Query 047100
Match_columns 233
No_of_seqs 214 out of 1238
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 8.3E-26 2.8E-30 163.2 5.6 63 133-195 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 89.7 0.13 4.5E-06 38.4 1.7 28 130-160 3-31 (77)
3 1u3e_M HNH homing endonuclease 80.0 0.27 9.3E-06 40.0 -0.7 38 135-176 109-146 (174)
4 1z1b_A Integrase; protein-DNA 77.4 2.7 9.3E-05 35.6 4.8 41 137-182 15-55 (356)
5 1b69_A Protein (integrase); in 33.9 26 0.00087 25.4 2.5 28 132-161 9-36 (69)
6 1x60_A Sporulation-specific N- 29.6 33 0.0011 23.6 2.5 23 158-180 46-68 (79)
7 3jtz_A Integrase; four strande 25.9 59 0.002 23.7 3.4 37 145-182 37-75 (88)
8 1uta_A FTSN, MSGA, cell divisi 25.3 40 0.0014 23.5 2.3 23 158-180 46-68 (81)
9 2ftc_I Mitochondrial ribosomal 21.2 1.3E+02 0.0044 23.3 4.7 35 145-183 79-114 (118)
10 3mn5_S Protein spire, actin, a 19.8 33 0.0011 22.0 0.8 8 12-19 19-26 (38)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=8.3e-26 Score=163.23 Aligned_cols=63 Identities=76% Similarity=1.319 Sum_probs=60.0
Q ss_pred CceEEeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 047100 133 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLI 195 (233)
Q Consensus 133 S~YRGV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~i 195 (233)
.+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||..|
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 379999988899999999999888999999999999999999999999999999999999875
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=89.67 E-value=0.13 Score=38.43 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCCCceEEeEECC-CCcEEEEEeCCCCCCcEE
Q 047100 130 HVRMQYRGVRRRP-WGKFAAEIRDPKKNGARV 160 (233)
Q Consensus 130 ~~~S~YRGV~~r~-~GKW~A~I~~~~~nGkrv 160 (233)
...|+|.||++.+ .+.|.|+-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence 4689999999665 7999999998 66654
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=80.04 E-value=0.27 Score=40.04 Aligned_cols=38 Identities=8% Similarity=-0.109 Sum_probs=28.7
Q ss_pred eEEeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHH
Q 047100 135 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYD 176 (233)
Q Consensus 135 YRGV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD 176 (233)
++||.+...++|.+.|.. + +..+||.|++.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 456654224568999988 4 4577999999999999974
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=77.44 E-value=2.7 Score=35.64 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=31.8
Q ss_pred EeEECCCCcEEEEEeCCCCCCcEEeccCCCCHHHHHHHHHHHHHHh
Q 047100 137 GVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKM 182 (233)
Q Consensus 137 GV~~r~~GKW~A~I~~~~~nGkrv~LGtFdT~EEAA~AYD~AA~~~ 182 (233)
||++++.|.|+.+... +|+++.+|. |..||..+..++...+
T Consensus 15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 6777777899988765 788999996 8888887776655544
No 5
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=33.86 E-value=26 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.1
Q ss_pred CCceEEeEECCCCcEEEEEeCCCCCCcEEe
Q 047100 132 RMQYRGVRRRPWGKFAAEIRDPKKNGARVW 161 (233)
Q Consensus 132 ~S~YRGV~~r~~GKW~A~I~~~~~nGkrv~ 161 (233)
.--+.|+++++.|+|+.++.+. .|++.+
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~--~Gkr~~ 36 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS--FGEPQF 36 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT--TSSEEE
T ss_pred CccCCCeEEccCCcEEEEEEcC--CCCEEE
Confidence 3456789999999999999984 355543
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.63 E-value=33 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.4
Q ss_pred cEEeccCCCCHHHHHHHHHHHHH
Q 047100 158 ARVWLGTYDTPEGAAFAYDRAAF 180 (233)
Q Consensus 158 krv~LGtFdT~EEAA~AYD~AA~ 180 (233)
.+|++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999988776554
No 7
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=25.94 E-value=59 Score=23.71 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=26.5
Q ss_pred cEEEEEeCCCCCCcEEeccCCC--CHHHHHHHHHHHHHHh
Q 047100 145 KFAAEIRDPKKNGARVWLGTYD--TPEGAAFAYDRAAFKM 182 (233)
Q Consensus 145 KW~A~I~~~~~nGkrv~LGtFd--T~EEAA~AYD~AA~~~ 182 (233)
.|.-+.+... +-+++-||.|. |.++|....+++...+
T Consensus 37 ~w~~ryr~~G-k~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 37 HWYLKYRISG-KESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEETT-EEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCC-eEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 5888887622 22568899997 5888888777776665
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.28 E-value=40 Score=23.53 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.5
Q ss_pred cEEeccCCCCHHHHHHHHHHHHH
Q 047100 158 ARVWLGTYDTPEGAAFAYDRAAF 180 (233)
Q Consensus 158 krv~LGtFdT~EEAA~AYD~AA~ 180 (233)
.||.+|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 68999999999999988776554
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=21.16 E-value=1.3e+02 Score=23.33 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=27.4
Q ss_pred cEEEEEeCCCCCCcE-EeccCCCCHHHHHHHHHHHHHHhc
Q 047100 145 KFAAEIRDPKKNGAR-VWLGTYDTPEGAAFAYDRAAFKMR 183 (233)
Q Consensus 145 KW~A~I~~~~~nGkr-v~LGtFdT~EEAA~AYD~AA~~~~ 183 (233)
.|.|+|.. |+- +-++...+++.|..|..+|+.++=
T Consensus 79 ~wva~Vk~----G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA----GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC----CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 49999986 444 455556889999999999998874
No 10
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=19.80 E-value=33 Score=22.04 Aligned_cols=8 Identities=63% Similarity=0.941 Sum_probs=7.0
Q ss_pred HHHHHHHH
Q 047100 12 ALLESIRQ 19 (233)
Q Consensus 12 ~~l~sir~ 19 (233)
.|||||||
T Consensus 19 ql~esir~ 26 (38)
T 3mn5_S 19 QLMESIRK 26 (38)
T ss_pred HHHHHHHc
Confidence 58999998
Done!