Query 047097
Match_columns 443
No_of_seqs 347 out of 4395
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.3E-54 2.5E-58 446.7 32.5 403 28-443 7-468 (768)
2 4eco_A Uncharacterized protein 100.0 1.8E-52 6E-57 426.9 23.5 396 31-441 28-566 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 9.4E-50 3.2E-54 413.9 25.6 395 29-437 265-825 (876)
4 3rgz_A Protein brassinosteroid 100.0 2.1E-48 7.2E-53 405.6 30.5 359 75-435 295-722 (768)
5 3t6q_A CD180 antigen; protein- 100.0 3E-42 1E-46 351.1 34.0 364 74-443 57-526 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.1E-42 7.1E-47 352.2 32.7 362 74-442 33-477 (606)
7 3v47_A TOLL-like receptor 5B a 100.0 1.4E-42 4.9E-47 341.2 29.2 355 74-435 30-413 (455)
8 4eco_A Uncharacterized protein 100.0 3.8E-43 1.3E-47 358.1 23.2 345 86-438 195-586 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 9.5E-42 3.2E-46 347.4 33.1 355 74-440 32-543 (606)
10 1ogq_A PGIP-2, polygalacturona 100.0 9.5E-43 3.2E-47 324.7 20.0 292 29-325 2-302 (313)
11 3vq2_A TLR4, TOLL-like recepto 100.0 8.8E-41 3E-45 340.2 30.6 351 74-434 56-562 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 4E-41 1.4E-45 340.3 27.0 359 74-442 28-519 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-41 7.5E-46 340.7 24.6 350 74-441 26-497 (549)
14 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-40 1.1E-44 340.5 33.6 366 74-440 25-503 (680)
15 4ecn_A Leucine-rich repeat pro 100.0 5.4E-41 1.8E-45 348.4 24.4 330 90-437 440-847 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 4E-40 1.4E-44 329.2 26.8 343 74-434 21-485 (520)
17 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-40 1.1E-44 347.3 27.0 366 62-437 14-524 (844)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-39 8.2E-44 326.4 28.0 342 74-434 52-514 (562)
19 2z63_A TOLL-like receptor 4, v 100.0 1.9E-39 6.4E-44 328.1 26.8 351 74-435 52-536 (570)
20 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-39 2.7E-43 330.2 31.0 358 74-432 222-624 (680)
21 3v47_A TOLL-like receptor 5B a 100.0 3.6E-39 1.2E-43 316.9 26.5 338 98-443 30-397 (455)
22 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-38 5.4E-43 319.8 26.1 343 74-434 50-514 (549)
23 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-38 5.7E-43 334.3 27.1 364 74-441 48-550 (844)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-36 5.1E-41 310.6 33.9 359 74-440 52-565 (635)
25 2id5_A Lingo-1, leucine rich r 100.0 5.9E-37 2E-41 302.9 27.9 347 78-436 15-362 (477)
26 3o6n_A APL1; leucine-rich repe 100.0 4.5E-37 1.5E-41 295.8 25.5 308 75-407 46-353 (390)
27 2id5_A Lingo-1, leucine rich r 100.0 1.2E-36 4E-41 300.7 28.9 303 74-384 32-335 (477)
28 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-37 1.8E-41 306.7 26.4 349 77-443 3-470 (520)
29 1o6v_A Internalin A; bacterial 100.0 3.3E-36 1.1E-40 296.4 31.6 322 74-431 68-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 1.1E-35 3.7E-40 292.7 33.1 332 74-443 46-377 (466)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-36 8.1E-41 304.5 28.5 350 76-443 33-499 (562)
32 3oja_B Anopheles plasmodium-re 100.0 3.2E-36 1.1E-40 305.3 26.1 333 51-408 8-360 (597)
33 4fmz_A Internalin; leucine ric 100.0 4.2E-35 1.4E-39 277.6 29.2 305 96-430 42-346 (347)
34 3o6n_A APL1; leucine-rich repe 100.0 5E-35 1.7E-39 281.5 27.5 352 52-434 3-356 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-34 3.8E-39 283.6 27.8 331 74-438 42-395 (457)
36 3oja_B Anopheles plasmodium-re 100.0 3.3E-34 1.1E-38 290.5 27.6 313 96-434 49-362 (597)
37 4fmz_A Internalin; leucine ric 100.0 1.9E-33 6.7E-38 266.1 30.8 303 74-406 44-346 (347)
38 3bz5_A Internalin-J, INLJ; leu 100.0 8.2E-34 2.8E-38 277.5 26.7 304 91-431 35-353 (457)
39 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-33 1.1E-37 285.9 30.3 352 74-432 76-582 (635)
40 1jl5_A Outer protein YOPM; leu 100.0 5.6E-34 1.9E-38 278.4 22.6 335 74-440 11-421 (454)
41 1jl5_A Outer protein YOPM; leu 100.0 5.9E-33 2E-37 271.1 29.7 314 74-440 91-439 (454)
42 4fcg_A Uncharacterized protein 100.0 9.1E-35 3.1E-39 272.4 15.6 270 28-326 22-313 (328)
43 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-36 8.9E-41 297.1 -1.2 353 75-431 4-412 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-32 8.1E-37 256.9 25.4 287 99-428 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 5.7E-32 2E-36 254.1 27.7 288 99-428 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-32 1.3E-36 255.6 25.5 293 75-404 34-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1.2E-31 4.3E-36 251.8 28.4 271 76-357 33-306 (330)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.8E-37 256.6 19.1 248 123-428 51-302 (313)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-34 6.3E-39 283.9 1.1 361 74-436 28-446 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 2.4E-30 8.3E-35 245.3 18.7 286 55-361 23-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 2.8E-29 9.7E-34 233.2 21.6 263 98-391 28-296 (306)
52 2z66_A Variable lymphocyte rec 100.0 2.1E-29 7.2E-34 234.1 20.6 281 101-415 10-296 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 8.5E-30 2.9E-34 241.6 15.3 282 120-434 29-318 (353)
54 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-28 7.3E-33 224.8 23.7 267 101-403 14-284 (285)
55 4fcg_A Uncharacterized protein 100.0 1.1E-28 3.8E-33 231.0 21.1 236 96-357 79-314 (328)
56 3g06_A SSPH2 (leucine-rich rep 100.0 1.4E-27 4.8E-32 240.2 26.3 268 98-416 40-307 (622)
57 3zyi_A Leucine-rich repeat-con 100.0 2.1E-27 7E-32 232.7 26.4 245 77-327 57-303 (452)
58 3g06_A SSPH2 (leucine-rich rep 100.0 4.7E-28 1.6E-32 243.7 21.7 290 52-394 12-309 (622)
59 3zyj_A Leucine-rich repeat-con 100.0 4.1E-27 1.4E-31 229.8 26.0 245 77-327 46-292 (440)
60 3ogk_B Coronatine-insensitive 100.0 5.9E-30 2E-34 259.7 4.8 339 96-437 162-533 (592)
61 3zyi_A Leucine-rich repeat-con 100.0 3.8E-27 1.3E-31 230.8 24.3 246 148-430 56-303 (452)
62 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-27 1.1E-31 217.0 21.8 268 125-427 14-284 (285)
63 3zyj_A Leucine-rich repeat-con 100.0 4.5E-27 1.6E-31 229.5 23.5 246 148-406 45-292 (440)
64 1wwl_A Monocyte differentiatio 100.0 5.7E-30 2E-34 238.3 2.8 266 52-327 21-309 (312)
65 3o53_A Protein LRIM1, AGAP0063 100.0 3.5E-29 1.2E-33 233.6 7.1 255 126-425 14-270 (317)
66 1wwl_A Monocyte differentiatio 99.9 2.8E-29 9.7E-34 233.7 3.0 208 215-432 93-311 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 4E-28 1.4E-32 226.4 7.5 218 74-327 10-227 (317)
68 2o6q_A Variable lymphocyte rec 99.9 1.3E-25 4.5E-30 204.4 21.2 215 59-278 2-217 (270)
69 3oja_A Leucine-rich immune mol 99.9 4E-27 1.4E-31 232.1 10.6 234 147-425 35-270 (487)
70 3ogk_B Coronatine-insensitive 99.9 2.5E-28 8.6E-33 247.7 1.3 345 74-425 164-546 (592)
71 2p1m_B Transport inhibitor res 99.9 8.5E-29 2.9E-33 251.2 -3.6 359 74-436 105-525 (594)
72 3oja_A Leucine-rich immune mol 99.9 3.3E-26 1.1E-30 225.5 11.8 219 96-357 32-250 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.8E-24 6.2E-29 197.6 20.6 207 98-328 28-238 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 2.5E-24 8.6E-29 196.7 21.2 208 218-434 29-241 (276)
75 2p1m_B Transport inhibitor res 99.9 3.5E-27 1.2E-31 239.4 -2.1 354 74-435 66-499 (594)
76 3rfs_A Internalin B, repeat mo 99.9 2.5E-24 8.4E-29 196.2 16.7 224 174-417 23-246 (272)
77 2o6q_A Variable lymphocyte rec 99.9 8E-23 2.7E-27 186.0 24.1 200 100-326 18-217 (270)
78 3goz_A Leucine-rich repeat-con 99.9 3.3E-25 1.1E-29 210.6 7.2 261 127-408 3-299 (362)
79 3rfs_A Internalin B, repeat mo 99.9 2E-23 7E-28 190.1 17.8 210 166-393 37-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 8.6E-23 2.9E-27 187.5 22.0 200 94-301 6-206 (290)
81 2ast_B S-phase kinase-associat 99.9 6.3E-25 2.2E-29 206.6 6.6 254 148-438 49-314 (336)
82 4glp_A Monocyte differentiatio 99.9 2.6E-24 8.8E-29 200.0 10.7 229 195-432 65-309 (310)
83 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 5.7E-27 185.5 21.3 203 117-326 5-207 (290)
84 2ca6_A RAN GTPase-activating p 99.9 4.9E-25 1.7E-29 211.4 4.4 245 161-407 23-317 (386)
85 3m19_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 182.9 17.8 190 60-255 3-193 (251)
86 3goz_A Leucine-rich repeat-con 99.9 1.7E-24 5.9E-29 205.6 5.9 269 79-366 3-306 (362)
87 2ast_B S-phase kinase-associat 99.9 4.1E-24 1.4E-28 201.0 8.1 255 100-390 49-314 (336)
88 4glp_A Monocyte differentiatio 99.9 1.3E-23 4.5E-28 195.2 10.1 225 97-328 63-308 (310)
89 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4.1E-29 208.7 3.0 267 113-401 23-338 (386)
90 2xwt_C Thyrotropin receptor; s 99.9 3.1E-22 1.1E-26 178.7 16.4 200 98-324 31-236 (239)
91 2xwt_C Thyrotropin receptor; s 99.9 3.1E-22 1.1E-26 178.7 15.1 196 74-276 31-236 (239)
92 3m19_A Variable lymphocyte rec 99.9 9.7E-22 3.3E-26 176.8 18.2 179 218-407 15-193 (251)
93 1h6u_A Internalin H; cell adhe 99.9 2.4E-21 8.3E-26 179.5 17.1 192 96-303 39-230 (308)
94 1h6u_A Internalin H; cell adhe 99.9 3.1E-21 1.1E-25 178.8 17.0 205 104-326 25-229 (308)
95 2o6s_A Variable lymphocyte rec 99.9 7.8E-21 2.7E-25 165.8 15.0 195 220-436 10-204 (208)
96 3cvr_A Invasion plasmid antige 99.8 6.9E-21 2.3E-25 189.3 15.6 187 195-416 60-253 (571)
97 3cvr_A Invasion plasmid antige 99.8 4.9E-21 1.7E-25 190.4 14.4 204 54-287 35-251 (571)
98 2o6s_A Variable lymphocyte rec 99.8 2.3E-20 7.8E-25 162.8 16.7 179 198-393 11-189 (208)
99 4ay9_X Follicle-stimulating ho 99.8 4.5E-20 1.5E-24 174.3 18.9 237 80-324 15-256 (350)
100 4ay9_X Follicle-stimulating ho 99.8 4.2E-20 1.4E-24 174.5 15.6 235 62-301 9-257 (350)
101 1h6t_A Internalin B; cell adhe 99.8 4.6E-19 1.6E-23 162.7 14.2 174 212-407 41-214 (291)
102 3e6j_A Variable lymphocyte rec 99.8 9.6E-19 3.3E-23 154.7 15.2 164 53-232 10-174 (229)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-18 3.5E-23 153.5 14.8 153 244-407 14-167 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.1E-23 153.1 14.6 152 244-406 14-165 (220)
105 2xot_A Amphoterin-induced prot 99.8 7.8E-19 2.7E-23 166.4 13.6 176 220-406 21-202 (361)
106 3e6j_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 151.0 15.9 155 242-408 20-174 (229)
107 1h6t_A Internalin B; cell adhe 99.8 4E-18 1.4E-22 156.4 15.9 172 95-304 43-214 (291)
108 1m9s_A Internalin B; cell inva 99.8 7.4E-19 2.5E-23 176.6 11.8 187 199-408 26-212 (605)
109 1m9s_A Internalin B; cell inva 99.8 3.7E-18 1.3E-22 171.5 16.8 168 74-254 43-210 (605)
110 4b8c_D Glucose-repressible alc 99.8 6.9E-20 2.4E-24 188.6 3.6 260 30-303 129-404 (727)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-18 1.5E-22 149.4 14.5 155 220-384 14-168 (220)
112 2v9t_B SLIT homolog 2 protein 99.8 5.5E-18 1.9E-22 148.8 14.9 153 220-383 14-166 (220)
113 2xot_A Amphoterin-induced prot 99.8 5.7E-18 2E-22 160.5 15.4 177 197-383 21-203 (361)
114 4ezg_A Putative uncharacterize 99.8 2.9E-18 9.9E-23 148.0 12.1 154 238-431 41-195 (197)
115 4ezg_A Putative uncharacterize 99.7 6.2E-18 2.1E-22 145.9 12.1 151 96-253 42-193 (197)
116 1dce_A Protein (RAB geranylger 99.7 1.6E-20 5.6E-25 187.5 -7.7 207 119-351 346-567 (567)
117 1xeu_A Internalin C; cellular 99.7 7.5E-18 2.6E-22 152.2 10.4 171 215-408 17-187 (263)
118 4b8c_D Glucose-repressible alc 99.7 7.4E-18 2.5E-22 173.5 7.4 192 222-431 206-405 (727)
119 1xeu_A Internalin C; cellular 99.7 5.7E-17 1.9E-21 146.4 12.2 163 77-253 22-184 (263)
120 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.3E-24 179.4 -4.2 205 143-376 346-567 (567)
121 3sb4_A Hypothetical leucine ri 99.7 6.5E-18 2.2E-22 158.0 5.4 218 169-423 100-327 (329)
122 3sb4_A Hypothetical leucine ri 99.7 1.5E-16 5.1E-21 148.8 12.4 281 74-375 25-327 (329)
123 1w8a_A SLIT protein; signaling 99.7 3.5E-16 1.2E-20 134.2 13.1 133 220-361 11-143 (192)
124 2ell_A Acidic leucine-rich nuc 99.7 6.1E-16 2.1E-20 129.8 11.6 136 290-435 24-164 (168)
125 2ell_A Acidic leucine-rich nuc 99.7 5.6E-16 1.9E-20 130.0 11.2 131 98-254 24-160 (168)
126 1w8a_A SLIT protein; signaling 99.6 4.6E-16 1.6E-20 133.5 10.6 131 77-210 11-142 (192)
127 4fs7_A Uncharacterized protein 99.6 1.8E-14 6.3E-19 138.0 22.8 332 86-443 59-390 (394)
128 2je0_A Acidic leucine-rich nuc 99.6 8.1E-16 2.8E-20 126.3 11.4 128 290-426 17-149 (149)
129 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.9E-20 124.7 9.2 84 98-183 17-101 (149)
130 4fdw_A Leucine rich hypothetic 99.6 9.6E-14 3.3E-18 132.6 22.3 268 95-382 110-383 (401)
131 4fdw_A Leucine rich hypothetic 99.6 8.1E-14 2.8E-18 133.1 21.4 266 120-406 111-383 (401)
132 4fs7_A Uncharacterized protein 99.6 1.9E-13 6.6E-18 130.9 22.4 323 74-422 71-393 (394)
133 2wfh_A SLIT homolog 2 protein 99.6 2.4E-14 8.3E-19 122.7 13.8 126 78-207 14-139 (193)
134 2wfh_A SLIT homolog 2 protein 99.6 3.3E-14 1.1E-18 121.8 14.2 127 220-357 13-139 (193)
135 2o6r_A Variable lymphocyte rec 99.6 4.5E-14 1.6E-18 119.3 14.3 132 220-361 10-141 (177)
136 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-14 3.7E-19 123.1 9.9 131 264-406 17-153 (176)
137 2o6r_A Variable lymphocyte rec 99.6 8.9E-14 3.1E-18 117.5 14.9 128 79-209 12-139 (177)
138 1a9n_A U2A', U2A'; complex (nu 99.5 3.1E-14 1.1E-18 120.3 11.4 130 287-429 16-152 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 2.8E-16 9.6E-21 135.6 -3.4 152 266-431 18-186 (198)
140 1ds9_A Outer arm dynein; leuci 99.5 1.2E-15 4E-20 131.7 -2.6 138 286-435 14-158 (198)
141 4gt6_A Cell surface protein; l 99.4 3.5E-11 1.2E-15 115.1 24.2 320 89-429 54-390 (394)
142 3un9_A NLR family member X1; l 99.4 2.6E-14 9.1E-19 135.2 -0.2 39 241-279 101-139 (372)
143 3g39_A Variable lymphocyte rec 99.4 3E-12 1E-16 107.2 12.3 104 77-183 12-115 (170)
144 3g39_A Variable lymphocyte rec 99.4 2.6E-12 8.8E-17 107.6 11.9 107 243-359 11-117 (170)
145 3un9_A NLR family member X1; l 99.4 2.2E-14 7.4E-19 135.8 -1.3 190 240-432 71-285 (372)
146 2r9u_A Variable lymphocyte rec 99.4 5.1E-12 1.7E-16 106.2 12.8 104 244-357 15-118 (174)
147 2r9u_A Variable lymphocyte rec 99.4 5.3E-12 1.8E-16 106.1 12.4 104 77-183 15-118 (174)
148 4gt6_A Cell surface protein; l 99.3 2E-10 6.9E-15 109.8 23.1 308 76-405 66-390 (394)
149 2ra8_A Uncharacterized protein 99.2 4.5E-11 1.5E-15 112.1 9.4 159 264-428 170-341 (362)
150 4h09_A Hypothetical leucine ri 99.1 1.2E-08 4E-13 97.0 24.2 146 262-419 213-358 (379)
151 2ifg_A High affinity nerve gro 99.1 2.9E-10 1E-14 106.8 12.3 102 222-327 13-116 (347)
152 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.7E-15 107.2 11.4 101 80-183 14-116 (347)
153 4h09_A Hypothetical leucine ri 99.1 1.8E-08 6.3E-13 95.6 23.3 315 94-441 42-356 (379)
154 2ra8_A Uncharacterized protein 99.0 4.3E-10 1.5E-14 105.5 5.3 146 282-436 164-326 (362)
155 1io0_A Tropomodulin; LRR prote 98.8 4.7E-09 1.6E-13 88.9 4.3 93 338-430 59-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2.1E-08 7.2E-13 84.8 3.6 94 311-406 62-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.2E-07 4.2E-12 84.2 2.2 80 341-423 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 1.2E-06 4E-11 77.9 7.1 82 311-399 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 3E-07 1E-11 75.8 2.4 85 314-404 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 5.3E-07 1.8E-11 74.4 3.7 84 290-380 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 2E-05 6.8E-10 66.2 3.9 70 287-358 38-112 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 5.9E-05 2E-09 63.3 4.2 88 264-353 39-135 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0021 7.3E-08 50.2 5.0 57 347-406 11-68 (130)
164 3rfe_A Platelet glycoprotein I 95.7 0.024 8.1E-07 44.1 6.6 35 292-326 33-67 (130)
165 2lz0_A Uncharacterized protein 53.4 32 0.0011 24.7 5.8 45 86-131 8-52 (100)
166 2lz0_A Uncharacterized protein 52.5 22 0.00076 25.5 4.8 45 110-155 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-54 Score=446.73 Aligned_cols=403 Identities=30% Similarity=0.399 Sum_probs=304.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCcee---cC-------------
Q 047097 28 ANSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGT---LS------------- 91 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~---~~------------- 91 (443)
+.+.++|+.||++||+.+.||. .+++|+.+.+||.|.||.|+ .++|+.|+++++.+.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3446889999999999999988 89999988899999999998 38999999999988876 33
Q ss_pred ----------ccccCCCCCCEEECCCCcCcccCCc--ccCCCCCCCEEEccCCcCCCCCCccc-cCCCCCcEEecccccc
Q 047097 92 ----------PYVGNLSFLRYINLANNGFLGEIPP--QIGRQDMLEGLVLSNNSFSGTIPTNL-SRCSNLIELFVDTNYL 158 (443)
Q Consensus 92 ----------~~~~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~ 158 (443)
..+..+++|++|++++|.+++.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 4677888888888888888887777 88888888888888888887777765 7888888888888888
Q ss_pred eeccCcc---ccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCCh
Q 047097 159 VGEIPAA---IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPP 235 (443)
Q Consensus 159 ~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
++..|.. +.++++|++|++++|.+++..|. .++++|++|++++|.+.+..+.+..+++|++|++++|.+++.+|.
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 8777665 67778888888888877765543 677888888888888777665577888888888888888877777
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCC-CCCCEEecccCcccccCCccccCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..++.++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 8888888888888888877666653 56777777777777776677666553 7777777777777777777777777
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc--------------------------
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS-------------------------- 368 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-------------------------- 368 (443)
+|++|++++|.+.+..+. ..+..+++|++|++++|.+++.+|..+....
T Consensus 319 ~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp TCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 777777777777655441 2356666677777777766666666555542
Q ss_pred cCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 369 STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
++|+.|++++|.+++.+|..+.++++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.++++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 345555666666666666667777777777777777777777777777777777777777777777766665543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-52 Score=426.93 Aligned_cols=396 Identities=21% Similarity=0.291 Sum_probs=284.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCCC--------CCCCCCCCCCce---eeeeeCCCCCcEEEEEcCCCCCceecCccccCCCC
Q 047097 31 NETDRLALLAIKSQLHDPLGVT--------SSWNNSMNLCQW---TGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSF 99 (443)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~--------~~w~~~~~~c~~---~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~ 99 (443)
...|+.||.+++.++.++.+.. .+|+.+.++|.| .||.|+.. ++|+.|+|+++.+.|.+|+.++++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCcc
Confidence 4578999999999998664432 379999999999 99999876 89999999999999999999999999
Q ss_pred CCEEECCCCcC---------------------------------------------------------------------
Q 047097 100 LRYINLANNGF--------------------------------------------------------------------- 110 (443)
Q Consensus 100 L~~L~L~~n~~--------------------------------------------------------------------- 110 (443)
|++|++++|.+
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 99999998843
Q ss_pred ---------cccCCcccCCCCCCCEEEccCCcCCCC-----------------CCcccc--CCCCCcEEecccccceecc
Q 047097 111 ---------LGEIPPQIGRQDMLEGLVLSNNSFSGT-----------------IPTNLS--RCSNLIELFVDTNYLVGEI 162 (443)
Q Consensus 111 ---------~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~ 162 (443)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 34 788899999999999999999975 899998 9999999999999999999
Q ss_pred CccccCCCCCcEEeccccc-cCC-CCCccccCC------CCCCEEEccCCcCccccc--cccCCCcCcEEecccCcCCCC
Q 047097 163 PAAIGGLFKLERLFIFHNH-ITG-QLPASIGNL------SSLLAFDVRENILWGRID--SLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 163 ~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~--~l~~l~~L~~L~l~~n~~~~~ 232 (443)
|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|.+...+. .+..+++|++|++++|.++|.
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 9999999999999999998 887 788877765 888999998888886656 788888888888888888877
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCC-ccEEeCCCCcCcccCCccccCCC--CCCEEecccCcccccCCcc
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN-LRQLSPNGNNFTGSIPVSLSNAS--RLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~ 309 (443)
+| .+..+++|++|++++|.+. .+|..+. .+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++..|..
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 77 6777777777777777776 6666544 5666 777777777776 5666555443 6666677666666666655
Q ss_pred cc-------CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc-------CCCEEe
Q 047097 310 FS-------RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS-------TIKQIA 375 (443)
Q Consensus 310 ~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~-------~L~~L~ 375 (443)
+. .+++|++|++++|.++.... ..+..+++|++|++++|.++ .+|..++.... +|+.|+
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred hcccccccccCCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence 55 55566666666666654332 23334455555555555555 44443322111 455555
Q ss_pred CcCCcCcccCchhhh--cccCCCeeccccccccccCchhccCCCCCCeeec------ccCcCccccCccccCCC
Q 047097 376 MGRNRISGTIPPEIR--KLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNL------GGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 376 l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l------~~n~l~~~~p~~l~~l~ 441 (443)
+++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+.+++
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 5555554 4444443 45555555555555553 4444444555555554 33444444554444443
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.4e-50 Score=413.89 Aligned_cols=395 Identities=21% Similarity=0.247 Sum_probs=280.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCC-----CC--Cce------------eeeeeCCCCCcEEEEEcCCCCCcee
Q 047097 29 NSNETDRLALLAIKSQLHDPLGVTSSWNNSM-----NL--CQW------------TGVICGRRHQRVTRLDLRNQSIGGT 89 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~c~~~~~~v~~L~l~~~~l~~~ 89 (443)
.+..+|+.||+++|.++.+| +|+.+. ++ |.| .||.|+.. ++|+.|+|+++.+.|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCc
Confidence 34568999999999999877 565433 55 999 99999874 8999999999999999
Q ss_pred cCccccCCCCCCEEEC-CCCcCccc-------------------------------------------------------
Q 047097 90 LSPYVGNLSFLRYINL-ANNGFLGE------------------------------------------------------- 113 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L-~~n~~~~~------------------------------------------------------- 113 (443)
+|+.++++++|++|+| ++|.++|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 77754433
Q ss_pred ---------------------CCcccCCCCCCCEEEccCCcCCC-----------------CCCcccc--CCCCCcEEec
Q 047097 114 ---------------------IPPQIGRQDMLEGLVLSNNSFSG-----------------TIPTNLS--RCSNLIELFV 153 (443)
Q Consensus 114 ---------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l 153 (443)
+|..|+++++|++|++++|.+++ .+|..++ ++++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 77889999999999999999997 3888887 9999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccc-cCC-CCCccccCCC-------CCCEEEccCCcCccccc--cccCCCcCcEE
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNH-ITG-QLPASIGNLS-------SLLAFDVRENILWGRID--SLVQLRNLLLL 222 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~--~l~~l~~L~~L 222 (443)
++|.+.+.+|..|+++++|++|++++|. +++ .+|..+++++ +|+.|++++|.+...+. .+..+++|+.|
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEE
Confidence 9999999999999999999999999998 887 6777665544 88888888888885556 78888888888
Q ss_pred ecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCC-ccEEeCCCCcCcccCCccccCCCC--CCEEeccc
Q 047097 223 DIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPN-LRQLSPNGNNFTGSIPVSLSNASR--LEMIEFSR 299 (443)
Q Consensus 223 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~--L~~L~l~~ 299 (443)
++++|.++ .+| .+..+++|++|++++|.+. .+|..+. .+++ |++|++++|.++ .+|..+..++. |+.|++++
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence 88888887 666 7777888888888888887 7776655 6666 888888888777 66666655433 66666666
Q ss_pred CcccccCCc----------------------------c-ccCCCCCCEEECCCCcCCCcCCCchhhh-hhhcCCCCCCEE
Q 047097 300 NQFSGRVSV----------------------------D-FSRLKNLSWLNMGINNLGTGTANELDFI-NLLTNCSKLERL 349 (443)
Q Consensus 300 n~l~~~~~~----------------------------~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~~~~L~~L 349 (443)
|.+.+.+|. . +..+++|+.|++++|.+........... ..+.++++|+.|
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEE
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEE
Confidence 666554332 1 1234445555555554442221000000 001122256666
Q ss_pred EccCCcccccCchhHH-hhccCCCEEeCcCCcCcccCchhhhcccCCCeecccc------ccccccCchhccCCCCCCee
Q 047097 350 YFNRNRFEGELPHSVA-NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR------NQLTGTIPPEIGELKNLQLL 422 (443)
Q Consensus 350 ~Ls~n~l~~~~p~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~------n~~~~~~p~~~~~l~~L~~L 422 (443)
+|++|+++ .+|..+. ...++|+.|++++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|
T Consensus 734 ~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp ECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 66666655 5555554 112556666666666664 555566666666666644 55555566666666666666
Q ss_pred ecccCcCccccCccc
Q 047097 423 NLGGNFLQGSIPSSL 437 (443)
Q Consensus 423 ~l~~n~l~~~~p~~l 437 (443)
++++|++ +.+|..+
T Consensus 812 ~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKL 825 (876)
T ss_dssp ECCSSCC-CBCCSCC
T ss_pred ECCCCCC-CccCHhh
Confidence 6666666 4555543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-48 Score=405.59 Aligned_cols=359 Identities=30% Similarity=0.505 Sum_probs=265.8
Q ss_pred cEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcc-cCCCCCCCEEEccCCcCCCCCCccccCCC-CCcEEe
Q 047097 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRQDMLEGLVLSNNSFSGTIPTNLSRCS-NLIELF 152 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ 152 (443)
.++.|++++|.+++..|..+.++++|++|++++|.+++.+|.. ++++++|++|++++|.+.+.+|..+.+++ +|++|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 3444444444444444444444555555555555544444433 44555555555555555444555554444 555555
Q ss_pred cccccceeccCccccC--CCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcC
Q 047097 153 VDTNYLVGEIPAAIGG--LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHF 229 (443)
Q Consensus 153 l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~ 229 (443)
+++|.+++.+|..+.. +++|++|++++|.+++.+|..+.++++|+.|++++|.+.+.. ..+..+++|++|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 5555555555555444 566777777777777777777888888888888888777555 6777888888888888888
Q ss_pred CCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcc
Q 047097 230 SGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 230 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+.+|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 888888888888888888888888877777665 7888888888888888888888888888888888888888888888
Q ss_pred ccCCCCCCEEECCCCcCCCcCCCchhh-----------------------------------------------------
Q 047097 310 FSRLKNLSWLNMGINNLGTGTANELDF----------------------------------------------------- 336 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------- 336 (443)
+..+++|++|++++|.+.+..|..+.-
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 888888888888888888766543210
Q ss_pred -----------hhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccc
Q 047097 337 -----------INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 337 -----------~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
+..+..+++|++|++++|+++|.+|..+..+ +.|+.|++++|+++|.+|..++.+++|+.|+|++|++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 1123446788899999999998899888886 7899999999999989999999999999999999999
Q ss_pred cccCchhccCCCCCCeeecccCcCccccCc
Q 047097 406 TGTIPPEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
+|.+|+.+..+++|+.|++++|+++|.+|+
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999999999999999999886
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-42 Score=351.05 Aligned_cols=364 Identities=20% Similarity=0.153 Sum_probs=215.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 45666666666666655666666666666666666666555555666666666666666555443444555555555555
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCcc--------------------------------------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPAS-------------------------------------------- 189 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------- 189 (443)
++|.+++..++.+..+++|++|++++|.+++..|..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 555544322222223444444444444333222222
Q ss_pred ---------------------------------------------------------ccCCCCCCEEEccCCcCcccccc
Q 047097 190 ---------------------------------------------------------IGNLSSLLAFDVRENILWGRIDS 212 (443)
Q Consensus 190 ---------------------------------------------------------l~~l~~L~~L~l~~n~~~~~~~~ 212 (443)
++.+++|++|++++|.+...+..
