Query 047098
Match_columns 113
No_of_seqs 105 out of 147
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 13:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047098.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047098hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ou8a_ b.136.1.1 (A:) Stringe 69.0 1 7.5E-05 30.2 1.8 20 43-62 9-28 (106)
2 d1yfna1 b.136.1.1 (A:4-111) St 66.4 1.2 9E-05 29.9 1.8 20 43-62 11-30 (108)
3 d1u5tb1 a.4.5.54 (B:396-489) V 49.0 4 0.00029 26.7 1.9 18 36-53 9-27 (94)
4 d2cuja1 a.4.1.18 (A:8-108) Tra 48.8 3.9 0.00028 26.4 1.8 16 43-58 85-100 (101)
5 d1a0pa1 a.60.9.1 (A:3-100) Rec 40.7 6.6 0.00048 23.5 1.9 18 43-60 77-94 (98)
6 d2ho2a1 b.72.1.1 (A:253-285) A 40.4 1.2 9E-05 24.8 -1.5 10 11-20 3-12 (33)
7 d3ci0k1 a.60.16.1 (K:204-274) 38.2 5.8 0.00042 24.5 1.3 15 9-23 35-49 (71)
8 d1vp7a_ a.7.13.1 (A:) Exonucle 23.5 54 0.004 19.3 4.0 43 9-51 2-47 (68)
9 d1wjpa3 g.37.1.1 (A:67-107) Zi 21.6 8.7 0.00063 21.8 -0.1 16 94-109 1-16 (41)
10 d1hf2a2 c.102.1.1 (A:1-99) Cel 19.3 33 0.0024 22.6 2.5 22 13-34 16-37 (99)
No 1
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=68.96 E-value=1 Score=30.21 Aligned_cols=20 Identities=10% Similarity=0.331 Sum_probs=14.9
Q ss_pred hHHHHHHHHhcCCCChhhhh
Q 047098 43 TMELYEFCLDQGYKSQIWRK 62 (113)
Q Consensus 43 S~eLYe~cl~~gyaD~~Lia 62 (113)
-|-+||||+|+|+----+++
T Consensus 9 iRA~y~W~~Dn~~TP~l~Vd 28 (106)
T d1ou8a_ 9 LRAYYDWLVDNSFTPYLVVD 28 (106)
T ss_dssp HHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHCCCCCeEEEE
Confidence 36699999999976555443
No 2
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=66.45 E-value=1.2 Score=29.88 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.2
Q ss_pred hHHHHHHHHhcCCCChhhhh
Q 047098 43 TMELYEFCLDQGYKSQIWRK 62 (113)
Q Consensus 43 S~eLYe~cl~~gyaD~~Lia 62 (113)
-|-+||||+|+|+----+++
T Consensus 11 iRA~y~W~~Dn~~TPyl~Vd 30 (108)
T d1yfna1 11 LRAFYEWLLDNQLTPHLVVD 30 (108)
T ss_dssp HHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEE
Confidence 46799999999976555554
No 3
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.98 E-value=4 Score=26.65 Aligned_cols=18 Identities=39% Similarity=0.800 Sum_probs=15.4
Q ss_pred chhhhhh-hHHHHHHHHhc
Q 047098 36 AAMFLTR-TMELYEFCLDQ 53 (113)
Q Consensus 36 k~lyykr-S~eLYe~cl~~ 53 (113)
.++||+. |++|+|||...
