKNLSWLNM 321 (443)
Q Consensus 281 -------------~~~~~l~~---~~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l 321 (443)
.+|+.... -.-.+.++++.|++. +.+|..+..+++|..|++
T Consensus 363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L 442 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDL 442 (565)
T ss_pred hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeec
Confidence 01110000 011456666666542 234445677888889999
Q ss_pred CCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh------------------------HHhhccCCCEEeCc
Q 047097 322 GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS------------------------VANLSSTIKQIAMG 377 (443)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~------------------------~~~~~~~L~~L~l~ 377 (443)
++|.+.. .| ..++.+..|+.|+++.|.+. .+|.. +.. ..+|..||+.
T Consensus 443 ~NN~Ln~-LP------~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n-m~nL~tLDL~ 513 (565)
T KOG0472|consen 443 SNNLLND-LP------EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN-MRNLTTLDLQ 513 (565)
T ss_pred ccchhhh-cc------hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh-hhhcceeccC
Confidence 8776643 23 45666677888888888776 44432 223 3789999999
Q ss_pred CCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCc
Q 047097 378 RNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 378 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
+|.+. .+|..++++++|++|++.||.|. .-+..+-.-+....|..-+++
T Consensus 514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred CCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhccc
Confidence 99999 89999999999999999999998 333333323333344443333
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-28 Score=240.61 Aligned_cols=220 Identities=27% Similarity=0.386 Sum_probs=174.8
Q ss_pred CCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeC
Q 047097 194 SSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSP 273 (443)
Q Consensus 194 ~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 273 (443)
.+|++++++.|.+...+..+..+.+|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|.... ...+|+.|++
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeee
Confidence 4677888888888888877788888999999888885 66666777777777777777776 5665543 5677777777
Q ss_pred CCCcCcccCCccc--------------------------cCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCC
Q 047097 274 NGNNFTGSIPVSL--------------------------SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 274 ~~n~l~~~~~~~l--------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
..|++. .+|..+ ...+.|+.|++.+|.+++.....+.++.+|+.|+|++|.+.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 777665 222211 12346889999999999988888999999999999999997
Q ss_pred CcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccc
Q 047097 328 TGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 407 (443)
.... ..+.+++.|+.|+||+|+++ .+|..+..+ ..|++|...+|++. ..| .+..++.|+.+|++.|+++.
T Consensus 397 ~fpa------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~-~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 397 SFPA------SKLRKLEELEELNLSGNKLT-TLPDTVANL-GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cCCH------HHHhchHHhHHHhcccchhh-hhhHHHHhh-hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 7665 67889999999999999999 899888876 78999999999998 778 78899999999999999985
Q ss_pred c-CchhccCCCCCCeeecccCc
Q 047097 408 T-IPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 408 ~-~p~~~~~l~~L~~L~l~~n~ 428 (443)
. +|+.. ..++|++||++||.
T Consensus 467 ~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhC-CCcccceeeccCCc
Confidence 4 34433 34899999999997
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=4.2e-24 Score=230.17 Aligned_cols=288 Identities=18% Similarity=0.181 Sum_probs=169.3
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEc
Q 047097 122 DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 122 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
.+|++|++++|.+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44444444444444 334444444555555554443222333 2444445555555444433344444455555555555
Q ss_pred cCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc--
Q 047097 202 RENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT-- 279 (443)
Q Consensus 202 ~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-- 279 (443)
++|......+.-.++++|+.|++++|...+.+|.. .++|++|++++|.+. .+|... .+++|++|.+.++...
T Consensus 689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhc
Confidence 44422211111113444555555544333233321 234455555555544 444332 3445555555442211
Q ss_pred -----ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC
Q 047097 280 -----GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354 (443)
Q Consensus 280 -----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n 354 (443)
...+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+..| ... .+++|+.|++++|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP------~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP------TGI-NLESLESLDLSGC 835 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC------CCC-CccccCEEECCCC
Confidence 0011112234678889999988777888889999999999999875444444 222 6788999999998
Q ss_pred cccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcC
Q 047097 355 RFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.-
T Consensus 836 ~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 836 SRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred Ccccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 665566542 367999999999998 7899999999999999999765557888888899999999998853
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=5.6e-24 Score=229.20 Aligned_cols=346 Identities=17% Similarity=0.177 Sum_probs=268.3
Q ss_pred CcEEEEEcCCCCCce--ecCccccCCCCCCEEECCCCcC------cccCCcccCCCC-CCCEEEccCCcCCCCCCccccC
Q 047097 74 QRVTRLDLRNQSIGG--TLSPYVGNLSFLRYINLANNGF------LGEIPPQIGRQD-MLEGLVLSNNSFSGTIPTNLSR 144 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~ 144 (443)
.+|+.+.+....+.. ..+.+|.++++|+.|.+..+.+ ...+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456666555443332 2445688999999999976643 234677776664 5999999999887 778877 5
Q ss_pred CCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcC-ccccccccCCCcCcEEe
Q 047097 145 CSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL-WGRIDSLVQLRNLLLLD 223 (443)
Q Consensus 145 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~l~~l~~L~~L~ 223 (443)
..+|++|++.++.+. .++..+..+++|+.|+++++.....+| .++.+++|+.|++.+|.. ...+..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999987 678888999999999999876555666 488899999999999854 44447788999999999
Q ss_pred cccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccc
Q 047097 224 IAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
+++|.....+|..+ .+++|+.|++++|...+.+|. ..++|+.|++++|.+. .+|..+ .+++|++|++.++...
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 99987666777655 789999999999976656664 3578999999999987 677655 5788999988775321
Q ss_pred -------ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeC
Q 047097 304 -------GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAM 376 (443)
Q Consensus 304 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l 376 (443)
...+......++|+.|++++|......| ..++++++|+.|++++|...+.+|..+ . .++|+.|++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHLEIENCINLETLPTGI-N-LESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCEEEC
Confidence 1112223345789999999997766665 678899999999999987655888765 3 488999999
Q ss_pred cCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCC
Q 047097 377 GRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 377 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 442 (443)
++|.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+.++++
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 998765566643 368999999999998 89999999999999999997666677766555443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-27 Score=230.73 Aligned_cols=341 Identities=27% Similarity=0.335 Sum_probs=225.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
-++++||+++|.+. ..|..+..+.+|+.|+++.|.|. .+|.+..++.+|++++|.+|.+. ..|..+..+.+|++|++
T Consensus 45 v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 34889999999884 67777889999999999999997 77888999999999999999887 89999999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccc-------------------cccCCCCCccccCCCCCCEEEccCCcCcccccccc
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFH-------------------NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV 214 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~-------------------n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~ 214 (443)
+.|.+. .+|..+..++.++.+..++ |.+.+.++..+..++. .+++++|.+... .+.
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~--dls 196 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL--DLS 196 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh--hhh
Confidence 999886 6666555444444444443 3344444444444444 467766655411 111
Q ss_pred CC--------------------CcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCC
Q 047097 215 QL--------------------RNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274 (443)
Q Consensus 215 ~l--------------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 274 (443)
.+ ++++.|+..+|.++... .-....+|++++++.|.++ .+|.++. .+.+|+.+...
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n 272 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNAN 272 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHH-hcccceEeccc
Confidence 12 22333333333332110 0112344555666666555 5554333 55566666666
Q ss_pred CCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc---------------------
Q 047097 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE--------------------- 333 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------- 333 (443)
+|+++ .+|..+....+|+.+.+..|.+. -+|....+++.|+.|++..|++.......
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 55554 34443434444444444444443 22222333444444444444332211100
Q ss_pred ----------------------hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 334 ----------------------LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 334 ----------------------~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
.+....+.++++|+.|+|++|++. .+|.....-.+.|+.|++|+|.++ .+|+++..
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence 011256778899999999999998 888865554588999999999999 88999999
Q ss_pred ccCCCeeccccccccccCchhccCCCCCCeeecccCcCccc
Q 047097 392 LVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 392 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
++.|+.|...+|++. ..| .+..++.|+.+|++.|.++..
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 999999999999998 888 688899999999999999744
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=5.1e-23 Score=207.00 Aligned_cols=264 Identities=28% Similarity=0.313 Sum_probs=164.1
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC
Q 047097 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 456677777666 5666554 36677777777666 3443 2456777777777666 34432 34666777777
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 283 (443)
|.+...+..+ .+|+.|++++|.++ .+|. ..++|+.|++++|.+. .+|. ...+|+.|++++|+++ .+|
T Consensus 272 N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 272 NPLTHLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred Cchhhhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCC----CcccccccccccCccc-ccc
Confidence 7665544322 35667777777766 3443 2356777777777776 4553 2345667777777776 344
Q ss_pred ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 284 VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.. ..+|++|++++|++++ +|.. .++|+.|++++|.+..... ...+|+.|++++|+++ .+|..
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt-~LP~l 400 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLT-SLPVL 400 (788)
T ss_pred cc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc----------cccccceEEecCCccc-CCCCc
Confidence 31 2467777777777764 3321 2456677777777654221 1245777777777777 45532
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
.+.|+.|++++|.++ .+|... .+|+.|++++|+++ .+|+.+..+++|+.|++++|++++..|..+.
T Consensus 401 ----~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 ----PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ----ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 245777777777776 455432 35667777777777 6777777777777777777777777666553
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-25 Score=200.24 Aligned_cols=252 Identities=18% Similarity=0.180 Sum_probs=177.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccC-CcCCCCCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSN-NSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 152 (443)
...+.|+|..|.++...+.+|..+++||.|||++|.|+.+-|++|.+++.|..|-+.+ |+|+......|.++.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999998887776 889966666789999999999
Q ss_pred cccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-------------ccccCCCcC
Q 047097 153 VDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-------------DSLVQLRNL 219 (443)
Q Consensus 153 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-------------~~l~~l~~L 219 (443)
+.-|.+.-...+.|..++++..|.+.+|.+...--..+..+..++.+.+..|.+.... ..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999998777789999999999999999888443347788888888877766421110 111111111
Q ss_pred cEEecccCcC-------------------------CCCCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeC
Q 047097 220 LLLDIAFNHF-------------------------SGTIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSP 273 (443)
Q Consensus 220 ~~L~l~~n~~-------------------------~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 273 (443)
.-..+.+..+ .+..| ..|..+++|++|++++|.++ .+....|.+..++++|.+
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence 1111111111 11122 23555666666666666666 555555556666666666
Q ss_pred CCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 274 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
..|++...-...|.++..|+.|++.+|+|+...|..|..+..|.+|++-.|.+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666544444556666666666666666666666666666666666666654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=3.4e-22 Score=201.09 Aligned_cols=267 Identities=25% Similarity=0.283 Sum_probs=211.1
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEec
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 177 (443)
..-..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 44678999999998 6787665 47999999999998 56653 588999999999998 45643 468899999
Q ss_pred cccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
++|.+. .+|.. ..+|+.|++++|.+...+.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.+. .+
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 999887 45543 35788999999988876642 3679999999999984 4542 346888999999997 67
Q ss_pred chhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhh
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI 337 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 337 (443)
|. -..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. .++|+.|++++|.+++...