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~ 296 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh
Confidence 33445555555555555544444
Q ss_pred ccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccC--CccccCCC
Q 047097 213 LVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI--PVSLSNAS 290 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~~~ 290 (443)
+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++.. +..+..++
T Consensus 297 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence 5555555555555555554444455555555555555555555555544445666666666666666443 55566667
Q ss_pred CCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccC
Q 047097 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 370 (443)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. ..+..+++|++|++++|.+++..|..+..+ ++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~ 450 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-----SPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PA 450 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC-----CTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TT
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc-----hhhhCcccCCEEECCCCccCCcCHHHHhCC-CC
Confidence 777777777776666666666677777777777766554331 235666777777777777765555555554 66
Q ss_pred CCEEeCcCCcCccc---CchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 371 IKQIAMGRNRISGT---IPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 371 L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
|+.|++++|.+++. .+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+.++++|
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 77777777777652 22456677777777777777776667777777777777777777777777777666543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-42 Score=352.24 Aligned_cols=362 Identities=20% Similarity=0.196 Sum_probs=260.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.|++++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57999999999999998999999999999999999999888999999999999999999999888999999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCc--EEecccCcCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLL--LLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~--~L~l~~n~~~ 230 (443)
++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. ..+..+++|+ .+++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 999999776788999999999999999999755455556999999999999888775 5666777776 6667666655
Q ss_pred CCCC---------------------------------------------------------------------------h
Q 047097 231 GTIP---------------------------------------------------------------------------P 235 (443)
Q Consensus 231 ~~~~---------------------------------------------------------------------------~ 235 (443)
+..| .
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 4333 2
Q ss_pred hhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCc-cccCCC
Q 047097 236 PIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-DFSRLK 314 (443)
Q Consensus 236 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~ 314 (443)
.+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 2444455555555555554 4544433 455555555555555544444555555555555555555543333 255555
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCch-hhhccc
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP-EIRKLV 393 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~ 393 (443)
+|++|++++|.+.+... .+..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+++..+. .+..++
T Consensus 351 ~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDC----CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TCCEEECCSSCCCEEEE----STTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred cCCEEECCCCccccccC----cchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhCcc
Confidence 66666666655544320 01345667777777777777765555555554 6677777777777765443 367777
Q ss_pred CCCeeccccccccccCchhccCCCCCCeeecccCcCccc---cCccccCCCC
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS---IPSSLGNLTL 442 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~---~p~~l~~l~~ 442 (443)
+|+.|++++|.+++..|..+..+++|+.|++++|++++. .+..+.++++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 777777777777766677777777777777777777662 2244555544
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-42 Score=341.17 Aligned_cols=355 Identities=21% Similarity=0.189 Sum_probs=307.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccC-CcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 152 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999998999999999999999999997655 56799999999999999999988899999999999999
Q ss_pred cccccceeccCcc--ccCCCCCcEEeccccccCCCCCcc-ccCCCCCCEEEccCCcCcccc-ccccCC--CcCcEEeccc
Q 047097 153 VDTNYLVGEIPAA--IGGLFKLERLFIFHNHITGQLPAS-IGNLSSLLAFDVRENILWGRI-DSLVQL--RNLLLLDIAF 226 (443)
Q Consensus 153 l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~-~~l~~l--~~L~~L~l~~ 226 (443)
+++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+.. ..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999999887876 899999999999999998776 555554 7899999999
Q ss_pred CcCCCCCChh--------hhCCCCCcEEEcccCCCCccCchhhhc--CCCCccEEeCCCCcCcccC----------Cccc
Q 047097 227 NHFSGTIPPP--------IFNISSLEVISLSENRFTGSLPVDTGV--NLPNLRQLSPNGNNFTGSI----------PVSL 286 (443)
Q Consensus 227 n~~~~~~~~~--------l~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~----------~~~l 286 (443)
|.+.+..+.. +..+++|++|++++|.+.+..|..+.. ..++++.|++++|...+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9998654433 336689999999999998777765542 2489999999998655321 1112
Q ss_pred c--CCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhH
Q 047097 287 S--NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364 (443)
Q Consensus 287 ~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 364 (443)
. ..++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD------NAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh------hHhcCcccCCEEECCCCccCCcChhHh
Confidence 2 23689999999999999999999999999999999999988776 678899999999999999997767777
Q ss_pred HhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCc
Q 047097 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 365 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
..+ ++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 344 ~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 344 ENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCc-ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 665 8999999999999988899999999999999999999965566778999999999999999999883
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-43 Score=358.12 Aligned_cols=345 Identities=20% Similarity=0.221 Sum_probs=297.0
Q ss_pred CceecCccccCCCCCCEEECCCCcCccc-----------------CCcccC--CCCCCCEEEccCCcCCCCCCccccCCC
Q 047097 86 IGGTLSPYVGNLSFLRYINLANNGFLGE-----------------IPPQIG--RQDMLEGLVLSNNSFSGTIPTNLSRCS 146 (443)
Q Consensus 86 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~ 146 (443)
+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.+++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 334 788899999999999999999986 999999 999999999999999999999999999
Q ss_pred CCcEEeccccc-cee-ccCccccCC------CCCcEEeccccccCCCCCc--cccCCCCCCEEEccCCcCccccccccCC
Q 047097 147 NLIELFVDTNY-LVG-EIPAAIGGL------FKLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQL 216 (443)
Q Consensus 147 ~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~l~~l 216 (443)
+|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|+.|++++|.+.+..+.+..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 99999999998 988 889888876 99999999999999 8898 8999999999999999999544488899
Q ss_pred CcCcEEecccCcCCCCCChhhhCCCC-CcEEEcccCCCCccCchhhhcC--CCCccEEeCCCCcCcccCCcccc------
Q 047097 217 RNLLLLDIAFNHFSGTIPPPIFNISS-LEVISLSENRFTGSLPVDTGVN--LPNLRQLSPNGNNFTGSIPVSLS------ 287 (443)
Q Consensus 217 ~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~------ 287 (443)
++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+. . +++|++|++++|.+++..|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 99999999999998 88888999999 999999999998 8887554 3 34899999999999998888887
Q ss_pred -CCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhh-hhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 288 -NASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI-NLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 288 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
.+++|++|++++|++++..+..+..+++|++|++++|.++.......... ..+..+++|++|++++|.++ .+|..++
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence 78899999999999995544556679999999999999984443111100 01223348999999999999 7888776
Q ss_pred -hhccCCCEEeCcCCcCcccCchhhhcccCCCeecc------ccccccccCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 366 -NLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTI------DRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 366 -~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l------~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
...++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 224889999999999996 8889999999999999 56778889999999999999999999999 68887553
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.5e-42 Score=347.36 Aligned_cols=355 Identities=19% Similarity=0.224 Sum_probs=221.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56888888888888888778888888888888888888777888888888888888888888777888888888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCcccc-ccccCC---------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLVQL--------------- 216 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l--------------- 216 (443)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.. ..+..+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 8888876666778888888888888888875 46888888888888888887665433 111111
Q ss_pred ------------CcCcEEecccCcCC------------------------------------------------------
Q 047097 217 ------------RNLLLLDIAFNHFS------------------------------------------------------ 230 (443)
Q Consensus 217 ------------~~L~~L~l~~n~~~------------------------------------------------------ 230 (443)
.+|+.|++++|.+.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 12233333322211
Q ss_pred --------------------------CCCChhhhCCCCCcEEEcccCCCCccCc--------------------------
Q 047097 231 --------------------------GTIPPPIFNISSLEVISLSENRFTGSLP-------------------------- 258 (443)
Q Consensus 231 --------------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~-------------------------- 258 (443)
..+| .+..+++|++|++++|.+ +.+|
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCC
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccC
Confidence 0111 222333444444444443 1333
Q ss_pred --------------------hhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCC-ccccCCCCCC
Q 047097 259 --------------------VDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLS 317 (443)
Q Consensus 259 --------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 317 (443)
.... .+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|+
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 1111 3334444444444433 233344444555555555555544433 3445555555
Q ss_pred EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc-CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCC
Q 047097 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE-LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLN 396 (443)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 396 (443)
+|++++|.+.+..+ ..+..+++|++|++++|.+++. +|..+..+ ++|+.|++++|++++..|..+..+++|+
T Consensus 428 ~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 428 YLDISYTNTKIDFD------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp EEECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EEECcCCCCCccch------hhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhhcccccCC
Confidence 55555555544443 4455666666666666666653 44444443 6666666666666666666666666677
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
.|++++|++++..|..+..+++|+.|++++|+++ .+|..+.++
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 7777777666666666666666777777777666 455545544
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.5e-43 Score=324.69 Aligned_cols=292 Identities=28% Similarity=0.454 Sum_probs=246.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCc--eeeeeeCCCC--CcEEEEEcCCCCCce--ecCccccCCCCCCE
Q 047097 29 NSNETDRLALLAIKSQLHDPLGVTSSWNNSMNLCQ--WTGVICGRRH--QRVTRLDLRNQSIGG--TLSPYVGNLSFLRY 102 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~~~~--~~v~~L~l~~~~l~~--~~~~~~~~l~~L~~ 102 (443)
.|.++|+.||++||+++.+|. .+.+|..+.+||. |.||.|+... .+|+.|+++++.+++ .+|..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998886 6889988889998 9999998654 789999999999998 89999999999999
Q ss_pred EECCC-CcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccc
Q 047097 103 INLAN-NGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH 181 (443)
Q Consensus 103 L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 181 (443)
|++++ |.+.+.+|..|+++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99998999999999999999999999998999999999999999999999998899999999999999999999
Q ss_pred cCCCCCccccCCC-CCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCch
Q 047097 182 ITGQLPASIGNLS-SLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 182 l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 259 (443)
+++.+|..+.+++ +|++|++++|.+.+.. ..+..++ |++|++++|.+++..|..+..+++|++|++++|.+.+.+|.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 9988999898887 8888888888877544 5666665 88888888888777777777778888888888877755444
Q ss_pred hhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 260 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
+ ..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 240 -~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -V-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -C-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -c-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 2 35677777777777777777777777777777777777777766664 666777777777765
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.8e-41 Score=340.23 Aligned_cols=351 Identities=19% Similarity=0.143 Sum_probs=281.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 67888888888888877888888888888888888888777888888888888888888887666677888888888888
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccC----------------------------------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGN---------------------------------------- 192 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------------------------------------- 192 (443)
++|.+++ .+|..++++++|++|++++|.+++..+..++.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 8888775 45778888888888888887766544332221
Q ss_pred --------------------------------------------------------------------------------
Q 047097 193 -------------------------------------------------------------------------------- 192 (443)
Q Consensus 193 -------------------------------------------------------------------------------- 192 (443)
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence
Q ss_pred ----------CCCCCEEEccCCcCcccc--------------------ccccCCCcCcEEecccCcCCCC--CChhhhCC
Q 047097 193 ----------LSSLLAFDVRENILWGRI--------------------DSLVQLRNLLLLDIAFNHFSGT--IPPPIFNI 240 (443)
Q Consensus 193 ----------l~~L~~L~l~~n~~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~~ 240 (443)
+++|+.|++++|.+...+ ..+..+++|++|++++|.+++. .+..+..+
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred cchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 122233333333221111 1223455666666666666544 37778889
Q ss_pred CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEE
Q 047097 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
++|++|++++|.+. .+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 376 ~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 99999999999987 5664444 89999999999999997777 678999999999999999999999999999999999
Q ss_pred ECCCCcCCCc-CCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCee
Q 047097 320 NMGINNLGTG-TANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~-~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 398 (443)
++++|.+.+. .+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|..++.+++|+.|
T Consensus 454 ~l~~n~l~~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 454 KMAGNSFKDNTLS------NVFANTTNLTFLDLSKCQLEQISWGVFDTL-HRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp ECTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred ECCCCcCCCcchH------HhhccCCCCCEEECCCCcCCccChhhhccc-ccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 9999999873 44 568899999999999999998878777775 899999999999999889999999999999
Q ss_pred ccccccccccCchhccCCC-CCCeeecccCcCccccC
Q 047097 399 TIDRNQLTGTIPPEIGELK-NLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 399 ~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p 434 (443)
++++|+++ .+|..+..++ +|+.|++++|++.+..+
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999 8898899997 59999999999997665
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-41 Score=340.31 Aligned_cols=359 Identities=21% Similarity=0.223 Sum_probs=212.3
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+.+|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45677777777777766667777777777777777777666666777777777777777777555666777777777777
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCcccc-cccc-----------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLV----------------- 214 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~----------------- 214 (443)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|+.|++++|.+.... ..+.
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777664444456777777777777777665 35666777777777777766554432 2222
Q ss_pred --------------------------------------------------------------------------------
Q 047097 215 -------------------------------------------------------------------------------- 214 (443)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (443)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred ------------CCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhh-------------------c
Q 047097 215 ------------QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTG-------------------V 263 (443)
Q Consensus 215 ------------~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-------------------~ 263 (443)
.+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.... .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccc
Confidence 2334444444444444 233333333 4444444444433 2322100 1
Q ss_pred CCCCccEEeCCCCcCcccC--CccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhc
Q 047097 264 NLPNLRQLSPNGNNFTGSI--PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 341 (443)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+. ..+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----SVFL 418 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS-----CTTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch-----hhhh
Confidence 3455666666666655332 44455566666666666666543333 56666666666666666544331 2345
Q ss_pred CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCc-ccCchhhhcccCCCeeccccccccccCchhccCCCCCC
Q 047097 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRIS-GTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQ 420 (443)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 420 (443)
.+++|++|++++|.+.+..|..+..+ ++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 56666666666666665555544443 55666666666665 34555666666666666666666655566666666666
Q ss_pred eeecccCcCccccCccccCCCC
Q 047097 421 LLNLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~~l~~l~~ 442 (443)
.|++++|++++..|..|.++++
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccC
Confidence 6666666666555555555544
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-41 Score=340.66 Aligned_cols=350 Identities=18% Similarity=0.162 Sum_probs=218.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46888999999888888888888999999999999888777788888899999999999888666666888888999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCC-ccccCCCCCCEEEccCCcCcccc-cccc----------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRI-DSLV---------------- 214 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~-~~l~---------------- 214 (443)
++|.+++ ..|..++++++|++|++++|...+.+| ..+.++++|++|++++|.+.+.. ..+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 8888875 345678888888888888887433444 56778888888888888776543 3333
Q ss_pred --------CCCcCcEEecccCcCCCCC--Chh------------------------------------------------
Q 047097 215 --------QLRNLLLLDIAFNHFSGTI--PPP------------------------------------------------ 236 (443)
Q Consensus 215 --------~l~~L~~L~l~~n~~~~~~--~~~------------------------------------------------ 236 (443)
.+++|++|++++|.+++.. +..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 3566777777777665421 000
Q ss_pred ----------------------------------------hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC
Q 047097 237 ----------------------------------------IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 237 ----------------------------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
....++|++|++++|.+. .+|..++..+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 000123444444444443 455544435666777777777
Q ss_pred cCcccCC---ccccCCCCCCEEecccCcccccCC--ccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEc
Q 047097 277 NFTGSIP---VSLSNASRLEMIEFSRNQFSGRVS--VDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351 (443)
Q Consensus 277 ~l~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 351 (443)
.+++.+| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.++.. + ..+..+++|++|++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p------~~~~~~~~L~~L~L 417 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-P------DSCQWPEKMRFLNL 417 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-C------SCCCCCTTCCEEEC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-C------hhhcccccccEEEC
Confidence 6665443 224566666677776666654322 3356666667777766666532 2 23445556666666
Q ss_pred cCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 352 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|.++ .+|..+ +++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++
T Consensus 418 s~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 418 SSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred CCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 666555 333221 123444444444444321 24455555555555554 4444 2344555555555555555
Q ss_pred ccCccccCCC
Q 047097 432 SIPSSLGNLT 441 (443)
Q Consensus 432 ~~p~~l~~l~ 441 (443)
..|..+.+++
T Consensus 488 ~~~~~~~~l~ 497 (549)
T 2z81_A 488 VPDGIFDRLT 497 (549)
T ss_dssp CCTTGGGGCT
T ss_pred cCHHHHhcCc
Confidence 4444444443
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-40 Score=340.49 Aligned_cols=366 Identities=20% Similarity=0.179 Sum_probs=220.5
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 56888999998888877778888888999999888888877888888888888888888888554556888888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccc--cCCCcCcEEecccCcCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSL--VQLRNLLLLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l--~~l~~L~~L~l~~n~~~ 230 (443)
++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+.+.. ..+ ..+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 888888666677888888888888888888777777888888888888888776655 222 23456666666666555
Q ss_pred CCCChh---------------------------------------------------hhCC--CCCcEEEcccCCCCccC
Q 047097 231 GTIPPP---------------------------------------------------IFNI--SSLEVISLSENRFTGSL 257 (443)
Q Consensus 231 ~~~~~~---------------------------------------------------l~~~--~~L~~L~l~~n~~~~~~ 257 (443)
+..|.. +..+ ++|++|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 443332 2222 22555555555555322
Q ss_pred chhhhcCCCCccEEeCCCCcCcccCCcc---------------------------------ccCCCCCCEEecccCcccc
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVS---------------------------------LSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~---------------------------------l~~~~~L~~L~l~~n~l~~ 304 (443)
|.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++
T Consensus 265 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 222 225566666666666555443332 3334445555555555555
Q ss_pred cCCccccCCCCCCEEECCCCcCCCcCCCch----------------------hhhhhhcCCCCCCEEEccCCcccccCch
Q 047097 305 RVSVDFSRLKNLSWLNMGINNLGTGTANEL----------------------DFINLLTNCSKLERLYFNRNRFEGELPH 362 (443)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------~~~~~l~~~~~L~~L~Ls~n~l~~~~p~ 362 (443)
..+..+..+++|++|++++|.+........ -.+..+..+++|++|++++|.+.+.+|.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 445555555555555555543221100000 0013445566666666666666655553
Q ss_pred hHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc--ccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 363 SVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT--GTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 363 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
..+...++|+.|++++|.+++..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..|.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 22222355666666666555433333333333333433333332 2334444444455555555555544444444433
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-41 Score=348.35 Aligned_cols=330 Identities=20% Similarity=0.244 Sum_probs=269.8
Q ss_pred cCccccCCCCCCEEECCCCcCcc-----------------cCCcccC--CCCCCCEEEccCCcCCCCCCccccCCCCCcE
Q 047097 90 LSPYVGNLSFLRYINLANNGFLG-----------------EIPPQIG--RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIE 150 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 150 (443)
+|..+.++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67789999999999999999998 3888888 9999999999999999999999999999999
Q ss_pred Eeccccc-cee-ccCccccCCC-------CCcEEeccccccCCCCCc--cccCCCCCCEEEccCCcCccccccccCCCcC
Q 047097 151 LFVDTNY-LVG-EIPAAIGGLF-------KLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQLRNL 219 (443)
Q Consensus 151 L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L 219 (443)
|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .++++++|+.|++++|.+...+ .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 9999998 887 7787665554 8999999999998 7888 8889999999999999888444 77888888
Q ss_pred cEEecccCcCCCCCChhhhCCCC-CcEEEcccCCCCccCchhhhc------------------------------CCCCc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISS-LEVISLSENRFTGSLPVDTGV------------------------------NLPNL 268 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~------------------------------~~~~L 268 (443)
+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+.. ..++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 88888888887 77777777777 888888888776 66643220 11245
Q ss_pred cEEeCCCCcCcccCCccc-cCCCCCCEEecccCcccccCCccccC--------CCCCCEEECCCCcCCCcCCCchhhhhh
Q 047097 269 RQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSR--------LKNLSWLNMGINNLGTGTANELDFINL 339 (443)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+|..+.. +++|+.|++++|.++. .+ ..
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp------~~ 746 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS------DD 746 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CC------GG
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-ch------HH
Confidence 55566666555 344443 47889999999999998 44543322 2399999999999983 33 44
Q ss_pred hc--CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcC------CcCcccCchhhhcccCCCeeccccccccccCch
Q 047097 340 LT--NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGR------NRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPP 411 (443)
Q Consensus 340 l~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 411 (443)
+. .+++|+.|+|++|++++ +|..+..+ ++|+.|++++ |.+.+.+|..+..+++|+.|+|++|++ +.+|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcC-CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 55 89999999999999996 88888876 8999999976 788889999999999999999999999 59999
Q ss_pred hccCCCCCCeeecccCcCccccCccc
Q 047097 412 EIGELKNLQLLNLGGNFLQGSIPSSL 437 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (443)
.+. ++|+.|+|++|++....+..+
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGGG
T ss_pred hhc--CCCCEEECCCCCCCccChHHc
Confidence 875 699999999999986665544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=329.18 Aligned_cols=343 Identities=20% Similarity=0.216 Sum_probs=265.9
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67999999999999888888999999999999999999888899999999999999999998 56666 8999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCCC--CEEEccCCcC--cccc-ccccC------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQ------------ 215 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~-~~l~~------------ 215 (443)
++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+ .+.. ..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999986 467899999999999999999875 456777788 9999999877 2221 22221
Q ss_pred -----------------------------------------------------------------------CCcCcEEec
Q 047097 216 -----------------------------------------------------------------------LRNLLLLDI 224 (443)
Q Consensus 216 -----------------------------------------------------------------------l~~L~~L~l 224 (443)
.++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 125667777
Q ss_pred ccCcCCCCCChhh-----hCCCCCcEEEcccCCCCccCch-hh------------------------hcCCCCccEEeCC
Q 047097 225 AFNHFSGTIPPPI-----FNISSLEVISLSENRFTGSLPV-DT------------------------GVNLPNLRQLSPN 274 (443)
Q Consensus 225 ~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~~-~~------------------------~~~~~~L~~L~l~ 274 (443)
++|.+++.+|..+ ..+++|+.+++++|.+ .+|. .+ ...+++|++|+++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 7777777777766 5566666666665555 3331 10 1367788888888
Q ss_pred CCcCcccCCccccCCCCCCEEecccCcccc--cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEcc
Q 047097 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFN 352 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls 352 (443)
+|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+.+..+. ..+..+++|++|+++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-----~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-----GDCSWTKSLLSLNMS 407 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-----CSCCCCTTCCEEECC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-----chhccCccCCEEECc
Confidence 888887777778888888888888888876 4556677888888888888888763331 246677888888888
Q ss_pred CCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchh-ccCCCCCCeeecccCcCcc
Q 047097 353 RNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 353 ~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~ 431 (443)
+|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++
T Consensus 408 ~N~l~~~~~~~l~---~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC---TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc---ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 8888766665442 57888888888888 77877778888888888888888 66665 7788888888888888876
Q ss_pred ccC
Q 047097 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..+
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 654
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=347.34 Aligned_cols=366 Identities=21% Similarity=0.184 Sum_probs=252.8
Q ss_pred CceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccC-CcccCCCCCCCEEEccCCcCCCCCCc
Q 047097 62 CQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRQDMLEGLVLSNNSFSGTIPT 140 (443)
Q Consensus 62 c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 140 (443)
|.|..|.+ ...+++.|++++|.+++..+..|.++++|++|++++|...+.+ |.+|+++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34555554 2377999999999999888899999999999999999666555 78899999999999999999988899
Q ss_pred cccCCCCCcEEecccccceeccCcc--ccCCCCCcEEeccccccCCCCC-ccccCCCCCCEEEccCCcCcccc-ccccCC
Q 047097 141 NLSRCSNLIELFVDTNYLVGEIPAA--IGGLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRI-DSLVQL 216 (443)
Q Consensus 141 ~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l 216 (443)
.|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+.. ..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998766654 8899999999999999987655 57899999999999999876654 333333
Q ss_pred --Cc------------------------------CcEEecccCcCCCCCChhhhC-------------------------
Q 047097 217 --RN------------------------------LLLLDIAFNHFSGTIPPPIFN------------------------- 239 (443)
Q Consensus 217 --~~------------------------------L~~L~l~~n~~~~~~~~~l~~------------------------- 239 (443)
++ |+.|++++|.+++..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 34 455555555444333322211
Q ss_pred -------------CCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC
Q 047097 240 -------------ISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306 (443)
Q Consensus 240 -------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 306 (443)
.++|++|++++|.+.+.. ...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 145666666666655322 233336667777777777777666666777777777777777777666
Q ss_pred CccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc------------------Cc-------
Q 047097 307 SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE------------------LP------- 361 (443)
Q Consensus 307 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~------------------~p------- 361 (443)
+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++. +|
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCS------SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccCh------hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccc
Confidence 6677777777777777777766554 4567778888888888776631 00
Q ss_pred ---------------hhHHhhccCCCEEeCcCCcCcccC------------------------------chhhhcccCCC
Q 047097 362 ---------------HSVANLSSTIKQIAMGRNRISGTI------------------------------PPEIRKLVSLN 396 (443)
Q Consensus 362 ---------------~~~~~~~~~L~~L~l~~n~l~~~~------------------------------~~~l~~l~~L~ 396 (443)
..+.. .++|+.|++++|.+++.. +..+.++++|+
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLR-VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTT-CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred eeecccCccccCchhhhhhc-CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 01112 256666666666665321 12244556666
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCccccCccc
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSL 437 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (443)
.|+|++|++++..|..+..+++|+.|++++|++++..|..+
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 66666666665555556666666666666666665444433
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-39 Score=326.37 Aligned_cols=342 Identities=22% Similarity=0.232 Sum_probs=267.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 67899999999999888889999999999999999999888899999999999999999998 67766 8999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCCC--CEEEccCCcC--cccc-ccccC------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQ------------ 215 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~-~~l~~------------ 215 (443)
++|.+++ ..|..|+++++|++|++++|.+++. .+..+++| +.|++++|.+ .+.. ..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999986 3467899999999999999998854 34455555 9999999877 3322 22221
Q ss_pred --------------CC-------------------------------------------------------cCcEEeccc
Q 047097 216 --------------LR-------------------------------------------------------NLLLLDIAF 226 (443)
Q Consensus 216 --------------l~-------------------------------------------------------~L~~L~l~~ 226 (443)
++ +|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 12 455566666
Q ss_pred CcCCCCCChhh-----hCC--------------------------CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCC
Q 047097 227 NHFSGTIPPPI-----FNI--------------------------SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275 (443)
Q Consensus 227 n~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 275 (443)
|.+++.+|..+ ..+ .+|++|++++|.+. ..+ ....+++|++|++++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCC
Confidence 66665555544 222 22444444444443 111 113678899999999
Q ss_pred CcCcccCCccccCCCCCCEEecccCcccc--cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccC
Q 047097 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNR 353 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~ 353 (443)
|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+++..+. ..+..+++|++|++++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSS 437 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----CCCCCCTTCCEEECCS
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-----hhhcCcccCCEEECCC
Confidence 99988788888899999999999998886 3345678899999999999998874442 3567788999999999
Q ss_pred CcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchh-ccCCCCCCeeecccCcCccc
Q 047097 354 NRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 354 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~ 432 (443)
|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 438 n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 438 NMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCcchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999876665442 57999999999998 78888889999999999999999 67776 88899999999999999876
Q ss_pred cC
Q 047097 433 IP 434 (443)
Q Consensus 433 ~p 434 (443)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 55
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=328.09 Aligned_cols=351 Identities=20% Similarity=0.221 Sum_probs=270.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|++++|.+++..+..|.++++|++|++++|.+++..+.+|+++++|++|++++|.+.+..+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 56777777777777766667777777777777777777666666777777777777777776444445667777777777
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCC---------------------------------------------
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLP--------------------------------------------- 187 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------------------------------- 187 (443)
++|.+++ .+|..|+++++|++|++++|.+++..+
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 7776664 356667777777777766665543222
Q ss_pred ----------------------------------------------------------------ccccCCCCCCEEEccC
Q 047097 188 ----------------------------------------------------------------ASIGNLSSLLAFDVRE 203 (443)
Q Consensus 188 ----------------------------------------------------------------~~l~~l~~L~~L~l~~ 203 (443)
..+..+++|+.|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 2233456777777777
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChh--------------------hhCCCCCcEEEcccCCCCccC--chhh
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP--------------------IFNISSLEVISLSENRFTGSL--PVDT 261 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--------------------l~~~~~L~~L~l~~n~~~~~~--~~~~ 261 (443)
|.+...+..+..+ +|++|++++|.+. .+|.. ...+++|++|++++|.+.+.. +..+
T Consensus 292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 292 VTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp CEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred ccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc
Confidence 7766555555555 6666666666655 32221 156788999999999887432 4444
Q ss_pred hcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCC-ccccCCCCCCEEECCCCcCCCcCCCchhhhhhh
Q 047097 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340 (443)
Q Consensus 262 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 340 (443)
. .+++|++|++++|.+++. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+
T Consensus 370 ~-~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~ 441 (570)
T 2z63_A 370 F-GTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIF 441 (570)
T ss_dssp H-TCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT------TTT
T ss_pred c-ccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch------hhh
Confidence 4 899999999999999854 4448999999999999999987665 468899999999999999988766 678
Q ss_pred cCCCCCCEEEccCCccc-ccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCC
Q 047097 341 TNCSKLERLYFNRNRFE-GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNL 419 (443)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 419 (443)
..+++|++|++++|.++ +.+|..+..+ ++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcc-cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 89999999999999998 5688777775 899999999999998889999999999999999999998778889999999
Q ss_pred CeeecccCcCccccCc
Q 047097 420 QLLNLGGNFLQGSIPS 435 (443)
Q Consensus 420 ~~L~l~~n~l~~~~p~ 435 (443)
+.|++++|++++..|.
T Consensus 521 ~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEecCCcccCCCcc
Confidence 9999999999998874
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.8e-39 Score=330.18 Aligned_cols=358 Identities=21% Similarity=0.227 Sum_probs=205.5
Q ss_pred CcEEEEEcCCCCCceecCccccCCCC--CCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEE
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSF--LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~--L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 151 (443)
..++.|++++|.+.+..+..+..++. |++|++++|.+++..+..|+.+++|++|++++|.+.+..|..+.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 35677777777777777777776654 8888888888877777777788888888888888777777777777888888
Q ss_pred eccccccee-----ccCc----cccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc---ccccC--CC
Q 047097 152 FVDTNYLVG-----EIPA----AIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQ--LR 217 (443)
Q Consensus 152 ~l~~n~~~~-----~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~l~~--l~ 217 (443)
++++|...+ .+|. .|..+++|++|++++|.+++..+..+.++++|++|++++|.+.... ..+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 877654332 2222 5667777888888877777766777777777777777776543221 12222 24
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEec
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
+|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56666666666665555566666666666666666655555444445666666666666655444444444555555555
Q ss_pred ccCccc--ccCCccccCCCCCCEEECCCCcCCCcCC------------------------Cchh--hhhhhcCCCCCCEE
Q 047097 298 SRNQFS--GRVSVDFSRLKNLSWLNMGINNLGTGTA------------------------NELD--FINLLTNCSKLERL 349 (443)
Q Consensus 298 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~--~~~~l~~~~~L~~L 349 (443)
++|.+. +..|..+..+++|++|++++|.+++..+ .... ....+..+++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 555443 2334444445555555555554444333 0000 00123444555555
Q ss_pred EccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhcc-CCCCCCeeecccCc
Q 047097 350 YFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG-ELKNLQLLNLGGNF 428 (443)
Q Consensus 350 ~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~ 428 (443)
++++|+++ .+|...+...++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+. .+++|+.|++++|+
T Consensus 542 ~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 542 NLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred ECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 55555554 33332222224455555555555533333344555555555555555544444443 34555555555555
Q ss_pred Cccc
Q 047097 429 LQGS 432 (443)
Q Consensus 429 l~~~ 432 (443)
+...