T Consensus 9 ~~lyh~ELArqlae~l~~~ 27 (94)
T d1u5tb1 9 KELFLDEIAREIYEFTLSE 27 (94)
T ss_dssp STTHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 3789999 99999999853
No 4
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.76 E-value=3.9 Score=26.43 Aligned_cols=16 Identities=31% Similarity=0.839 Sum_probs=14.6
Q ss_pred hHHHHHHHHhcCCCCh
Q 047098 43 TMELYEFCLDQGYKSQ 58 (113)
Q Consensus 43 S~eLYe~cl~~gyaD~ 58 (113)
++.||+|++++|++++
T Consensus 85 ~~rIydfl~~~GWi~~ 100 (101)
T d2cuja1 85 TRKIYDFLIREGYITK 100 (101)
T ss_dssp HHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHccCccc
Confidence 8899999999999875
No 5
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=40.65 E-value=6.6 Score=23.49 Aligned_cols=18 Identities=6% Similarity=0.252 Sum_probs=14.9
Q ss_pred hHHHHHHHHhcCCCChhh
Q 047098 43 TMELYEFCLDQGYKSQIW 60 (113)
Q Consensus 43 S~eLYe~cl~~gyaD~~L 60 (113)
=|-+|.||+++|+++.|=
T Consensus 77 lr~ff~~l~~~~~i~~nP 94 (98)
T d1a0pa1 77 VRRLFQYLYREKFREDDP 94 (98)
T ss_dssp HHHHHHHHHHTTSSSSCT
T ss_pred HHHHHHHHHHCCCcCcCc
Confidence 456899999999998763
No 6
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.36 E-value=1.2 Score=24.79 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=8.1
Q ss_pred CCCchhchHH
Q 047098 11 NPEGWELIKP 20 (113)
Q Consensus 11 pPeGwelIep 20 (113)
-|+||+.|++
T Consensus 3 LPpGW~ki~D 12 (33)
T d2ho2a1 3 LPAGWMRVQD 12 (33)
T ss_dssp SCTTEEEEEC
T ss_pred CCCcceeeec
Confidence 3899999875
No 7
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=38.17 E-value=5.8 Score=24.51 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=12.9
Q ss_pred CCCCCchhchHHHHH
Q 047098 9 VQNPEGWELIKPTLR 23 (113)
Q Consensus 9 ~~pPeGwelIepTL~ 23 (113)
.+|+.||+.|+..+.
T Consensus 35 ~RP~~Gw~sv~~F~~ 49 (71)
T d3ci0k1 35 QRPAKGWEDVDQFLA 49 (71)
T ss_dssp TCCTTCCSCHHHHHT
T ss_pred hCCcchhhhHHHHHh
Confidence 469999999999875
No 8
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=23.46 E-value=54 Score=19.33 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=28.7
Q ss_pred CCCCCchhchHHHHHHHHHHHHhccc---cchhhhhhhHHHHHHHH
Q 047098 9 VQNPEGWELIKPTLRELQAKMREGGL---RAAMFLTRTMELYEFCL 51 (113)
Q Consensus 9 ~~pPeGwelIepTL~el~~KMReae~---rk~lyykrS~eLYe~cl 51 (113)
+++|+.||.-=..|+++-++|...+. -.--.|++..+|..+|-
T Consensus 2 ~~~p~sfEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~ 47 (68)
T d1vp7a_ 2 RPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQ 47 (68)
T ss_dssp CCBCCSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46788888877777777777766554 11234567667777774
No 9
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=8.7 Score=21.85 Aligned_cols=16 Identities=38% Similarity=1.032 Sum_probs=12.4
Q ss_pred hhhhhhhcccccCCCC
Q 047098 94 YERLCCLRCMQPHDHN 109 (113)
Q Consensus 94 YEkLCCLrCIQ~~d~N 109 (113)
|.+|-||-|+.+-.+.
T Consensus 1 ykkltclecmrtfkss 16 (41)
T d1wjpa3 1 YKKLTCLECMRTFKSS 16 (41)
T ss_dssp TGGGEEGGGTEECSSH
T ss_pred CCcccHHHHHHHHHHH
Confidence 7899999999765443
No 10
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=19.33 E-value=33 Score=22.55 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=19.9
Q ss_pred CchhchHHHHHHHHHHHHhccc
Q 047098 13 EGWELIKPTLRELQAKMREGGL 34 (113)
Q Consensus 13 eGwelIepTL~el~~KMReae~ 34 (113)
+.|+.||..|.|+.+||.++..
T Consensus 16 ~~Y~~lE~llneI~~K~~~m~~ 37 (99)
T d1hf2a2 16 KDYQNLEEVLNAISARITQMGG 37 (99)
T ss_dssp CCCSCHHHHHHHHHHHHHHTGG
T ss_pred cchhhHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999875
Done!