T Consensus 338 P~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~------ 399 (788)
T PRK15387 338 PT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV------ 399 (788)
T ss_pred cc----cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC------
Confidence 74 2368999999999998 45653 3578899999999984 5542 3579999999999976432
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccC
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE 415 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 415 (443)
..++|+.|++++|.++ .+|.. +..|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+..
T Consensus 400 ----l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 400 ----LPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ----cccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 1368999999999998 57753 246889999999998 78999999999999999999999888887633
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=5.9e-21 Score=193.29 Aligned_cols=333 Identities=18% Similarity=0.284 Sum_probs=173.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCC---CCCCCCCCCCCCceee----------------eeeCCCCCcEEEEEcCCCCCcee
Q 047097 29 NSNETDRLALLAIKSQLHDPLG---VTSSWNNSMNLCQWTG----------------VICGRRHQRVTRLDLRNQSIGGT 89 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~---~~~~w~~~~~~c~~~~----------------~~c~~~~~~v~~L~l~~~~l~~~ 89 (443)
....++.+.+.+....+.-|.. +...|+.+.++|.-.. |.|.. +.|+.+.+-+......
T Consensus 59 ~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~~~ 136 (754)
T PRK15370 59 TASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQASS 136 (754)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccccccc
Confidence 4567888888888888876642 2345998889996543 34433 4555555544221111
Q ss_pred c--CccccCCCCCCEEECC----CCcCcccC---Cccc-----CCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 90 L--SPYVGNLSFLRYINLA----NNGFLGEI---PPQI-----GRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 90 ~--~~~~~~l~~L~~L~L~----~n~~~~~~---~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
. +..... +-... ++.-.+.. ..++ .-..+...|+++++.++ .+|..+. ++|+.|++++
T Consensus 137 ~~~~~~~~~-----~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 137 ASGSKDAVN-----YELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDN 208 (754)
T ss_pred CCCCCChhh-----HHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecC
Confidence 0 000000 00000 00000000 0000 01123456666666665 4554442 4566666666
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP 235 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|+++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.+...+..+. .+|+.|++++|.++ .+|.
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccc
Confidence 6666 4454433 36666666666665 3454332 356666666666554443332 35666666666665 3454
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++ .+|..+ .++|+.|++++|.+++ +|..+. ++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~s 347 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PE 347 (754)
T ss_pred ccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--Cc
Confidence 332 35666666666665 455332 235666666666666 344333 2456666666666653 343332 46
Q ss_pred CCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhh----hc
Q 047097 316 LSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI----RK 391 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~ 391 (443)
|+.|++++|.++.. + ..+ .++|++|++++|.++ .+|..+. ..|+.|++++|+++ .+|..+ ..
T Consensus 348 L~~L~Ls~N~L~~L-P------~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~ 413 (754)
T PRK15370 348 LQVLDVSKNQITVL-P------ETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGE 413 (754)
T ss_pred ccEEECCCCCCCcC-C------hhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence 66666666666532 2 111 245666666666666 5555443 23666666666665 444433 23
Q ss_pred ccCCCeecccccccc
Q 047097 392 LVSLNWLTIDRNQLT 406 (443)
Q Consensus 392 l~~L~~L~l~~n~~~ 406 (443)
++++..|++.+|.++
T Consensus 414 ~~~l~~L~L~~Npls 428 (754)
T PRK15370 414 GPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCccEEEeeCCCcc
Confidence 355666666666665
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=8.1e-20 Score=185.12 Aligned_cols=247 Identities=23% Similarity=0.361 Sum_probs=198.8
Q ss_pred CCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecc
Q 047097 146 SNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIA 225 (443)
Q Consensus 146 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~ 225 (443)
.+...|+++++.++ .+|..+. ++++.|++++|.++ .+|..+. .+|+.|++++|.+...+..+. ++|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 45788999999888 5676554 58999999999999 5676654 589999999999987765443 479999999
Q ss_pred cCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccccc
Q 047097 226 FNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 226 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
+|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence 99998 6777664 58999999999998 7886543 58999999999998 4665443 579999999999985
Q ss_pred CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
+|..+ .++|+.|++++|.++.... .+ +++|+.|++++|+++ .+|..+ ++.|+.|++++|+++ .+
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSLPA-------SL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NL 382 (754)
T ss_pred CCccc--cccceeccccCCccccCCh-------hh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CC
Confidence 44433 3689999999999876432 22 378999999999998 678655 368999999999999 67
Q ss_pred chhhhcccCCCeeccccccccccCchhc----cCCCCCCeeecccCcCc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEI----GELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~----~~l~~L~~L~l~~n~l~ 430 (443)
|..+. .+|+.|++++|++. .+|+.+ ..++++..|++.+|+++
T Consensus 383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77765 47999999999998 666654 44588999999999986
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=4.2e-21 Score=180.42 Aligned_cols=284 Identities=18% Similarity=0.206 Sum_probs=177.0
Q ss_pred EEEccCCcCC-CCCCccccCCCCCcEEecccccceec----cCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEE
Q 047097 126 GLVLSNNSFS-GTIPTNLSRCSNLIELFVDTNYLVGE----IPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200 (443)
Q Consensus 126 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 200 (443)
.|+|.++.++ +.....+..+.+|+.++++++.++.. ++..+...+++++++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 4566666665 23344455666677777777776422 33344555566666666655441 01100
Q ss_pred ccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCC---CcEEEcccCCCCcc----CchhhhcCC-CCccEEe
Q 047097 201 VRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISS---LEVISLSENRFTGS----LPVDTGVNL-PNLRQLS 272 (443)
Q Consensus 201 l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~---L~~L~l~~n~~~~~----~~~~~~~~~-~~L~~L~ 272 (443)
......+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.+. +...+. .+ ++|++|+
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~ 143 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLV 143 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEE
Confidence 000123444566666666666665444444444433 77777777776521 111222 34 6778888
Q ss_pred CCCCcCcc----cCCccccCCCCCCEEecccCccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCC
Q 047097 273 PNGNNFTG----SIPVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCS 344 (443)
Q Consensus 273 l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 344 (443)
+++|.+++ .++..+..++.|++|++++|.+++. ++..+..+++|+.|++++|.+.+... ..+...+..++
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~~~~~~ 221 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA--SALAETLASLK 221 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH--HHHHHHhcccC
Confidence 88887763 2334456667888888888887742 22334556788888988888764322 12335567788
Q ss_pred CCCEEEccCCcccccCchhHHhhc----cCCCEEeCcCCcCcc----cCchhhhcccCCCeecccccccccc----Cchh
Q 047097 345 KLERLYFNRNRFEGELPHSVANLS----STIKQIAMGRNRISG----TIPPEIRKLVSLNWLTIDRNQLTGT----IPPE 412 (443)
Q Consensus 345 ~L~~L~Ls~n~l~~~~p~~~~~~~----~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~ 412 (443)
+|++|++++|++++.....+.... +.|+.|++++|.+++ .+...+..+++|+++++++|.++.. +...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 999999999988864444444332 589999999998873 2445666778999999999999854 3444
Q ss_pred ccCC-CCCCeeecccCcC
Q 047097 413 IGEL-KNLQLLNLGGNFL 429 (443)
Q Consensus 413 ~~~l-~~L~~L~l~~n~l 429 (443)
+... +.|+.+++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 6899999998875
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-21 Score=175.35 Aligned_cols=274 Identities=21% Similarity=0.230 Sum_probs=132.1
Q ss_pred CEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccc-cccCCCCCccccCCCCCCEEEccC
Q 047097 125 EGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH-NHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 125 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
..++|..|.|+...|..|+.+++|+.|+|+.|.|+.+.|.+|.++.++..|-+.+ |+|+..-...|+++..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4455555555544444555555555555555555555555555555554444433 555533333444444444444444
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc----
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT---- 279 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~---- 279 (443)
|.+.-.. ...+..++++..|.+.+|.+. .++...+..+..++.+.+..|.+-
T Consensus 150 n~i~Cir-----------------------~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 150 NHINCIR-----------------------QDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hhhcchh-----------------------HHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc
Confidence 4444333 344444444444444444444 343333334444444444443311
Q ss_pred --------ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEE--EC-CCCcCCCcCCCchhhhhhhcCCCCCCE
Q 047097 280 --------GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL--NM-GINNLGTGTANELDFINLLTNCSKLER 348 (443)
Q Consensus 280 --------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--~l-~~n~l~~~~~~~~~~~~~l~~~~~L~~ 348 (443)
...|..++...-.....+.+.++....+..|.. .++.+ .+ +.+......|. ..+..+++|++
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~-----~cf~~L~~L~~ 278 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPA-----KCFKKLPNLRK 278 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChH-----HHHhhcccceE
Confidence 011222222222223333333332222221111 11111 11 11112222221 34666666777
Q ss_pred EEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCc
Q 047097 349 LYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 349 L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
|++++|++++.-+.+|... ..++.|.+..|++...-...|.++..|+.|+|++|+|+...|.+|..+..|.+|.+-+|+
T Consensus 279 lnlsnN~i~~i~~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred eccCCCccchhhhhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 7777776664444444443 566666777666654444456666667777777777776666667767777777766666
Q ss_pred Cc
Q 047097 429 LQ 430 (443)
Q Consensus 429 l~ 430 (443)
+.