T Consensus 621 ~~c~ 624 (680)
T 1ziw_A 621 FDCT 624 (680)
T ss_dssp CCBC
T ss_pred cccC
Confidence 5443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.6e-39 Score=316.91 Aligned_cols=338 Identities=18% Similarity=0.229 Sum_probs=291.9
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCC-CccccCCCCCcEEecccccceeccCccccCCCCCcEEe
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI-PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 176 (443)
++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999987555 56799999999999999999988899999999999999
Q ss_pred ccccccCCCCCcc--ccCCCCCCEEEccCCcCcccc-c-cccCCCcCcEEecccCcCCCCCChhhhCC--CCCcEEEccc
Q 047097 177 IFHNHITGQLPAS--IGNLSSLLAFDVRENILWGRI-D-SLVQLRNLLLLDIAFNHFSGTIPPPIFNI--SSLEVISLSE 250 (443)
Q Consensus 177 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~-~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~~--~~L~~L~l~~ 250 (443)
+++|.+++..+.. +.++++|++|++++|.+.+.. . .+..+++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999998885 3 38899999999999999998888877765 7899999999
Q ss_pred CCCCccCchhh--------hcCCCCccEEeCCCCcCcccCCccccCC---CCCCEEecccCcccccCC----------cc
Q 047097 251 NRFTGSLPVDT--------GVNLPNLRQLSPNGNNFTGSIPVSLSNA---SRLEMIEFSRNQFSGRVS----------VD 309 (443)
Q Consensus 251 n~~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~----------~~ 309 (443)
|.+.+ ++... ...+++|++|++++|.+++..|..+... ++|+.|++++|...+... ..
T Consensus 190 n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 190 ITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp CBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred Ccccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 99883 33221 1145789999999999998777766543 899999999986654321 11
Q ss_pred cc--CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCch
Q 047097 310 FS--RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP 387 (443)
Q Consensus 310 ~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 387 (443)
+. ..++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..|.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLK------SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECT------TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGG
T ss_pred cccccccCceEEEecCccccccch------hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChh
Confidence 22 23689999999999988777 678899999999999999997777777775 8999999999999988899
Q ss_pred hhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 388 EIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 388 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
.+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+.++++|
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999999999998889999999999999999999998776677777654
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-38 Score=319.82 Aligned_cols=343 Identities=20% Similarity=0.214 Sum_probs=282.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCC-CCCccccCCCCCcEEe
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSG-TIPTNLSRCSNLIELF 152 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ 152 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..+.++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 689999999999999888999999999999999999997777779999999999999999986 3577899999999999
Q ss_pred cccccceeccC-ccccCCCCCcEEeccccccCCCCCccccC------------------------CCCCCEEEccCCcCc
Q 047097 153 VDTNYLVGEIP-AAIGGLFKLERLFIFHNHITGQLPASIGN------------------------LSSLLAFDVRENILW 207 (443)
Q Consensus 153 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~~~ 207 (443)
+++|.+.+.+| ..+.++++|++|++++|.+++..|..+.+ +++|++|++++|.+.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 99998444554 68999999999999999998777776654 567777777777665
Q ss_pred ccc----cc-----------------------------------------------------------------------
Q 047097 208 GRI----DS----------------------------------------------------------------------- 212 (443)
Q Consensus 208 ~~~----~~----------------------------------------------------------------------- 212 (443)
+.. ..
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 521 00
Q ss_pred ----------------ccCCCcCcEEecccCcCCCCCChhh-hCCCCCcEEEcccCCCCccCchh--hhcCCCCccEEeC
Q 047097 213 ----------------LVQLRNLLLLDIAFNHFSGTIPPPI-FNISSLEVISLSENRFTGSLPVD--TGVNLPNLRQLSP 273 (443)
Q Consensus 213 ----------------l~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~l 273 (443)
+....+|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|.. ....+++|++|++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 001134666677777665 577776 47999999999999998766532 1337899999999
Q ss_pred CCCcCcccCC--ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEc
Q 047097 274 NGNNFTGSIP--VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYF 351 (443)
Q Consensus 274 ~~n~l~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L 351 (443)
++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++..... ..++|++|++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~---------~~~~L~~L~L 438 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC---------IPQTLEVLDV 438 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT---------SCTTCSEEEC
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch---------hcCCceEEEC
Confidence 9999985432 45889999999999999998 5777888999999999999998754331 1268999999
Q ss_pred cCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 352 NRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 352 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++.. .. .++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|+.+..+++|+.|++++|++++
T Consensus 439 s~N~l~~~~----~~-l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 439 SNNNLDSFS----LF-LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CSSCCSCCC----CC-CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCChhhhc----cc-CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 999999643 23 478999999999998 6776 5689999999999999998888889999999999999999998
Q ss_pred ccC
Q 047097 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..|
T Consensus 512 ~~~ 514 (549)
T 2z81_A 512 SCP 514 (549)
T ss_dssp CHH
T ss_pred CCc
Confidence 887
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=334.33 Aligned_cols=364 Identities=20% Similarity=0.200 Sum_probs=237.9
Q ss_pred CcEEEEEcCCCCCceec-CccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCcc--ccCCCCCcE
Q 047097 74 QRVTRLDLRNQSIGGTL-SPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTN--LSRCSNLIE 150 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~ 150 (443)
.+++.|++++|...+.+ +..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+.+|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 45566666666433333 455666666666666666666555666666666666666666665544433 556666666
Q ss_pred EecccccceeccC-ccccCCCCCcEEeccccccCCCCCc--------------------------cccCCCC------CC
Q 047097 151 LFVDTNYLVGEIP-AAIGGLFKLERLFIFHNHITGQLPA--------------------------SIGNLSS------LL 197 (443)
Q Consensus 151 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------~l~~l~~------L~ 197 (443)
|++++|.+++..+ ..|+++++|++|++++|.+++..+. .+..+.+ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 6666666554333 3456666666666666555444333 3333333 67
Q ss_pred EEEccCCcCcccc-cc------------------------------------ccC--CCcCcEEecccCcCCCCCChhhh
Q 047097 198 AFDVRENILWGRI-DS------------------------------------LVQ--LRNLLLLDIAFNHFSGTIPPPIF 238 (443)
Q Consensus 198 ~L~l~~n~~~~~~-~~------------------------------------l~~--l~~L~~L~l~~n~~~~~~~~~l~ 238 (443)
.|++++|.+.+.. .. +.. .++|+.|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 7777766443221 11 111 25677888888877766677777
Q ss_pred CCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCE
Q 047097 239 NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSW 318 (443)
Q Consensus 239 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
.+++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 778888888888877744343 3347778888888888777666777777778888888888777666666777777777
Q ss_pred EECCCCcCCCcCC------------------C----------------chhhhhhhcCCCCCCEEEccCCcccccCc---
Q 047097 319 LNMGINNLGTGTA------------------N----------------ELDFINLLTNCSKLERLYFNRNRFEGELP--- 361 (443)
Q Consensus 319 L~l~~n~l~~~~~------------------~----------------~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p--- 361 (443)
|++++|.+++... . .......+..+++|++|++++|.+++..+
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 7777776654221 0 00011223466777777777777653211
Q ss_pred ---------------------------hhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhcc
Q 047097 362 ---------------------------HSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 362 ---------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 414 (443)
..+.. .++|+.|++++|.+++..|..+.++++|+.|+|++|++++..|..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEG-LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC-BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred cccCCccccccCCCCccccccccccchhhhcC-cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 12223 37899999999999988888899999999999999999965555554
Q ss_pred CCCCCCeeecccCcCccccCccccCCC
Q 047097 415 ELKNLQLLNLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (443)
++|+.|++++|++++..|..|.+++
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred --ccccEEECCCCcCCCCChhHhCCcC
Confidence 8999999999999999999887664
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-36 Score=310.60 Aligned_cols=359 Identities=21% Similarity=0.231 Sum_probs=237.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..+++|||++|.+++..+.+|.++++|++|+|++|.+++..+.+|+++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46899999999999988899999999999999999999878889999999999999999999666678999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCcccc-ccccCCC--------------
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR-------------- 217 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~-------------- 217 (443)
++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.. ..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997766789999999999999999975 46788899999999999999876543 2221111
Q ss_pred -------------cCcEEecccCcCC-------------------------------CC---------------------
Q 047097 218 -------------NLLLLDIAFNHFS-------------------------------GT--------------------- 232 (443)
Q Consensus 218 -------------~L~~L~l~~n~~~-------------------------------~~--------------------- 232 (443)
.++.+++.+|... ..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 1111222111000 00
Q ss_pred ----------------------------CChhhhCCCCCcEEEcccCCCCccCchh-------------------hhcCC
Q 047097 233 ----------------------------IPPPIFNISSLEVISLSENRFTGSLPVD-------------------TGVNL 265 (443)
Q Consensus 233 ----------------------------~~~~l~~~~~L~~L~l~~n~~~~~~~~~-------------------~~~~~ 265 (443)
....+.....++.|++.+|.+.+ ++.. ....+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCcccchhhhhcccccccCCCCcccccc
Confidence 00011223345555555554331 1100 00134
Q ss_pred CCccEEeCCCCcCcc-------------------------cCCccccCCCCCCEEecccCcccccCC-ccccCCCCCCEE
Q 047097 266 PNLRQLSPNGNNFTG-------------------------SIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSWL 319 (443)
Q Consensus 266 ~~L~~L~l~~n~l~~-------------------------~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 319 (443)
++|+.+++++|.+.. ..+..+..+++|+.+++.++......+ ..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 566666666665531 112233444555555555554433222 234556666666
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc-CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCee
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE-LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 398 (443)
+++.|.+.+..+ ..+..+++|++|++++|.+.+. .|..+..+ ++|+.|++++|++++..|..|.++++|++|
T Consensus 451 ~ls~n~l~~~~~------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 451 DISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp ECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccc------cccccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 666666655544 4455666677777776654332 33334443 667777777777776666667777777777
Q ss_pred ccccccccccCchhccCCCCCCeeecccCcCccccCccccCC
Q 047097 399 TIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 399 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 440 (443)
+|++|++++..|..|..+++|+.|++++|++++..|..|.++
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 777777775556666677777777777777776666666554
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=302.91 Aligned_cols=347 Identities=16% Similarity=0.144 Sum_probs=281.5
Q ss_pred EEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc
Q 047097 78 RLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 157 (443)
.++.+++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 35556666653 444443 589999999999998888899999999999999999998889999999999999999999
Q ss_pred ceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChh
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPP 236 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
++...+..|.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.... ..+..+++|++|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 98665567899999999999999999888889999999999999999988776 68888999999999999998766667
Q ss_pred hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCC
Q 047097 237 IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 237 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+..+++|+.|++++|.+. .++...+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 888999999999999988 4555455588999999999988887777777677789999999999986555678889999
Q ss_pred CEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCC
Q 047097 317 SWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLN 396 (443)
Q Consensus 317 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 396 (443)
+.|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..+..+..+++|+
T Consensus 251 ~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 251 RFLNLSYNPISTIEG------SMLHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp CEEECCSSCCCEECT------TSCTTCTTCCEEECCSSCCSEECTTTBTTC-TTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred CeeECCCCcCCccCh------hhccccccCCEEECCCCccceECHHHhcCc-ccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 999999999887666 567888899999999999987777766665 7899999999999877667788889999
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
.|++++|.+...-+. .+-......+.+.++...-..|..
T Consensus 324 ~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 324 TLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp EEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESGG
T ss_pred EEEccCCCccCccch-HhHHhhhhccccCccCceeCCchH
Confidence 999999988743221 111122334555555554444443
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-37 Score=295.77 Aligned_cols=308 Identities=16% Similarity=0.154 Sum_probs=165.6
Q ss_pred cEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecc
Q 047097 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 154 (443)
.++.++++++.++...+..+..+++|++|++++|.+++..+.+|+.+++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 44555555555554444445556666666666666655444555666666666666666655555555566666666666
Q ss_pred cccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCC
Q 047097 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 155 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+++
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~--- 200 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST--- 200 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE---
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc---
Confidence 6665532223345566666666666666555555555566666666666555443 23344555566665555442
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
+...++|++|++++|.+. .+|.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..++
T Consensus 201 --~~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 201 --LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp --EECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred --cCCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 122345556666665554 33322 234556666666655532 3455555666666666655555555555555
Q ss_pred CCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccC
Q 047097 315 NLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVS 394 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 394 (443)
+|++|++++|.+++... ....+++|++|++++|+++ .+|..+..+ ++|+.|++++|.+++. + +..+++
T Consensus 273 ~L~~L~L~~n~l~~~~~-------~~~~l~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~L~~N~i~~~-~--~~~~~~ 340 (390)
T 3o6n_A 273 RLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTL-K--LSTHHT 340 (390)
T ss_dssp SCCEEECCSSCCCEEEC-------SSSCCTTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred cCCEEECCCCcCcccCc-------ccCCCCCCCEEECCCCcce-ecCcccccc-CcCCEEECCCCcccee-C--chhhcc
Confidence 66666666555544221 2244555555555555555 444444443 5555555555555532 2 444555
Q ss_pred CCeeccccccccc
Q 047097 395 LNWLTIDRNQLTG 407 (443)
Q Consensus 395 L~~L~l~~n~~~~ 407 (443)
|+.|++++|++.+
T Consensus 341 L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 341 LKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCEEH
T ss_pred CCEEEcCCCCccc
Confidence 5555555555553
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=300.75 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=274.8
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++.|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999998999999999999999999999888999999999999999999999666667899999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 999999888889999999999999999999888889999999999999999998887 6789999999999999999987
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
.+..+..+++|++|++++|...+.++...+ ...+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 778899999999999999988878887776 5669999999999999544467889999999999999999888888999
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCccc
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 384 (443)
+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++ +|...+...++|+.|++++|.+.+.
T Consensus 271 l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEP------YAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECT------TTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECH------HHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999998777 678899999999999999995 5544433348999999999998854
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=306.69 Aligned_cols=349 Identities=19% Similarity=0.223 Sum_probs=285.2
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 569999999984 665555 89999999999999877789999999999999999999877999999999999999999
Q ss_pred cceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCccccccccCCCcC--cEEecccCcC--CC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--LLLDIAFNHF--SG 231 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L--~~L~l~~n~~--~~ 231 (443)
.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc
Confidence 998 56665 89999999999999987 478999999999999999999876 455666777 9999999998 66
Q ss_pred CCChhhhCCC----------------------------------------------------------------------
Q 047097 232 TIPPPIFNIS---------------------------------------------------------------------- 241 (443)
Q Consensus 232 ~~~~~l~~~~---------------------------------------------------------------------- 241 (443)
..|..+..+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 6665554422
Q ss_pred -------------CCcEEEcccCCCCccCchhhh----cCCCCccEEeCCCCcCcccCC-c-------------------
Q 047097 242 -------------SLEVISLSENRFTGSLPVDTG----VNLPNLRQLSPNGNNFTGSIP-V------------------- 284 (443)
Q Consensus 242 -------------~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~-~------------------- 284 (443)
+|++|++++|.+.|.+|..++ ..+++|+.+++++|.+ .+| .
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 566677777777666776552 2455555555555544 122 0
Q ss_pred -----c-ccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 285 -----S-LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 285 -----~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
. ...+++|++|++++|++++..|..+..+++|++|++++|.+++.. .++..+..+++|++|++++|.+++
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS----KIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH----HHHHHHTTCTTCCEEECCSSCCBC
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc----cchHHHhhCCCCCEEECCCCcCCc
Confidence 0 157889999999999999888888999999999999999987521 233568899999999999999997
Q ss_pred cCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc-c
Q 047097 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS-L 437 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l 437 (443)
.+|...+...++|+.|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence 68876444458899999999999988877664 79999999999999 89998889999999999999999 56664 7
Q ss_pred cCCCCC
Q 047097 438 GNLTLL 443 (443)
Q Consensus 438 ~~l~~L 443 (443)
.++++|
T Consensus 465 ~~l~~L 470 (520)
T 2z7x_B 465 DRLTSL 470 (520)
T ss_dssp TTCTTC
T ss_pred ccCCcc
Confidence 776654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-36 Score=296.42 Aligned_cols=322 Identities=25% Similarity=0.371 Sum_probs=256.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+ +.++++|++|++++|.+++..+ ++++++|++|++++|.+.+. +. +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEEC
Confidence 567888888888776544 7788888888888888874433 78888888888888887743 33 778888888888
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ ++ .+..+++|++|+++ +.+.+. ..+.++++|+.|++++|.+... ..+..+++|++|++++|.+.+..
T Consensus 142 ~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 142 SSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence 8888764 33 47788888888886 344422 2378889999999999987665 45778889999999999888654
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+ +..+++|++|++++|.+. .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLK-DIGT-L-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCC-CCGG-G-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred c--ccccCCCCEEECCCCCcc-cchh-h-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 4 777899999999999887 4442 3 378999999999999985544 7888999999999999986544 7889
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
++|+.|++++|.+.+..+ +..+++|++|++++|++++..| +.. .++|+.|++++|.+++. ..+..++
T Consensus 287 ~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSS-LTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGG-CTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred CccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hcc-CccCCEeECCCCccCCc--hhhccCC
Confidence 999999999998876432 6788999999999999986655 444 48899999999999865 4788999
Q ss_pred CCCeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999997766 8889999999999999986
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-35 Score=292.73 Aligned_cols=332 Identities=27% Similarity=0.377 Sum_probs=281.3
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 568999999998875 33 488999999999999999854 44 9999999999999999985544 999999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++. +. +.++++|++|++++|.+.+ ++ .+..+++|++|++.+ .+... ..+..+++|++|++++|.+++.
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhccCCCCCEEECcCCcCCCC-
Confidence 99999854 33 8999999999999999985 33 589999999999974 33332 4488999999999999998753
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
..+..+++|++|++++|.+.+..+ . ..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ +..+
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--L-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred -hhhccCCCCCEEEecCCccccccc--c-cccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 458899999999999999985444 3 368999999999999984 3 457899999999999999987655 8899
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +.. .++|+.|++++|++++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--------LAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred CCCCEEECCCCccCcccc--------ccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh--hccCc
Confidence 999999999999876432 6789999999999999995443 455 4899999999999997765 78999
Q ss_pred CCCeeccccccccccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
+|+.|++++|++++. ..+..+++|+.|++++|++++..| +.++++|
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 999999999999954 468899999999999999998887 6666543
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-36 Score=304.49 Aligned_cols=350 Identities=20% Similarity=0.235 Sum_probs=282.5
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
.+.++++++.+++ +|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3789999999986 555454 8999999999999987778999999999999999999988899999999999999999
Q ss_pred ccceeccCccccCCCCCcEEeccccccCC-CCCccccCCCCCCEEEccCCcCccccccccCCCcC--cEEecccCcC--C
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--LLLDIAFNHF--S 230 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L--~~L~l~~n~~--~ 230 (443)
|.++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+... .+..+++| ++|++++|.+ +
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccccc
Confidence 9998 66766 89999999999999986 3468999999999999999998764 33444445 9999999998 6
Q ss_pred CCCChhhhCCC---------------------------------------------------------------------
Q 047097 231 GTIPPPIFNIS--------------------------------------------------------------------- 241 (443)
Q Consensus 231 ~~~~~~l~~~~--------------------------------------------------------------------- 241 (443)
+..|..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 66555554432
Q ss_pred ------------CCcEEEcccCCCCccCchhhh----cCC--------------------------CCccEEeCCCCcCc
Q 047097 242 ------------SLEVISLSENRFTGSLPVDTG----VNL--------------------------PNLRQLSPNGNNFT 279 (443)
Q Consensus 242 ------------~L~~L~l~~n~~~~~~~~~~~----~~~--------------------------~~L~~L~l~~n~l~ 279 (443)
+|++|++++|.+.|.+|..++ ..+ .+|++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 566666666666656655432 011 23555555555543
Q ss_pred ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 280 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
... ....+++|++|++++|.+++..|..+..+++|++|++++|.+++... .+..+..+++|++|++++|.+++.
T Consensus 345 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTCTTCCEEECTTSCCBSC
T ss_pred ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCCCCCCEEECCCCcCCCc
Confidence 211 11678999999999999999889999999999999999999976431 235678999999999999999976
Q ss_pred CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc-cc
Q 047097 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS-LG 438 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~ 438 (443)
+|...+...++|+.|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +.
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 8876555458999999999999987776654 79999999999999 89988889999999999999999 56665 77
Q ss_pred CCCCC
Q 047097 439 NLTLL 443 (443)
Q Consensus 439 ~l~~L 443 (443)
++++|
T Consensus 495 ~l~~L 499 (562)
T 3a79_B 495 RLTSL 499 (562)
T ss_dssp TCTTC
T ss_pred cCCCC
Confidence 76654
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-36 Score=305.26 Aligned_cols=333 Identities=15% Similarity=0.135 Sum_probs=226.7
Q ss_pred CCCCCCCCCCCCc----eeeeeeCCC----------------CCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcC
Q 047097 51 VTSSWNNSMNLCQ----WTGVICGRR----------------HQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 51 ~~~~w~~~~~~c~----~~~~~c~~~----------------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
...+|..+.+||. |..+.|+.. ...++.++++++.+....+..+..+++|++|++++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 4577887777774 554444310 03456677777777666666667777777888877777
Q ss_pred cccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccc
Q 047097 111 LGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASI 190 (443)
Q Consensus 111 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 190 (443)
++..+..|+.+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 76666677777777788887777776666667777777778777777774444446777777777777777777667777
Q ss_pred cCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccE
Q 047097 191 GNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQ 270 (443)
Q Consensus 191 ~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 270 (443)
.++++|+.|++++|.+.+.. +..+++|+.|++++|.+++ +...++|++|++++|.+. .++.. ..++|+.
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~ 236 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTI 236 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECS---CCSCCCE
T ss_pred hcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-ccccc---cCCCCCE
Confidence 77777777777777766553 4456677777777776653 234456777777777776 44433 2357777
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEE
Q 047097 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLY 350 (443)
Q Consensus 271 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 350 (443)
|++++|.+++ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.. ..+..+++|++|+
T Consensus 237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~~~l~~L~~L~ 307 (597)
T 3oja_B 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-------LYGQPIPTLKVLD 307 (597)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-------CSSSCCTTCCEEE
T ss_pred EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-------cccccCCCCcEEE
Confidence 7777777764 355677777777777777777777777777777777777777776532 2345567777777
Q ss_pred ccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccccc
Q 047097 351 FNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 351 Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
|++|.++ .+|..+..+ ++|+.|++++|.+++. + +..+++|+.|++++|.+.+.
T Consensus 308 Ls~N~l~-~i~~~~~~l-~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCC-ccCcccccC-CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 7777777 566666554 6777777777777643 2 55666777777777777643
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.2e-35 Score=277.57 Aligned_cols=305 Identities=22% Similarity=0.369 Sum_probs=199.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|+++++.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++. + +.+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 3444555555555444 222 24445555555555555442 222 4455555555555555442 2 235555555555
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+.+. +. +..+++|+.|++++|........+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE- 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-
Confidence 5555555522 22 555556666666655444444446666667777777776653322 667777788888777776
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.++. ...+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------ 258 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI------ 258 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC------
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC------
Confidence 4443 2367788888888887774333 6777888888888888875443 77888888888888877653
Q ss_pred hhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccC
Q 047097 336 FINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE 415 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 415 (443)
..+..+++|++|++++|.+++ ++ .+.. .++|+.|++++|.+++..+..+..+++|+.|++++|++++..| +..
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~-~~-~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISD-IS-VLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCC-CG-GGGG-CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred --hhHhcCCCcCEEEccCCccCC-Ch-hhcC-CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 346778889999999988884 33 3444 3789999999999988888889999999999999999985545 788
Q ss_pred CCCCCeeecccCcCc
Q 047097 416 LKNLQLLNLGGNFLQ 430 (443)
Q Consensus 416 l~~L~~L~l~~n~l~ 430 (443)
+++|+.|++++|+++
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999886
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5e-35 Score=281.46 Aligned_cols=352 Identities=15% Similarity=0.132 Sum_probs=282.3
Q ss_pred CCCCCCCCCCCc-eeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEcc
Q 047097 52 TSSWNNSMNLCQ-WTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLS 130 (443)
Q Consensus 52 ~~~w~~~~~~c~-~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 130 (443)
.++|..+.+||. |.+..|.... +.+............-..++++++|+++++.++...+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 456877777775 5555554221 1122221111222223457899999999999985555568899999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc
Q 047097 131 NNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210 (443)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 210 (443)
+|.+.+..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++...+..+.++++|++|++++|.+....
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99999777789999999999999999999887888999999999999999999544445699999999999999998877
Q ss_pred -ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCC
Q 047097 211 -DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289 (443)
Q Consensus 211 -~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 289 (443)
..+..+++|++|++++|.+++. .+..+++|++|++++|.+. .++ ..++|++|++++|.+... |.. ..
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~-~~~--~~ 225 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVV-RGP--VN 225 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEE-ECC--CC
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeec-ccc--cc
Confidence 6789999999999999999854 3667899999999999887 332 457899999999999844 432 35
Q ss_pred CCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc
Q 047097 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS 369 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 369 (443)
++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++ .+|..+..+ +
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l-~ 295 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY------HPFVKMQRLERLYISNNRLV-ALNLYGQPI-P 295 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES------GGGTTCSSCCEEECCSSCCC-EEECSSSCC-T
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh------hHccccccCCEEECCCCcCc-ccCcccCCC-C
Confidence 7999999999999864 568899999999999999988766 67889999999999999998 456555443 8
Q ss_pred CCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccC
Q 047097 370 TIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 370 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
+|+.|++++|.++ .+|..+..+++|+.|++++|+++ .++ +..+++|+.|++++|++.+...
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccchhH
Confidence 8999999999998 67888999999999999999998 444 6788999999999999986543
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-34 Score=283.63 Aligned_cols=331 Identities=18% Similarity=0.171 Sum_probs=263.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+++. | .+..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + +.++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 6789999999999875 4 689999999999999999864 4 88999999999999999864 4 889999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ ++ ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.. .+..+++|++|++++|.+++ +
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-e
Confidence 9999985 44 88999999999999999864 3 888999999999999554444 57788999999999999986 4
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| +..+++|++|++++|.+++ ++ + ..+++|++|++++|++++ +| +..+++|++|++++|++++..+ ..+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~-~~--l-~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l 253 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITK-LD--L-NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STL 253 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTC
T ss_pred c--cccCCCCCEEECcCCcCCe-ec--c-ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHC
Confidence 4 7889999999999999984 43 3 378999999999999996 56 7889999999999999987643 456
Q ss_pred CCCCEEECCCCcCCCcCCCchhhh--hhhcCCCCCCEEEccCCcccccCchhH--------HhhccCCCEEeCcCCcCcc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFI--NLLTNCSKLERLYFNRNRFEGELPHSV--------ANLSSTIKQIAMGRNRISG 383 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~--~~l~~~~~L~~L~Ls~n~l~~~~p~~~--------~~~~~~L~~L~l~~n~l~~ 383 (443)
++|+.|+++.|++.......-.+. .....+++|+.|++++|...+.+|... .. .++|+.|++++|++++
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-NPKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-CTTCCEEECTTCCCSC
T ss_pred CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh-cccCCEEECCCCcccc
Confidence 666666666655543322110000 114577899999999998777766422 22 3689999999999997
Q ss_pred cCchhhhcccCCCeeccccccccccCchhcc-------------CCCCCCeeecccCcCccccCcccc
Q 047097 384 TIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG-------------ELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-------------~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
. + +..+++|+.|++++|++++ ++. +. .+..|+.+++++|+++|.+|..+.
T Consensus 333 l-~--l~~l~~L~~L~l~~N~l~~-l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 333 L-D--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp C-C--CTTCTTCSEEECCSSCCCB-CTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred c-c--cccCCcCcEEECCCCCCCC-ccc-cccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 3 3 8889999999999999985 322 11 234678899999999999998654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-34 Score=290.49 Aligned_cols=313 Identities=16% Similarity=0.174 Sum_probs=273.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++++.+++++|.+....+..++.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 56789999999999986666678899999999999999998888899999999999999999998888889999999999
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
++++|.+++..+..++++++|++|++++|.+.+.+ ..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 99999999655556799999999999999998887 5789999999999999999864 2567899999999999887
Q ss_pred ccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCch
Q 047097 255 GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANEL 334 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.++ ..++|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..+
T Consensus 206 -~l~-----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~--- 271 (597)
T 3oja_B 206 -TLA-----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY--- 271 (597)
T ss_dssp -EEE-----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES---
T ss_pred -ccc-----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH---
Confidence 332 467899999999999843 3322 3689999999999986 4668999999999999999998776
Q ss_pred hhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhcc
Q 047097 335 DFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 335 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|.+++ +|..+..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| +.
T Consensus 272 ---~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~ 342 (597)
T 3oja_B 272 ---HPFVKMQRLERLYISNNRLVA-LNLYGQPI-PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LS 342 (597)
T ss_dssp ---GGGTTCSSCCEEECTTSCCCE-EECSSSCC-TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred ---HHhcCccCCCEEECCCCCCCC-CCcccccC-CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hh
Confidence 678899999999999999994 56655544 88999999999999 788889999999999999999984 44 67
Q ss_pred CCCCCCeeecccCcCccccC
Q 047097 415 ELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~~~~p 434 (443)
.+++|+.|++++|++.+..+
T Consensus 343 ~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp TTCCCSEEECCSSCEEHHHH
T ss_pred hcCCCCEEEeeCCCCCChhH
Confidence 78999999999999986543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-33 Score=266.11 Aligned_cols=303 Identities=23% Similarity=0.371 Sum_probs=258.7
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ + +.+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 6789999999998754 3 48899999999999999984 444 9999999999999999984 4 46899999999999
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+..... +..+++|++|++++|.+.+.
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~- 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI- 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC-
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccc-
Confidence 99999843 43 899999999999999766444 458999999999999998876655 78899999999999999844
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+. +..+++|+++++++|.+.+ ++. ...+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred cc-ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 33 8899999999999999984 443 33789999999999999854 33 88999999999999999864 458899
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|.+++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp TTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSSCCCCGG--GGGCT
T ss_pred CCcCEEEccCCccCCC--------hhhcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCccccccC--hhhhh
Confidence 9999999999998764 347788999999999999998878777775 899999999999997655 88999
Q ss_pred CCCeecccccccc
Q 047097 394 SLNWLTIDRNQLT 406 (443)
Q Consensus 394 ~L~~L~l~~n~~~ 406 (443)
+|+.|++++|.|+
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999886
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.2e-34 Score=277.45 Aligned_cols=304 Identities=20% Similarity=0.226 Sum_probs=257.3
Q ss_pred CccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCC
Q 047097 91 SPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLF 170 (443)
Q Consensus 91 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 170 (443)
+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + +++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 3467889999999999999986 45 69999999999999999996 44 88999999999999999864 3 89999
Q ss_pred CCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEccc
Q 047097 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 250 (443)
+|++|++++|.+++ +| ++.+++|++|++++|.+.+. .+..+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999999996 44 89999999999999999886 4788999999999999766565 478899999999999
Q ss_pred CCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcC
Q 047097 251 NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGT 330 (443)
Q Consensus 251 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
|.++ .+| + ..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+++..
T Consensus 180 n~l~-~l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 180 NKIT-ELD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCCC-CCC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred Cccc-eec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 9998 466 3 3789999999999999954 38899999999999999997 45 789999999999999998865
Q ss_pred CCchhhhhhhcCCC-------CCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCch--------hhhcccCC
Q 047097 331 ANELDFINLLTNCS-------KLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPP--------EIRKLVSL 395 (443)
Q Consensus 331 ~~~~~~~~~l~~~~-------~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~--------~l~~l~~L 395 (443)
+ ..+..+. +|+.|++++|.+.+.+|. .. +++|+.|++++|...+.+|. .+.++++|
T Consensus 250 ~------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~-l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 250 V------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EG-CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp C------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TT-CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred H------HHCCCCCEEeccCCCCCEEECCCCccCCcccc--cc-cccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 4 2233332 566677777777667763 33 47899999999987776664 25677899
Q ss_pred CeeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 396 NWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 396 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+.|++++|++++ ++ +..+++|+.|++++|++++
T Consensus 321 ~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 321 VYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 999999999996 43 8899999999999999997
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-33 Score=285.89 Aligned_cols=352 Identities=19% Similarity=0.175 Sum_probs=269.9
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|+|++|.+++..+.+|.++++|++|+|++|++++..+.+|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 67999999999999988889999999999999999999777778999999999999999999776778999999999999
Q ss_pred cccccee-ccCccccCCCCCcEEeccccccCCCCCccccCCCC---------------------------CCEEEccCCc
Q 047097 154 DTNYLVG-EIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSS---------------------------LLAFDVRENI 205 (443)
Q Consensus 154 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---------------------------L~~L~l~~n~ 205 (443)
++|.++. ..|..+..+++|++|++++|.+++..+..+..+.+ ++.+++.+|.
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 9999875 46778899999999999999887655544332211 1122222211
Q ss_pred Ccc-----------------------------------------------------------c-----------------
Q 047097 206 LWG-----------------------------------------------------------R----------------- 209 (443)
Q Consensus 206 ~~~-----------------------------------------------------------~----------------- 209 (443)
... .
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 000 0
Q ss_pred -----cccccCCCcCcEEecccCcCCCCCC-------------------hhhhCCCCCcEEEcccCCCCc--cCchh---
Q 047097 210 -----IDSLVQLRNLLLLDIAFNHFSGTIP-------------------PPIFNISSLEVISLSENRFTG--SLPVD--- 260 (443)
Q Consensus 210 -----~~~l~~l~~L~~L~l~~n~~~~~~~-------------------~~l~~~~~L~~L~l~~n~~~~--~~~~~--- 260 (443)
...+.....++.|++.+|.+.+..+ .....+++|+.+++++|.+.. ..+..
T Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 316 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp CEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 0011122345555555554432211 112345667777777776531 11111
Q ss_pred -------------------hhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEEE
Q 047097 261 -------------------TGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLN 320 (443)
Q Consensus 261 -------------------~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 320 (443)
.+..+++|+.+++.+++.....+ ..+..+++++.++++.|.+.+..+..+..++.++.|+
T Consensus 396 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 11256777778887776654443 4577899999999999999998899999999999999
Q ss_pred CCCCcCCC-cCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeec
Q 047097 321 MGINNLGT-GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLT 399 (443)
Q Consensus 321 l~~n~l~~-~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 399 (443)
+++|.+.. ..+ ..+..+++|++|+|++|++++..|..+..+ ++|+.|++++|++++..+..+.++++|+.|+
T Consensus 476 Ls~N~~~~~~~~------~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 476 MAGNSFQENFLP------DIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp CTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhcccccccCc------hhhhhccccCEEECCCCccCCcChHHHcCC-CCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 99997543 334 567889999999999999997777777775 8999999999999988888999999999999
Q ss_pred cccccccccCchhccCC-CCCCeeecccCcCccc
Q 047097 400 IDRNQLTGTIPPEIGEL-KNLQLLNLGGNFLQGS 432 (443)
Q Consensus 400 l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~l~~~ 432 (443)
+++|++++..|+.+..+ ++|+.|++++|++...
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999998889999888 6899999999999743
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.6e-34 Score=278.41 Aligned_cols=335 Identities=23% Similarity=0.279 Sum_probs=154.5
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCC-------------CEEEccCCcCCC----
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDML-------------EGLVLSNNSFSG---- 136 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~---- 136 (443)
.+++.|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4566677777776 5666667777777777777766666666666655432 455555554442
Q ss_pred ---------------CCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEc
Q 047097 137 ---------------TIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 137 ---------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
.+|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++++++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 13322 2344555555544442 1111 1466777777777664 55 4677777777777
Q ss_pred cCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCccc
Q 047097 202 RENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGS 281 (443)
Q Consensus 202 ~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 281 (443)
++|.+.+.+... .+|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. ..++|++|++++|.++ .
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-S
T ss_pred CCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCC----CcCcccEEECcCCcCC-c
Confidence 777666544322 366666666666664 44 4666666666666666665 3432 1245666666666655 4
Q ss_pred CCccccCCCCCCEEecccCcccccCCccc-----------------cCCCCCCEEECCCCcCCCcC--CCchhh------
Q 047097 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDF-----------------SRLKNLSWLNMGINNLGTGT--ANELDF------ 336 (443)
Q Consensus 282 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~--~~~~~~------ 336 (443)
+|. +..+++|++|++++|++++ +|... ...++|++|++++|.+++.. +.....
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred ccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC
Confidence 442 5556666666666665553 22110 01234555555555444311 100000
Q ss_pred -hhhhcCC-CCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccc--cCchh
Q 047097 337 -INLLTNC-SKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG--TIPPE 412 (443)
Q Consensus 337 -~~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~ 412 (443)
...+... ++|++|++++|++++ +|.. .++|+.|++++|+++ .+|. .+++|+.|++++|++++ .+|..
T Consensus 308 ~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 308 EIRSLCDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp CCSEECCCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred cCCcccCCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 0001122 356666666666553 4432 255677777777666 4554 35677777777777776 56666
Q ss_pred ccCC-------------CCCCeeecccCcCcc--ccCccccCC
Q 047097 413 IGEL-------------KNLQLLNLGGNFLQG--SIPSSLGNL 440 (443)
Q Consensus 413 ~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~~l 440 (443)
+..+ ++|+.|++++|++++ .+|.++.++
T Consensus 379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CCEEECCC-----------------------------------
T ss_pred HHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 6666 667777777777777 677666655
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.9e-33 Score=271.14 Aligned_cols=314 Identities=25% Similarity=0.283 Sum_probs=158.4
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
++++.|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .+.++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456667777776665 3322 2556666666665553 2211 1456666666666653 44 3566666666666
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ +|..+ .+|++|++++|.+++ +| .++++++|+.|++++|.+.+.+... ++|++|++++|.++ .+
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-EL 230 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cc
Confidence 6666553 33322 356666666666553 34 4555666666666666555433211 35555555555555 34
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccc-----------------cCCCCCCEEe
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL-----------------SNASRLEMIE 296 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----------------~~~~~L~~L~ 296 (443)
| .+..+++|++|++++|.+. .+|. .+++|++|++++|.+++ +|... ...++|++|+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~ 303 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence 4 2555555555555555555 3332 23455555555555542 33221 0013445555
Q ss_pred cccCcccccCCccccCC-CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEe
Q 047097 297 FSRNQFSGRVSVDFSRL-KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIA 375 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ 375 (443)
+++|++++ +..+ ++|++|++++|.+++... .+++|++|++++|.++ .+|. ..++|+.|+
T Consensus 304 l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~lp~----------~~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~ 363 (454)
T 1jl5_A 304 ASSNEIRS-----LCDLPPSLEELNVSNNKLIELPA----------LPPRLERLIASFNHLA-EVPE----LPQNLKQLH 363 (454)
T ss_dssp CCSSCCSE-----ECCCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-CCCC----CCTTCCEEE
T ss_pred CcCCcCCc-----ccCCcCcCCEEECCCCccccccc----------cCCcCCEEECCCCccc-cccc----hhhhccEEE
Confidence 55555443 1223 478888888888876322 2589999999999999 6776 247899999
Q ss_pred CcCCcCcc--cCchhhhcc-------------cCCCeeccccccccc--cCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 376 MGRNRISG--TIPPEIRKL-------------VSLNWLTIDRNQLTG--TIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 376 l~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
+++|++++ .+|.++..+ ++|+.|++++|++++ .+|. .++.|.+.+|.+.+.+|.+..
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC---------------------------------------------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHH
Confidence 99999998 788888888 899999999999996 5554 367788999999988887655
Q ss_pred CC
Q 047097 439 NL 440 (443)
Q Consensus 439 ~l 440 (443)
..
T Consensus 438 ~~ 439 (454)
T 1jl5_A 438 TT 439 (454)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.1e-35 Score=272.36 Aligned_cols=270 Identities=20% Similarity=0.278 Sum_probs=183.1
Q ss_pred CCCCHHHHHHHHHHHhhCC-CCCCCCCCC----CCCCCCCceeeeeeCC--------CCCcEEEEEcCCCCCceecCccc
Q 047097 28 ANSNETDRLALLAIKSQLH-DPLGVTSSW----NNSMNLCQWTGVICGR--------RHQRVTRLDLRNQSIGGTLSPYV 94 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~~~~~~c~~--------~~~~v~~L~l~~~~l~~~~~~~~ 94 (443)
..+..+++.||++||..+. ++..+...| ....++|.|.|+.|.. ...+|+.|+++++.++ .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 3456778999999999884 776677889 4567899999999942 2367888888888887 666778
Q ss_pred cCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccC------
Q 047097 95 GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGG------ 168 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~------ 168 (443)
.++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88888888888888888 78888888888888888888888 77888888888888888888777777766543
Q ss_pred ---CCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcE
Q 047097 169 ---LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEV 245 (443)
Q Consensus 169 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 245 (443)
+++|++|++++|.++ .+|..+.++++|++|++++|.+.+ +|..+..+++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~------------------------l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------------------------LGPAIHHLPKLEE 233 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC------------------------CCGGGGGCTTCCE
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc------------------------CchhhccCCCCCE
Confidence 555555555555555 445555555555555555444444 3444555555555
Q ss_pred EEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 246 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 55555555545544433 45555555555555555555555555666666666665555566666666666666665444
Q ss_pred C
Q 047097 326 L 326 (443)
Q Consensus 326 l 326 (443)
+
T Consensus 313 ~ 313 (328)
T 4fcg_A 313 Q 313 (328)
T ss_dssp S
T ss_pred H
Confidence 3
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.6e-36 Score=297.06 Aligned_cols=353 Identities=16% Similarity=0.170 Sum_probs=159.1
Q ss_pred cEEEEEcCCCCCceecCcc-ccCCCCCCEEECCCCcCcc----cCCcccCCCCCCCEEEccCCcCCCCCCccc-cCCC--
Q 047097 75 RVTRLDLRNQSIGGTLSPY-VGNLSFLRYINLANNGFLG----EIPPQIGRQDMLEGLVLSNNSFSGTIPTNL-SRCS-- 146 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~-~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~-- 146 (443)
+++.|+++++.++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4555555555554332222 4455555555555555543 233444555555555555555543222222 1222
Q ss_pred --CCcEEeccccccee----ccCccccCCCCCcEEeccccccCCCCCcccc-----CCCCCCEEEccCCcCcccc-----
Q 047097 147 --NLIELFVDTNYLVG----EIPAAIGGLFKLERLFIFHNHITGQLPASIG-----NLSSLLAFDVRENILWGRI----- 210 (443)
Q Consensus 147 --~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~----- 210 (443)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 45555555555542 2344555555555555555554432222111 1334555555555544322
Q ss_pred ccccCCCcCcEEecccCcCCCCCChhhh-----CCCCCcEEEcccCCCCcc----CchhhhcCCCCccEEeCCCCcCccc
Q 047097 211 DSLVQLRNLLLLDIAFNHFSGTIPPPIF-----NISSLEVISLSENRFTGS----LPVDTGVNLPNLRQLSPNGNNFTGS 281 (443)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~ 281 (443)
..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+. .+++|++|++++|.+++.
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChH
Confidence 2333445555555555554432222221 134555555555555421 222222 445555555555554422
Q ss_pred C-----CccccCCCCCCEEecccCccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhc-CCCCCCEEEc
Q 047097 282 I-----PVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT-NCSKLERLYF 351 (443)
Q Consensus 282 ~-----~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~~~~L~~L~L 351 (443)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.... .+...+. ..++|++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--HHHHHhccCCccceeeEc
Confidence 1 11122345555555555555432 233344455555555555544322110 0111111 1235555555
Q ss_pred cCCccccc----CchhHHhhccCCCEEeCcCCcCcccCchhhhc-----ccCCCeeccccccccc----cCchhccCCCC
Q 047097 352 NRNRFEGE----LPHSVANLSSTIKQIAMGRNRISGTIPPEIRK-----LVSLNWLTIDRNQLTG----TIPPEIGELKN 418 (443)
Q Consensus 352 s~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~~~~----~~p~~~~~l~~ 418 (443)
++|.+++. ++..+... ++|+.|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQN-RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHC-SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred CCCCCchHHHHHHHHHHhhC-CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 55555433 22222222 45555555555555433333322 3455555555555553 44555555555
Q ss_pred CCeeecccCcCcc
Q 047097 419 LQLLNLGGNFLQG 431 (443)
Q Consensus 419 L~~L~l~~n~l~~ 431 (443)
|+.|++++|++++
T Consensus 400 L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 400 LRELDLSNNCLGD 412 (461)
T ss_dssp CCEEECCSSSCCH
T ss_pred ccEEECCCCCCCH
Confidence 5555555555543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.4e-32 Score=256.94 Aligned_cols=287 Identities=20% Similarity=0.289 Sum_probs=173.0
Q ss_pred CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecc
Q 047097 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 178 (443)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5778888877776 5565443 567778888777776556677777777777777777776667777777777777777
Q ss_pred ccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCC--CCChhhhCCCCCcEEEcccCCCCc
Q 047097 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSG--TIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
+|.++ .+|..+. ++|++|++++|.+...+ ..+..+++|+.|++++|.++. ..+..+..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--------------- 172 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--------------- 172 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---------------
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC---------------
Confidence 77776 4444433 45555555555554444 234444455555555444431 223333333
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
+|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 173 -----------~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~---- 234 (332)
T 2ft3_A 173 -----------KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN---- 234 (332)
T ss_dssp -----------CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT----
T ss_pred -----------ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh----
Confidence 45555555555542 333322 455556666665555555555556666666666666555444
Q ss_pred hhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc------ccCCCeecccccccc--c
Q 047097 336 FINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK------LVSLNWLTIDRNQLT--G 407 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~--~ 407 (443)
..+..+++|++|++++|+++ .+|..+..+ ++|+.|++++|.+++..+..+.. ..+|+.|++++|.+. +
T Consensus 235 --~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 235 --GSLSFLPTLRELHLDNNKLS-RVPAGLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp --TGGGGCTTCCEEECCSSCCC-BCCTTGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred --hHhhCCCCCCEEECCCCcCe-ecChhhhcC-ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 34555566666666666666 556555553 56666666666666544444433 356788888888876 5
Q ss_pred cCchhccCCCCCCeeecccCc
Q 047097 408 TIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~ 428 (443)
..|..|..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 567778888888888888874
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.7e-32 Score=254.14 Aligned_cols=288 Identities=20% Similarity=0.265 Sum_probs=179.0
Q ss_pred CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecc
Q 047097 99 FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 178 (443)
++++++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788888888876 5565443 578888888888886666678888888888888888887667788888888888888
Q ss_pred ccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCC--CCChhhhCCCCCcEEEcccCCCCc
Q 047097 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSG--TIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
+|.++ .+|..+. ++|++|++++|.+.... ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 88877 4555443 56777777777666555 456666666666666666642 44555566666666666666665
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|... .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++.. +
T Consensus 185 ~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p---- 256 (330)
T 1xku_A 185 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P---- 256 (330)
T ss_dssp SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C----
T ss_pred cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-C----
Confidence 444432 25555666666655554455555555555555555555554444455555555555555555421 1
Q ss_pred hhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhh------cccCCCeeccccccccc--
Q 047097 336 FINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIR------KLVSLNWLTIDRNQLTG-- 407 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~------~l~~L~~L~l~~n~~~~-- 407 (443)
..+..+++|++|++++|+++ +..+..++ ..++++.|++++|.+..
T Consensus 257 --~~l~~l~~L~~L~l~~N~i~-------------------------~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 257 --GGLADHKYIQVVYLHNNNIS-------------------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp --TTTTTCSSCCEEECCSSCCC-------------------------CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred --hhhccCCCcCEEECCCCcCC-------------------------ccChhhcCCcccccccccccceEeecCcccccc
Confidence 22344455555555555554 33222222 23567777777777652
Q ss_pred cCchhccCCCCCCeeecccCc
Q 047097 408 TIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~ 428 (443)
..|..|..++.++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 445667777778888887774
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.7e-32 Score=255.59 Aligned_cols=293 Identities=20% Similarity=0.217 Sum_probs=210.0
Q ss_pred cEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecc
Q 047097 75 RVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 154 (443)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3567888888886 455544 3689999999999997778899999999999999999998779999999999999999
Q ss_pred cccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcc--cc-ccccCCCcCcEEecccCcCCC
Q 047097 155 TNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG--RI-DSLVQLRNLLLLDIAFNHFSG 231 (443)
Q Consensus 155 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~-~~l~~l~~L~~L~l~~n~~~~ 231 (443)
+|.++ .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. .. ..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 6666555 899999999999997766779999999999999999864 22 566666 89999999999884
Q ss_pred CCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcccc
Q 047097 232 TIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 232 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
+|..+. ++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred -cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 554443 577777777777763 33233336667777777777776555556666667777777776666 4555566
Q ss_pred CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCc--ccCchhh
Q 047097 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRIS--GTIPPEI 389 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~--~~~~~~l 389 (443)
.+++|++|++++|.+++..+. .+.... +......|+.|++++|.+. +..|..+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~------~~~~~~-------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVN------DFCPVG-------------------FGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTT------SSSCSS-------------------CCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred cCccCCEEECCCCCCCccChh------Hccccc-------------------cccccccccceEeecCcccccccCcccc
Confidence 666666666666666554431 111100 0000134666666666655 4455667
Q ss_pred hcccCCCeecccccc
Q 047097 390 RKLVSLNWLTIDRNQ 404 (443)
Q Consensus 390 ~~l~~L~~L~l~~n~ 404 (443)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 777777777777764
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-31 Score=251.83 Aligned_cols=271 Identities=19% Similarity=0.218 Sum_probs=221.4
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
++.++++++.++. +|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 33 l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4567777777763 444443 6899999999999977777899999999999999999988899999999999999999
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcc--cc-ccccCCCcCcEEecccCcCCCC
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG--RI-DSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
|.++ .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. .. ..+..+++|++|++++|.++ .
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 9998 5666554 799999999999998777789999999999999999864 22 67889999999999999998 4
Q ss_pred CChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccC
Q 047097 233 IPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
+|..+. ++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 555443 899999999999985445444 48999999999999999877778999999999999999998 67778999
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
+++|++|++++|.+++.....+.-.......+.++.+++++|++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 999999999999998776532211111112345555566555553
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-32 Score=256.60 Aligned_cols=248 Identities=31% Similarity=0.529 Sum_probs=143.9
Q ss_pred CCCEEEccCCcCCC--CCCccccCCCCCcEEeccc-ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEE
Q 047097 123 MLEGLVLSNNSFSG--TIPTNLSRCSNLIELFVDT-NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 123 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---------- 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF---------- 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH----------
Confidence 45556666665555 4555555555555555553 5555555555555555555555555544444433
Q ss_pred EccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCC-CccEEeCCCCcC
Q 047097 200 DVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLP-NLRQLSPNGNNF 278 (443)
Q Consensus 200 ~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~l 278 (443)
+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+. .++ +|++|++++|.+
T Consensus 121 -------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 121 -------------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRL 186 (313)
T ss_dssp -------------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEE
T ss_pred -------------HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCee
Confidence 34445555555555566556666666666677777776666666665555 444 666666666666
Q ss_pred cccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
++.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++|.+++..+ .+..+
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~l--------------- 243 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------KVGLS--------------- 243 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-------GCCCC---------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-------ccccc---------------
Confidence 666666666554 6666666666665555555555555555555555543222 12233
Q ss_pred cCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCc
Q 047097 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNF 428 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
++|+.|++++|.+++.+|..+..+++|+.|++++|+++|.+|+. ..+++|+.+++++|+
T Consensus 244 ----------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 ----------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ----------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ----------CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 45555566666665556666666666666666666666666654 556666666666665
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.8e-34 Score=283.88 Aligned_cols=361 Identities=15% Similarity=0.093 Sum_probs=283.1
Q ss_pred CcEEEEEcCCCCCcee----cCccccCCCCCCEEECCCCcCcccCCccc-CCCC----CCCEEEccCCcCCC----CCCc
Q 047097 74 QRVTRLDLRNQSIGGT----LSPYVGNLSFLRYINLANNGFLGEIPPQI-GRQD----MLEGLVLSNNSFSG----TIPT 140 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~----~L~~L~l~~n~l~~----~~~~ 140 (443)
++++.|++++|.+++. ++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|.+.+ .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 5688999999998753 45678889999999999999986444333 2344 79999999999984 4588
Q ss_pred cccCCCCCcEEecccccceeccCcccc-----CCCCCcEEeccccccCCCC----CccccCCCCCCEEEccCCcCcccc-
Q 047097 141 NLSRCSNLIELFVDTNYLVGEIPAAIG-----GLFKLERLFIFHNHITGQL----PASIGNLSSLLAFDVRENILWGRI- 210 (443)
Q Consensus 141 ~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~- 210 (443)
.+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 889999999999999998755444332 3568999999999988643 556677899999999999987654
Q ss_pred cccc-----CCCcCcEEecccCcCCCC----CChhhhCCCCCcEEEcccCCCCccC----chhhhcCCCCccEEeCCCCc
Q 047097 211 DSLV-----QLRNLLLLDIAFNHFSGT----IPPPIFNISSLEVISLSENRFTGSL----PVDTGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 211 ~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~ 277 (443)
..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. .......+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2332 366999999999999864 5677788999999999999987432 23333358999999999999
Q ss_pred Cccc----CCccccCCCCCCEEecccCcccccCCcccc-----CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCE
Q 047097 278 FTGS----IPVSLSNASRLEMIEFSRNQFSGRVSVDFS-----RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLER 348 (443)
Q Consensus 278 l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 348 (443)
+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++... ..++..+..+++|++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC--SHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HHHHHHHHHCSSCCE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH--HHHHHHHhhCCCccE
Confidence 9854 577778899999999999999865544443 33799999999999876432 234467788899999
Q ss_pred EEccCCcccccCchhHHhh----ccCCCEEeCcCCcCcc----cCchhhhcccCCCeeccccccccccCchhcc-----C
Q 047097 349 LYFNRNRFEGELPHSVANL----SSTIKQIAMGRNRISG----TIPPEIRKLVSLNWLTIDRNQLTGTIPPEIG-----E 415 (443)
Q Consensus 349 L~Ls~n~l~~~~p~~~~~~----~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~ 415 (443)
|++++|.+++..+..+... .++|+.|++++|.+++ .+|..+..+++|++|++++|++++.....+. .
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 9999999987766666542 3689999999999997 7888899999999999999999864333222 2
Q ss_pred CCCCCeeecccCcCccccCcc
Q 047097 416 LKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~~~p~~ 436 (443)
..+|+.|.+.++.+....++.
T Consensus 426 ~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp TCCCCEEECTTCCCCHHHHHH
T ss_pred CcchhheeecccccCHHHHHH
Confidence 456888888888877655543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=245.34 Aligned_cols=286 Identities=16% Similarity=0.173 Sum_probs=206.9
Q ss_pred CCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcC
Q 047097 55 WNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSF 134 (443)
Q Consensus 55 w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 134 (443)
|......|.|.++ | +.+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c----------~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-C----------KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-E----------ECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-e----------eCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 4444566777655 4 445666653 444443 4899999999999876666899999999999999999
Q ss_pred CCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCC-ccccCCCCCCEEEccCCc-Ccccc-c
Q 047097 135 SGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENI-LWGRI-D 211 (443)
Q Consensus 135 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~-~ 211 (443)
.+..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++|. +.... .
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 87777889999999999999999985544558899999999999999884333 378889999999999884 55554 6
Q ss_pred cccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccc---cC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSL---SN 288 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~ 288 (443)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|......+++|++|++++|.+++..+..+ ..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 7888899999999999998888888888999999999999886 6776666568889999999998885444333 23
Q ss_pred CCCCCEEecccCcccc----cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCc
Q 047097 289 ASRLEMIEFSRNQFSG----RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 361 (443)
...++.++++++.+.+ .+|..+..+++|++|++++|.++.... ..+..+++|++|++++|++.+..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcCC
Confidence 4556666676666654 234445666666666666666654332 234556666666666666664433
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.8e-29 Score=233.18 Aligned_cols=263 Identities=23% Similarity=0.260 Sum_probs=157.8
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCC--CCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGT--IPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
+++++|++++|.++...+..|+++++|++|++++|.+... .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5789999999988854445578888899999988887732 2556667788888888888776 456667777777777
Q ss_pred eccccccCCCCC-ccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 176 FIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
++++|.+++..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l-----------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSL-----------------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ECTTSEEESSTTTTTTTTC-----------------------TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCcccccccchhhhhc-----------------------cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 777777664332 234444 44444455555444444455555566666666666555
Q ss_pred c-cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc
Q 047097 255 G-SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333 (443)
Q Consensus 255 ~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
+ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 164 ~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 240 (306)
T 2z66_A 164 ENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-- 240 (306)
T ss_dssp GGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS--
T ss_pred cccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH--
Confidence 3 2333222 55666666666666665555566666666666666666665555556666666666666666665544
Q ss_pred hhhhhhhcCC-CCCCEEEccCCcccccCch-hHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 334 LDFINLLTNC-SKLERLYFNRNRFEGELPH-SVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 334 ~~~~~~l~~~-~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
..+..+ ++|++|++++|++++.-+. ++..+....+.+.+..+.+....|..+.+
T Consensus 241 ----~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 241 ----QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp ----SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred ----HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 334444 3666666666666543221 12222223333444444555455544443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.1e-29 Score=234.07 Aligned_cols=281 Identities=17% Similarity=0.185 Sum_probs=182.9
Q ss_pred CEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceec--cCccccCCCCCcEEecc
Q 047097 101 RYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGE--IPAAIGGLFKLERLFIF 178 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~ 178 (443)
+.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 4444332 4566666666666633333355666666666666655421 13334444444444444
Q ss_pred ccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCCCCccC
Q 047097 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
+| .+...+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 87 ~n------------------------~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FN------------------------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp SC------------------------SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CC------------------------ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 44 444333445556667777777776664433 46777888888998888887544
Q ss_pred chhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhh
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDF 336 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 336 (443)
+.. +..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 143 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 216 (306)
T 2z66_A 143 NGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----- 216 (306)
T ss_dssp TTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-----
T ss_pred hhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-----
Confidence 443 3378888888888888875 567778888888888888888887777778888888888888888876655
Q ss_pred hhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC--chhhhcccCCCeeccccccccccCchhcc
Q 047097 337 INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI--PPEIRKLVSLNWLTIDRNQLTGTIPPEIG 414 (443)
Q Consensus 337 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|++++..|..+...+++|+.|++++|.+++.- ......+...+.+.+..+.+....|+.+.
T Consensus 217 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 217 -FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred -hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 456777888888888888887777666665457888888888776531 11223344455566666666666666655
Q ss_pred C
Q 047097 415 E 415 (443)
Q Consensus 415 ~ 415 (443)
+
T Consensus 296 g 296 (306)
T 2z66_A 296 G 296 (306)
T ss_dssp T
T ss_pred C
Confidence 4
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.5e-30 Score=241.59 Aligned_cols=282 Identities=20% Similarity=0.198 Sum_probs=173.8
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEE
Q 047097 120 RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 120 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
.++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4555667788888888 6676554 588889999888886666678888888888888888887667777777777777
Q ss_pred EccCCcCcccc-ccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCC-CCccCchhhhcCCCCccEEeCCCC
Q 047097 200 DVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENR-FTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 200 ~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
++++|.+...+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +. .++...+..+++|++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCC
Confidence 77777776655 336666677777777766663222 245566666666666663 33 343333335566666666666
Q ss_pred cCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcc
Q 047097 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRF 356 (443)
Q Consensus 277 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 356 (443)
.+++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++...... ......
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~~~~~------------- 248 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL---STGETN------------- 248 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CC-------------
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc---cccccc-------------
Confidence 6655555555556666666666665543322223345555555555555544332111 011122
Q ss_pred cccCchhHHhhccCCCEEeCcCCcCcc----cCchhhhcccCCCeeccccccccccCchh-ccCCCCCCeeecccCcCcc
Q 047097 357 EGELPHSVANLSSTIKQIAMGRNRISG----TIPPEIRKLVSLNWLTIDRNQLTGTIPPE-IGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 357 ~~~~p~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~ 431 (443)
+.++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+
T Consensus 249 ------------~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 249 ------------SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ------------CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------------chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 334455555554443 35566667777777777777776 55554 3667777777777777766
Q ss_pred ccC
Q 047097 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 554
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.1e-28 Score=224.83 Aligned_cols=267 Identities=21% Similarity=0.243 Sum_probs=163.3
Q ss_pred CEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecccc
Q 047097 101 RYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHN 180 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 180 (443)
++++.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 344322 345666666666666544455666666666666666666555555666666666666665
Q ss_pred c-cCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCch
Q 047097 181 H-ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 181 ~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 259 (443)
. +....|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+. .++.
T Consensus 91 ~~l~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFH-----------------------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146 (285)
T ss_dssp TTCCCCCTTTTT-----------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCccccCHHHhc-----------------------CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCH
Confidence 4 4433344444 4455555555555555555555666677777777777766 4444
Q ss_pred hhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhh
Q 047097 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339 (443)
Q Consensus 260 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+ ..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HH
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH------HH
Confidence 434466777777777777775555557777777888888887777777777777788888888877776544 45
Q ss_pred hcCCCCCCEEEccCCcccccCch-hHHhhccCCCEEeCcCCcCcccCchhhhc--ccCCCeeccccc
Q 047097 340 LTNCSKLERLYFNRNRFEGELPH-SVANLSSTIKQIAMGRNRISGTIPPEIRK--LVSLNWLTIDRN 403 (443)
Q Consensus 340 l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n 403 (443)
+..+++|++|++++|++....+. ++.. .++.+..+.+.+.+..|..+.+ +..++..++.+|
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~~---~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRARPLWA---WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGGHHHHH---HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccCcccCEEeccCCCccCCCCcHHHHH---HHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 67777888888888877644332 1212 2344445566666666665543 344444444444
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.1e-28 Score=231.00 Aligned_cols=236 Identities=18% Similarity=0.217 Sum_probs=211.3
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
..+++++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 78888999999999999999999 88999999999999999999998 788899999999999
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+.+.+|..+... . ....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~--------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------D--------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C---------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred ECCCCCCccccChhHhhc------c--------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 999988888888766431 0 1134667889999999999998 88999999999999999999999
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|..+. .+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+..|
T Consensus 220 ~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP---- 294 (328)
T 4fcg_A 220 ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP---- 294 (328)
T ss_dssp CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----
T ss_pred cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc----
Confidence 6777655 89999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhcCCCCCCEEEccCCccc
Q 047097 336 FINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
..+..+++|+.+++..+.+.
T Consensus 295 --~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 --SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp --GGGGGSCTTCEEECCGGGSC
T ss_pred --HHHhhccCceEEeCCHHHHH
Confidence 78899999999999987665
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.4e-27 Score=240.22 Aligned_cols=268 Identities=25% Similarity=0.287 Sum_probs=215.6
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEec
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 177 (443)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35899999999998 7777665 79999999999998 5666 5789999999999998 5665 6789999999
Q ss_pred cccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
++|.+++ +|. .+++|+.|++++|.+...+.. +++|++|++++|.+++ +|. .+++|+.|++++|.++ .+
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l 176 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SL 176 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CC
Confidence 9999984 454 578899999999988876643 3789999999998874 443 3577899999999988 57
Q ss_pred chhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhh
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFI 337 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 337 (443)
| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+++|+.|++++|.+++..