T Consensus 358 ~~ 359 (498)
T KOG4237|consen 358 FN 359 (498)
T ss_pred cc
Confidence 53
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.6e-20 Score=175.00 Aligned_cols=285 Identities=19% Similarity=0.237 Sum_probs=124.3
Q ss_pred EEcCCCCCce-ecCccccCCCCCCEEECCCCcCcc----cCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 79 LDLRNQSIGG-TLSPYVGNLSFLRYINLANNGFLG----EIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 79 L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
|+|..+.+++ .....+..+.+|++|+++++.++. .++..+...+.+++++++++.+.+ .+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH-----------
Confidence 4555555552 233334455556666666666643 133344455556666666554431 01000
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCC---CCEEEccCCcCcccc-----ccccCC-CcCcEEec
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS---LLAFDVRENILWGRI-----DSLVQL-RNLLLLDI 224 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~~~~~~-----~~l~~l-~~L~~L~l 224 (443)
..++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.... ..+..+ ++|+.|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 122234444555555555555554333333332222 455555444443211 122333 44555555
Q ss_pred ccCcCCCC----CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccC
Q 047097 225 AFNHFSGT----IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300 (443)
Q Consensus 225 ~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 300 (443)
++|.+++. ++..+..+++|++|++++|.+.+.... .++..+..+++|++|++++|
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR---------------------ALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH---------------------HHHHHHHhCCCCCEEeccCC
Confidence 55554421 122233344455555555444421111 11112223334444444444
Q ss_pred ccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhh-cCCCCCCEEEccCCcccccCc----hhHHhhccCC
Q 047097 301 QFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL-TNCSKLERLYFNRNRFEGELP----HSVANLSSTI 371 (443)
Q Consensus 301 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p----~~~~~~~~~L 371 (443)
.+++. +...+..+++|++|++++|.+++.... .+...+ ...+.|+.|++++|.+++... ..+... ++|
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L 280 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESL 280 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH--HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCc
Confidence 44321 112234445555555555554431110 000111 123556666666666652211 122222 456
Q ss_pred CEEeCcCCcCccc----Cchhhhcc-cCCCeeccccccc
Q 047097 372 KQIAMGRNRISGT----IPPEIRKL-VSLNWLTIDRNQL 405 (443)
Q Consensus 372 ~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~ 405 (443)
+.+++++|.++.. +...+... +.|+.+++.+|.+
T Consensus 281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 6666666666643 33333333 5677777776653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.4e-19 Score=142.66 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=126.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|.+++|.++ .+|+.++.+.+|+.|++++|++. .+|..++.+++|+.|+++.|++. ..|..|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 56888899999886 56667899999999999999987 78888999999999999999887 78999999999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
.+|++.. .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.++.|.+...+..++.+..|++|.+.+|.++ .
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-e
Confidence 9888763 57778888888888888888887 7788888888887777777776665555555566666666666555 4
Q ss_pred CChhhh
Q 047097 233 IPPPIF 238 (443)
Q Consensus 233 ~~~~l~ 238 (443)
+|+.++
T Consensus 188 lppel~ 193 (264)
T KOG0617|consen 188 LPPELA 193 (264)
T ss_pred cChhhh
Confidence 444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5e-19 Score=140.87 Aligned_cols=150 Identities=31% Similarity=0.496 Sum_probs=78.2
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC
Q 047097 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
.+.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+.+
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 333444444444 34444444444444444444444 44444455555555555555444 4555555555555555555
Q ss_pred CcCcccc--ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc
Q 047097 204 NILWGRI--DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279 (443)
Q Consensus 204 n~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 279 (443)
|.+.... ..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+. ++|..++ .+..|++|++.+|.++
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhcccceee
Confidence 5443322 34444555566666666655 55566666666666666666655 5565555 5555666666666555
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=146.27 Aligned_cols=152 Identities=34% Similarity=0.528 Sum_probs=126.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCC-----ceeeeeeCCCC----CcEEEEEcCCCCCceecCccccCCC
Q 047097 28 ANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLC-----QWTGVICGRRH----QRVTRLDLRNQSIGGTLSPYVGNLS 98 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~c~~~~----~~v~~L~l~~~~l~~~~~~~~~~l~ 98 (443)
..+.++|..||+++|..+.++. ..+|.. ++| .|.|+.|.... ..++.|+|+++.+.+.+|..+..++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 3456788999999999887653 247964 344 69999995321 3589999999999999999999999
Q ss_pred CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCC-CCCcEEec
Q 047097 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGL-FKLERLFI 177 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l 177 (443)
+|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++++|++|++++|.+++.+|..+... .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999887653 46677777
Q ss_pred cccccC
Q 047097 178 FHNHIT 183 (443)
Q Consensus 178 ~~n~l~ 183 (443)
.+|...
T Consensus 523 ~~N~~l 528 (623)
T PLN03150 523 TDNAGL 528 (623)
T ss_pred cCCccc
Confidence 777543
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=1.1e-11 Score=119.90 Aligned_cols=194 Identities=35% Similarity=0.425 Sum_probs=103.8
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCC-CCcEEeccccccCCCCCccccCCCCCCEEEccCC
Q 047097 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLF-KLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 126 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
.++...+.+. .-...+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666553 22233344466777777777766 4555555553 6777777777666 44455666666666666666
Q ss_pred cCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCc
Q 047097 205 ILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPV 284 (443)
Q Consensus 205 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 284 (443)
.+...+......+.|+.|++++|.+. .+|........|+++.+++|... ..+.... .+.++..+.+.+|.+. .++.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-eccc
Confidence 66555544445555566666666555 44444344444555555555322 2332222 4455555555555544 2244
Q ss_pred cccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCC
Q 047097 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 285 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
.+..++.++.|++++|.++.... ++...+++.|++++|.+..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 44555555555555555543222 4455555555555555443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=1.9e-12 Score=115.05 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=94.9
Q ss_pred cccCCCCCcEEeccccccCCC----CCccccCCCCCCEEEccCCcCccc----c-------ccccCCCcCcEEecccCcC
Q 047097 165 AIGGLFKLERLFIFHNHITGQ----LPASIGNLSSLLAFDVRENILWGR----I-------DSLVQLRNLLLLDIAFNHF 229 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~-------~~l~~l~~L~~L~l~~n~~ 229 (443)
.+..+..+..+++++|.+... +...+.+.++|+..+++.-..... + ..+..+++|+++++|+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 455667888888888877532 233455666777777765322111 1 2344556777777777777
Q ss_pred CCCCChh----hhCCCCCcEEEcccCCCCccCchhh------------hcCCCCccEEeCCCCcCccc----CCccccCC
Q 047097 230 SGTIPPP----IFNISSLEVISLSENRFTGSLPVDT------------GVNLPNLRQLSPNGNNFTGS----IPVSLSNA 289 (443)
Q Consensus 230 ~~~~~~~----l~~~~~L~~L~l~~n~~~~~~~~~~------------~~~~~~L~~L~l~~n~l~~~----~~~~l~~~ 289 (443)
....++. +.++..|++|.+.+|.+.-.-...+ ....+.|+++...+|.+... +...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 6444333 3456777777777776641111110 01334555555555544311 11223344
Q ss_pred CCCCEEecccCccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 290 SRLEMIEFSRNQFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
+.|+.+.+..|.|... ....+..+++|+.|||.+|.++.... ..+...+..+++|+.|++++|.+..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs--~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS--VALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH--HHHHHHhcccchheeeccccccccc
Confidence 4555555555544311 11123445555555555554433221 1222334444455555555554443
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=7.3e-12 Score=121.18 Aligned_cols=180 Identities=30% Similarity=0.483 Sum_probs=92.8
Q ss_pred CCCCCcEEEcccCCCCccCchhhhcCCC-CccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 047097 239 NISSLEVISLSENRFTGSLPVDTGVNLP-NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317 (443)
Q Consensus 239 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 317 (443)
..+.++.+++.+|.+. .++.... ... +|+.|++++|.+. .+|..+..++.|+.|++++|+++. ++......+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhh
Confidence 3344555555555555 4444333 232 5555555555554 333445555555555555555552 222223455555
Q ss_pred EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCe
Q 047097 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNW 397 (443)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 397 (443)
.|++++|.+..... .......|+++.+++|.+. ..+..+... .++..+.+.+|++. ..+..++.+++++.
T Consensus 190 ~L~ls~N~i~~l~~-------~~~~~~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~l~~ 259 (394)
T COG4886 190 NLDLSGNKISDLPP-------EIELLSALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLPESIGNLSNLET 259 (394)
T ss_pred heeccCCccccCch-------hhhhhhhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-eccchhccccccce
Confidence 55555555544332 1123334566666666433 233333333 44555555666555 22455666666666
Q ss_pred eccccccccccCchhccCCCCCCeeecccCcCccccC
Q 047097 398 LTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 398 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
|++++|+++ .++. +..+.+++.|++++|.++...|
T Consensus 260 L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 260 LDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 666666666 4444 5566666666666666665444
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=1.2e-12 Score=116.36 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=39.5
Q ss_pred CCCCcEEEcccCCCCccCc---hhhhcCCCCccEEeCCCCcCccc----CCccccCCCCCCEEecccCccccc----CCc
Q 047097 240 ISSLEVISLSENRFTGSLP---VDTGVNLPNLRQLSPNGNNFTGS----IPVSLSNASRLEMIEFSRNQFSGR----VSV 308 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~ 308 (443)
-+.|++++...|++...-. ...+...+.|+.+.+..|.+... ....+..|+.|+.|++.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3455555555555442111 11122334555555555544311 112334555555555555554421 122
Q ss_pred cccCCCCCCEEECCCCcCCC
Q 047097 309 DFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 309 ~~~~l~~L~~L~l~~n~l~~ 328 (443)
.++.+++|+.|++++|.+..