T Consensus 177 ~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp------- 237 (622)
T 3g06_A 177 P----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP------- 237 (622)
T ss_dssp C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC-------
T ss_pred c----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC-------
Confidence 6 257889999999999884 5543 4788999999998874 333 3578999999999887633
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCC
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEL 416 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l 416 (443)
..+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..|..+..+
T Consensus 238 ---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 34578899999999888 5665 2477889999999888 778888888999999999999888877766544
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.1e-27 Score=232.74 Aligned_cols=245 Identities=20% Similarity=0.189 Sum_probs=149.5
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
..++.++..++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 345666666653 343332 57788888888887777777778888888888888777666677777778888888777
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCC-cCcccc-ccccCCCcCcEEecccCcCCCCCC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI-DSLVQLRNLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
.+++..+..|..+++|++|++++|.++...+..+.++++|+.|++++| .+.... ..+..+++|++|++++|.+++. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 777555556777777777777777777555556677777777777663 333332 3455566666666666665532 2
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -cccccccccEEECcCCcCcccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3445555555555555555322322 22555555555555555554455555555555555555555544444445555
Q ss_pred CCCEEECCCCcCC
Q 047097 315 NLSWLNMGINNLG 327 (443)
Q Consensus 315 ~L~~L~l~~n~l~ 327 (443)
+|+.|++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 5555555555443
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=4.7e-28 Score=243.66 Aligned_cols=290 Identities=25% Similarity=0.313 Sum_probs=239.0
Q ss_pred CCCCCCCCCCCceeeee--------eCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCC
Q 047097 52 TSSWNNSMNLCQWTGVI--------CGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDM 123 (443)
Q Consensus 52 ~~~w~~~~~~c~~~~~~--------c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 123 (443)
...|....++|.|.+.. |.. ..++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence 34577777888886532 322 35899999999998 5566555 89999999999998 5665 5789
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC
Q 047097 124 LEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++
T Consensus 83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD 150 (622)
T ss_dssp CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence 999999999998 5666 67999999999999984 554 67899999999999984 6654 48999999999
Q ss_pred CcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC
Q 047097 204 NILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 204 n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 283 (443)
|.+.+.+. ..++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|
T Consensus 151 N~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~ 217 (622)
T 3g06_A 151 NQLASLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLP 217 (622)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCC
T ss_pred CcCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccC
Confidence 99887654 34689999999999984 55 45789999999999998 5664 4689999999999998 555
Q ss_pred ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 284 VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.. +++|++|++++|++++ +| ..+++|+.|++++|.++.... .+++|+.|++++|.++ .+|..
T Consensus 218 ~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~N~L~-~lp~~ 279 (622)
T 3g06_A 218 AL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQLT-RLPES 279 (622)
T ss_dssp CC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCC-SCCGG
T ss_pred CC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeCCCCCCC-cCCHH
Confidence 43 4789999999999986 44 567899999999999975332 5689999999999999 88988
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccC
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVS 394 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 394 (443)
+..+ ++|+.|++++|.+++..|..+..+++
T Consensus 280 l~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 280 LIHL-SSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp GGGS-CTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred Hhhc-cccCEEEecCCCCCCcCHHHHHhccc
Confidence 8876 89999999999999998888776554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.1e-27 Score=229.76 Aligned_cols=245 Identities=20% Similarity=0.165 Sum_probs=174.7
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
..++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34666666665 3444443 68999999999999888888999999999999999998777788889999999999999
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCc-Ccccc-ccccCCCcCcEEecccCcCCCCCC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRI-DSLVQLRNLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
.++...+..|..+++|++|++++|.+....+..+.++++|+.|++++|. +.... ..+..+++|++|++++|.++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 9886655678888999999999998886666678888888888888743 33333 45666777777777777766 333
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+++..| ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 35566666666666666663323 3333666666666666666655566666666666666666666655555556666
Q ss_pred CCCEEECCCCcCC
Q 047097 315 NLSWLNMGINNLG 327 (443)
Q Consensus 315 ~L~~L~l~~n~l~ 327 (443)
+|+.|++++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 6666666666654
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.9e-30 Score=259.68 Aligned_cols=339 Identities=13% Similarity=0.078 Sum_probs=219.2
Q ss_pred CCCCCCEEECCCCcCccc----CCcccCCCCCCCEEEccCCcCCC----CCCccccCCCCCcEEecccccceeccCcccc
Q 047097 96 NLSFLRYINLANNGFLGE----IPPQIGRQDMLEGLVLSNNSFSG----TIPTNLSRCSNLIELFVDTNYLVGEIPAAIG 167 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 167 (443)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ .++..+.++++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344555555555544332 22223344555555555554431 122233345555555555555442 344455
Q ss_pred CCCCCcEEeccccccC---CCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCC
Q 047097 168 GLFKLERLFIFHNHIT---GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSL 243 (443)
Q Consensus 168 ~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L 243 (443)
.+++|+.|+++..... ...+..+..+++|+.++++++.....+..+..+++|++|++++|.+++... ..+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 5555555555432111 123344556666666666665444444566678888899998888654333 335778889
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCC-----------CcCccc-CCccccCCCCCCEEecccCcccccCCcccc
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNG-----------NNFTGS-IPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
++|+++ +.+.+.....+...+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+.
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 999888 4444333334444688899999983 455533 223345689999999988899887766666
Q ss_pred C-CCCCCEEECC----CCcCCCcCCCchhhhhhhcCCCCCCEEEccCCc--ccccCchhHHhhccCCCEEeCcCCcCccc
Q 047097 312 R-LKNLSWLNMG----INNLGTGTANELDFINLLTNCSKLERLYFNRNR--FEGELPHSVANLSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 312 ~-l~~L~~L~l~----~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 384 (443)
. +++|+.|+++ .|.+++... +..+...+.++++|++|++++|. +++..+..+...+++|+.|++++|++++.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~-~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPL-DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCC-HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred hhCCCCcEEEEeecCCCccccCchH-HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 5 8999999996 556655322 22334557779999999998654 77777777777668999999999999874
Q ss_pred -CchhhhcccCCCeecccccccccc-CchhccCCCCCCeeecccCcCccccCccc
Q 047097 385 -IPPEIRKLVSLNWLTIDRNQLTGT-IPPEIGELKNLQLLNLGGNFLQGSIPSSL 437 (443)
Q Consensus 385 -~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 437 (443)
++..+..+++|++|++++|.+++. ++.....+++|+.|++++|++++.....+
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 556678899999999999998865 44455679999999999999987744433
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.8e-27 Score=230.80 Aligned_cols=246 Identities=20% Similarity=0.181 Sum_probs=133.4
Q ss_pred CcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEeccc
Q 047097 148 LIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAF 226 (443)
Q Consensus 148 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~ 226 (443)
...++..+..++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.... ..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666665 4555443 57777777777777666667777777777777766666555 4555666666666666
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCccccc
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|+..+.++ ..+..+++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 6665444444555566666666666555 4444444455555555555532222222 2344455555555555554432
Q ss_pred CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
| .+..+ ++|++|++++|.+++..|..+..+ ++|+.|++++|++++..
T Consensus 212 -~-~~~~l------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 212 -P-NLTPL------------------------------VGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp -C-CCTTC------------------------------TTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEEC
T ss_pred -c-ccccc------------------------------ccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceEC
Confidence 1 23444 455555555555544444444433 44555555555555444
Q ss_pred chhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555555555555555555555333344455555555555555543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.1e-27 Score=217.04 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=191.6
Q ss_pred CEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCC
Q 047097 125 EGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 125 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|.
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------- 74 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA---------------- 74 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh----------------
Confidence 45666666665 445433 35666666666666654445555556666666655555544343
Q ss_pred cCccccccccCCCcCcEEecccCc-CCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC
Q 047097 205 ILWGRIDSLVQLRNLLLLDIAFNH-FSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 205 ~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 283 (443)
.+..+++|++|++++|. +....+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+
T Consensus 75 -------~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 75 -------AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp -------TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -------hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCH
Confidence 44455666666666665 555557778889999999999999984 444444488999999999999987666
Q ss_pred ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 284 VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP------HAFRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH------hHccCcccccEeeCCCCcCCcCCHHH
Confidence 778899999999999999987777778899999999999999987766 66788899999999999998544444
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccC--CCCCCeeecccC
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGE--LKNLQLLNLGGN 427 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~--l~~L~~L~l~~n 427 (443)
+..+ ++|+.|++++|.+.+..+.. .-...++.+....+.+....|+.+.+ +..++..++.||
T Consensus 221 ~~~l-~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 221 LAPL-RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HTTC-TTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccC-cccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 5554 88999999999887543321 12234556667788888888887754 445556666665
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.5e-27 Score=229.48 Aligned_cols=246 Identities=17% Similarity=0.208 Sum_probs=146.2
Q ss_pred CcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEeccc
Q 047097 148 LIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAF 226 (443)
Q Consensus 148 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~ 226 (443)
...++..+..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+.... ..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666666 5565544 57777888877777666677777777777777777766655 5666677777777777
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccC-CccccCCCCCCEEecccCccccc
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 7766544455666666777777776666 455444446666666666664332233 3345566666666666666652
Q ss_pred CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 306 VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
+| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|++++..
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRP------GSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCCC
T ss_pred cc-ccCCCcccCEEECCCCccCccCh------hhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCccC
Confidence 22 24555566666666665555444 345555555555555555554444333332 45555555555555444
Q ss_pred chhhhcccCCCeecccccccc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~ 406 (443)
+..+..+++|+.|++++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 444555555555555555543
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.7e-30 Score=238.33 Aligned_cols=266 Identities=18% Similarity=0.176 Sum_probs=154.2
Q ss_pred CCCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCc-ccCCcccC-------CCCC
Q 047097 52 TSSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFL-GEIPPQIG-------RQDM 123 (443)
Q Consensus 52 ~~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~-------~l~~ 123 (443)
...|.....|+.+..+.......+++.+++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 34565555555544433222224566677777777 455544443 777788877773 34555554 6777
Q ss_pred CCEEEccCCcCCCCCCccc--cCCCCCcEEecccccceeccCccccCC-----CCCcEEeccccccCCCCCccccCCCCC
Q 047097 124 LEGLVLSNNSFSGTIPTNL--SRCSNLIELFVDTNYLVGEIPAAIGGL-----FKLERLFIFHNHITGQLPASIGNLSSL 196 (443)
Q Consensus 124 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L 196 (443)
|++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..++++++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 8888888888777777765 7777888888888877755 6666655 777777777777776666777777777
Q ss_pred CEEEccCCcCccc---cccc--cCCCcCcEEecccCcCCC--CCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCc
Q 047097 197 LAFDVRENILWGR---IDSL--VQLRNLLLLDIAFNHFSG--TIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNL 268 (443)
Q Consensus 197 ~~L~l~~n~~~~~---~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 268 (443)
++|++++|.+.+. +..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..|...+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 7777777765443 1222 555666666666665552 111 1223445555555555555543333322234555
Q ss_pred cEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCC
Q 047097 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 269 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 55555555555 4444433 4555555555555433 22 444444555555444443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-29 Score=233.61 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=123.8
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCc
Q 047097 126 GLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205 (443)
Q Consensus 126 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 205 (443)
..+++.+.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34444444443333334445566666666666665545556666666666666666653332 5555555555555555
Q ss_pred CccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCcc
Q 047097 206 LWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVS 285 (443)
Q Consensus 206 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 285 (443)
+.+.+ ..++|++|++++|.+++..+ . .+++|++|++++|.+++..+..
T Consensus 92 l~~l~----~~~~L~~L~l~~n~l~~~~~-------------------------~---~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANNNISRVSC-------------------------S---RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp EEEEE----ECTTCCEEECCSSCCSEEEE-------------------------C---CCSSCEEEECCSSCCCSGGGBC
T ss_pred ccccc----CCCCcCEEECCCCccCCcCc-------------------------c---ccCCCCEEECCCCCCCCccchh
Confidence 44322 12444555555544442221 1 2344455555555544433444
Q ss_pred ccCCCCCCEEecccCcccccCCccc-cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhH
Q 047097 286 LSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSV 364 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 364 (443)
+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++... ...+++|++|++++|.++ .+|..+
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~l~~L~~L~Ls~N~l~-~l~~~~ 210 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--------QVVFAKLKTLDLSSNKLA-FMGPEF 210 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--------CCCCTTCCEEECCSSCCC-EECGGG
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--------ccccccCCEEECCCCcCC-cchhhh
Confidence 4444555555555555544433333 234455555555554443311 112445555555555555 233333
Q ss_pred HhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc-ccCchhccCCCCCCeeecc
Q 047097 365 ANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT-GTIPPEIGELKNLQLLNLG 425 (443)
Q Consensus 365 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~ 425 (443)
..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.++++
T Consensus 211 ~~l-~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 211 QSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGG-TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccc-CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 332 44555555555555 34444555555555555555555 4444555555555555555
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.8e-29 Score=233.66 Aligned_cols=208 Identities=19% Similarity=0.249 Sum_probs=158.0
Q ss_pred CCCcCcEEecccCcCCCCCChhh--hCCCCCcEEEcccCCCCccCchhhhcCC-----CCccEEeCCCCcCcccCCcccc
Q 047097 215 QLRNLLLLDIAFNHFSGTIPPPI--FNISSLEVISLSENRFTGSLPVDTGVNL-----PNLRQLSPNGNNFTGSIPVSLS 287 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~l~ 287 (443)
.+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+. .+ ++|++|++++|++++..+..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 46777777777777777777765 6778888888888888744 54433 33 7888888888888877777888
Q ss_pred CCCCCCEEecccCccccc--CCccc--cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 288 NASRLEMIEFSRNQFSGR--VSVDF--SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 288 ~~~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++... .....+..+++|++|++++|.+++..|..
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG---VCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---HHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH---HHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 888888888888887654 22333 788899999999988863211 01134467789999999999998766543
Q ss_pred HHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccc
Q 047097 364 VANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGS 432 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
.+...++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 3333478999999999998 7787776 8899999999999944 76 88999999999999999864
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4e-28 Score=226.37 Aligned_cols=218 Identities=17% Similarity=0.125 Sum_probs=126.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 345566666666655555555566677777777777776666677777777777777777764333 666777777777
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++..
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~--------------------------~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS--------------------------RGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC--------------------------CCSSCEEEECCSSCCCSGG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc--------------------------ccCCCCEEECCCCCCCCcc
Confidence 777665321 225566666666555432211 2345666666666666544
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+..+..+++|++|++++|.+.+..+..+...+++|++|++++|.+++. +. ...+++|++|++++|++++..+ .+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhccc
Confidence 445555666666666666666433333333456666666666666532 21 2235556666666665553322 24455
Q ss_pred CCCCEEECCCCcCC
Q 047097 314 KNLSWLNMGINNLG 327 (443)
Q Consensus 314 ~~L~~L~l~~n~l~ 327 (443)
++|+.|++++|.++
T Consensus 214 ~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 214 AGVTWISLRNNKLV 227 (317)
T ss_dssp TTCSEEECTTSCCC
T ss_pred CcccEEECcCCccc
Confidence 55555555555544
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-25 Score=204.40 Aligned_cols=215 Identities=18% Similarity=0.220 Sum_probs=149.3
Q ss_pred CCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCC
Q 047097 59 MNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTI 138 (443)
Q Consensus 59 ~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 138 (443)
.+.|.|.|+.|.-. ...+.++++++.++. +|..+. +++++|++++|.+++..+.+|+++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999988643 456789999999875 454443 68999999999998776778999999999999999998555
Q ss_pred CccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCC
Q 047097 139 PTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR 217 (443)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~ 217 (443)
+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...+ ..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 556788999999999999888666667788888888888888888666666677777777777766665554 3355555
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcC
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 278 (443)
+|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 5555555555555443334445555555555555554 33333333444444444444443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4e-27 Score=232.09 Aligned_cols=234 Identities=18% Similarity=0.188 Sum_probs=131.8
Q ss_pred CCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEeccc
Q 047097 147 NLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAF 226 (443)
Q Consensus 147 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~ 226 (443)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++ |++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-----------------------L~~L~Ls~ 89 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST-----------------------LRTLDLNN 89 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTT-----------------------CCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCC-----------------------CCEEEecC
Confidence 55555555555554444555555555555555555543332 444444 44444444
Q ss_pred CcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC
Q 047097 227 NHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306 (443)
Q Consensus 227 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 306 (443)
|.+++.. ..++|++|++++|.+.+ ++.. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 90 N~l~~l~-----~~~~L~~L~L~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 90 NYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CcCCCCC-----CCCCcCEEECcCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 4444211 12555666666665552 2221 3455666666666666555555666666666666666666655
Q ss_pred Ccccc-CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccC
Q 047097 307 SVDFS-RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 307 ~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 385 (443)
|..+. .+++|+.|++++|.+++..+ ...+++|++|++++|.+++ +|..+..+ ++|+.|++++|.+++ +
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l-~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--------QVVFAKLKTLDLSSNKLAF-MGPEFQSA-AGVTWISLRNNKLVL-I 229 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--------CCCCTTCCEEECCSSCCCE-ECGGGGGG-TTCSEEECTTSCCCE-E
T ss_pred hHHHhhhCCcccEEecCCCccccccc--------cccCCCCCEEECCCCCCCC-CCHhHcCC-CCccEEEecCCcCcc-c
Confidence 55554 56666666666666654422 2245666666666666663 33334443 566666666666663 5
Q ss_pred chhhhcccCCCeecccccccc-ccCchhccCCCCCCeeecc
Q 047097 386 PPEIRKLVSLNWLTIDRNQLT-GTIPPEIGELKNLQLLNLG 425 (443)
Q Consensus 386 ~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~ 425 (443)
|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 556666666666666666666 4556666666666666664
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.5e-28 Score=247.69 Aligned_cols=345 Identities=12% Similarity=0.028 Sum_probs=257.2
Q ss_pred CcEEEEEcCCCCCcee----cCccccCCCCCCEEECCCCcCc----ccCCcccCCCCCCCEEEccCCcCCCCCCccccCC
Q 047097 74 QRVTRLDLRNQSIGGT----LSPYVGNLSFLRYINLANNGFL----GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRC 145 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 145 (443)
+.+++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 5688899998877655 3334567899999999999987 3455567789999999999999884 77888999
Q ss_pred CCCcEEecccccce---eccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc--ccccCCCcCc
Q 047097 146 SNLIELFVDTNYLV---GEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLL 220 (443)
Q Consensus 146 ~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~l~~l~~L~ 220 (443)
++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.... ..+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 99999999864322 23445678889999999988643 367788889999999999999865544 4468899999
Q ss_pred EEecccCcCCCCCChhhhCCCCCcEEEccc-----------CCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccC-
Q 047097 221 LLDIAFNHFSGTIPPPIFNISSLEVISLSE-----------NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN- 288 (443)
Q Consensus 221 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~- 288 (443)
+|+++++...+.++.....+++|++|++++ +.+++.....+...+++|++|++..+.+++..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 999994332333444456789999999993 45553333333446899999999999998776666665
Q ss_pred CCCCCEEecc----cCccccc-----CCccccCCCCCCEEECCCCc--CCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 289 ASRLEMIEFS----RNQFSGR-----VSVDFSRLKNLSWLNMGINN--LGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 289 ~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
+++|++|+++ .|.+++. ++..+..+++|++|+++.+. +++.. +......+++|++|++++|+++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-----~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-----LSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-----HHHHHHSCTTCCEEEECSCCSS
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH-----HHHHHHhCccceEeeccCCCCC
Confidence 8999999997 5677653 33336679999999997643 43322 1233345899999999999998
Q ss_pred ccCchhHHhhccCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCchhc-cCCCCCCeeecc
Q 047097 358 GELPHSVANLSSTIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIPPEI-GELKNLQLLNLG 425 (443)
Q Consensus 358 ~~~p~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~ 425 (443)
+.....+...+++|+.|++++|.+++. ++..+..+++|+.|++++|++++.....+ ..+|.+....+.
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 644444444458999999999998865 44556789999999999999986644444 356666554443
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=8.5e-29 Score=251.25 Aligned_cols=359 Identities=11% Similarity=0.112 Sum_probs=232.2
Q ss_pred CcEEEEEcCCCCCceecCcccc-CCCCCCEEECCCC-cCccc-CCcccCCCCCCCEEEccCCcCCCCCCccc----cCCC
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVG-NLSFLRYINLANN-GFLGE-IPPQIGRQDMLEGLVLSNNSFSGTIPTNL----SRCS 146 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l~ 146 (443)
+++++|+++++.+++..+..+. .+++|++|++++| .+++. ++..+.++++|++|++++|.+.+..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677778877777665555554 5777888888777 44432 33444467778888888777665444333 3556
Q ss_pred CCcEEeccccc--cee-ccCccccCCCCCcEEecccc-ccCCCCCccccCCCCCCEEEccCCcC----------------
Q 047097 147 NLIELFVDTNY--LVG-EIPAAIGGLFKLERLFIFHN-HITGQLPASIGNLSSLLAFDVRENIL---------------- 206 (443)
Q Consensus 147 ~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~---------------- 206 (443)
+|++|++++|. +.. .++..+..+++|++|++++| .+. .++..+..+++|++|++..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 77888877775 221 11122344677777777776 333 2455556666666666543311
Q ss_pred ----------c-----cccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccE
Q 047097 207 ----------W-----GRIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQ 270 (443)
Q Consensus 207 ----------~-----~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 270 (443)
. ..+..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 0 011222256778888888887653322 22456788888888877 432222233335788888
Q ss_pred EeCCC---------CcCcccCCccc-cCCCCCCEEecccCcccccCCcccc-CCCCCCEEECC--C----CcCCCcCCCc
Q 047097 271 LSPNG---------NNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFS-RLKNLSWLNMG--I----NNLGTGTANE 333 (443)
Q Consensus 271 L~l~~---------n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~~~ 333 (443)
|++.+ +.+++.....+ ..+++|++|.+..|.+++.....+. .+++|+.|+++ + +.++... .+
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-~~ 421 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-LD 421 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC-TH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc-hh
Confidence 88833 34443222223 3478899998888888776555554 58899999998 3 3443221 12
Q ss_pred hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhh-hcccCCCeeccccccccccCch-
Q 047097 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEI-RKLVSLNWLTIDRNQLTGTIPP- 411 (443)
Q Consensus 334 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~- 411 (443)
..+...+..+++|++|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+.
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 23334567889999999987 77766666676656889999999999987666555 7799999999999999765554
Q ss_pred hccCCCCCCeeecccCcCccccCcc
Q 047097 412 EIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
....+++|+.|++++|+++....+.
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHH
Confidence 3456899999999999996554433
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-26 Score=225.54 Aligned_cols=219 Identities=18% Similarity=0.129 Sum_probs=119.1
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|++++|.+++..|..|+.+++|++|++++|.+.+..| +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 44467777777777776666677777777777777777765443 667777777777777766322 12566666
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+++..+. .+ ++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 105 ~L~~N~l~~~~~~---~l-----------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 105 HAANNNISRVSCS---RG-----------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp ECCSSCCCCEEEC---CC-----------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred ECcCCcCCCCCcc---cc-----------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 6666666543221 12 344555555555554444444555555555555555554
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchh
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
..|..+...+++|+.|++++|.+++. +. ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp----- 230 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE----- 230 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEEC-----
T ss_pred cChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccc-----
Confidence 34433333445555555555555533 11 2235555555555555554322 2445555555555555554321
Q ss_pred hhhhhcCCCCCCEEEccCCccc
Q 047097 336 FINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 336 ~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
..+..+++|+.|++++|++.
T Consensus 231 --~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 --KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --TTCCCCTTCCEEECTTCCBC
T ss_pred --hhhccCCCCCEEEcCCCCCc
Confidence 22444455555555555554
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.8e-24 Score=197.62 Aligned_cols=207 Identities=20% Similarity=0.182 Sum_probs=121.5
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEec
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 177 (443)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46778888888777666667777777888888777777555566777777777777777777666666777777777777
Q ss_pred cccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
++|.+.+..+..+..+++|++|++++|.+... .+|..+..+++|++|++++|.+++ +
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~-~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQS-I 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCE-E
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCc-C
Confidence 77776654444555555555555555544331 134444444555555555555442 2
Q ss_pred chhhhcCCCCcc----EEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCC
Q 047097 258 PVDTGVNLPNLR----QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 258 ~~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
+...+..+++++ .|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 211111223333 55555555553333222 22356666666666655444445566666666666666654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.5e-24 Score=196.68 Aligned_cols=208 Identities=22% Similarity=0.243 Sum_probs=116.6
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEec
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 3455555555554443444555555555555555554 333333335555666666666555544455556666666666
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCcCCCcC-CCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCC----
Q 047097 298 SRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGT-ANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIK---- 372 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~---- 372 (443)
++|.+.+..+..+..+++|++|++++|.+++.. + ..+..+++|++|++++|++++..+..+..+ +.|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l 180 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNL 180 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC------GGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCc------hhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccce
Confidence 666665544445566666666666666655432 3 445556666666666666664444444443 4444
Q ss_pred EEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccC
Q 047097 373 QIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIP 434 (443)
Q Consensus 373 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
.|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 181 ~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66666776664333333 33467777777777664444445666777777777777765554
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.5e-27 Score=239.40 Aligned_cols=354 Identities=14% Similarity=0.090 Sum_probs=226.6
Q ss_pred CcEEEEEcCCCCCcee---cC------------ccccCCCCCCEEECCCCcCcccCCcccC-CCCCCCEEEccCC-cCCC
Q 047097 74 QRVTRLDLRNQSIGGT---LS------------PYVGNLSFLRYINLANNGFLGEIPPQIG-RQDMLEGLVLSNN-SFSG 136 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~---~~------------~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n-~l~~ 136 (443)
++++.|+++++..... .| .....+++|++|++++|.+++..+..+. .+++|++|++++| .+.+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 5678888887642211 11 1124678999999999988876666665 6889999999988 4443
Q ss_pred C-CCccccCCCCCcEEecccccceeccCcccc----CCCCCcEEeccccc--cCCC-CCccccCCCCCCEEEccCC-cCc
Q 047097 137 T-IPTNLSRCSNLIELFVDTNYLVGEIPAAIG----GLFKLERLFIFHNH--ITGQ-LPASIGNLSSLLAFDVREN-ILW 207 (443)
Q Consensus 137 ~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n-~~~ 207 (443)
. ++..+.++++|++|++++|.+++..+..+. .+++|+.|++++|. ++.. ++....++++|+.|++++| .+.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 344455789999999999988765444443 67799999999886 2211 1122345799999999988 333
Q ss_pred cccccccCCCcCcEEecccCcC--------------------------C----CCCChhhhCCCCCcEEEcccCCCCccC
Q 047097 208 GRIDSLVQLRNLLLLDIAFNHF--------------------------S----GTIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~--------------------------~----~~~~~~l~~~~~L~~L~l~~n~~~~~~ 257 (443)
+.+..+..+++|++|+++.+.. . +.++..+..+++|++|++++|.+.+..
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 3335566777888887654421 1 112222334567777777777655433
Q ss_pred chhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEeccc---------CcccccCCcccc-CCCCCCEEECCCCcC
Q 047097 258 PVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSR---------NQFSGRVSVDFS-RLKNLSWLNMGINNL 326 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~l~~n~l 326 (443)
...+...+++|++|++.+| ++. .++.....+++|++|++.+ +.+++.....+. .+++|+.|.++.+.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 3333346677777777766 331 2222233467777777733 344433222232 367777777766666
Q ss_pred CCcCCCchhhhhhhcCCCCCCEEEcc--C----CcccccCch-----hHHhhccCCCEEeCcCCcCcccCchhhhc-ccC
Q 047097 327 GTGTANELDFINLLTNCSKLERLYFN--R----NRFEGELPH-----SVANLSSTIKQIAMGRNRISGTIPPEIRK-LVS 394 (443)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~L~~L~Ls--~----n~l~~~~p~-----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~ 394 (443)
++... ......+++|+.|+++ + +.+++ .|. .+...+++|+.|++++ .+++..+..+.. +++
T Consensus 385 ~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 385 TNAAL-----ITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp CHHHH-----HHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred CHHHH-----HHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 54222 1222357889999998 3 45552 211 1223347899999977 677666666665 889
Q ss_pred CCeeccccccccccCchhc-cCCCCCCeeecccCcCccccCc
Q 047097 395 LNWLTIDRNQLTGTIPPEI-GELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 395 L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
|+.|++++|.+++..+..+ ..+++|+.|++++|++++..+.
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 9999999999987666665 6789999999999999765443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.5e-24 Score=196.17 Aligned_cols=224 Identities=17% Similarity=0.232 Sum_probs=122.4
Q ss_pred EEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
.+++..+.+.+. .....+++|+.|++.+|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence 344444444322 2344566666666666665433 3355566666666666666532 3555666666666666666
Q ss_pred CccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
+ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 98 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 174 (272)
T 3rfs_A 98 Q-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-- 174 (272)
T ss_dssp C-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred C-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH--
Confidence 5 3443333355666666666666665444455566666666666666665555445556666666666666554443
Q ss_pred hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhc
Q 047097 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI 413 (443)
Q Consensus 334 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 413 (443)
..+..+++|++|++++|++++..|..+..+ ++|+.|++++|.+.+. +++|+.+++..|.++|.+|..+
T Consensus 175 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 175 ----GVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred ----HHhcCCccCCEEECCCCcCCccCHHHHhCC-cCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 334555566666666666554333333332 5555555555555422 3345555555555555555555
Q ss_pred cCCC
Q 047097 414 GELK 417 (443)
Q Consensus 414 ~~l~ 417 (443)
+.++
T Consensus 243 ~~~~ 246 (272)
T 3rfs_A 243 GSVA 246 (272)
T ss_dssp SCBC
T ss_pred cccC
Confidence 4443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8e-23 Score=185.97 Aligned_cols=200 Identities=22% Similarity=0.253 Sum_probs=90.4
Q ss_pred CCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccc
Q 047097 100 LRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH 179 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 179 (443)
.++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455555555554 3343222 3455555555555433333444445555555544444422222333444444444444
Q ss_pred cccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCch
Q 047097 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 180 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 259 (443)
|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|.
T Consensus 95 n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 150 (270)
T 2o6q_A 95 NKLQALPI-----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150 (270)
T ss_dssp SCCCCCCT-----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CcCCcCCH-----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCH
Confidence 44332222 22333444444444444444443444445555555555555554 3333
Q ss_pred hhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 260 DTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 260 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 3333445555555555555433333344445555555555544443333344444444444444443
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=3.3e-25 Score=210.59 Aligned_cols=261 Identities=12% Similarity=0.151 Sum_probs=138.9
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEecccccceeccC----ccccCCC-CCcEEeccccccCCCCCccccCCCCCCEEEc
Q 047097 127 LVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIP----AAIGGLF-KLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 127 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 4556666665555555555556666666666654433 4445555 55555555555554433333321
Q ss_pred cCCcCccccccccCC-CcCcEEecccCcCCCCCChhh----hCC-CCCcEEEcccCCCCccCchhhh---cC-CCCccEE
Q 047097 202 RENILWGRIDSLVQL-RNLLLLDIAFNHFSGTIPPPI----FNI-SSLEVISLSENRFTGSLPVDTG---VN-LPNLRQL 271 (443)
Q Consensus 202 ~~n~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l----~~~-~~L~~L~l~~n~~~~~~~~~~~---~~-~~~L~~L 271 (443)
+... ++|++|++++|.+++..+..+ ... ++|++|++++|.+++..+..+. .. .++|++|
T Consensus 75 -----------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 75 -----------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp -----------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred -----------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 1111 455555555555554443322 223 5666666666666533322221 12 2466666
Q ss_pred eCCCCcCcccC----CccccCCC-CCCEEecccCcccccCCccc----cCC-CCCCEEECCCCcCCCcCCCchhhhhhhc
Q 047097 272 SPNGNNFTGSI----PVSLSNAS-RLEMIEFSRNQFSGRVSVDF----SRL-KNLSWLNMGINNLGTGTANELDFINLLT 341 (443)
Q Consensus 272 ~l~~n~l~~~~----~~~l~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 341 (443)
++++|.+++.. +..+...+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.++.... ..++..+.
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~--~~l~~~l~ 221 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY--AELAYIFS 221 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHH
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH--HHHHHHHh
Confidence 66666665322 22333443 67777777777765544332 334 477777777777654332 11223444
Q ss_pred C-CCCCCEEEccCCcccccCchhHHh---hccCCCEEeCcCCcCccc-------CchhhhcccCCCeecccccccccc
Q 047097 342 N-CSKLERLYFNRNRFEGELPHSVAN---LSSTIKQIAMGRNRISGT-------IPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 342 ~-~~~L~~L~Ls~n~l~~~~p~~~~~---~~~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
. .++|++|++++|.+++..+..+.. ..++|+.|++++|.+.+. ++..+..+++|+.|++++|++.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 347777777777777554433322 235677777777764322 223455666677777777776654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2e-23 Score=190.08 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=127.8
Q ss_pred ccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcE
Q 047097 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEV 245 (443)
Q Consensus 166 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 245 (443)
+..+++|+.|++++|.+.. ...+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4455666666666666552 23456666666666666666543 35556666666666666666555555566666666
Q ss_pred EEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 246 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 114 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 666666666 4444433356666666666666665555555666666666666666665555555666666666666666
Q ss_pred CCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 326 l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
+++..+ ..+..+++|++|++++|++.+.. +.++.+++..|.++|.+|.+++.+.
T Consensus 193 l~~~~~------~~~~~l~~L~~L~l~~N~~~~~~--------~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSVPD------GVFDRLTSLQYIWLHDNPWDCTC--------PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCCCT------TTTTTCTTCCEEECCSSCBCCCT--------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCH------HHHhCCcCCCEEEccCCCccccC--------cHHHHHHHHHHhCCCcccCcccccC
Confidence 665544 44556666666666666665432 3455566666666666666665544
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8.6e-23 Score=187.46 Aligned_cols=200 Identities=25% Similarity=0.220 Sum_probs=95.7
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCc
Q 047097 94 VGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 173 (443)
+.+++++++++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 445555666666666555 3443332 455666666666554445555556666666666665553222 14555555
Q ss_pred EEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCC
Q 047097 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENR 252 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 252 (443)
+|++++|.++ .+|..+..+++|+.|++++|.+...+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555555 44444444444444444444444433 334444444444444444443333333444444444444444
Q ss_pred CCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCc
Q 047097 253 FTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301 (443)
Q Consensus 253 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 301 (443)
++ .+|...+..+++|++|++++|.++ .+|..+...++|+.+++++|.
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 44 333333333444444444444444 333333333344444444443
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=6.3e-25 Score=206.63 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=124.3
Q ss_pred CcEEecccccceeccCccccCC--CCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccc-c-ccccCCCcCcEEe
Q 047097 148 LIELFVDTNYLVGEIPAAIGGL--FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR-I-DSLVQLRNLLLLD 223 (443)
Q Consensus 148 L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~-~~l~~l~~L~~L~ 223 (443)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+... . ..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566666666554 3344444 5666666666666644333 33455555555555544332 1 3344444555555
Q ss_pred cccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc-cCCccccCCCCCCEEecccC-c
Q 047097 224 IAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRN-Q 301 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n-~ 301 (443)
+++|.+++..+..+..+++|++|++++|. .+++ .++..+..+++|++|++++| .
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~------------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCS------------------------GFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCB------------------------SCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCC------------------------CCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 55554444444444444444444444441 3332 13333444555555555555 4
Q ss_pred cccc-CCccccCCC-CCCEEECCCCc--CCCcCCCchhhhhhhcCCCCCCEEEccCCc-ccccCchhHHhhccCCCEEeC
Q 047097 302 FSGR-VSVDFSRLK-NLSWLNMGINN--LGTGTANELDFINLLTNCSKLERLYFNRNR-FEGELPHSVANLSSTIKQIAM 376 (443)
Q Consensus 302 l~~~-~~~~~~~l~-~L~~L~l~~n~--l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~~~~L~~L~l 376 (443)
+++. ++..+..++ +|++|++++|. ++. ..++..+..+++|++|++++|. +++..+..+..+ ++|+.|++
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l 254 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQK-----SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSL 254 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEEC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCH-----HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC-CCCCEeeC
Confidence 4432 233344455 55555555552 221 1122344455566666666665 444445445443 55666666
Q ss_pred cCCc-CcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcccc
Q 047097 377 GRNR-ISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLG 438 (443)
Q Consensus 377 ~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 438 (443)
++|. ++......+..+++|+.|++++| ++......+. ..++.|++++|++++..|..++
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 6653 32222234555666666666666 3322222221 1244455666666666665544
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=2.6e-24 Score=199.97 Aligned_cols=229 Identities=16% Similarity=0.178 Sum_probs=176.0
Q ss_pred CCCEEEccCCcCcccc----ccccCCCcCcEEecccCcCCCCCChhh--hCCCCCcEEEcccCCCCccCc----hhhhcC
Q 047097 195 SLLAFDVRENILWGRI----DSLVQLRNLLLLDIAFNHFSGTIPPPI--FNISSLEVISLSENRFTGSLP----VDTGVN 264 (443)
Q Consensus 195 ~L~~L~l~~n~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~----~~~~~~ 264 (443)
.++.+.+.++.+.... ..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ .... .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 3455555555443322 122344668999999999888888877 788999999999999886544 2223 6
Q ss_pred CCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccccc--C--CccccCCCCCCEEECCCCcCCCcCCCchhhhhhh
Q 047097 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR--V--SVDFSRLKNLSWLNMGINNLGTGTANELDFINLL 340 (443)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 340 (443)
+++|++|++++|.+++..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++.... .....+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~ 220 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG---VCAALA 220 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH---HHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH---HHHHHH
Confidence 88999999999999877788889999999999999987652 1 2334688999999999998864221 001135
Q ss_pred cCCCCCCEEEccCCcccccCchhHHhhc--cCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCC
Q 047097 341 TNCSKLERLYFNRNRFEGELPHSVANLS--STIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKN 418 (443)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 418 (443)
..+++|++|++++|.+++..|..+.... ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|. +..+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch-hhhCCC
Confidence 6789999999999999987787666542 68999999999999 7787774 89999999999999 4454 678899
Q ss_pred CCeeecccCcCccc
Q 047097 419 LQLLNLGGNFLQGS 432 (443)
Q Consensus 419 L~~L~l~~n~l~~~ 432 (443)
|+.|++++|++++.
T Consensus 296 L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 296 VDNLTLDGNPFLVP 309 (310)
T ss_dssp CSCEECSSTTTSCC
T ss_pred ccEEECcCCCCCCC
Confidence 99999999999853
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.7e-22 Score=185.54 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=120.2
Q ss_pred ccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCC
Q 047097 117 QIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSL 196 (443)
Q Consensus 117 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 196 (443)
.+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +.. +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence 3567788888999888887 5666554 6788888888888877777888888888888888887743 222 556666
Q ss_pred CEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC
Q 047097 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 197 ~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
+.|++++|.+...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC
Confidence 6666666666554444555555555555555555444444555555555555555555 344443334555555555555
Q ss_pred cCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 277 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 554333333344455555555555544 2333333344444444444443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4.9e-25 Score=211.40 Aligned_cols=245 Identities=15% Similarity=0.168 Sum_probs=118.5
Q ss_pred ccCccccCCCCCcEEeccccccCCCCC----ccccCCCCCCEEEccCCcCccc----c-------ccccCCCcCcEEecc
Q 047097 161 EIPAAIGGLFKLERLFIFHNHITGQLP----ASIGNLSSLLAFDVRENILWGR----I-------DSLVQLRNLLLLDIA 225 (443)
Q Consensus 161 ~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~----~-------~~l~~l~~L~~L~l~ 225 (443)
.++..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+... + ..+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455667777788888888887765433 3355677777777777543321 1 123455666666666
Q ss_pred cCcCCC----CCChhhhCCCCCcEEEcccCCCCccCchhhhc---CC---------CCccEEeCCCCcCc-ccCC---cc
Q 047097 226 FNHFSG----TIPPPIFNISSLEVISLSENRFTGSLPVDTGV---NL---------PNLRQLSPNGNNFT-GSIP---VS 285 (443)
Q Consensus 226 ~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---~~---------~~L~~L~l~~n~l~-~~~~---~~ 285 (443)
+|.+++ .++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|.++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666654 24445555666666666666654222221110 11 55555555555554 2222 23
Q ss_pred ccCCCCCCEEecccCcccc-----cCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc-
Q 047097 286 LSNASRLEMIEFSRNQFSG-----RVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE- 359 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~- 359 (443)
+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++... ...++..+..+++|++|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 3445555555555555542 12223444555555555555443110 011223344445555555555554433
Q ss_pred ---CchhHHh-hccCCCEEeCcCCcCcc----cCchhh-hcccCCCeeccccccccc
Q 047097 360 ---LPHSVAN-LSSTIKQIAMGRNRISG----TIPPEI-RKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 360 ---~p~~~~~-~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~ 407 (443)
++..+.. ..++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 1222111 02344444444444443 244433 334444444444444443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.1e-22 Score=182.88 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=146.2
Q ss_pred CCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCC
Q 047097 60 NLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP 139 (443)
Q Consensus 60 ~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 139 (443)
+|+.|.|..|.. ..+.++++++.++. +|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577899999963 34578999998874 444444 689999999999998888889999999999999999998778
Q ss_pred ccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCc
Q 047097 140 TNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRN 218 (443)
Q Consensus 140 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~ 218 (443)
..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...+ ..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88899999999999999998766677888889999999998888665556677777777777777776665 35666666
Q ss_pred CcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 219 LLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6777776666665555556666666666666666653
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.7e-24 Score=205.61 Aligned_cols=269 Identities=12% Similarity=0.136 Sum_probs=151.2
Q ss_pred EEcCCCCCceecCccccCCCCCCEEECCCCcCcccCC----cccCCCC-CCCEEEccCCcCCCCCCccccCC-----CCC
Q 047097 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIP----PQIGRQD-MLEGLVLSNNSFSGTIPTNLSRC-----SNL 148 (443)
Q Consensus 79 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 148 (443)
.+++.+.+++.+|..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666655555557777777777665444 5566666 67777777776665555555443 666
Q ss_pred cEEecccccceeccCcc----ccCC-CCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccC-CCcCcEE
Q 047097 149 IELFVDTNYLVGEIPAA----IGGL-FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQ-LRNLLLL 222 (443)
Q Consensus 149 ~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~-l~~L~~L 222 (443)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.. .+.. .++|++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------~l~~~~~~L~~L 143 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-------------------AFSNLPASITSL 143 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH-------------------HHTTSCTTCCEE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH-------------------HHHhCCCceeEE
Confidence 66666666665444332 2233 55666666666555433322211 1222 1355555
Q ss_pred ecccCcCCCCCC----hhhhCCC-CCcEEEcccCCCCccCchhhh---cCC-CCccEEeCCCCcCccc----CCccccC-
Q 047097 223 DIAFNHFSGTIP----PPIFNIS-SLEVISLSENRFTGSLPVDTG---VNL-PNLRQLSPNGNNFTGS----IPVSLSN- 288 (443)
Q Consensus 223 ~l~~n~~~~~~~----~~l~~~~-~L~~L~l~~n~~~~~~~~~~~---~~~-~~L~~L~l~~n~l~~~----~~~~l~~- 288 (443)
++++|.+++..+ ..+...+ +|++|++++|.+++..+..+. ... ++|++|++++|.+++. ++..+..
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 555555543222 2223333 666666666666533332211 123 4666666666666532 3333433
Q ss_pred CCCCCEEecccCcccccCC----ccccCCCCCCEEECCCCcCCCcCCCc-hhhhhhhcCCCCCCEEEccCCcccccCchh
Q 047097 289 ASRLEMIEFSRNQFSGRVS----VDFSRLKNLSWLNMGINNLGTGTANE-LDFINLLTNCSKLERLYFNRNRFEGELPHS 363 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 363 (443)
.++|++|++++|.+++..+ ..+..+++|+.|++++|.+....... ..+...+..+++|+.|++++|++.+..+..
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 3467777777777765433 23456677888888777754443321 123345667788888999999888766655
Q ss_pred HHh
Q 047097 364 VAN 366 (443)
Q Consensus 364 ~~~ 366 (443)
+..
T Consensus 304 ~~~ 306 (362)
T 3goz_A 304 ISN 306 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.1e-24 Score=201.05 Aligned_cols=255 Identities=13% Similarity=0.157 Sum_probs=159.7
Q ss_pred CCEEECCCCcCcccCCcccCCC--CCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceec-cCccccCCCCCcEEe
Q 047097 100 LRYINLANNGFLGEIPPQIGRQ--DMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGE-IPAAIGGLFKLERLF 176 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~ 176 (443)
++.++++++.+. +..+..+ +.+++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 778999988876 4556666 7899999999988866555 55788889999988887754 666777888888888
Q ss_pred ccccccCCCCCccccCCCCCCEEEccCC-cCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccC-CCC
Q 047097 177 IFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSEN-RFT 254 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~~~ 254 (443)
+++|.+++..+..++.+++|++|++++| .+... .++..+..+++|++|++++| .++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCCcC
Confidence 8888777666666666666666666665 33321 12333444555555555555 554
Q ss_pred cc-CchhhhcCCC-CccEEeCCCC--cCc-ccCCccccCCCCCCEEecccCc-ccccCCccccCCCCCCEEECCCCcCCC
Q 047097 255 GS-LPVDTGVNLP-NLRQLSPNGN--NFT-GSIPVSLSNASRLEMIEFSRNQ-FSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 255 ~~-~~~~~~~~~~-~L~~L~l~~n--~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
+. ++..+. .++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. .
T Consensus 183 ~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~ 259 (336)
T 2ast_B 183 EKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--D 259 (336)
T ss_dssp HHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--T
T ss_pred hHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--C
Confidence 32 232222 455 6666666666 333 3445555666777777777776 555556666777777777777774 1
Q ss_pred cCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhh
Q 047097 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIR 390 (443)
Q Consensus 329 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 390 (443)
..+. ....+..+++|++|++++| +++.. +..+...++.|++++|++++..|..++
T Consensus 260 ~~~~---~~~~l~~~~~L~~L~l~~~-i~~~~---~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 260 IIPE---TLLELGEIPTLKTLQVFGI-VPDGT---LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCGG---GGGGGGGCTTCCEEECTTS-SCTTC---HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCHH---HHHHHhcCCCCCEEeccCc-cCHHH---HHHHHhhCcceEEecccCccccCCccc
Confidence 1111 1134566777777777777 43222 222223355666677777766665554
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=195.17 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=178.7
Q ss_pred CCCCCEEECCCCcCcccCCc---ccCCCCCCCEEEccCCcCCCCCCccc--cCCCCCcEEecccccceeccC----cccc
Q 047097 97 LSFLRYINLANNGFLGEIPP---QIGRQDMLEGLVLSNNSFSGTIPTNL--SRCSNLIELFVDTNYLVGEIP----AAIG 167 (443)
Q Consensus 97 l~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~ 167 (443)
-..++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888888877542111 12235669999999999998888887 889999999999999886544 3455
Q ss_pred CCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccc---c--ccccCCCcCcEEecccCcCCCCCCh----hhh
Q 047097 168 GLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR---I--DSLVQLRNLLLLDIAFNHFSGTIPP----PIF 238 (443)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~--~~l~~l~~L~~L~l~~n~~~~~~~~----~l~ 238 (443)
.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. . ..+..+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 788999999999999888888899999999999999987653 2 23468899999999999986 3333 246
Q ss_pred CCCCCcEEEcccCCCCccCchhhhcCC---CCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCC
Q 047097 239 NISSLEVISLSENRFTGSLPVDTGVNL---PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 239 ~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+++|++|++++|.+.+..|..+. .+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 789999999999999976676554 33 79999999999999 6777664 7999999999999864 33 678899
Q ss_pred CCEEECCCCcCCC
Q 047097 316 LSWLNMGINNLGT 328 (443)
Q Consensus 316 L~~L~l~~n~l~~ 328 (443)
|+.|++++|.++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999864
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.2e-24 Score=208.68 Aligned_cols=267 Identities=18% Similarity=0.185 Sum_probs=151.5
Q ss_pred cCCcccCCCCCCCEEEccCCcCCCCCC----ccccCCCCCcEEeccccc---ceeccCccc-------cCCCCCcEEecc
Q 047097 113 EIPPQIGRQDMLEGLVLSNNSFSGTIP----TNLSRCSNLIELFVDTNY---LVGEIPAAI-------GGLFKLERLFIF 178 (443)
Q Consensus 113 ~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~ 178 (443)
.++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455566667777777777777664433 235566777777776643 333334333 455666666666
Q ss_pred ccccCC----CCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCC---------CCCc
Q 047097 179 HNHITG----QLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNI---------SSLE 244 (443)
Q Consensus 179 ~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~---------~~L~ 244 (443)
+|.+++ .+|..+..+++|+.|++++|.+.... ..+ +..+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l--------------------~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI--------------------ARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH--------------------HHHHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH--------------------HHHHHHHhhhhhcccCCCCc
Confidence 665554 23344444555555555555443221 111 1112222 5666
Q ss_pred EEEcccCCCC-ccCch--hhhcCCCCccEEeCCCCcCcc-----cCCccccCCCCCCEEecccCccc----ccCCccccC
Q 047097 245 VISLSENRFT-GSLPV--DTGVNLPNLRQLSPNGNNFTG-----SIPVSLSNASRLEMIEFSRNQFS----GRVSVDFSR 312 (443)
Q Consensus 245 ~L~l~~n~~~-~~~~~--~~~~~~~~L~~L~l~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~ 312 (443)
+|++++|.+. +.++. .....+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..++..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 6666666665 22321 112255667777777776652 23335667777777777777775 445566677
Q ss_pred CCCCCEEECCCCcCCCcCCCchhhhhhh--cCCCCCCEEEccCCcccc----cCchhHHhhccCCCEEeCcCCcCcccCc
Q 047097 313 LKNLSWLNMGINNLGTGTANELDFINLL--TNCSKLERLYFNRNRFEG----ELPHSVANLSSTIKQIAMGRNRISGTIP 386 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~l--~~~~~L~~L~Ls~n~l~~----~~p~~~~~~~~~L~~L~l~~n~l~~~~~ 386 (443)
+++|++|++++|.+++... ..++..+ +.+++|++|++++|.+++ .+|..+....++|+.|++++|.+++..+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGA--AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHH--HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhH--HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7778888887777754321 1122444 337788888888888876 3666664434778888888888876653
Q ss_pred --hhh-hcccCCCeeccc
Q 047097 387 --PEI-RKLVSLNWLTID 401 (443)
Q Consensus 387 --~~l-~~l~~L~~L~l~ 401 (443)
..+ ..+++++.+++.
T Consensus 321 ~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 321 VVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHhhhcCcchhh
Confidence 222 234444444443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.1e-22 Score=178.71 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=129.9
Q ss_pred CCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCc-CCCCCCccccCCCCCcEEeccc-ccceeccCccccCCCCCcEE
Q 047097 98 SFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS-FSGTIPTNLSRCSNLIELFVDT-NYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L 175 (443)
+++++|++++|.+++..+..|+++++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999999887666688888899999999886 7755556788888888888887 88876666677888888888
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccC-cCCCCCChhhhCCCCCc-EEEcccCCC
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFN-HFSGTIPPPIFNISSLE-VISLSENRF 253 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~~ 253 (443)
++++|.+++ +|. +..+++|+ .|++|++++| .+++..+..+..+++|+ +|++++|.+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred eCCCCCCcc-ccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 888887774 454 44444443 1124555555 44433334455566666 666666666
Q ss_pred CccCchhhhcCCCCccEEeCCCCc-CcccCCccccCC-CCCCEEecccCcccccCCccccCCCCCCEEECCCC
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNN-FTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGIN 324 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
+ .+|...+.. ++|++|++++|. +++..+..+..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 169 ~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 T-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp C-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred c-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 5 555555423 566666666663 654444555556 6666666666666532221 4555556655543
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.1e-22 Score=178.71 Aligned_cols=196 Identities=15% Similarity=0.105 Sum_probs=146.6
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCc-CcccCCcccCCCCCCCEEEccC-CcCCCCCCccccCCCCCcEE
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNG-FLGEIPPQIGRQDMLEGLVLSN-NSFSGTIPTNLSRCSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 151 (443)
..++.|++++|.+++..+..+.++++|++|++++|. +++..+.+|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998888899999999999999997 8866667899999999999998 99997667789999999999
Q ss_pred ecccccceeccCccccCCCCCc---EEecccc-ccCCCCCccccCCCCCC-EEEccCCcCccccc-cccCCCcCcEEecc
Q 047097 152 FVDTNYLVGEIPAAIGGLFKLE---RLFIFHN-HITGQLPASIGNLSSLL-AFDVRENILWGRID-SLVQLRNLLLLDIA 225 (443)
Q Consensus 152 ~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~-~l~~l~~L~~L~l~ 225 (443)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+.++++|+ +|++++|.+...+. .+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 665 88888888 9999999 88866566677777777 77777776665442 2323 556666666
Q ss_pred cCc-CCCCCChhhhCC-CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCC
Q 047097 226 FNH-FSGTIPPPIFNI-SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGN 276 (443)
Q Consensus 226 ~n~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 276 (443)
+|. +++..+..+..+ ++|++|++++|.++ .+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 663 553334445555 55566666555555 44433 3445555555443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9.7e-22 Score=176.78 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=102.1
Q ss_pred cCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEec
Q 047097 218 NLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
..++++++++.++ .+|..+. +.+++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4556666666665 4444332 456666666666663 33333335666666666666666555555666666666666
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCc
Q 047097 298 SRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMG 377 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~ 377 (443)
++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS------GVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLS 163 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcCh------hHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECC
Confidence 6666665555555666666666666666655444 344555666666666666653333233333 556666666
Q ss_pred CCcCcccCchhhhcccCCCeeccccccccc
Q 047097 378 RNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 378 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 407 (443)
+|++++..+..+..+++|+.|++++|++.+
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 666665444455556666666666666554
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.4e-21 Score=179.49 Aligned_cols=192 Identities=23% Similarity=0.340 Sum_probs=101.3
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ + +.+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence 45556666666665542 33 35555666666666665553 222 5556666666666665543 2 245556666666
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCc
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 255 (443)
++++|.+++ ++ .+..+++|++|++++|.+...+. +..+++|++|++++|.+++. +. +..+++|++|++++|.+.
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC-
Confidence 666665553 22 25555555555555555443332 44555555555555555532 22 555556666666666555
Q ss_pred cCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCccc
Q 047097 256 SLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
.++. ...+++|++|++++|.+++.. .+..+++|++|++++|+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 3332 224555666666665555322 2455555555555555554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.1e-21 Score=178.81 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=112.8
Q ss_pred ECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccC
Q 047097 104 NLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 104 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
.+..+.+++.+ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence 34444444322 2345778888888888877 344 577788888888888887743 33 777888888888888776
Q ss_pred CCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhc
Q 047097 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGV 263 (443)
Q Consensus 184 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 263 (443)
+ + ..+..+++|+.|++++|.+...+. +..+++|++|++++|.+++.. . +..+++|++|++++|.+. .++. ..
T Consensus 99 ~-~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~~--l~ 170 (308)
T 1h6u_A 99 N-V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVS-DLTP--LA 170 (308)
T ss_dssp C-C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCC-CCGG--GT
T ss_pred C-c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCC-CChh--hc
Confidence 4 2 246666666666666666554332 455555555555555554321 1 444555555555555554 2322 22
Q ss_pred CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
.+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 44455555555554442211 3444444444444444443221 34444444444444443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.8e-21 Score=165.80 Aligned_cols=195 Identities=17% Similarity=0.197 Sum_probs=137.2
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+ .+++++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45667777665 344333 457888888888887 56655555788888888888888865555667788888888888
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 379 (443)
|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+.. .++|+.|++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPD------GVFDKLTQLKDLRLYQNQLKSVPDGVFDR-LTSLQYIWLHDN 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCH------hHhccCCcCCEEECCCCccceeCHHHhcc-CCCccEEEecCC
Confidence 88886666667788888888888888876555 45677788888888888887433333444 377888888888
Q ss_pred cCcccCchhhhcccCCCeeccccccccccCchhccCCCCCCeeecccCcCccccCcc
Q 047097 380 RISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQGSIPSS 436 (443)
Q Consensus 380 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
.+.+ .+++|++|+++.|+++|.+|+.++.++. ++..|...|..+..
T Consensus 159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred Ceec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 7663 3457778888888888888887776654 45555555444443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=6.9e-21 Score=189.33 Aligned_cols=187 Identities=25% Similarity=0.305 Sum_probs=127.3
Q ss_pred CCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCC
Q 047097 195 SLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPN 274 (443)
Q Consensus 195 ~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 274 (443)
+++.|++++|.+.+.+..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +. . +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEECC
Confidence 7778888888777755433 266788888888777 555 446777888888887773 665 32 2 77788888
Q ss_pred CCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCC
Q 047097 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRN 354 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n 354 (443)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ .+ . +. ++|+.|++++|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp------~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP------E-LP--ESLEALDVSTN 190 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC------C-CC--TTCCEEECCSS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc------h-hh--CCCCEEECcCC
Confidence 877774 555 56777788887777775 443 46677777777777766 22 1 22 67777777777
Q ss_pred cccccCchhHHhhccCC-------CEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCC
Q 047097 355 RFEGELPHSVANLSSTI-------KQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGEL 416 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l 416 (443)
.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 191 ~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 777 5665 322 45 77777777777 567777777777777777777777777766554
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=4.9e-21 Score=190.35 Aligned_cols=204 Identities=25% Similarity=0.280 Sum_probs=140.3
Q ss_pred CCCCCCCCC-----ceeee-eeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEE
Q 047097 54 SWNNSMNLC-----QWTGV-ICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGL 127 (443)
Q Consensus 54 ~w~~~~~~c-----~~~~~-~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 127 (443)
+|..+.++| .|.++ .|.. .+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 455555667 68888 6753 578999999999987 55555 378999999999998 666 457889999
Q ss_pred EccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCc
Q 047097 128 VLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 128 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 207 (443)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.+.
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999999985 776 654 89999999998885 565 67888888888888874 554 4567777777777766
Q ss_pred cccccccCCCcCcEEecccCcCCCCCChhhhCCCCC-------cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcc
Q 047097 208 GRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSL-------EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 280 (443)
+.+. +. ++|+.|++++|.++ .+|. +.. +| ++|++++|.++ .+|..++ .+++|+.|++++|.+++
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCCC
Confidence 6444 43 56666666666666 4444 322 44 55666666555 4555554 35555555555555555
Q ss_pred cCCcccc
Q 047097 281 SIPVSLS 287 (443)
Q Consensus 281 ~~~~~l~ 287 (443)
.+|..+.
T Consensus 245 ~~p~~l~ 251 (571)
T 3cvr_A 245 RIRESLS 251 (571)
T ss_dssp HHHHHHH
T ss_pred cCHHHHH
Confidence 5554443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.3e-20 Score=162.80 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=88.1
Q ss_pred EEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCc
Q 047097 198 AFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 198 ~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 277 (443)
.++.+++.+...+..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc
Confidence 3444444444333222 234555555555555433334455555555555555555 3444333345555555555555
Q ss_pred CcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 278 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSCCBC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH------HHhccCCCccEEEecCCCee
Confidence 554333344555555555555555554444444555555555555555544333 33444555555555555554
Q ss_pred ccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 358 GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 358 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
+.. +.|+.|+++.|+++|.+|..++.++
T Consensus 162 ~~~--------~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 CTC--------PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCT--------TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCC--------CCHHHHHHHHHhCCceeeccCcccc
Confidence 322 2344555555555555555554443
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=4.5e-20 Score=174.27 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=164.9
Q ss_pred EcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCC-ccccCCCCCcE-Eeccccc
Q 047097 80 DLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIP-TNLSRCSNLIE-LFVDTNY 157 (443)
Q Consensus 80 ~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~~n~ 157 (443)
+.++++++ .+|..+ .+++++|+|++|+++...+.+|+++++|++|+|++|.+.+.+| ..|.+++++++ +.+..|+
T Consensus 15 ~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 15 LCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 33445555 345444 3579999999999986555679999999999999999876665 45788888775 5566788
Q ss_pred ceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccC-CcCcccc-ccccCCC-cCcEEecccCcCCCCCC
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE-NILWGRI-DSLVQLR-NLLLLDIAFNHFSGTIP 234 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~-~~l~~l~-~L~~L~l~~n~~~~~~~ 234 (443)
++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+...+ ..+..+. .++.|++++|.++ .++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EEC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCC
Confidence 8877788899999999999999999866555666667777888765 4555544 4455543 5777888888877 455
Q ss_pred hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCC
Q 047097 235 PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
......++|+++++.+++..+.+|...+..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-...+|. +..++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCc
Confidence 555566678888887543333777776667788888888888877 34432 244566666555543334453 66777
Q ss_pred CCCEEECCCC
Q 047097 315 NLSWLNMGIN 324 (443)
Q Consensus 315 ~L~~L~l~~n 324 (443)
+|+.++++++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 7777777643
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.2e-20 Score=174.46 Aligned_cols=235 Identities=16% Similarity=0.115 Sum_probs=187.1
Q ss_pred CceeeeeeCCC---------CCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCC-cccCCCCCCCE-EEcc
Q 047097 62 CQWTGVICGRR---------HQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIP-PQIGRQDMLEG-LVLS 130 (443)
Q Consensus 62 c~~~~~~c~~~---------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~l~ 130 (443)
|.+..|.|... ...+++|+|++|.++...+..|.++++|++|+|++|.+.+.++ .+|.+++++++ +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 66777888542 1468999999999998777889999999999999999876655 56889998876 5667
Q ss_pred CCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccc-cccCCCCCccccCC-CCCCEEEccCCcCcc
Q 047097 131 NNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFH-NHITGQLPASIGNL-SSLLAFDVRENILWG 208 (443)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~ 208 (443)
+|.+....|..|..+++|++|++++|.++...+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7899977788899999999999999999866666677778888999866 45664444556665 468999999999998
Q ss_pred ccccccCCCcCcEEecccCcCCCCCC-hhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCcccc
Q 047097 209 RIDSLVQLRNLLLLDIAFNHFSGTIP-PPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLS 287 (443)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 287 (443)
.+.......+|+.+++.+++..+.+| ..+..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-.+.+|. +.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCTTCCCCCC-TT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCCCcCcCCC-ch
Confidence 88655566789999998644444665 45788999999999999998 88875 456777877766655556774 78
Q ss_pred CCCCCCEEecccCc
Q 047097 288 NASRLEMIEFSRNQ 301 (443)
Q Consensus 288 ~~~~L~~L~l~~n~ 301 (443)
.+++|+.+++.++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 89999999998654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.6e-19 Score=162.73 Aligned_cols=174 Identities=20% Similarity=0.293 Sum_probs=128.9
Q ss_pred cccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASR 291 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 291 (443)
.+..+++|+.|++++|.+... + .+..+++|++|++++|.+. .++. ...+++|++|++++|.+++ ++ .+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCC
Confidence 345677888888888888743 3 4777888888888888887 4444 3378888888888888874 33 3778888
Q ss_pred CCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L 371 (443)
|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..| +..+ ++|
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l-~~L 180 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKL 180 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCCccccchh--hcCC-Ccc
Confidence 88888888888753 3577788888888888887653 346677888888888888875433 4443 778
Q ss_pred CEEeCcCCcCcccCchhhhcccCCCeeccccccccc
Q 047097 372 KQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTG 407 (443)
Q Consensus 372 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 407 (443)
+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 888888888874 34 37788888888888888774
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=9.6e-19 Score=154.73 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=129.3
Q ss_pred CCCCCCCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCC
Q 047097 53 SSWNNSMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNN 132 (443)
Q Consensus 53 ~~w~~~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 132 (443)
..|..+...|.|.++.|... .++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 34556778899999888642 222 2333332 78888999888888777888888888999999888
Q ss_pred cCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-c
Q 047097 133 SFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-D 211 (443)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~ 211 (443)
.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+...+ .