T Consensus 236 aL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred Hhcccchheeeccccccccc
Confidence 23445555555555555543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-12 Score=119.78 Aligned_cols=211 Identities=19% Similarity=0.150 Sum_probs=147.2
Q ss_pred CCCCCCCEEEccCCcCCCCCC-ccccCCCCCcEEecccccceec--cCccccCCCCCcEEeccccccCCCCCcc-ccCCC
Q 047097 119 GRQDMLEGLVLSNNSFSGTIP-TNLSRCSNLIELFVDTNYLVGE--IPAAIGGLFKLERLFIFHNHITGQLPAS-IGNLS 194 (443)
Q Consensus 119 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~ 194 (443)
+++++|+...+.++....... .....|++++.|+++.|-+... +......+++|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 457789999999888763322 3567889999999999876632 2234567899999999999876332221 13568
Q ss_pred CCCEEEccCCcCcccc--ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCc-hhhhcCCCCccEE
Q 047097 195 SLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLP-VDTGVNLPNLRQL 271 (443)
Q Consensus 195 ~L~~L~l~~n~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L 271 (443)
+|+.|.++.|.++... ..+..+|+|+.|++..|............+..|++||+++|++. .++ ......++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 8999999999888554 56678899999999998533233333455778999999999887 343 2222378899999
Q ss_pred eCCCCcCcccC-Ccc-----ccCCCCCCEEecccCccccc-CCccccCCCCCCEEECCCCcCCCcC
Q 047097 272 SPNGNNFTGSI-PVS-----LSNASRLEMIEFSRNQFSGR-VSVDFSRLKNLSWLNMGINNLGTGT 330 (443)
Q Consensus 272 ~l~~n~l~~~~-~~~-----l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
.++.+.+++.- |+. ....++|+.|++..|++.+. ....+..+++|+.|.+..|.+....
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 99998887432 222 24568899999999988531 2223556677788887777776443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=3.8e-13 Score=126.45 Aligned_cols=192 Identities=29% Similarity=0.364 Sum_probs=127.3
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
.+..|++.|++. .+|..+..|-.|+.+.++.|.+. .+|.++.++..|.+++++.|.++ ..|..+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 445566666654 45555666666777777777776 66777777777777777777776 5666665543 67777777
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP 235 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|+++ .+|+.++...+|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+...+..+..+ .|..||++.|++. .+|.
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecch
Confidence 7776 66777777777777777777776 56677777777777777777777776666544 3677777777776 6677
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhc--CCCCccEEeCCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGV--NLPNLRQLSPNGN 276 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n 276 (443)
.|.+++.|++|.|.+|.+. .-|..+.. ...-.++|+..-+
T Consensus 229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7777777777777777776 44444321 1122345555555
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=3.1e-13 Score=127.07 Aligned_cols=194 Identities=23% Similarity=0.318 Sum_probs=141.0
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEE
Q 047097 121 QDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200 (443)
Q Consensus 121 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 200 (443)
+.--...+++.|++. .+|..+..+..|+.+.+..|.+. .+|+.+.++..|..++++.|+++ ..|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 333456678888887 77887777778888888888776 77888888888888888888887 6677776664 77777
Q ss_pred ccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc
Q 047097 201 VRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 201 l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 280 (443)
+++|++...+..+.....|..|+.+.|.+. .+|..+..+.+|+.|.+..|.+. .+|.... .+ .|..||++.|+++
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC-ceeeeecccCcee-
Confidence 888887777766667777888888888776 66777777788888888887777 6776665 33 4777888888877
Q ss_pred cCCccccCCCCCCEEecccCcccccCCccc---cCCCCCCEEECCCC
Q 047097 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDF---SRLKNLSWLNMGIN 324 (443)
Q Consensus 281 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n 324 (443)
.+|..|.+|..|++|-|.+|.+. ..|..+ +...=.++|+...+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77777888888888888888776 334333 22333556666555
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.1e-12 Score=116.82 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=65.8
Q ss_pred ccCCCCCCEEEccCCcCcccc---ccccCCCcCcEEecccCcCCCCCChhh-hCCCCCcEEEcccCCCCccCchhhhcCC
Q 047097 190 IGNLSSLLAFDVRENILWGRI---DSLVQLRNLLLLDIAFNHFSGTIPPPI-FNISSLEVISLSENRFTGSLPVDTGVNL 265 (443)
Q Consensus 190 l~~l~~L~~L~l~~n~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 265 (443)
...|++.+.|+++.|.+..-. ....++++|+.|+++.|.+.-...... ..+++|+.|.++.|.++-.--..+...+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 344444455555544433222 233445555555555554432111111 1234444555555544411111122244
Q ss_pred CCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC-CccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCC
Q 047097 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCS 344 (443)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 344 (443)
|+|+.|++.+|...........-+..|++|+|++|.+.+.. ....+.++.|+.|+++.+.+......+.+.......++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 55555555554311111222223344555555555443211 11234445555555554444332222111112233444
Q ss_pred CCCEEEccCCcc
Q 047097 345 KLERLYFNRNRF 356 (443)
Q Consensus 345 ~L~~L~Ls~n~l 356 (443)
+|++|+++.|++
T Consensus 302 kL~~L~i~~N~I 313 (505)
T KOG3207|consen 302 KLEYLNISENNI 313 (505)
T ss_pred cceeeecccCcc
Confidence 555555555544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=5.1e-12 Score=110.07 Aligned_cols=204 Identities=25% Similarity=0.255 Sum_probs=133.8
Q ss_pred cccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCC-CcCcccCCccccCCC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG-NNFTGSIPVSLSNAS 290 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~ 290 (443)
.+.-+++|+.+.++.+.-. .+......-|.|+++.+.+..+. ..|..+ ....+....... .-.+|..........
T Consensus 209 ~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~--pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLL--PETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred chHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-cccccc--chhhhcCccCCCCCccCCceEEecchHh
Confidence 3444566777777666433 22222333466777776665443 222111 111111111110 111222223333446
Q ss_pred CCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccC
Q 047097 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 370 (443)
.|+++|+++|.|+ .+..+..-.|.++.|++++|.+... +.+..+++|+.||||+|.++ .+..|-..+ -+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--------~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL-GN 353 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--------QNLAELPQLQLLDLSGNLLA-ECVGWHLKL-GN 353 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--------hhhhhcccceEeecccchhH-hhhhhHhhh-cC
Confidence 7899999999887 4555567789999999999988754 33777899999999999988 555554554 67
Q ss_pred CCEEeCcCCcCcccCchhhhcccCCCeecccccccccc-CchhccCCCCCCeeecccCcCccc
Q 047097 371 IKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT-IPPEIGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 371 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
++.|.++.|.+.. ...+..+-+|..||+++|+|... -...++++|.|+.+.+.+|++.+.
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999999998863 35678888999999999999842 244688999999999999999854
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=4.6e-11 Score=99.57 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=39.7
Q ss_pred CCCCEEecccCcccccCCcccc-CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc
Q 047097 290 SRLEMIEFSRNQFSGRVSVDFS-RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 368 (443)
.++++|++.+|.|+.. ..++ .+.+|+.|++++|.++... .+..++.|++|++++|.++ .+...+...+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--------~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--------GLPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T--------T----TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--------CccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 3455555555555421 1232 3455566666666554432 2445566666666666666 3443343323
Q ss_pred cCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCch----hccCCCCCCeeecc
Q 047097 369 STIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPP----EIGELKNLQLLNLG 425 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~----~~~~l~~L~~L~l~ 425 (443)
++|+.|++++|++.+. .-..+..+++|+.|++.+|.+.. .+. .+..+|+|+.||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence 6677777777766542 22445667777777777777763 232 34567777777643
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=9.3e-12 Score=108.46 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEe
Q 047097 193 LSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLS 272 (443)
Q Consensus 193 l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 272 (443)
...|+++|+++|.++...+...-.|+++.|++++|.+... ..++.+++|+.||+++|.++ .+.-+- ..+.+++.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTLK 358 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeeee
Confidence 3445555555555554444444455555555555555411 22555555555555555544 332221 1444555555
Q ss_pred CCCCcCcccCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCEEECCCCcCC
Q 047097 273 PNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 273 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
+.+|.+. ..+.+..+.+|..||+++|+|.. .....++++|.|+.+.+.+|.+.
T Consensus 359 La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5555443 12233444445555555554432 11122344444444444444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=9.8e-11 Score=97.60 Aligned_cols=107 Identities=27% Similarity=0.342 Sum_probs=27.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccC-CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccc-cCCCCCc
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIG-RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAI-GGLFKLE 173 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~ 173 (443)
+...+++|+|.+|.|+. + +.++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|+++. +++.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 33456666666666652 2 2233 3556666666666665 222 35556666666666666652 33333 2456666
Q ss_pred EEeccccccCCCC-CccccCCCCCCEEEccCCcCc
Q 047097 174 RLFIFHNHITGQL-PASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 174 ~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~ 207 (443)
+|++++|++.... -..++.+++|+.|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666654311 123444555555555555444
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-10 Score=120.09 Aligned_cols=85 Identities=22% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCchh---ccCCC
Q 047097 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPPE---IGELK 417 (443)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~---~~~l~ 417 (443)
-.++|+.|.+..+.....+....... ..++.+-+..+.+.+. .-...+.++++..+.+.+=.+.....+. ...+|
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~-~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKAL-LELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHh-hhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc
Confidence 44678888888776554433333332 3444445555555544 3344555555555555443332111111 23455
Q ss_pred CCCeeecccC
Q 047097 418 NLQLLNLGGN 427 (443)
Q Consensus 418 ~L~~L~l~~n 427 (443)
.+..+.+.+|
T Consensus 847 ~~~~~~i~~~ 856 (889)
T KOG4658|consen 847 LLSTLTIVGC 856 (889)
T ss_pred cccccceecc
Confidence 5555666654
No 37
>PLN03150 hypothetical protein; Provisional
Probab=99.06 E-value=5.6e-10 Score=113.29 Aligned_cols=110 Identities=20% Similarity=0.366 Sum_probs=80.2
Q ss_pred CCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L 371 (443)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+ ..++.+++|+.|+|++|.+++.+|..+..+ ++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP------~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L-~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP------PSLGSITSLEVLDLSYNSFNGSIPESLGQL-TSL 492 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC------hHHhCCCCCCEEECCCCCCCCCCchHHhcC-CCC
Confidence 6677777777777777777777777777777777776666 556777777777777777777777777765 677
Q ss_pred CEEeCcCCcCcccCchhhhcc-cCCCeecccccccccc
Q 047097 372 KQIAMGRNRISGTIPPEIRKL-VSLNWLTIDRNQLTGT 408 (443)
Q Consensus 372 ~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~ 408 (443)
+.|++++|+++|.+|..+... .++..+++.+|.....