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 887555566788888999999988888666666788889999999988888 67888888889999999998888777 5
Q ss_pred cccCCCcCcEEecccCcCCCC
Q 047097 212 SLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~ 232 (443)
.+..+++|+.|++++|.+...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 678888999999999887744
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=153.52 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=112.6
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCC-ccccCCCCCCEEecccCcccccCCccccCCCCCCEEECC
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMG 322 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
+++++++|.++ .+|..+ .+.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888887 677643 3556788888888886544 346778888888888888887777677888888888888
Q ss_pred CCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccc
Q 047097 323 INNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDR 402 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 402 (443)
+|.+++..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 90 ~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 90 SNRLENVQH------KMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SSCCCCCCG------GGGTTCSSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCccCccCH------hHhcCCcCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 888776655 556777777888887777776556555554 6677777777777766677777777777777777
Q ss_pred ccccc
Q 047097 403 NQLTG 407 (443)
Q Consensus 403 n~~~~ 407 (443)
|.+.+
T Consensus 163 N~l~c 167 (220)
T 2v70_A 163 NPFNC 167 (220)
T ss_dssp CCEEC
T ss_pred cCCcC
Confidence 77764
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.2e-18 Score=153.07 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=120.5
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCC
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888887 777654 36888999999988876666788888899999999988887788888888888888888
Q ss_pred CcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccc
Q 047097 324 NNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRN 403 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 403 (443)
|.++...+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 90 N~l~~l~~------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPK------SLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCH------hHccCCCCCCEEECCCCCCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88876655 556778888888888888886556555554 77888888888888666666777888888888888
Q ss_pred ccc
Q 047097 404 QLT 406 (443)
Q Consensus 404 ~~~ 406 (443)
++.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 776
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=7.8e-19 Score=166.42 Aligned_cols=176 Identities=20% Similarity=0.284 Sum_probs=126.2
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhc-CCCCccEEeCCCCcCcccCCccccCCCCCCEEecc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGV-NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
+.++++++.++ .+|..+. +.++.|++++|.++ .++...+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56778877776 4555442 45778888888887 55555554 67888888888888886666677888888888888
Q ss_pred cCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHH---hhccCCCEEe
Q 047097 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA---NLSSTIKQIA 375 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~---~~~~~L~~L~ 375 (443)
+|++++..+..|..+++|++|++++|.+.+..+ ..+..+++|++|+|++|.++ .+|..++ ...++|+.|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR------NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEE
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECH------HHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEE
Confidence 888877766677788888888888888876655 56777788888888888887 4555443 2236777788
Q ss_pred CcCCcCcccCchhhhcccC--CCeecccccccc
Q 047097 376 MGRNRISGTIPPEIRKLVS--LNWLTIDRNQLT 406 (443)
Q Consensus 376 l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~ 406 (443)
+++|.+++..+..+..++. ++.|++++|.+.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8888777555556666665 367777777766
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.6e-18 Score=151.00 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=120.0
Q ss_pred CCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEEC
Q 047097 242 SLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNM 321 (443)
Q Consensus 242 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 321 (443)
+-+.++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567888888887 777653 478888888888888777888888888888888888887666666788888888888
Q ss_pred CCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccc
Q 047097 322 GINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTID 401 (443)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 401 (443)
++|.+++..+ ..+..+++|++|++++|.++ .+|..+..+ ++|+.|++++|++++..+..+..+++|+.|+++
T Consensus 96 s~N~l~~l~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 96 GTNQLTVLPS------AVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSSCCCCCCT------TTTTTCTTCCEEECCSSCCC-SCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCcCCccCh------hHhCcchhhCeEeccCCccc-ccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 8888876655 55677788888888888887 677776654 778888888888876555667777888888888
Q ss_pred ccccccc
Q 047097 402 RNQLTGT 408 (443)
Q Consensus 402 ~n~~~~~ 408 (443)
+|.+.+.
T Consensus 168 ~N~~~c~ 174 (229)
T 3e6j_A 168 GNPWDCE 174 (229)
T ss_dssp TSCBCTT
T ss_pred CCCccCC
Confidence 8877744
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4e-18 Score=156.43 Aligned_cols=172 Identities=23% Similarity=0.321 Sum_probs=93.4
Q ss_pred cCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcE
Q 047097 95 GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 174 (443)
..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + +.+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 455666666666666653 22 35566666666666666653322 5566666666666665543 2 23555555555
Q ss_pred EeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCC
Q 047097 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 254 (443)
|++++|.+++ . ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 117 L~L~~n~i~~------------------------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 117 LSLEHNGISD------------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EECTTSCCCC------------------------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EECCCCcCCC------------------------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5555555542 1 2233444555555555555432 34555666666666666665
Q ss_pred ccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccc
Q 047097 255 GSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 304 (443)
+ ++. ...+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 170 ~-~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 D-IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C-CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred c-chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 2 322 2256666666666666653 33 25566666666666666553
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=7.4e-19 Score=176.62 Aligned_cols=187 Identities=19% Similarity=0.273 Sum_probs=147.9
Q ss_pred EEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcC
Q 047097 199 FDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 199 L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 278 (443)
+.+..+.+... ..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++. + ..+++|+.|++++|.+
T Consensus 26 l~l~~~~i~~~-~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-L-TNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSE-ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-G-GGCTTCCEEECCSSCC
T ss_pred HhccCCCcccc-cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-h-ccCCCCCEEECcCCCC
Confidence 33444443332 234567889999999999874 33 5888999999999999998 4444 3 3899999999999999
Q ss_pred cccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+
T Consensus 100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 100 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCSSCCCC
T ss_pred CC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcCCcCCC
Confidence 84 34 688899999999999999863 4588899999999999988764 357788999999999999986
Q ss_pred cCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccccc
Q 047097 359 ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
..| +..+ ++|+.|++++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 168 ~~~--l~~l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccC-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 555 5554 8899999999999853 4688899999999999998854
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.7e-18 Score=171.50 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=116.1
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
.+++.|+++++.+... + .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+.+ +| .+..+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 4567777777776543 2 46777777777777777764333 7777777777777777763 33 5677777777777
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.+. +..+++|+.|++++|.+++.
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-
Confidence 7777764 2 3577777777777777777643 566777777777777777766555 66777777777777777643
Q ss_pred ChhhhCCCCCcEEEcccCCCC
Q 047097 234 PPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~ 254 (443)
+.+..+++|+.|++++|.+.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEE
T ss_pred -hHHccCCCCCEEEccCCcCc
Confidence 35667777777777777665
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=6.9e-20 Score=188.59 Aligned_cols=260 Identities=20% Similarity=0.169 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHhhCC-CCCCCCCCCCC-CCCCCceeeeeeCCCCCcEEEEEcCCCCCceecCccccCCCCCCEE----
Q 047097 30 SNETDRLALLAIKSQLH-DPLGVTSSWNN-SMNLCQWTGVICGRRHQRVTRLDLRNQSIGGTLSPYVGNLSFLRYI---- 103 (443)
Q Consensus 30 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~~~~~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L---- 103 (443)
..+.++.++.++...+. ..+.....|.. ......|.+..+.. ++++.|++.++.+... +..+.....|+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence 34667788888887765 33333445633 33456687777655 6799999998887653 3322222223332
Q ss_pred -ECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEecccccc
Q 047097 104 -NLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHI 182 (443)
Q Consensus 104 -~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 182 (443)
++..|.+. ..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|.++++|++|++++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 23333333 45677888999999999999988 78888888999999999999998 7888899999999999999999
Q ss_pred CCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCC-CcEEEcccCCCCccCchhh
Q 047097 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISS-LEVISLSENRFTGSLPVDT 261 (443)
Q Consensus 183 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~ 261 (443)
+ .+|..++++++|++|++++|.+...+..+..+++|+.|++++|.+++.+|..+..... ...+++++|.+++.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred C-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 8 7798999999999999999988877777888999999999999998877776654322 22467888888766654
Q ss_pred hcCCCCccEEeCCCC--------cCcccCCccccCCCCCCEEecccCccc
Q 047097 262 GVNLPNLRQLSPNGN--------NFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 262 ~~~~~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
.++.|+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 360 -----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 -----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----C-----------------------------------------CCC
T ss_pred -----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3555666655 233333333445555566666666553
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=149.40 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=127.7
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.+++++|.++ .+|..+ ...+++|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57889988887 466554 345689999999988544555555889999999999999877777888999999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 379 (443)
|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN------DSFIGLSSVRLLSLYDNQITTVAPGAFDTL-HSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT------TSSTTCTTCSEEECTTSCCCCBCTTTTTTC-TTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH------hHcCCCccCCEEECCCCcCCEECHHHhcCC-CCCCEEEecCc
Confidence 99988877788899999999999999988776 567788999999999999997667777665 78999999999
Q ss_pred cCccc
Q 047097 380 RISGT 384 (443)
Q Consensus 380 ~l~~~ 384 (443)
.+.+.
T Consensus 164 ~l~c~ 168 (220)
T 2v70_A 164 PFNCN 168 (220)
T ss_dssp CEECS
T ss_pred CCcCC
Confidence 88764
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=5.5e-18 Score=148.83 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=128.5
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+. +++++|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888887 5665543 68999999999998 56665555889999999999999988888999999999999999
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 379 (443)
|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRV------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-RAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCH------HHcCCCCCCCEEECCCCcCCEECHHHHhCC-CCCCEEEeCCC
Confidence 99997777778899999999999999988776 678889999999999999995555445554 88999999999
Q ss_pred cCcc
Q 047097 380 RISG 383 (443)
Q Consensus 380 ~l~~ 383 (443)
.+..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 8874
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.7e-18 Score=160.47 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=147.1
Q ss_pred CEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhh-CCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCC
Q 047097 197 LAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIF-NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNG 275 (443)
Q Consensus 197 ~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 275 (443)
+.++++++.+...+..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 578999998888775443 4589999999999977777776 8999999999999998 56655555899999999999
Q ss_pred CcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhh---cCCCCCCEEEcc
Q 047097 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL---TNCSKLERLYFN 352 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l---~~~~~L~~L~Ls 352 (443)
|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.++.... ..+ ..+++|+.|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG------GGTC----CTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH------HHhcCcccCCcCCEEECC
Confidence 99997777789999999999999999998888899999999999999999987654 333 678999999999
Q ss_pred CCcccccCchhHHhhccC--CCEEeCcCCcCcc
Q 047097 353 RNRFEGELPHSVANLSST--IKQIAMGRNRISG 383 (443)
Q Consensus 353 ~n~l~~~~p~~~~~~~~~--L~~L~l~~n~l~~ 383 (443)
+|++++..+..+..+ +. ++.|++++|.+..
T Consensus 172 ~N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKL-PAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHS-CHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhc-cHhhcceEEecCCCccC
Confidence 999994333445544 44 5889999999874
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.9e-18 Score=148.01 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=82.9
Q ss_pred hCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 047097 238 FNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317 (443)
Q Consensus 238 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 317 (443)
..+++|++|++++|.+. .+| .+. .+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPN-------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCC--------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChh--------
Confidence 34455555555555554 444 222 4455555555555433 1223444444455555444444433333
Q ss_pred EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCc-CcccCchhhhcccCCC
Q 047097 318 WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNR-ISGTIPPEIRKLVSLN 396 (443)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 396 (443)
+..+++|++|++++|.+++..|..+..+ ++|+.|++++|. ++ .+| .+..+++|+
T Consensus 108 ----------------------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~-~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 108 ----------------------LSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAIT-DIM-PLKTLPELK 162 (197)
T ss_dssp ----------------------CTTCTTCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCC-CCG-GGGGCSSCC
T ss_pred ----------------------hcCCCCCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCcc-ccH-hhcCCCCCC
Confidence 4445555555555555554455545443 556666666665 43 344 566777777
Q ss_pred eeccccccccccCchhccCCCCCCeeecccCcCcc
Q 047097 397 WLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 397 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 77777777773 44 56777778888888877754
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.2e-18 Score=145.92 Aligned_cols=151 Identities=21% Similarity=0.213 Sum_probs=70.3
Q ss_pred CCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEE
Q 047097 96 NLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 175 (443)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555554 333 3445555555555555433 22344455555555555555544444445555555555
Q ss_pred eccccccCCCCCccccCCCCCCEEEccCCc-CccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 176 FIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
++++|.+++..|..+..+++|++|++++|. +... ..+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 555555544444444444444444444443 2222 233444444444444444442 11 344445555555555444
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.6e-20 Score=187.51 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=133.4
Q ss_pred CCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc-------------ceeccCccccCCCCCcEEe-ccccccCC
Q 047097 119 GRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY-------------LVGEIPAAIGGLFKLERLF-IFHNHITG 184 (443)
Q Consensus 119 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~l~~ 184 (443)
..+++|+.|++++|.+. .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45667777777777776 667777777777777776553 2334455555666666665 4443221
Q ss_pred CCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcC
Q 047097 185 QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVN 264 (443)
Q Consensus 185 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 264 (443)
+|+.+.+.+|.+...+. ..|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+. .
T Consensus 424 ----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-A 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-G
T ss_pred ----------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-c
Confidence 12222222332222211 236777777777774 554 777777888888888777 7776555 7
Q ss_pred CCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccC-CccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCC
Q 047097 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNC 343 (443)
Q Consensus 265 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 343 (443)
+++|+.|++++|.+++ +| .+..+++|++|++++|.+++.. |..+..+++|+.|++++|.+++..+... ..+..+
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~---~l~~~l 559 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE---RLAEML 559 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT---HHHHHC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH---HHHHHC
Confidence 7788888888887774 55 6777788888888888887765 7777788888888888888776654211 234456
Q ss_pred CCCCEEEc
Q 047097 344 SKLERLYF 351 (443)
Q Consensus 344 ~~L~~L~L 351 (443)
++|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 77887764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=7.5e-18 Score=152.17 Aligned_cols=171 Identities=19% Similarity=0.307 Sum_probs=134.4
Q ss_pred CCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCE
Q 047097 215 QLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 294 (443)
.+.++..++++.+.+++.. .+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3456777888888887433 5778899999999999987 666 333 78999999999999985443 888999999
Q ss_pred EecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEE
Q 047097 295 IEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQI 374 (443)
Q Consensus 295 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 374 (443)
|++++|++++..+ +.. ++|+.|++++|.+++. ..+..+++|++|++++|++++ ++ .+..+ ++|+.|
T Consensus 90 L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--------~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l-~~L~~L 155 (263)
T 1xeu_A 90 LSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--------DSLIHLKNLEILSIRNNKLKS-IV-MLGFL-SKLEVL 155 (263)
T ss_dssp EECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--------GGGTTCTTCCEEECTTSCCCB-CG-GGGGC-TTCCEE
T ss_pred EECCCCccCCcCc--ccc-CcccEEEccCCccCCC--------hhhcCcccccEEECCCCcCCC-Ch-HHccC-CCCCEE
Confidence 9999999886332 233 8899999999988763 347788899999999999884 44 45554 789999
Q ss_pred eCcCCcCcccCchhhhcccCCCeecccccccccc
Q 047097 375 AMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGT 408 (443)
Q Consensus 375 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 408 (443)
++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999998865 6788888999999999988844
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=7.4e-18 Score=173.48 Aligned_cols=192 Identities=19% Similarity=0.187 Sum_probs=120.3
Q ss_pred EecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCc
Q 047097 222 LDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301 (443)
Q Consensus 222 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 301 (443)
+++..|.+. ..+..+..++.|+.|++++|.+. .+|..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 344444444 45677788899999999999988 8888877 8899999999999998 788888999999999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcC
Q 047097 302 FSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRI 381 (443)
Q Consensus 302 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l 381 (443)
++ .+|..+..+++|++|+|++|.++.. + ..+..+++|++|+|++|.+++.+|..+.........+++++|.+
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~~l-p------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVTTL-P------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCCCC-C------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCCcc-C------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 98 6788899999999999999988643 3 45788999999999999999888887766433344578999999
Q ss_pred cccCchhhhcccCCCeeccccc--------cccccCchhccCCCCCCeeecccCcCcc
Q 047097 382 SGTIPPEIRKLVSLNWLTIDRN--------QLTGTIPPEIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 382 ~~~~~~~l~~l~~L~~L~l~~n--------~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++.+|.. |+.|++++| .+.+..+..+..+.+++...+++|-+.+
T Consensus 354 ~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 354 EIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp CCCCCCC-----------------------------------------------CCCG
T ss_pred cCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 9888754 455666666 3444444455666777778888887754
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=5.7e-17 Score=146.40 Aligned_cols=163 Identities=25% Similarity=0.278 Sum_probs=79.5
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCC
Confidence 33445555554333 3455666666666666665 333 455566666666666666532 22 556666666666666
Q ss_pred cceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChh
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPP 236 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
++++ +|. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+.+.+ .+..+++|++|++++|.+++. ..
T Consensus 96 ~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 96 RLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp CCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred ccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HH
Confidence 6553 222 122 5555555555555532 23444444444444444444332 333444444444444444432 23
Q ss_pred hhCCCCCcEEEcccCCC
Q 047097 237 IFNISSLEVISLSENRF 253 (443)
Q Consensus 237 l~~~~~L~~L~l~~n~~ 253 (443)
+..+++|+.|++++|.+
T Consensus 168 l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp STTCCCCCEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCcc
Confidence 33444444444444443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.1e-19 Score=179.44 Aligned_cols=205 Identities=19% Similarity=0.185 Sum_probs=150.9
Q ss_pred cCCCCCcEEecccccceeccCccccCCCCCcEEeccccc-------------cCCCCCccccCCCCCCEEE-ccCCcCcc
Q 047097 143 SRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNH-------------ITGQLPASIGNLSSLLAFD-VRENILWG 208 (443)
Q Consensus 143 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~~~~ 208 (443)
..+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45778888888888876 678888888888888876553 2223333344444444443 222211
Q ss_pred ccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccC
Q 047097 209 RIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSN 288 (443)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 288 (443)
..|+.+.+++|.++. ++ ...|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..+..
T Consensus 423 --------~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp --------HHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred --------chhhhhhhhcccccc-cC-----ccCceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhc
Confidence 123333344444431 11 135899999999998 5776 44 8999999999999999 88999999
Q ss_pred CCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcC-CCchhhhhhhcCCCCCCEEEccCCcccccCch--hHH
Q 047097 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGT-ANELDFINLLTNCSKLERLYFNRNRFEGELPH--SVA 365 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~--~~~ 365 (443)
+++|+.|++++|.+++ +| .++.+++|+.|++++|.+++.. + ..+..+++|+.|++++|++++..|. .+.
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p------~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI------QPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT------GGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc------HHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence 9999999999999997 56 7999999999999999998876 6 6788999999999999999965443 233
Q ss_pred hhccCCCEEeC
Q 047097 366 NLSSTIKQIAM 376 (443)
Q Consensus 366 ~~~~~L~~L~l 376 (443)
...++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 44588998864
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=6.5e-18 Score=158.04 Aligned_cols=218 Identities=12% Similarity=0.126 Sum_probs=100.9
Q ss_pred CCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcC----CCCCChhhhCCCCC
Q 047097 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHF----SGTIPPPIFNISSL 243 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~~~~L 243 (443)
+++|+.+++.. .++..-+.+|.+|++|+.+++..|.+.... ..|..+.++..+....+.. ...-...+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 555444455666666666666666554444 4455554454444433211 11112223344444
Q ss_pred c-EEEcccCCCCccCchhhhc---CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEE
Q 047097 244 E-VISLSENRFTGSLPVDTGV---NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWL 319 (443)
Q Consensus 244 ~-~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+ .+.+.... .++..++. ...+++.+.+.++-...........+++|+++++++|.++......|.++++|+.+
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 4 33333221 22222221 12333444443321111111111124455555555555544444445555555555
Q ss_pred ECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCC-EEeCcCCcCcccCchhhhcccCCCee
Q 047097 320 NMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIK-QIAMGRNRISGTIPPEIRKLVSLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L 398 (443)
++..| +..... ..|.+|++ |+ .+++.+ .++...+..|.+|++|+.+
T Consensus 256 ~l~~n-i~~I~~------~aF~~~~~-------------------------L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 256 KLPHN-LKTIGQ------RVFSNCGR-------------------------LAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp ECCTT-CCEECT------TTTTTCTT-------------------------CCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred ECCcc-cceehH------HHhhCChh-------------------------ccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 55443 333222 33444444 44 444444 3433344566667777777
Q ss_pred ccccccccccCchhccCCCCCCeee
Q 047097 399 TIDRNQLTGTIPPEIGELKNLQLLN 423 (443)
Q Consensus 399 ~l~~n~~~~~~p~~~~~l~~L~~L~ 423 (443)
++++|+++...+.+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777644455677777777665
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.5e-16 Score=148.78 Aligned_cols=281 Identities=12% Similarity=0.083 Sum_probs=164.1
Q ss_pred CcEEEEEcCCCCCceecCccccC-CCCCCEEECCCCcCc--ccCCcccCCCCCCCEEEccCCcCCCCCCccccC------
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGN-LSFLRYINLANNGFL--GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSR------ 144 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~-l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------ 144 (443)
.++++|+++++ +...-...+.. +++|++|||++|.+. ......+ +.++.+.+..+.+ .+..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccc
Confidence 45677777653 11111122333 788999999999887 2222222 2234444444432 2344555
Q ss_pred --CCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcC----cccc-ccccCCC
Q 047097 145 --CSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL----WGRI-DSLVQLR 217 (443)
Q Consensus 145 --l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~----~~~~-~~l~~l~ 217 (443)
+++|+.+++.+ .++...+.+|.++++|+.++++.|.+....+..|..+.++..+....+.. .... ..|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88888888888 77766667788888888888888888766677788777777776655321 1111 3455555
Q ss_pred cCc-EEecccCcCCCCCChhhh----CCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCC
Q 047097 218 NLL-LLDIAFNHFSGTIPPPIF----NISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292 (443)
Q Consensus 218 ~L~-~L~l~~n~~~~~~~~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 292 (443)
.|+ .+.+.... .++..+. ...+++.+.+.++-.. .-...+...+++|+.+++.+|+++...+..|.+|++|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 565 34433221 1222211 2344555555544221 1111122236677777777777765555566777777
Q ss_pred CEEecccCcccccCCccccCCCCCC-EEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCC
Q 047097 293 EMIEFSRNQFSGRVSVDFSRLKNLS-WLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTI 371 (443)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L 371 (443)
+++++.+| ++...+..|.++++|+ .+++.. .++.... ..|.+|++|+.+++++|.++ .++...+..+++|
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L 323 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------GAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPS 323 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT------TTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch------hhhhCCccCCEEEeCCCccC-ccchhhhcCCcch
Confidence 77777766 5555566677777777 777766 5555444 56677777777777777776 4444444334667
Q ss_pred CEEe
Q 047097 372 KQIA 375 (443)
Q Consensus 372 ~~L~ 375 (443)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7665
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=3.5e-16 Score=134.23 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=88.1
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+.. ++++|++++|.+.+..+...+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666664 45544432 6777777777776333322334677777777777777766667777777777777777
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCc
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 361 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT------TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH------HHhhcCCCCCEEEeCCCCccCcCc
Confidence 77777666667777777777777777776655 456666777777777777765544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.1e-16 Score=129.77 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=79.4
Q ss_pred CCCCEEecccCccc-ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc
Q 047097 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 368 (443)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l- 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKL- 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHC-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhC-
Confidence 34444444444444 33444444455555555555554432 124455666666666666665455544443
Q ss_pred cCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCc---hhccCCCCCCeeecccCcCccccCc
Q 047097 369 STIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIP---PEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
++|+.|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. ++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 6677777777777643 22567777777777777777773333 36777777888888877776 4443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.6e-16 Score=129.97 Aligned_cols=131 Identities=20% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCCCEEECCCCcCc-ccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEe
Q 047097 98 SFLRYINLANNGFL-GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 176 (443)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555666555554 34555555555555555555555432 4444455555555555554433443344444444444
Q ss_pred ccccccCCCCCccccCCCCCCEEEccCCcCcccc--ccccCCCcCcEEecccCcCCCCCC---hhhhCCCCCcEEEcccC
Q 047097 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLLLLDIAFNHFSGTIP---PPIFNISSLEVISLSEN 251 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n 251 (443)
+++|.++ ..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 102 Ls~N~l~------------------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLK------------------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCC------------------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccC------------------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 4444443 322 344445555555555555553332 24555556666666655
Q ss_pred CCC
Q 047097 252 RFT 254 (443)
Q Consensus 252 ~~~ 254 (443)
.+.
T Consensus 158 ~~~ 160 (168)
T 2ell_A 158 EDQ 160 (168)
T ss_dssp TSC
T ss_pred Chh
Confidence 554
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=4.6e-16 Score=133.49 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=109.6
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCc-ccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPP-QIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
+.++++++.++ .+|..+.. ++++|++++|.+++..+. .|+.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45778888875 45554433 899999999999865554 488999999999999999988888999999999999999
Q ss_pred ccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCcccc
Q 047097 156 NYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210 (443)
Q Consensus 156 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 210 (443)
|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9999888888999999999999999999888888888888888888888776543
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.8e-14 Score=138.03 Aligned_cols=332 Identities=12% Similarity=0.010 Sum_probs=224.4
Q ss_pred CceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCcc
Q 047097 86 IGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAA 165 (443)
Q Consensus 86 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 165 (443)
++.....+|.++++|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44455567888999999999754 66555678999999999999754 55345667888888888877654 33344456
Q ss_pred ccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcE
Q 047097 166 IGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEV 245 (443)
Q Consensus 166 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 245 (443)
|.++..++....... ......++.++++|+.+.+..+...-....|..+.+|+.+.+..+ ++......+..+..|+.
T Consensus 136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred eecccccccccCccc--cccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 666654443333222 223345688888899988876543323367788888888888765 33233456677888888
Q ss_pred EEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCc
Q 047097 246 ISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN 325 (443)
Q Consensus 246 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
+.+..+.. .+....+ ....|+.+.+... ++..-...+..+..++.+.+..+... .....|..+..++.+....+.
T Consensus 213 i~~~~~~~--~i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 213 MEFPNSLY--YLGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp CCCCTTCC--EECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred eecCCCce--Eeehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 77766543 2233333 5567888877644 33234456778888888888776443 455567888888888876654
Q ss_pred CCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccc
Q 047097 326 LGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 326 l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
+.. ..+..+.+|+.+.+.++ ++ .++...+..+++|+.+++..+ ++......|.+|++|+.+++..+ +
T Consensus 288 i~~---------~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l 354 (394)
T 4fs7_A 288 VPE---------KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L 354 (394)
T ss_dssp ECT---------TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred ecc---------ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c
Confidence 322 45678888999988765 44 455544444588999998754 55455677889999999999876 6
Q ss_pred cccCchhccCCCCCCeeecccCcCccccCccccCCCCC
Q 047097 406 TGTIPPEIGELKNLQLLNLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 443 (443)
+.....+|.+|++|+.+++..+ +. .+...|.+|++|
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred cEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 6455668999999999999765 33 445678777654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=8.1e-16 Score=126.25 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=87.3
Q ss_pred CCCCEEecccCccc-ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhc
Q 047097 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 368 (443)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l- 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC- 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHC-
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhC-
Confidence 45566666666665 45555556666666666666666543 235566777777777777775566655554
Q ss_pred cCCCEEeCcCCcCccc-CchhhhcccCCCeeccccccccccCc---hhccCCCCCCeeeccc
Q 047097 369 STIKQIAMGRNRISGT-IPPEIRKLVSLNWLTIDRNQLTGTIP---PEIGELKNLQLLNLGG 426 (443)
Q Consensus 369 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~ 426 (443)
++|+.|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6788888888887753 34677888888888888888885444 4677888888888763
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.4e-15 Score=124.72 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=48.7
Q ss_pred CCCCEEECCCCcCc-ccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEe
Q 047097 98 SFLRYINLANNGFL-GEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 176 (443)
+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45565566666666666666666533 4455555666666665555544444444455555555
Q ss_pred ccccccC
Q 047097 177 IFHNHIT 183 (443)
Q Consensus 177 l~~n~l~ 183 (443)
+++|.++
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 5555544
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=9.6e-14 Score=132.64 Aligned_cols=268 Identities=12% Similarity=0.086 Sum_probs=190.2
Q ss_pred cCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcE
Q 047097 95 GNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 174 (443)
..+..++.+.+.++ ++..-..+|.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .++...+.+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34567777777653 444556677775 6888888765 554555667664 688888875 566566678888889999
Q ss_pred EeccccccCCCCCccccCCCCCCEEEccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
+++..|.++..-...+. +.+|+.+.+..+ +.... ..|..+++|+.+++..+ ++..-...|.. ++|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99988888744444454 688888888755 44444 78888888999988864 43233344444 788998884 445
Q ss_pred CccCchhhhcCCCCccEEeCCCCcCc-----ccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCC
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNNFT-----GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGT 328 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
+ .++...+.++++|+.+++.++.+. ...+..|.+|++|+.+.+.+ .++......|.++++|+.+.+..+ ++.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 5 777777778899999998887664 34566788899999999984 476666778889999999999654 555
Q ss_pred cCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCc
Q 047097 329 GTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRIS 382 (443)
Q Consensus 329 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~ 382 (443)
... ..+.+| +|+.+++++|......+..+..+...++.|++..+.+.
T Consensus 337 I~~------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INF------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECT------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcH------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 444 668888 89999999987763333344444356788888776543
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=8.1e-14 Score=133.15 Aligned_cols=266 Identities=10% Similarity=0.086 Sum_probs=188.2
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEE
Q 047097 120 RQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 120 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
.+..++.+.+.+ .++......|.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .+...-+.+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 346677777754 3443455667664 7888888766 55455566776 4788888876 5555566778888889999
Q ss_pred EccCCcCcccc-ccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcC
Q 047097 200 DVRENILWGRI-DSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 200 ~l~~n~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 278 (443)
++..|.+...+ ..|. ..+|+.+.+..+ ++..-...|..+++|+.+++..+ ++ .++...+.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence 99888887777 4444 578888888744 55445566778888888888765 44 677777744 788888884 445
Q ss_pred cccCCccccCCCCCCEEecccCccc-----ccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccC
Q 047097 279 TGSIPVSLSNASRLEMIEFSRNQFS-----GRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNR 353 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~ 353 (443)
+..-...|.+|++|+.+.+.+|.+. ......|.++++|+.+++. +.++.... ..+.+|++|+.+.+..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~------~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ------GLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT------TTTTTCCSCCEEEECT
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh------hhhcCCCCccEEEECc
Confidence 5455677888888999988887664 3456678888889988887 44655554 6788888899888865
Q ss_pred CcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc-CCCeecccccccc
Q 047097 354 NRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV-SLNWLTIDRNQLT 406 (443)
Q Consensus 354 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~ 406 (443)
+ ++ .+....+..+ +|+.+++++|.+.......|.+++ +++.|.+..+.+.
T Consensus 333 ~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5 55 4444444444 788888888877755556666664 6778887776544
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.9e-13 Score=130.88 Aligned_cols=323 Identities=11% Similarity=0.054 Sum_probs=232.0
Q ss_pred CcEEEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEec
Q 047097 74 QRVTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 153 (443)
..++++.+.. .++.....+|.++++|+.+++..+ ++..-..+|.++..|+.+.+..+ +.......|.++..++....