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 777787777777777777653 3566677777765433
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=1.3e-10 Score=120.53 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=61.1
Q ss_pred CCCCEEECCCCc--CcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 98 SFLRYINLANNG--FLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 98 ~~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
+.|++|-+..|. +....++.|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..++++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666665554 33223333555666666666665544456666666666666666666665 566666666666666
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENI 205 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 205 (443)
++..+.....+|.....+.+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 666554443444444456666666665443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=1.9e-09 Score=73.87 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=48.2
Q ss_pred cCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcC
Q 047097 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
++|+.|++++|+++...+..|.++++|++|++++|.++...|..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577888888888755556778888888888888888866667888888888888888875
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.7e-10 Score=108.28 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=49.9
Q ss_pred CCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEe
Q 047097 144 RCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLD 223 (443)
Q Consensus 144 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~ 223 (443)
.+..++.+.+..|.+.. +-..+..+.+|..|++.+|.+.. +...+..+++|+.|++++|.+.... .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 34455555566666552 22335556666666666666652 2222444555555555555544332 122223344445
Q ss_pred cccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 224 IAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
+++|.+... ..+..++.|+.+++++|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhh
Confidence 555444311 12223444444444444444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.5e-09 Score=71.56 Aligned_cols=57 Identities=32% Similarity=0.355 Sum_probs=22.9
Q ss_pred CCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
|++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444333333444444444444444443333333344444444444433
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=2.8e-10 Score=110.42 Aligned_cols=180 Identities=23% Similarity=0.251 Sum_probs=123.6
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc----------ccCCccccCCCCCCEEecccCccc
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT----------GSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~----------~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
|-.++.+.+|+.|.+.++.+. .. ..+..--..|++|...+ .++ +.+..++. ..+|...+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~-~~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS-TA-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchh-hh-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 666788889999999988876 21 11110012334443221 111 11222111 136788888888886
Q ss_pred ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcc
Q 047097 304 GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISG 383 (443)
Q Consensus 304 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 383 (443)
.+...+.-++.++.|+|+.|+++.. ..+..|++|++|||++|.+. .+|..-... -.|+.|.+++|.++.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLLNLRNNALTT 246 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhc-cccccchhh-hhheeeeecccHHHh
Confidence 4555677788999999999988653 45788999999999999998 666532222 349999999999883
Q ss_pred cCchhhhcccCCCeeccccccccccC-chhccCCCCCCeeecccCcCc
Q 047097 384 TIPPEIRKLVSLNWLTIDRNQLTGTI-PPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~ 430 (443)
. ..+.++.+|+.||+++|-+.+.- -+-++.+..|+.|+|.||++-
T Consensus 247 L--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 L--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3 46889999999999999887532 223556778999999999874
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1e-09 Score=106.45 Aligned_cols=248 Identities=24% Similarity=0.273 Sum_probs=166.4
Q ss_pred cCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEE
Q 047097 167 GGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVI 246 (443)
Q Consensus 167 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 246 (443)
..+..++.+++..|.+.. +-..+..+++|+.+++..|.+......+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 345667777788887763 344577788888999998888777665778888889999988887443 35666778888
Q ss_pred EcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 247 SLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 247 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
++++|.+. .+.... .++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 146 ~l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 88888887 443321 47888888888888874333 1 46777888888888877632 223444455555777777
Q ss_pred CCCcCCCchhhhhhhcCCC--CCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccc
Q 047097 326 LGTGTANELDFINLLTNCS--KLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRN 403 (443)
Q Consensus 326 l~~~~~~~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 403 (443)
+....+ +.... .|+.+++++|++. ..+..+... ..+..+++..|.+... ..+.....+..+...+|
T Consensus 220 i~~~~~--------l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~-~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 220 ISKLEG--------LNELVMLHLRELYLSGNRIS-RSPEGLENL-KNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN 287 (414)
T ss_pred ceeccC--------cccchhHHHHHHhcccCccc-ccccccccc-ccccccchhhcccccc--ccccccchHHHhccCcc
Confidence 654433 22222 3788888888887 333333332 6678888888877643 23555666777777777
Q ss_pred ccccc---Cchh-ccCCCCCCeeecccCcCccccCc
Q 047097 404 QLTGT---IPPE-IGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 404 ~~~~~---~p~~-~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
.+... .... ....+.++...+.+|++....+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 288 KLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred hhcchhhhhccccccccccccccccccCcccccccc
Confidence 66521 1222 45567888888998888766654
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.9e-09 Score=94.21 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=95.4
Q ss_pred cCcEEecccCcCCCC-CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCc-Ccc-cCCccccCCCCCCE
Q 047097 218 NLLLLDIAFNHFSGT-IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNN-FTG-SIPVSLSNASRLEM 294 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~l~~~~~L~~ 294 (443)
.|+++|++...++.. +...+.+|.+|+.|.+.++++.+.+-..++ ...+|+.|+++.+. +++ .....+.+|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 467777776666522 223345667777777777776666655555 56667777776653 221 11122456677777
Q ss_pred EecccCcccccCCcc-cc-CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC-cccccCchhHHhhccCC
Q 047097 295 IEFSRNQFSGRVSVD-FS-RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN-RFEGELPHSVANLSSTI 371 (443)
Q Consensus 295 L~l~~n~l~~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~~L 371 (443)
|++++|.+....... .. --++|+.|+++++.-.-.. . ........||+|..|||++| .++......++++ +.|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-s--h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-S--HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYL 340 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-h--HHHHHHHhCCceeeeccccccccCchHHHHHHhc-chh
Confidence 777777554322111 11 1255666666654221100 0 12233456677777777766 4443333344443 556
Q ss_pred CEEeCcCCcCcccCchh---hhcccCCCeeccccc
Q 047097 372 KQIAMGRNRISGTIPPE---IRKLVSLNWLTIDRN 403 (443)
Q Consensus 372 ~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n 403 (443)
++|.++.|..- +|.. +...++|.+|++-++
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 66666666532 3332 345566666666655
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.4e-08 Score=88.76 Aligned_cols=204 Identities=17% Similarity=0.147 Sum_probs=111.5
Q ss_pred CCcCcEEecccCcCCCC--CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCccc-CCccccCCCCC
Q 047097 216 LRNLLLLDIAFNHFSGT--IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS-IPVSLSNASRL 292 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L 292 (443)
...++++|+.+|.++.. +...+.++|.|++|+++.|.+...|...-. ...+|+.|.+.+..+... ....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45566666766666532 333455677777777777766533322211 456777887777776533 23345667777
Q ss_pred CEEecccCccccc--CCccccC-CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc
Q 047097 293 EMIEFSRNQFSGR--VSVDFSR-LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS 369 (443)
Q Consensus 293 ~~L~l~~n~l~~~--~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 369 (443)
++|+++.|.+... ....... -+.+++|+.-.|...... .....-..+|++..+.+..|+++..-...-+.-.+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~----~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL----NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH----HHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 8888877743211 0011111 124444444433221000 00012234577777778888776433322222235
Q ss_pred CCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCch------hccCCCCCCeeec
Q 047097 370 TIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPP------EIGELKNLQLLNL 424 (443)
Q Consensus 370 ~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~L~l 424 (443)
.+..|+++.|++..- --+.+.++++|..|.++++.+.+.+-. -++.+++++.|+=
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 566777888877632 224567788888888888877643221 2456777777653
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.51 E-value=8.4e-08 Score=83.00 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=55.0
Q ss_pred cccCCCCCcEEeccccccCCCCC----ccccCCCCCCEEEccCCcCcccc-----------ccccCCCcCcEEecccCcC
Q 047097 165 AIGGLFKLERLFIFHNHITGQLP----ASIGNLSSLLAFDVRENILWGRI-----------DSLVQLRNLLLLDIAFNHF 229 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~-----------~~l~~l~~L~~L~l~~n~~ 229 (443)
.+..+..+..+++++|.+...-. ..+.+-.+|+..+++.-...... ..+.++++|+.++++.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457788888888887764322 23445566777766653222111 3455677777777777777
Q ss_pred CCCCChh----hhCCCCCcEEEcccCCCC
Q 047097 230 SGTIPPP----IFNISSLEVISLSENRFT 254 (443)
Q Consensus 230 ~~~~~~~----l~~~~~L~~L~l~~n~~~ 254 (443)
....|.. +++.+.|.+|.+++|.+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 6555543 345566777777777654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2.8e-08 Score=86.98 Aligned_cols=86 Identities=21% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCCCCcEEeccccccee--ccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc--ccccCCCcC
Q 047097 144 RCSNLIELFVDTNYLVG--EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNL 219 (443)
Q Consensus 144 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~l~~l~~L 219 (443)
.++.++.+++.+|.++. .+...+.++++|++|+++.|.+...+...-....+|+.|-+.+..+.... ..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 44666777777776653 23334567777777777777776444332234556677777666554433 455566677
Q ss_pred cEEecccCcC
Q 047097 220 LLLDIAFNHF 229 (443)
Q Consensus 220 ~~L~l~~n~~ 229 (443)
++|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7777776643
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.6e-09 Score=93.30 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=41.7
Q ss_pred CcEEecccccceec-cCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCC-cCcccc--ccccCCCcCcEEe
Q 047097 148 LIELFVDTNYLVGE-IPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI--DSLVQLRNLLLLD 223 (443)
Q Consensus 148 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~--~~l~~l~~L~~L~ 223 (443)
|+++|++...++.. +-..+..+.+|+.|.+.++.+.+.+...+++-.+|+.++++.+ +++... -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55666655554421 2223445556666666666555555555555555555555554 222222 2344455555555
Q ss_pred cccCcCC
Q 047097 224 IAFNHFS 230 (443)
Q Consensus 224 l~~n~~~ 230 (443)
++++.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 5555443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=9.1e-09 Score=100.17 Aligned_cols=179 Identities=22% Similarity=0.266 Sum_probs=114.4
Q ss_pred ccccCCCcCcEEecccCcCCCCCChhhhCC-CCCcEEEcccCC---------CCccCchhhhcCCCCccEEeCCCCcCcc
Q 047097 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIFNI-SSLEVISLSENR---------FTGSLPVDTGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~---------~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 280 (443)
-.+..+.+|++|.+.++++... ..+..+ ..|++|..++.- -.|.+.... ....|...+.++|.+.