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 5789999975 477677788999999999999765 55455678999999998877654 33344556666655444433
Q ss_pred ccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCC
Q 047097 154 DTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTI 233 (443)
Q Consensus 154 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
.... .....+|.++.+|+.+.+..+... .....+.++.+|+.+.+..+...-....+..+..|+.+.+..+... +
T Consensus 148 ~~~~--~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~--i 222 (394)
T 4fs7_A 148 EGVT--VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY--L 222 (394)
T ss_dssp TTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred cccc--ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE--e
Confidence 3322 234567889999999999765432 4556788899999999887632222267888888888887765432 3
Q ss_pred ChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCC
Q 047097 234 PPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
........+|+.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+....+.+. ...|..+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~ 296 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGC 296 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTC
T ss_pred ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccc
Confidence 3445566789988886543 3 555666668899999999877544 55667888899999888766442 3457889
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhccc
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 393 (443)
.+|+.+.+..+ ++.... ..+.+|.+|+.+++.++ ++ .+....+..+.+|+.+.+..+ ++..-...|.+|+
T Consensus 297 ~~L~~i~l~~~-i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGE------EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTCCEEEECTT-CCEECT------TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccc-cceech------hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 99999999754 544444 67889999999999754 55 455555555689999999876 6655667899999
Q ss_pred CCCeeccccccccccCchhccCCCCCCee
Q 047097 394 SLNWLTIDRNQLTGTIPPEIGELKNLQLL 422 (443)
Q Consensus 394 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999765 33 455678889888765
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=122.69 Aligned_cols=126 Identities=23% Similarity=0.260 Sum_probs=91.6
Q ss_pred EEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc
Q 047097 78 RLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 157 (443)
.++++++.++. +|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 46777777763 444332 57888888888887 667778888888888888888886666778888888888888888
Q ss_pred ceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCc
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 207 (443)
+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 87666667777778888888877777544445666666666666666543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.3e-14 Score=121.84 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=81.5
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+ .+++++|++++|.++ .+|..+ ..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 35566666655 344433 245667777777666 566433 3666777777777777655556666777777777777
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
|.+++..+..|..+++|++|++++|.++...+ ..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT------TTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeCh------hhhhcCccccEEEeCCCCee
Confidence 77776666666777777777777777765544 44566677777777777665
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=4.5e-14 Score=119.33 Aligned_cols=132 Identities=19% Similarity=0.300 Sum_probs=74.4
Q ss_pred cEEecccCcCCCCCChhhhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 220 LLLDIAFNHFSGTIPPPIFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555554 233222 245666666666665 44444433556666666666666644444455666666666666
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCc
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELP 361 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 361 (443)
|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH------HHhcCCcccCEEEecCCCeeccCc
Confidence 66665555555666666666666666654443 334555666666666666664433
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=1.1e-14 Score=123.08 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=67.5
Q ss_pred CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCC
Q 047097 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNC 343 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 343 (443)
.+++|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~------~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE------GLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS------CHHHHC
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc------chhhcC
Confidence 4566677777777666 3343222333666666666666643 345556666666666666554433 223445
Q ss_pred CCCCEEEccCCcccccCch--hHHhhccCCCEEeCcCCcCcccCchh----hhcccCCCeecccccccc
Q 047097 344 SKLERLYFNRNRFEGELPH--SVANLSSTIKQIAMGRNRISGTIPPE----IRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~~~ 406 (443)
++|++|++++|.++ .+|. .+..+ ++|+.|++++|.++ .+|.. +..+++|+.|++++|.+.
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l-~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASL-KSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGC-TTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcC-CCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 55555555555554 3333 23332 44555555555554 23332 444455555555554443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=8.9e-14 Score=117.51 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=93.3
Q ss_pred EEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccc
Q 047097 79 LDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYL 158 (443)
Q Consensus 79 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 158 (443)
+++++++++. +|..+ .++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 3444445543 23222 36889999999988866666778888999999999988866566678888888888888888
Q ss_pred eeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccc
Q 047097 159 VGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209 (443)
Q Consensus 159 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 209 (443)
++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 866666678888888888888888755444556677777777777766543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=3.1e-14 Score=120.26 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=63.2
Q ss_pred cCCCCCCEEecccCcccccCCccccCC-CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHH
Q 047097 287 SNASRLEMIEFSRNQFSGRVSVDFSRL-KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVA 365 (443)
Q Consensus 287 ~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (443)
..+++|++|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++ +|..++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~l~~-~~~~~~ 84 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNRICR-IGEGLD 84 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--------cccccCCCCCEEECCCCcccc-cCcchh
Confidence 344555555555555552 222 2222 2555555555555432 124445555555555555552 332221
Q ss_pred hhccCCCEEeCcCCcCcccCch--hhhcccCCCeeccccccccccCchh----ccCCCCCCeeecccCcC
Q 047097 366 NLSSTIKQIAMGRNRISGTIPP--EIRKLVSLNWLTIDRNQLTGTIPPE----IGELKNLQLLNLGGNFL 429 (443)
Q Consensus 366 ~~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l 429 (443)
...++|+.|++++|.++ .+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.||+++|..
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 11245555555555554 3333 4555555555555555555 34442 45555555555555544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.8e-16 Score=135.59 Aligned_cols=152 Identities=23% Similarity=0.309 Sum_probs=106.5
Q ss_pred CCccEEeCCCCcCcccCCc------cccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhh
Q 047097 266 PNLRQLSPNGNNFTGSIPV------SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINL 339 (443)
Q Consensus 266 ~~L~~L~l~~n~l~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
..++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.. + ..
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~------~~ 88 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-E------NL 88 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-S------SH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-c------ch
Confidence 3444444444444444443 66777777777777777775 44 677777888888888777632 2 33
Q ss_pred hcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCc-hhhhcccCCCeeccccccccccCch-------
Q 047097 340 LTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP-PEIRKLVSLNWLTIDRNQLTGTIPP------- 411 (443)
Q Consensus 340 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~------- 411 (443)
+..+++|++|++++|.+++ +| .+..+ ++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..|.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 4455788888888888884 45 45554 789999999998885322 4688899999999999998866554
Q ss_pred ---hccCCCCCCeeecccCcCcc
Q 047097 412 ---EIGELKNLQLLNLGGNFLQG 431 (443)
Q Consensus 412 ---~~~~l~~L~~L~l~~n~l~~ 431 (443)
.+..+++|+.|| +|+++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHhCCCcEEEC--CcccCH
Confidence 277889999887 777764
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=1.2e-15 Score=131.70 Aligned_cols=138 Identities=23% Similarity=0.304 Sum_probs=116.4
Q ss_pred ccCCCCCCEEecccCcccccCCc------cccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 286 LSNASRLEMIEFSRNQFSGRVSV------DFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++.. .+..+++|++|++++|.++ .
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~ 84 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-K 84 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-S
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-c
Confidence 44556788888888888887776 7899999999999999997732 3667899999999999999 7
Q ss_pred CchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCc-hhccCCCCCCeeecccCcCccccCc
Q 047097 360 LPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIP-PEIGELKNLQLLNLGGNFLQGSIPS 435 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
+|..+..+ ++|+.|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus 85 l~~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 85 IENLDAVA-DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CSSHHHHH-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ccchhhcC-CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 88766654 789999999999995 55 68999999999999999984222 4788999999999999999888765
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=3.5e-11 Score=115.10 Aligned_cols=320 Identities=10% Similarity=0.055 Sum_probs=183.7
Q ss_pred ecCccccCCC-CCCEEECCCCcCcccCCcccCCCCCCCEEEccCCc---CCCCCCccccCCCCCcEEecccccceeccCc
Q 047097 89 TLSPYVGNLS-FLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNS---FSGTIPTNLSRCSNLIELFVDTNYLVGEIPA 164 (443)
Q Consensus 89 ~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 164 (443)
....+|.+++ .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3445666774 5888888754 555567788889999999887653 54444566788888888877654 4434556
Q ss_pred cccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCc
Q 047097 165 AIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLE 244 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 244 (443)
+|..+.+|+.+.+..+. .......+..+..|+.+.+..+...-....|.. ..|+.+.+..+... .....+..+.+++
T Consensus 132 aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhhccccccccccee-eeecccceecccccccccccceeeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence 77888888888886543 324456677888888888876532222244433 56777777654322 2334566677777
Q ss_pred EEEcccCCCCccCchhhhc-------------CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcccc
Q 047097 245 VISLSENRFTGSLPVDTGV-------------NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 245 ~L~l~~n~~~~~~~~~~~~-------------~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
.......... .+....+. ....+..+.+.. .++..-...|..|..|+.+.+..+... .....|.
T Consensus 209 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 209 TITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp EEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred eecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccc
Confidence 7666544332 11111110 112223333322 122223345667777777777654332 4445567
Q ss_pred CCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhc
Q 047097 312 RLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRK 391 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 391 (443)
+++.|+.+.+. +.++.... ..+.+|.+|+.+++..+ ++ .+....+..+.+|+.+.+..+ ++..-...|.+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPE------SVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp TCTTCCEEECC-TTCCEECT------TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred cccccccccCC-CcccccCc------eeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 77777777775 33433333 55677777777777653 43 344444444567777777543 44344556777
Q ss_pred ccCCCeeccccccccccCchhccCCCCCCeeecccCcC
Q 047097 392 LVSLNWLTIDRNQLTGTIPPEIGELKNLQLLNLGGNFL 429 (443)
Q Consensus 392 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 356 C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 777777777766443 13556667777777665543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=2.6e-14 Score=135.19 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=15.9
Q ss_pred CCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCc
Q 047097 241 SSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFT 279 (443)
Q Consensus 241 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 279 (443)
++|++|++++|.+.+.....+...+++|++|++++|.++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 344455555544432222222222334444444444443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=3e-12 Score=107.15 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=72.5
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.++. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 356777777764 44434 267788888888887666777777778888888888777555555677777777777777
Q ss_pred cceeccCccccCCCCCcEEeccccccC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
++++..+..|..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 777554455667777777777777665
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.6e-12 Score=107.60 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=80.2
Q ss_pred CcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECC
Q 047097 243 LEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
.+++++++|.++ .+|..+ .+++++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467777777776 666543 3677888888888876667777788888888888888887666667788888888888
Q ss_pred CCcCCCcCCCchhhhhhhcCCCCCCEEEccCCccccc
Q 047097 323 INNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGE 359 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 359 (443)
+|.+++..+ ..+..+++|++|++++|++...
T Consensus 87 ~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPR------GAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCH------HHhcCCCCCCEEEeCCCCCCCC
Confidence 888876655 4567778888888888887743
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=2.2e-14 Score=135.80 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=130.8
Q ss_pred CCCCcEEEcccCCCCccCch----hhhcCCCCccEEeCCCCcCcccCCccc-cCCCCCCEEecccCcccccCCccc----
Q 047097 240 ISSLEVISLSENRFTGSLPV----DTGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDF---- 310 (443)
Q Consensus 240 ~~~L~~L~l~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~---- 310 (443)
.+.|++|++++|.++..... .+....++|++|++++|.++......+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998742222 222234799999999999875433333 345688999999999976544443
Q ss_pred -cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCch----hHHhhccCCCEEeCcCCcCccc-
Q 047097 311 -SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPH----SVANLSSTIKQIAMGRNRISGT- 384 (443)
Q Consensus 311 -~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~----~~~~~~~~L~~L~l~~n~l~~~- 384 (443)
...++|++|++++|.++.... ..+...+..+++|++|+|++|.+++.... .+.. .+.|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGV--AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHH--HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCHHH
T ss_pred HhcCCccceeeCCCCCCChHHH--HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCHHH
Confidence 356889999999998865322 22345667889999999999998854432 2333 36899999999999864
Q ss_pred ---CchhhhcccCCCeeccccccccccCchhccCCC---C--CCeee--cccCcCccc
Q 047097 385 ---IPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELK---N--LQLLN--LGGNFLQGS 432 (443)
Q Consensus 385 ---~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~---~--L~~L~--l~~n~l~~~ 432 (443)
++..+...++|++|+|++|.|++.....+..+. . |+.+. +.+|.++..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 445566778999999999999876655554432 1 66777 777777644
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=5.1e-12 Score=106.16 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=78.3
Q ss_pred cEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCC
Q 047097 244 EVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.+++++|.+. .+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777776 677654 36778888888888766677777888888888888888766665667788888888888
Q ss_pred CcCCCcCCCchhhhhhhcCCCCCCEEEccCCccc
Q 047097 324 NNLGTGTANELDFINLLTNCSKLERLYFNRNRFE 357 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 357 (443)
|.+++..+ ..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~------~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPR------GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCT------TTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCH------HHhccccCCCEEEeCCCCcc
Confidence 88876554 45677788888888888877
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=5.3e-12 Score=106.07 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=74.1
Q ss_pred EEEEcCCCCCceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccc
Q 047097 77 TRLDLRNQSIGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 156 (443)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45788888775 4444443 67888888888888777777888888888888888887544445677777777777777
Q ss_pred cceeccCccccCCCCCcEEeccccccC
Q 047097 157 YLVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 157 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
.+++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777444444667777777777777665
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=2e-10 Score=109.83 Aligned_cols=308 Identities=10% Similarity=0.100 Sum_probs=202.3
Q ss_pred EEEEEcCCCCCceecCccccCCCCCCEEECCCCc---CcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEe
Q 047097 76 VTRLDLRNQSIGGTLSPYVGNLSFLRYINLANNG---FLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELF 152 (443)
Q Consensus 76 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 152 (443)
++++.+... ++.....+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ +.......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 566666543 555666789999999999998763 55455678999999998887654 4435566788999999999
Q ss_pred cccccceeccCccccCCCCCcEEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCC
Q 047097 153 VDTNYLVGEIPAAIGGLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGT 232 (443)
Q Consensus 153 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+..+- .......|..+.+|+.+.+..+ +...-..++. ..+|+.+.+..+........+..+..++............
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred cccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 97543 3355567889999999998765 3323334444 4678888887665443346677777777776655433211
Q ss_pred CChh--------------hhCCCCCcEEEcccCCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecc
Q 047097 233 IPPP--------------IFNISSLEVISLSENRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 233 ~~~~--------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
... ......+..+.+.. .+. .+....+..+..|+.+.+..+... .-...|.+++.|+.+.+.
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 221 -DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp -SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred -cceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEecccccce-ecCcccccccccccccCC
Confidence 110 11122333444322 222 444556667888999988765443 455667889999999986
Q ss_pred cCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcC
Q 047097 299 RNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGR 378 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~ 378 (443)
+.++......|.++.+|+.+++..+ ++.... ..+.+|.+|+.+.+..+ ++ .+....+..+++|+.+++.+
T Consensus 297 -~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~------~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 297 -SRITELPESVFAGCISLKSIDIPEG-ITQILD------DAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TTCCEECTTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESS
T ss_pred -CcccccCceeecCCCCcCEEEeCCc-ccEehH------hHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECC
Confidence 4555566677889999999999754 444444 67889999999999754 55 56665555568999999988
Q ss_pred CcCcccCchhhhcccCCCeeccccccc
Q 047097 379 NRISGTIPPEIRKLVSLNWLTIDRNQL 405 (443)
Q Consensus 379 n~l~~~~~~~l~~l~~L~~L~l~~n~~ 405 (443)
+... ...+..+.+|+.+.+..+.+
T Consensus 367 ~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 367 SRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CHHH---HHTCBCCCCC----------
T ss_pred ceee---hhhhhccCCCCEEEeCCCCE
Confidence 7543 24567788899888876654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.19 E-value=4.5e-11 Score=112.14 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=103.8
Q ss_pred CCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCcccc--CCCCCCEEECCC--CcCCCcCCCchhhhhh
Q 047097 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS--RLKNLSWLNMGI--NNLGTGTANELDFINL 339 (443)
Q Consensus 264 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~~~~~~~~~~ 339 (443)
.+|+|+.|.+++|.-. .++. + ..++|++|++..+.+.......+. .+++|+.|+|+. +...+.. ...++...
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-DMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-CGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-hHHHHHHH
Confidence 6678888888776311 2232 3 367888888888777654433333 678888888753 2211111 00011112
Q ss_pred h--cCCCCCCEEEccCCcccccCchhHHh--hccCCCEEeCcCCcCccc----CchhhhcccCCCeeccccccccccCch
Q 047097 340 L--TNCSKLERLYFNRNRFEGELPHSVAN--LSSTIKQIAMGRNRISGT----IPPEIRKLVSLNWLTIDRNQLTGTIPP 411 (443)
Q Consensus 340 l--~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~ 411 (443)
+ ..+++|++|++.+|.+.+..+..+.. ..++|+.|++++|.+.+. ++..+..+++|+.|++++|.+++....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 35789999999999988655555543 247899999999998874 344456789999999999998866555
Q ss_pred hccC-CCCCCeeecccCc
Q 047097 412 EIGE-LKNLQLLNLGGNF 428 (443)
Q Consensus 412 ~~~~-l~~L~~L~l~~n~ 428 (443)
.+.. + ...+++++++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 5543 3 4568888876
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=1.2e-08 Score=96.96 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=86.0
Q ss_pred hcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhc
Q 047097 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLT 341 (443)
Q Consensus 262 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 341 (443)
+....+++.+.+..+ +.......+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +..... ..+.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~------~aF~ 283 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY------LLCS 283 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT------TTTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc------cccc
Confidence 335566666666543 23233445666777777777554 44444555667777777777543 333222 4566
Q ss_pred CCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhccCCCCC
Q 047097 342 NCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEIGELKNL 419 (443)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 419 (443)
+|++|+.+.+.++.++ .++...+..+.+|+.+.+..+ ++..-...|.+|++|+.+.+..+ ++.....+|.+++.+
T Consensus 284 ~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 7777777777776666 444444444567777777543 44344456777888888877654 443334566665433
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=2.9e-10 Score=106.75 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=50.7
Q ss_pred EecccC-cCCCCCChhhhCCCCCcEEEccc-CCCCccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEeccc
Q 047097 222 LDIAFN-HFSGTIPPPIFNISSLEVISLSE-NRFTGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 222 L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
++++++ .++ .+|. +..+++|++|++++ |.+. .++...+..+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 444 3444 55555555555553 5554 33333333555555555555555554444555555555555555
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCC
Q 047097 300 NQFSGRVSVDFSRLKNLSWLNMGINNLG 327 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
|++++..+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555543333333333 555555555443
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=2.5e-10 Score=107.17 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=79.5
Q ss_pred EcCCC-CCceecCccccCCCCCCEEECCC-CcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccccc
Q 047097 80 DLRNQ-SIGGTLSPYVGNLSFLRYINLAN-NGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNY 157 (443)
Q Consensus 80 ~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 157 (443)
+.+++ .+++ +|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 5654 566 88889999999986 88887777888999999999999999988778888889999999999998
Q ss_pred ceeccCccccCCCCCcEEeccccccC
Q 047097 158 LVGEIPAAIGGLFKLERLFIFHNHIT 183 (443)
Q Consensus 158 ~~~~~~~~l~~l~~L~~L~l~~n~l~ 183 (443)
+++..+..+..+. |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8854444455444 888888888776
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=1.8e-08 Score=95.63 Aligned_cols=315 Identities=11% Similarity=0.052 Sum_probs=183.3
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEecccccceeccCccccCCCCCc
Q 047097 94 VGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDTNYLVGEIPAAIGGLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 173 (443)
+....+|+.+.+.. .++..-..+|.++.+|+.+.+..+ ++......|.++ +|+.+.+..+ ++.....+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 44556778877754 344445567888888888888643 443445556665 5666666433 33222334433 3677
Q ss_pred EEeccccccCCCCCccccCCCCCCEEEccCCcCccccccccCCCcCcEEecccCcCCCCCChhhhCCCCCcEEEcccCCC
Q 047097 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLLLLDIAFNHFSGTIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 253 (443)
.+.+..+-.. .....+.++ +++.+.+..+...-....+..+..++...+..+.......... . .+..
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~---------~--~~~~ 183 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV---------L--YNKN 183 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE---------E--EETT
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccce---------e--cccc
Confidence 7766543221 222233332 3444444332111111334444444444443322110000000 0 0000
Q ss_pred CccCchhhhcCCCCccEEeCCCCcCcccCCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCc
Q 047097 254 TGSLPVDTGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANE 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
. ... ..+.....+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++....
T Consensus 184 ~-~~~-~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~-- 256 (379)
T 4h09_A 184 K-TIL-ESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS-- 256 (379)
T ss_dssp S-SEE-EECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--
T ss_pred c-cee-ccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--
Confidence 0 001 11113445555555443222 34455677888999988655 44455667888999999999765 444444
Q ss_pred hhhhhhhcCCCCCCEEEccCCcccccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeeccccccccccCchhc
Q 047097 334 LDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLTGTIPPEI 413 (443)
Q Consensus 334 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 413 (443)
..+..+.+|+.+.+..+ ++ .++...+..+++|+.+.+.++.++..-...|.+|.+|+.+.|..+ ++.....+|
T Consensus 257 ----~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 329 (379)
T 4h09_A 257 ----FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF 329 (379)
T ss_dssp ----TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred ----cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh
Confidence 56888999999999754 44 455555555689999999999888666778999999999999755 553456689
Q ss_pred cCCCCCCeeecccCcCccccCccccCCC
Q 047097 414 GELKNLQLLNLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 414 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 441 (443)
.+|++|+.+.+..+ ++..-..+|.+++
T Consensus 330 ~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 330 KNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred hCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 99999999999754 5544455666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=4.3e-10 Score=105.47 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=100.5
Q ss_pred CCccccCCCCCCEEecccCcccccCCccccCCCCCCEEECCCCcCCCcCCCchhhhhhh--cCCCCCCEEEccC--Cccc
Q 047097 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNLGTGTANELDFINLL--TNCSKLERLYFNR--NRFE 357 (443)
Q Consensus 282 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l--~~~~~L~~L~Ls~--n~l~ 357 (443)
+...+..+|.|++|++++|.-. ..+. + .+++|+.|++..+.+..... ..+ ..+|+|+.|+|+. +...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l------~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV------EDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH------HHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH------HHHHHccCCCCcEEEEeccccccc
Confidence 4455677899999999988311 2222 3 38899999999887654221 233 3789999999863 2211
Q ss_pred cc-----CchhHH-hhccCCCEEeCcCCcCcccCchhhh---cccCCCeeccccccccccC----chhccCCCCCCeeec
Q 047097 358 GE-----LPHSVA-NLSSTIKQIAMGRNRISGTIPPEIR---KLVSLNWLTIDRNQLTGTI----PPEIGELKNLQLLNL 424 (443)
Q Consensus 358 ~~-----~p~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~l 424 (443)
+. +...+. ..+++|+.|++++|.+.+..+..+. .+++|+.|+|+.|.+.+.. +..+..+++|+.|++
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11 111111 2247999999999999865544443 5789999999999998643 444456799999999
Q ss_pred ccCcCccccCcc
Q 047097 425 GGNFLQGSIPSS 436 (443)
Q Consensus 425 ~~n~l~~~~p~~ 436 (443)
++|.+++..-..
T Consensus 315 ~~n~i~d~~~~~ 326 (362)
T 2ra8_A 315 KYNYLSDEMKKE 326 (362)
T ss_dssp CSBBCCHHHHHH
T ss_pred CCCcCCHHHHHH
Confidence 999998654433
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=4.7e-09 Score=88.86 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred hhhcCCCCCCEEEccCCcccccCchhHHhh---ccCCCEEeCcCCcCccc----CchhhhcccCCCeecc--cccccccc
Q 047097 338 NLLTNCSKLERLYFNRNRFEGELPHSVANL---SSTIKQIAMGRNRISGT----IPPEIRKLVSLNWLTI--DRNQLTGT 408 (443)
Q Consensus 338 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~---~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l--~~n~~~~~ 408 (443)
..+...++|++|+|++|.+.+.....+... .+.|+.|++++|.+.+. +...+...++|++|+| ++|.+...
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 344445555566666555553322222211 24566666666666543 3444556667777777 66776643
Q ss_pred ----CchhccCCCCCCeeecccCcCc
Q 047097 409 ----IPPEIGELKNLQLLNLGGNFLQ 430 (443)
Q Consensus 409 ----~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+.+.+...+.|+.|++++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455567777777777765
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=2.1e-08 Score=84.79 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=45.9
Q ss_pred cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhh---ccCCCEEeC--cCCcCccc-
Q 047097 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANL---SSTIKQIAM--GRNRISGT- 384 (443)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~---~~~L~~L~l--~~n~l~~~- 384 (443)
...++|++|++++|.+..... ..+...+...++|++|+|++|.+.+..-..+... .+.|+.|++ ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~--~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVA--FALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHH--HHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HhCCCcCEEECcCCCCChHHH--HHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 334455555555555432211 1122334444556666666665554322222111 245666666 55665543
Q ss_pred ---CchhhhcccCCCeecccccccc
Q 047097 385 ---IPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 385 ---~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
+...+...++|++|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455567777777777665
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.2e-07 Score=84.22 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=55.0
Q ss_pred cCCCCCCEEEccCCcccc--cCchhHHhhccCCCEEeCcCCcCcccCchhhhccc--CCCeeccccccccccCch-----
Q 047097 341 TNCSKLERLYFNRNRFEG--ELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLV--SLNWLTIDRNQLTGTIPP----- 411 (443)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~----- 411 (443)
..+++|+.|+|++|.+++ .+|..+..+ ++|+.|++++|.+++. ..+..+. +|++|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 457788888888888875 344444454 7788888888888754 3344444 788888888888765552
Q ss_pred --hccCCCCCCeee
Q 047097 412 --EIGELKNLQLLN 423 (443)
Q Consensus 412 --~~~~l~~L~~L~ 423 (443)
.+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 356677777765
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=1.2e-06 Score=77.92 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=52.9
Q ss_pred cCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccccCchhHHhhcc--CCCEEeCcCCcCcccCc--
Q 047097 311 SRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS--TIKQIAMGRNRISGTIP-- 386 (443)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~--~L~~L~l~~n~l~~~~~-- 386 (443)
..+++|+.|+|++|.+++... ++..+..+++|+.|+|++|.+++. ..+..+ . .|+.|++++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~----l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD----MSSIVQKAPNLKILNLSGNELKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG----GTTHHHHSTTCCEEECTTSCCCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCcc----chhHHhhCCCCCEEECCCCccCCc--hhhhhc-ccCCcceEEccCCcCccccCcc
Confidence 457778888888887766321 113455677888888888877743 223332 2 67788888888776554
Q ss_pred -----hhhhcccCCCeec
Q 047097 387 -----PEIRKLVSLNWLT 399 (443)
Q Consensus 387 -----~~l~~l~~L~~L~ 399 (443)
..+..+++|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 2356777777775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3e-07 Score=75.82 Aligned_cols=85 Identities=6% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCc-ccccCchhHHhh---ccCCCEEeCcCCc-CcccCchh
Q 047097 314 KNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNR-FEGELPHSVANL---SSTIKQIAMGRNR-ISGTIPPE 388 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~---~~~L~~L~l~~n~-l~~~~~~~ 388 (443)
-+|+.||++++.++.... ..+..+++|++|+|++|. +++..-..+... ++.|+.|++++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGG------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHH------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 468889998888765443 456788888999998884 775544445442 3468888888874 77766666
Q ss_pred hhcccCCCeecccccc
Q 047097 389 IRKLVSLNWLTIDRNQ 404 (443)
Q Consensus 389 l~~l~~L~~L~l~~n~ 404 (443)
+..+++|+.|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 7778888888888874
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=5.3e-07 Score=74.39 Aligned_cols=84 Identities=6% Similarity=0.042 Sum_probs=42.8
Q ss_pred CCCCEEecccCcccccCCccccCCCCCCEEECCCCc-CCCcCCCchhhhhhhcCC----CCCCEEEccCCc-ccccCchh
Q 047097 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINN-LGTGTANELDFINLLTNC----SKLERLYFNRNR-FEGELPHS 363 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~----~~L~~L~Ls~n~-l~~~~p~~ 363 (443)
..|++|+++++.+++.....+..+++|+.|++++|. ++.... ..+..+ ++|++|+|++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------ERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 355666666666555544455556666666666553 332111 223332 356666666653 55444444
Q ss_pred HHhhccCCCEEeCcCCc
Q 047097 364 VANLSSTIKQIAMGRNR 380 (443)
Q Consensus 364 ~~~~~~~L~~L~l~~n~ 380 (443)
+..+ ++|+.|++++|.
T Consensus 135 L~~~-~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHF-RNLKYLFLSDLP 150 (176)
T ss_dssp GGGC-TTCCEEEEESCT
T ss_pred HhcC-CCCCEEECCCCC
Confidence 4442 556666666553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=2e-05 Score=66.23 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=31.0
Q ss_pred cCCCCCCEEecccC-ccccc----CCccccCCCCCCEEECCCCcCCCcCCCchhhhhhhcCCCCCCEEEccCCcccc
Q 047097 287 SNASRLEMIEFSRN-QFSGR----VSVDFSRLKNLSWLNMGINNLGTGTANELDFINLLTNCSKLERLYFNRNRFEG 358 (443)
Q Consensus 287 ~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 358 (443)
..-+.|++|++++| .+.+. +...+..-+.|+.|+|++|.+...... .+...+..-+.|++|+|+.|.+.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~--alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--GLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--THHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH--HHHHHHhcCCccCeEecCCCcCCH
Confidence 34455666666553 44322 122233444555555555555432211 122334444455555555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=5.9e-05 Score=63.32 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=40.1
Q ss_pred CCCCccEEeCCCC-cCcc----cCCccccCCCCCCEEecccCcccccCCcc----ccCCCCCCEEECCCCcCCCcCCCch
Q 047097 264 NLPNLRQLSPNGN-NFTG----SIPVSLSNASRLEMIEFSRNQFSGRVSVD----FSRLKNLSWLNMGINNLGTGTANEL 334 (443)
Q Consensus 264 ~~~~L~~L~l~~n-~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.-+.|++|++++| .+.. .+...+...+.|++|+|++|.+.+..... +..-+.|+.|+|+.|.++.... .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga--~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--A 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--H
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH--H
Confidence 3445555555553 4431 12233344455555555555554332222 2234555555555555543221 1
Q ss_pred hhhhhhcCCCCCCEEEccC
Q 047097 335 DFINLLTNCSKLERLYFNR 353 (443)
Q Consensus 335 ~~~~~l~~~~~L~~L~Ls~ 353 (443)
.+...+..-+.|++|+|++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 2223444444555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0021 Score=50.18 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=41.8
Q ss_pred CEEEccCCccc-ccCchhHHhhccCCCEEeCcCCcCcccCchhhhcccCCCeecccccccc
Q 047097 347 ERLYFNRNRFE-GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRKLVSLNWLTIDRNQLT 406 (443)
Q Consensus 347 ~~L~Ls~n~l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 406 (443)
..++.+++.++ ..+|..+ +++++.|+|++|+|+..-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46778887775 3566443 356888888888888655566778888888888888765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.72 E-value=0.024 Score=44.11 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=15.1
Q ss_pred CCEEecccCcccccCCccccCCCCCCEEECCCCcC
Q 047097 292 LEMIEFSRNQFSGRVSVDFSRLKNLSWLNMGINNL 326 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
+++|+|++|+++...+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333344444444444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.36 E-value=32 Score=24.66 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=23.3
Q ss_pred CceecCccccCCCCCCEEECCCCcCcccCCcccCCCCCCCEEEccC
Q 047097 86 IGGTLSPYVGNLSFLRYINLANNGFLGEIPPQIGRQDMLEGLVLSN 131 (443)
Q Consensus 86 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 131 (443)
++..-...|.+++.|+.+.+..+ ++..-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334445666666666666543 2223344555666666655544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.46 E-value=22 Score=25.54 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=25.0
Q ss_pred CcccCCcccCCCCCCCEEEccCCcCCCCCCccccCCCCCcEEeccc
Q 047097 110 FLGEIPPQIGRQDMLEGLVLSNNSFSGTIPTNLSRCSNLIELFVDT 155 (443)
Q Consensus 110 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 155 (443)
++..-..+|.++..|+.+.+-.+ ++......|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44344456666666766666543 3324445566666666665544
Done!