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV- 177 (1096)
T ss_pred ceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH-
Confidence 4566788999999999987621 111111 223333322210 001121111 2345777788888877
Q ss_pred cCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccC
Q 047097 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL 360 (443)
Q Consensus 281 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 360 (443)
....++.-++.++.|+|++|+++... .+..+++|+.|||++|.++.... ....+|. |..|++++|.++ ++
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~------l~~~gc~-L~~L~lrnN~l~-tL 247 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQ------LSMVGCK-LQLLNLRNNALT-TL 247 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccc------cchhhhh-heeeeecccHHH-hh
Confidence 56667777788888888888887543 56788888888888888866543 3344454 888888888887 22
Q ss_pred chhHHhhccCCCEEeCcCCcCccc-CchhhhcccCCCeecccccccc
Q 047097 361 PHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 361 p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
..+.++ .+|+.||+++|-+.+. -..-+..+..|+.|.|.||.+-
T Consensus 248 -~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 -RGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -hhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 345554 7788888888877653 1123556777888888888765
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.46 E-value=3.8e-08 Score=85.06 Aligned_cols=242 Identities=17% Similarity=0.163 Sum_probs=131.5
Q ss_pred cCCCCCcEEecccccceeccCc----cccCCCCCcEEecccccc---CCCCC-------ccccCCCCCCEEEccCCcCcc
Q 047097 143 SRCSNLIELFVDTNYLVGEIPA----AIGGLFKLERLFIFHNHI---TGQLP-------ASIGNLSSLLAFDVRENILWG 208 (443)
Q Consensus 143 ~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~l~~n~~~~ 208 (443)
..+..+..+++++|.+.....+ .+.+-.+|+..++++-.. .+.++ ..+.+|++|+..+++.|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3467888999999988754443 345566788887765321 11222 346688999999999987654
Q ss_pred cc-----ccccCCCcCcEEecccCcCCCC----CChhh---------hCCCCCcEEEcccCCCCccCchhhh----cCCC
Q 047097 209 RI-----DSLVQLRNLLLLDIAFNHFSGT----IPPPI---------FNISSLEVISLSENRFTGSLPVDTG----VNLP 266 (443)
Q Consensus 209 ~~-----~~l~~l~~L~~L~l~~n~~~~~----~~~~l---------~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~ 266 (443)
.. +.+++...|.+|.+++|.+... +...+ +.-|.|++++...|++. ..+.... ....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 33 4567778899999999887522 11111 23456777777777665 3332211 1123
Q ss_pred CccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCC
Q 047097 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKL 346 (443)
Q Consensus 267 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L 346 (443)
.|+++.+..|.+. |..+.. | ....+..+.+|+.||+..|.++-... ......+...+.|
T Consensus 186 ~lk~vki~qNgIr---pegv~~------L----------~~~gl~y~~~LevLDlqDNtft~~gS--~~La~al~~W~~l 244 (388)
T COG5238 186 NLKEVKIQQNGIR---PEGVTM------L----------AFLGLFYSHSLEVLDLQDNTFTLEGS--RYLADALCEWNLL 244 (388)
T ss_pred CceeEEeeecCcC---cchhHH------H----------HHHHHHHhCcceeeeccccchhhhhH--HHHHHHhcccchh
Confidence 5555555555443 221100 0 00012344555555555555443221 1222344555556
Q ss_pred CEEEccCCcccccCchhHHhh-----ccCCCEEeCcCCcCcccCchh-----h--hcccCCCeecccccccc
Q 047097 347 ERLYFNRNRFEGELPHSVANL-----SSTIKQIAMGRNRISGTIPPE-----I--RKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 347 ~~L~Ls~n~l~~~~p~~~~~~-----~~~L~~L~l~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~~~ 406 (443)
+.|.+.+|-++......+... .++|..|...+|...+.+... + ..++-|..|.+.+|+|.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 666666666654444333221 256666666666555432211 1 24556666777777766
No 51
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.45 E-value=2.5e-07 Score=57.89 Aligned_cols=39 Identities=56% Similarity=1.031 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCCC--CCCCceeeeeeC
Q 047097 32 ETDRLALLAIKSQLH-DPLGVTSSWNNS--MNLCQWTGVICG 70 (443)
Q Consensus 32 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~~~~~~c~ 70 (443)
++|++||++||.++. +|...+.+|+.+ .++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 678999999999999 577889999987 799999999995
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=6.1e-08 Score=75.16 Aligned_cols=115 Identities=16% Similarity=0.225 Sum_probs=51.9
Q ss_pred CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
....|+..++++|.+....+ ..-..++.++.|++++|.+. .+|..+..+ +.|+.|+++.|.+. ..|+.+..
T Consensus 51 ~~~el~~i~ls~N~fk~fp~------kft~kf~t~t~lNl~~neis-dvPeE~Aam-~aLr~lNl~~N~l~-~~p~vi~~ 121 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPK------KFTIKFPTATTLNLANNEIS-DVPEELAAM-PALRSLNLRFNPLN-AEPRVIAP 121 (177)
T ss_pred CCceEEEEecccchhhhCCH------HHhhccchhhhhhcchhhhh-hchHHHhhh-HHhhhcccccCccc-cchHHHHH
Confidence 33444444555555443332 22233344555555555555 445544443 44555555555554 44444444
Q ss_pred ccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 392 LVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 392 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
+.++-.|+..+|.+. .+|-.+-.-...-..++.++++.+.-|..
T Consensus 122 L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 122 LIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred HHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 555555555555444 33333222222223344444554444443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=1.5e-07 Score=73.01 Aligned_cols=93 Identities=24% Similarity=0.364 Sum_probs=64.0
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCC
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK 417 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 417 (443)
..+.....|+..+|++|.++ .+|..+...++.++.|++++|+++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.
T Consensus 47 y~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~ 123 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI 123 (177)
T ss_pred HHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHH
Confidence 34445556677777777777 666666665566777777777777 56666777777777777777777 6666666677
Q ss_pred CCCeeecccCcCccccC
Q 047097 418 NLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 418 ~L~~L~l~~n~l~~~~p 434 (443)
+|-.|+..+|... ++|
T Consensus 124 ~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 124 KLDMLDSPENARA-EID 139 (177)
T ss_pred hHHHhcCCCCccc-cCc
Confidence 7777777777665 444
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.1e-06 Score=53.85 Aligned_cols=37 Identities=41% Similarity=0.650 Sum_probs=24.5
Q ss_pred cCCCeeccccccccccCchhccCCCCCCeeecccCcCc
Q 047097 393 VSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 393 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777777 56666777777777777777776
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=1.8e-05 Score=74.54 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=71.2
Q ss_pred ccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC-cCcccCCccccCCCC
Q 047097 213 LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN-NFTGSIPVSLSNASR 291 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~ 291 (443)
+..+.+++.|++++|.++ .+|. -.++|++|.++++.-...+|..+ +++|++|++.+| .+. .+|. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 334577778888877665 4441 23457777777754333555432 356777777777 333 3443 4
Q ss_pred CCEEecccCcccccCCccccCC-CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRL-KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 370 (443)
|+.|++..+.... +..+ ++|+.|.+.+++...... ..-.-.++|++|++++|... ..|.. ++.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~------lp~~LPsSLk~L~Is~c~~i-~LP~~---LP~S 178 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQAR------IDNLISPSLKTLSLTGCSNI-ILPEK---LPES 178 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccccccccccc------cccccCCcccEEEecCCCcc-cCccc---cccc
Confidence 5666666554321 1122 245566654322110000 00011256777777776654 33332 2345
Q ss_pred CCEEeCcCC
Q 047097 371 IKQIAMGRN 379 (443)
Q Consensus 371 L~~L~l~~n 379 (443)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777777655
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.7e-05 Score=66.03 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=57.8
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCccc-Cchhhhccc
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLV 393 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~ 393 (443)
....+|+++|.+... ..+..++.|.+|.+.+|.++ .+...+....++|+.|.+.+|.+... .-+-+..|+
T Consensus 43 ~~d~iDLtdNdl~~l--------~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--------DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccchhhc--------ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 344555555555332 22455556666666666666 34444555456666666666665532 122355677
Q ss_pred CCCeeccccccccccC---chhccCCCCCCeeeccc
Q 047097 394 SLNWLTIDRNQLTGTI---PPEIGELKNLQLLNLGG 426 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~~ 426 (443)
+|++|.+-+|+.+..- --.+..+|+|+.||+++
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777777777766221 11245677777777764
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1e-05 Score=50.68 Aligned_cols=36 Identities=25% Similarity=0.635 Sum_probs=24.8
Q ss_pred CCCEEeCcCCcCcccCchhhhcccCCCeecccccccc
Q 047097 370 TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 370 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
+|+.|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5677777777777 45656777777777777777776
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=6.3e-05 Score=70.90 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=91.9
Q ss_pred hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccC-cccccCCccccCCCC
Q 047097 237 IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN-QFSGRVSVDFSRLKN 315 (443)
Q Consensus 237 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 315 (443)
+..+.+++.|++++|.++ .+|. -+++|++|.+++|.-...+|..+ .++|++|++++| .+. .+| ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 445788999999999888 7872 35679999999865544667655 368999999998 443 333 35
Q ss_pred CCEEECCCCcCCCcCCCchhhhhhhcCC-CCCCEEEccCCc-cc-ccCchhHHhhccCCCEEeCcCCcCcccCchhhhcc
Q 047097 316 LSWLNMGINNLGTGTANELDFINLLTNC-SKLERLYFNRNR-FE-GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKL 392 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~Ls~n~-l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 392 (443)
|+.|+++.+.... +..+ ++|+.|.+.++. .. ..+| ..++++|+.|++++|... ..|..+.
T Consensus 114 Le~L~L~~n~~~~-----------L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 114 VRSLEIKGSATDS-----------IKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred cceEEeCCCCCcc-----------cccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--
Confidence 7888887655422 1122 467888875432 11 1112 124578999999998866 4454443
Q ss_pred cCCCeecccccc
Q 047097 393 VSLNWLTIDRNQ 404 (443)
Q Consensus 393 ~~L~~L~l~~n~ 404 (443)
.+|+.|+++.+.
T Consensus 177 ~SLk~L~ls~n~ 188 (426)
T PRK15386 177 ESLQSITLHIEQ 188 (426)
T ss_pred ccCcEEEecccc
Confidence 588899988763
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=6.7e-06 Score=83.76 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=54.2
Q ss_pred CCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccc-cCCccccCCCCCCE
Q 047097 240 ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSW 318 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 318 (443)
+|+|+.|.+.+-.+...--..+..++|+|..||+++.+++.. ..++.+++|+.|.+.+-.+.. ..-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555554433111112233556666666666555522 344555555555555444432 11122445556666
Q ss_pred EECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 319 LNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
||+|.........-...+.+.-..+|+|+.||.|++.+.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 66655443322211112223333455666666665555443
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.83 E-value=4.6e-07 Score=83.18 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCCEEECCCCcCccc--CCcccCCCCCCCEEEccCCc-CCCCCCccc-cCCCCCcEEeccccc-ceeccCc-cccCCCCC
Q 047097 99 FLRYINLANNGFLGE--IPPQIGRQDMLEGLVLSNNS-FSGTIPTNL-SRCSNLIELFVDTNY-LVGEIPA-AIGGLFKL 172 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-~~~~~~~-~l~~l~~L 172 (443)
.|+.|.+.++.-.+. +-..-..++++++|++.++. +++..-..+ ..+++|+++++..|. ++...-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455555555432221 11222345555555555553 221111112 245556666665532 2222111 12345566
Q ss_pred cEEecccc
Q 047097 173 ERLFIFHN 180 (443)
Q Consensus 173 ~~L~l~~n 180 (443)
++++++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 66666554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=4.6e-05 Score=63.52 Aligned_cols=84 Identities=20% Similarity=0.147 Sum_probs=35.7
Q ss_pred ccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCC-CccccCCCCCCEEEccCCcCcccc----ccccCC
Q 047097 142 LSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQL-PASIGNLSSLLAFDVRENILWGRI----DSLVQL 216 (443)
Q Consensus 142 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~----~~l~~l 216 (443)
|..++.|.+|.+++|+++...|.--..+++|+.|.+.+|++.... -..+..|++|++|.+.+|...... ..+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 334455555555555555333322223344555555555443110 112334444555544444433222 233444
Q ss_pred CcCcEEecc
Q 047097 217 RNLLLLDIA 225 (443)
Q Consensus 217 ~~L~~L~l~ 225 (443)
++|+.||.+
T Consensus 140 p~l~~LDF~ 148 (233)
T KOG1644|consen 140 PSLRTLDFQ 148 (233)
T ss_pred CcceEeehh
Confidence 444444444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=2.3e-05 Score=80.01 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=98.6
Q ss_pred CCCcEEEcccCCC-CccCchhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEecccCcccccCCccccCCCCCCE
Q 047097 241 SSLEVISLSENRF-TGSLPVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSW 318 (443)
Q Consensus 241 ~~L~~L~l~~n~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
.+|++|+++|... ...-|..++..+|+|+.|.+.+-.+.. .+.....++|+|..||+++..++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5677777777542 234455667788999999999877752 2333446789999999999988743 45788899999
Q ss_pred EECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHh------hccCCCEEeCcCCcCcccCchhh-hc
Q 047097 319 LNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVAN------LSSTIKQIAMGRNRISGTIPPEI-RK 391 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------~~~~L~~L~l~~n~l~~~~~~~l-~~ 391 (443)
|.+.+-.+... .-...+-.+++|+.||+|...... .+..+.. ..|+|+.||.|+..+.+.+-+.+ ..
T Consensus 200 L~mrnLe~e~~-----~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 200 LSMRNLEFESY-----QDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred HhccCCCCCch-----hhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 88876655431 112456778999999999876652 2222221 13677777777776665433332 23
Q ss_pred ccCCCeecc
Q 047097 392 LVSLNWLTI 400 (443)
Q Consensus 392 l~~L~~L~l 400 (443)
-++|+.+.+
T Consensus 274 H~~L~~i~~ 282 (699)
T KOG3665|consen 274 HPNLQQIAA 282 (699)
T ss_pred CccHhhhhh
Confidence 344444443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.41 E-value=0.00075 Score=53.81 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=31.0
Q ss_pred cccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCC
Q 047097 93 YVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKL 172 (443)
Q Consensus 93 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 172 (443)
.|.++++|+.+.+.. .+...-..+|..+++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555555555543 233333344555555555555443 3323333344444555555543 2221222334444455
Q ss_pred cEEeccc
Q 047097 173 ERLFIFH 179 (443)
Q Consensus 173 ~~L~l~~ 179 (443)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5554433
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00046 Score=55.04 Aligned_cols=105 Identities=23% Similarity=0.307 Sum_probs=34.2
Q ss_pred ccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +..... ..+..+++++.+.+.+ .+. .++...+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~------~~F~~~~~l~~i~~~~-~~~-~i~~~~F 77 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD------NAFSNCKSLESITFPN-NLK-SIGDNAF 77 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T------TTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce------eeeecccccccccccc-ccc-ccccccc
Confidence 33444444444442 233333333444444555555442 322222 3344444455555543 222 2222222
Q ss_pred hhccCCCEEeCcCCcCcccCchhhhcccCCCeecccc
Q 047097 366 NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR 402 (443)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 402 (443)
..+++++.+++..+ +...-...+.++ +|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 22244555554433 222222334443 555555443
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.35 E-value=7.6e-06 Score=75.35 Aligned_cols=279 Identities=16% Similarity=0.110 Sum_probs=163.4
Q ss_pred CCcEEecccccceeccC--ccccCCCCCcEEeccccc-cCCCCCcc-ccCCCCCCEEEccCCcC-cccc--ccccCCCcC
Q 047097 147 NLIELFVDTNYLVGEIP--AAIGGLFKLERLFIFHNH-ITGQLPAS-IGNLSSLLAFDVRENIL-WGRI--DSLVQLRNL 219 (443)
Q Consensus 147 ~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~l~~n~~-~~~~--~~l~~l~~L 219 (443)
-|+.|.+.++.-.+.-+ ..-..++++++|.+.++. +++..-.. -..|++|+.+++..|.. +... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777887776432222 233567888888888775 22221112 24678888888888533 3222 234567888
Q ss_pred cEEecccCcC-CCC-CChhhhCCCCCcEEEcccCCCC-ccCchhhhcCCCCccEEeCCCCcCcccCC--ccccCCCCCCE
Q 047097 220 LLLDIAFNHF-SGT-IPPPIFNISSLEVISLSENRFT-GSLPVDTGVNLPNLRQLSPNGNNFTGSIP--VSLSNASRLEM 294 (443)
Q Consensus 220 ~~L~l~~n~~-~~~-~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~~~~L~~ 294 (443)
++++++++.- ++. +.....++..++.+...||.-. .+.-.........+.++++..|....... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 8998888742 221 2223344566677666665311 01111122245556677766664321111 11235678888
Q ss_pred EecccCccc-ccCCccc-cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccC-chhHHhhccCC
Q 047097 295 IEFSRNQFS-GRVSVDF-SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGEL-PHSVANLSSTI 371 (443)
Q Consensus 295 L~l~~n~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~~~~L 371 (443)
++.+++... +..-..+ .+.++|+.+.++.+..-+ +..+...-.+++.|+.+++.++...-.. -..+...++.|
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 988887443 2222223 467899999998875311 1112223356788999999888544222 22334446789
Q ss_pred CEEeCcCCc-Cccc----CchhhhcccCCCeecccccccc-ccCchhccCCCCCCeeecccCcC
Q 047097 372 KQIAMGRNR-ISGT----IPPEIRKLVSLNWLTIDRNQLT-GTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 372 ~~L~l~~n~-l~~~----~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
+.+.++++. +++. ....-+....|+.+.++++..+ +..-+.+..+++|+++++-+++-
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 999999885 3332 1223356778889999998655 34455567788999998888754
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00047 Score=60.10 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=34.5
Q ss_pred cCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCC--cCCCCCCccccCCCCCcEEecccccce
Q 047097 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNN--SFSGTIPTNLSRCSNLIELFVDTNYLV 159 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~ 159 (443)
+......+..|+.|++.+..++. -..+-.+++|++|.++.| ++.+.++.....+|+|+++.+++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33334445555555555555441 112334555666666666 444444444445566666666666554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.84 E-value=0.00012 Score=72.91 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=25.7
Q ss_pred CCcCcEEecccCc-CCCCCChhhhC-CCCCcEEEcccCC-CCccCchhhhcCCCCccEEeCCCCc
Q 047097 216 LRNLLLLDIAFNH-FSGTIPPPIFN-ISSLEVISLSENR-FTGSLPVDTGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 216 l~~L~~L~l~~n~-~~~~~~~~l~~-~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~ 277 (443)
+++|+.++++++. +++.....++. +++|++|.+.++. +++..-..+...++.|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3444455554444 33222222222 4455555544443 3322223333344455555555443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.001 Score=58.03 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc--cceeccCccccCCCCCcEEeccccccC
Q 047097 121 QDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN--YLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 121 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
+..|+.+++.+..++ .-..+..+++|++|.++.| .+.+.++.-...+++|+++++++|++.
T Consensus 42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444444444333 1122333445555555555 222222222223344444444444443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.00021 Score=62.65 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccC--chhccCCCCCC
Q 047097 343 CSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTI--PPEIGELKNLQ 420 (443)
Q Consensus 343 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~ 420 (443)
+.+.+.|+..+|.+.+ ..++.-++.|+.|.||-|.|+.. ..+..|++|++|+|+.|.|. .+ ..++.++|+|+
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 3456677777777762 23444457788888888887743 34778888888888888777 33 23567788888
Q ss_pred eeecccCcCccccCc
Q 047097 421 LLNLGGNFLQGSIPS 435 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~ 435 (443)
.|+|..|+-.|.-+.
T Consensus 92 ~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQ 106 (388)
T ss_pred hHhhccCCcccccch
Confidence 888888888776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.00011 Score=64.40 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC-CccccCCCCCCEE
Q 047097 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSWL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 319 (443)
.+.+.|+.-|+.+. .| .+...++.|+.|.|+-|.++. ...+..|++|++|+|..|.|.+.. -..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556666666665 23 233367777888888877763 233667888888888888776422 1235678888888
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEE
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLY 350 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 350 (443)
.|..|...+..+.... ...+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR-~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYR-RKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHH-HHHHHHcccchhcc
Confidence 8888877665543332 24566777887776
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.59 E-value=0.00043 Score=68.89 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=18.5
Q ss_pred hhhcccCCCeeccccccccccC-chhccCCCCC
Q 047097 388 EIRKLVSLNWLTIDRNQLTGTI-PPEIGELKNL 419 (443)
Q Consensus 388 ~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L 419 (443)
.+..++.++.+.+..+...... -..+..++.|
T Consensus 357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4567777777777777644222 2344455555
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.58 E-value=0.00075 Score=35.10 Aligned_cols=20 Identities=60% Similarity=0.866 Sum_probs=12.2
Q ss_pred CCeeecccCcCccccCccccC
Q 047097 419 LQLLNLGGNFLQGSIPSSLGN 439 (443)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~ 439 (443)
|++||+++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 56655554
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.12 E-value=4.4e-05 Score=74.57 Aligned_cols=182 Identities=21% Similarity=0.186 Sum_probs=105.2
Q ss_pred CCCcEEecccccceeccC----ccccCCCCCcEEeccccccCCCCCccc----cCC-CCCCEEEccCCcCcccc-----c
Q 047097 146 SNLIELFVDTNYLVGEIP----AAIGGLFKLERLFIFHNHITGQLPASI----GNL-SSLLAFDVRENILWGRI-----D 211 (443)
Q Consensus 146 ~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~~~~~~-----~ 211 (443)
..+.++.+.+|.+..... ..+...+.|+.|++++|.+.+.-...+ ... ..++.|++..|.+.... .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 347888888888764433 345677889999999998874322222 121 34556667666665443 3
Q ss_pred cccCCCcCcEEecccCcCCC----CCChhhh----CCCCCcEEEcccCCCCccC----chhhhcCCCC-ccEEeCCCCcC
Q 047097 212 SLVQLRNLLLLDIAFNHFSG----TIPPPIF----NISSLEVISLSENRFTGSL----PVDTGVNLPN-LRQLSPNGNNF 278 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~----~~~~~l~----~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~-L~~L~l~~n~l 278 (443)
.+.....++.++++.|.+.. .++..+. ...++++|++++|.++... ...+. ..++ +.++++..|.+
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~-~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA-SGESLLRELDLASNKL 245 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh-ccchhhHHHHHHhcCc
Confidence 45556777777887777631 1222222 3566777777777665211 11111 2233 55577777766
Q ss_pred ccc----CCccccCC-CCCCEEecccCcccccCCc----cccCCCCCCEEECCCCcCCC
Q 047097 279 TGS----IPVSLSNA-SRLEMIEFSRNQFSGRVSV----DFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 279 ~~~----~~~~l~~~-~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~ 328 (443)
.+. ....+..+ ..+++++++.|++++.... .+..+++++++.++.|.+..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 532 12223334 5667777777777643332 34556677777777776654
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0032 Score=32.67 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=10.8
Q ss_pred CCeeccccccccccCchhcc
Q 047097 395 LNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 395 L~~L~l~~n~~~~~~p~~~~ 414 (443)
|++|++++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666665 5555544
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.32 E-value=0.00031 Score=68.71 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=19.3
Q ss_pred CCEEEccCCcCcccc-----ccccCCCcCcEEecccCcCC
Q 047097 196 LLAFDVRENILWGRI-----DSLVQLRNLLLLDIAFNHFS 230 (443)
Q Consensus 196 L~~L~l~~n~~~~~~-----~~l~~l~~L~~L~l~~n~~~ 230 (443)
+..+.+.+|.+.... ..+.....|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 555666666554333 33445555666666666655
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.71 E-value=0.0016 Score=55.77 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=73.0
Q ss_pred hhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCC
Q 047097 339 LLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418 (443)
Q Consensus 339 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 418 (443)
.+......+.||++.|++. ..-..+..+ +.+..++++.|++. ..|..+.....+..+++..|..+ ..|.++...+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~-t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSIL-TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHH-HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3445566777777777665 333344443 56778888988887 78888888888889999888888 88999999999
Q ss_pred CCeeecccCcCccccCccccCC
Q 047097 419 LQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 419 L~~L~l~~n~l~~~~p~~l~~l 440 (443)
++.+++.+|++...+-...+.|
T Consensus 113 ~k~~e~k~~~~~~~~~~~v~~c 134 (326)
T KOG0473|consen 113 PKKNEQKKTEFFRKLFGFVWSC 134 (326)
T ss_pred cchhhhccCcchHHHHhHhhhh
Confidence 9999999998875544444444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.24 E-value=0.028 Score=26.99 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=6.0
Q ss_pred CCCeeecccCcCc
Q 047097 418 NLQLLNLGGNFLQ 430 (443)
Q Consensus 418 ~L~~L~l~~n~l~ 430 (443)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=0.012 Score=49.41 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=22.0
Q ss_pred ccCCCEEeCcCC-cCcccCchhhhcccCCCeecccc
Q 047097 368 SSTIKQIAMGRN-RISGTIPPEIRKLVSLNWLTIDR 402 (443)
Q Consensus 368 ~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~ 402 (443)
.++|+.|++++| .||+..-.++..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 355666666655 36655556666777777776654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.55 E-value=0.019 Score=30.40 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=9.6
Q ss_pred CCCCeeecccCcCccccCcc
Q 047097 417 KNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|+.|+|++|+|++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45556666666655544433
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.81 E-value=0.11 Score=27.40 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.3
Q ss_pred CCCCEEEccCCcccc
Q 047097 344 SKLERLYFNRNRFEG 358 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~ 358 (443)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.50 E-value=0.004 Score=53.43 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=46.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.||++.|.+.. .-..|.-++.+..|+++.|.+. .+|..++....++.+++..|..+ ..|.++...++++++++
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 566666666665542 2233445555666666666654 45555555555666666555555 55666666666666655
Q ss_pred ccccc
Q 047097 154 DTNYL 158 (443)
Q Consensus 154 ~~n~~ 158 (443)
-.+.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 55554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.36 E-value=0.4 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=9.9
Q ss_pred CCCCEEEccCCcccccCchh
Q 047097 344 SKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~~ 363 (443)
++|++|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.36 E-value=0.4 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=9.9
Q ss_pred CCCCEEEccCCcccccCchh
Q 047097 344 SKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~~ 363 (443)
++|++|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.95 E-value=0.42 Score=25.67 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=12.2
Q ss_pred CCCcEEEcccCCCCccCchhhh
Q 047097 241 SSLEVISLSENRFTGSLPVDTG 262 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~ 262 (443)
++|++|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.95 E-value=0.42 Score=25.67 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=12.2
Q ss_pred CCCcEEEcccCCCCccCchhhh
Q 047097 241 SSLEVISLSENRFTGSLPVDTG 262 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~ 262 (443)
++|++|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=0.2 Score=42.41 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=37.5
Q ss_pred CCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC-cccccCchhHHhhcc
Q 047097 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN-RFEGELPHSVANLSS 369 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~ 369 (443)
.++.++-++..|.......+..++.++.|.+..+.--+ ++.+-..-+..++|+.|+|++| +|++..-.++..+ +
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d----D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l-k 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD----DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL-K 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh----hHHHHHhcccccchheeeccCCCeechhHHHHHHHh-h
Confidence 34555555555554444444455555555554432211 1111111113356666666665 4554444444443 5
Q ss_pred CCCEEeCcC
Q 047097 370 TIKQIAMGR 378 (443)
Q Consensus 370 ~L~~L~l~~ 378 (443)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 555555443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.48 E-value=1.4 Score=23.72 Aligned_cols=17 Identities=47% Similarity=0.696 Sum_probs=8.2
Q ss_pred CCCeeccccccccccCch
Q 047097 394 SLNWLTIDRNQLTGTIPP 411 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~ 411 (443)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3445555555554 4443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.22 E-value=2.1 Score=23.10 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=11.8
Q ss_pred CCCCCeeecccCcCc
Q 047097 416 LKNLQLLNLGGNFLQ 430 (443)
Q Consensus 416 l~~L~~L~l~~n~l~ 430 (443)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 457888888888886
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.99 E-value=2.9 Score=22.95 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=7.9
Q ss_pred CCCEEEccCCcccc
Q 047097 345 KLERLYFNRNRFEG 358 (443)
Q Consensus 345 ~L~~L~Ls~n~l~~ 358 (443)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45566666665553
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.87 E-value=57 Score=31.89 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=33.4
Q ss_pred CCCEEEccCCcccccCchhHHhh--ccCCCEEeCcCCcCcc----cCchhhhcccCCCeecccccccc
Q 047097 345 KLERLYFNRNRFEGELPHSVANL--SSTIKQIAMGRNRISG----TIPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 345 ~L~~L~Ls~n~l~~~~p~~~~~~--~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
-+..+.++.|++....-..+... .+.++.|++++|.... .+|..+..-.+++.+..+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 35666777776663222222211 2457777777775543 24445555556666666665444
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.55 E-value=34 Score=33.33 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=21.2
Q ss_pred CCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 316 LSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
+..+.++.+.+..... .+...+..-+.+..|++++|...
T Consensus 415 l~el~ls~~~lka~l~---s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLE---SAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHH---HHHHhhccCcccccccccCCCcc
Confidence 4555555555432211 22234555667777888777654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.84 E-value=7.3 Score=38.46 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=43.6
Q ss_pred cCCCCCCEEEccCCccccc-CchhHHhhccCCCEEeCcCCcCcccCchhhhc--ccCCCeeccccccccc
Q 047097 341 TNCSKLERLYFNRNRFEGE-LPHSVANLSSTIKQIAMGRNRISGTIPPEIRK--LVSLNWLTIDRNQLTG 407 (443)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~~~~ 407 (443)
.+.+.+..++|++|++... .-..+....++|+.|+|++|...-....++.+ ...|++|-+.||.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3557888999999988721 11234444588999999999322122223332 3457899999998774
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.72 E-value=6.5 Score=38.78 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCCcEEEcccCCCCccCc--hhhhcCCCCccEEeCCCC--cCcccCCcccc--CCCCCCEEecccCccc
Q 047097 240 ISSLEVISLSENRFTGSLP--VDTGVNLPNLRQLSPNGN--NFTGSIPVSLS--NASRLEMIEFSRNQFS 303 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~l~~n--~l~~~~~~~l~--~~~~L~~L~l~~n~l~ 303 (443)
.+.+..+.+++|++. .+. ..+....|+|+.|+|++| .+. ...++. +...|++|-+.||++.
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 455666667777654 221 123335566777777776 222 111111 2234666666666654
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.45 E-value=9.4 Score=20.32 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.1
Q ss_pred CCCCCeeecccCc-Ccc
Q 047097 416 LKNLQLLNLGGNF-LQG 431 (443)
Q Consensus 416 l~~L~~L~l~~n~-l~~ 431 (443)
+++|+.|+|++|+ +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4678999999985 554
Done!